Citrus Sinensis ID: 020714

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLKIH
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccEEEEEEEEccccccHHHHHHHHHccEEcEEccccccccccccEEEEcccEEEEEEccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHcccccccccEEEEEEccccccccHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccEcccccccccccccccccccccccccccHHHHHHHHHHHcccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHcccccHccccccccccEEEEEEccccccHHHHHHHHHcccEEEcccccccccccEEEEEEEccEEEEEEccccccHHHcccccHHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHcccccccccEEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MKALRALRtlapfaekpnkprlnplfihrfysaqpqqtdnetendcdsvfdssyfriptiddpqnnnaakkqeptwdekyrertdrivfgeeaqKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGiigapnagkssIINYMVGTKVAAVSRKTNTTTHEVLGVmtkadtqicifdtpglmlnksgyshkdVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERmgkqappkqkrvlcMNKVDLVTKKKDLLKVAEQFkhlpgyerifMTSGLKGAGLKALTQYLMEQFKDLGLKIH
Flexible Loop (DISEMBL)
mkalralrtlapfaekpnkprlnPLFIHRFYSAqpqqtdnetenDCDSVFDSSYFRiptiddpqnnnaakkqeptwdekyrertdrivfgeeaqkgklrifQEEEEERKHRALAKALLQAALERQEEEeeevkeedqksvavgiigapnagkssiiNYMVGTKVAAVSrktnttthevlgvmtkadTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIErmgkqappkqkrvlcmNKVDLVTKKKDLLKVAEQfkhlpgyerIFMTSGLKGAGLKALTQYLMEQFKDLGLKIH
Low Complexity Region (SEG)
MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEerkhralakallqaalerqeeeeeevkeedqkSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNkvdlvtkkkdllkvAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLKIH
Disordered region (IsUnstruct)
***********************PLFIHRFY******************F**SYFRI***********************************************************************************AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER*********KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG****
Disordered Region (DISOPRED)
******L*****************LFIHRF*******************FDSSYFRIPT********************************************************************************VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLKIH
Disordered Region (DISEMBL)
MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQP*********DCDSVFDSSYFRIPTIDDPQN************EKYRERTDRIVFGEEAQKGKLRIFQE********ALAKALLQAA*****************SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLKIH
Disordered Region (DISPRO)
*K*LRALRTLAPFAEKPNKPRLNPLFIHRFYSAQ***************************************PTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALER*********EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLKIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
O82626	423	GTP-binding protein ERG O	N/A	no	0.947	0.721	0.598	3e-99
O82653	437	GTP-binding protein ERG O	yes	no	0.972	0.716	0.556	9e-94
Q8G1P9	311	GTPase Era OS=Brucella su	yes	no	0.531	0.549	0.351	5e-21
Q8YG75	311	GTPase Era OS=Brucella me	yes	no	0.531	0.549	0.351	6e-21
A5EKL6	308	GTPase Era OS=Bradyrhizob	yes	no	0.490	0.512	0.360	1e-20
Q8UGK1	317	GTPase Era OS=Agrobacteri	yes	no	0.515	0.523	0.333	2e-20
A6U7A9	310	GTPase Era OS=Sinorhizobi	yes	no	0.515	0.535	0.333	4e-20
A4YWC7	307	GTPase Era OS=Bradyrhizob	yes	no	0.496	0.521	0.350	1e-19
Q92R46	313	GTPase Era OS=Rhizobium m	yes	no	0.515	0.530	0.322	1e-19
Q0APC5	314	GTPase Era OS=Maricaulis	yes	no	0.493	0.506	0.342	7e-19

>sp|O82626|ERG_ANTMA GTP-binding protein ERG OS=Antirrhinum majus GN=ERG PE=2 SV=1

 Score =  362 bits (928), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 192/321 (59%), Positives = 237/321 (73%), Gaps = 16/321 (4%)

Query: 1   MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETE-------NDCDSVFDSS 53
           MKA+RA   L P     +      +++HRFYSAQPQ TD+E         +  D+VFDSS
Sbjct: 1   MKAVRAALRLRPLTNSIS----TSVYLHRFYSAQPQHTDDEHHPKPEELLHQSDAVFDSS 56

Query: 54  YFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEER-KHRA 112
           +F +    D  N  A+  +  TWDE+YR+R    VF E+      +I + +EE++ K  A
Sbjct: 57  HFDL----DLNNLAASGAETTTWDERYRDRVKSRVFDEDDTSSYSKILKRDEEKKYKSAA 112

Query: 113 LAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN 172
           LAK+LL+AAL+ +E E  EVKEEDQKS++VGIIGAPNAGKS++ NY+VGTKV+AVSRKTN
Sbjct: 113 LAKSLLEAALDDEEVEVGEVKEEDQKSLSVGIIGAPNAGKSALTNYIVGTKVSAVSRKTN 172

Query: 173 TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDV 232
           TTTHEVLGV+TK DTQIC FDTPGLML KSG  + D+KVR ES WS++ L++VL+V+FDV
Sbjct: 173 TTTHEVLGVLTKRDTQICFFDTPGLMLKKSGIPYNDIKVRNESGWSSITLYDVLIVIFDV 232

Query: 233 HRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292
           HRHLT PDSRV+RLIER+G  +   QKRVLCMNKVDLVTKK DL+KVA++FK LPGYER 
Sbjct: 233 HRHLTRPDSRVVRLIERVGSVSSTSQKRVLCMNKVDLVTKKNDLVKVAKEFKDLPGYERH 292

Query: 293 FMTSGLKGAGLKALTQYLMEQ 313
           FM SGLKG GLK L QYL EQ
Sbjct: 293 FMVSGLKGYGLKDLAQYLTEQ 313

Has a crucial role in plant growth and development, possibly by influencing mitochondrial division.
Antirrhinum majus (taxid: 4151)

>sp|O82653|ERG_ARATH GTP-binding protein ERG OS=Arabidopsis thaliana GN=ERG PE=1 SV=2

 Score =  343 bits (881), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 182/327 (55%), Positives = 232/327 (70%), Gaps = 14/327 (4%)

Query: 1   MKALRALRTLAPFAEK-----PNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYF 55
           MKA R+LR L   +       P  P     F+ RFYSAQP   +  + N+  S  DS + 
Sbjct: 1   MKAFRSLRILISISRTTTKTTPRNPHQAQNFLRRFYSAQPNLDEPTSINEDGSSSDSVFD 60

Query: 56  RIPT-IDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALA 114
                IDD   ++  K +E TWD+ YRER ++  FG   +KGK+++ +EE  E    ++ 
Sbjct: 61  SSQYPIDDSNVDSVKKPKEATWDKGYRERVNKAFFGNLTEKGKVKVAEEESSEDDEDSVD 120

Query: 115 KALLQAALER--------QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166
           ++ + A            +E  E EV+EEDQKS+ VGIIG PNAGKSS+ N+MVGTKVAA
Sbjct: 121 RSRILAKALLEAALESPDEELGEGEVREEDQKSLNVGIIGPPNAGKSSLTNFMVGTKVAA 180

Query: 167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVL 226
            SRKTNTTTHEVLGV+TK DTQ+C FDTPGLML KSGY +KD+K RV++AW++V+LF+VL
Sbjct: 181 ASRKTNTTTHEVLGVLTKGDTQVCFFDTPGLMLKKSGYGYKDIKARVQNAWTSVDLFDVL 240

Query: 227 MVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286
           +V+FDVHRHL SPDSRV+RLI+ MG++  PKQKRVLCMNKVDLV KKKDLLKVAE+F+ L
Sbjct: 241 IVMFDVHRHLMSPDSRVVRLIKYMGEEENPKQKRVLCMNKVDLVEKKKDLLKVAEEFQDL 300

Query: 287 PGYERIFMTSGLKGAGLKALTQYLMEQ 313
           P YER FM SGLKG+G+K L+QYLM+Q
Sbjct: 301 PAYERYFMISGLKGSGVKDLSQYLMDQ 327

Has a crucial role in plant growth and development, possibly by influencing mitochondrial division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8G1P9|ERA_BRUSU GTPase Era OS=Brucella suis biovar 1 (strain 1330) GN=era PE=3 SV=1

 Score =  102 bits (253), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 96/182 (52%), Gaps = 11/182 (6%)

Query: 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQIC 190
           E +    +S  V +IGAPNAGKS+++N +VGTKV+ V+ K  TT   V G+  +   QI 
Sbjct: 11  ETEATQTRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIV 70

Query: 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM 250
           + DTPG+   K        +  V +AW      ++++V+ D        +     L+E M
Sbjct: 71  LVDTPGIFRPKRRLD----RAMVTTAWGGAKDADIILVIIDAQGGF---NENAEALLESM 123

Query: 251 GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
                 +QK+VL +NKVD V     LL +A++   L  ++R FM S L G+G K L +YL
Sbjct: 124 KDV---RQKKVLVLNKVDRVDPPV-LLSLAQKANELVPFDRTFMISALNGSGCKDLAKYL 179

Query: 311 ME 312
            E
Sbjct: 180 AE 181

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

>sp|Q8YG75|ERA_BRUME GTPase Era OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=era PE=3 SV=1

 Score =  101 bits (252), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 96/182 (52%), Gaps = 11/182 (6%)

Query: 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQIC 190
           E +    +S  V +IGAPNAGKS+++N +VGTKV+ V+ K  TT   V G+  +   QI 
Sbjct: 11  ETEATQTRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIV 70

Query: 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM 250
           + DTPG+   K        +  V +AW      ++++V+ D        +     L+E M
Sbjct: 71  LVDTPGIFRPKRRLD----RAMVTTAWGGAKDADIILVIIDAQGGF---NENAEALLESM 123

Query: 251 GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
                 +QK+VL +NKVD V     LL +A++   L  ++R FM S L G+G K L +YL
Sbjct: 124 KDV---RQKKVLVLNKVDRVDPPV-LLSLAQKANGLVPFDRTFMISALNGSGCKDLAKYL 179

Query: 311 ME 312
            E
Sbjct: 180 AE 181

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914)

>sp|A5EKL6|ERA_BRASB GTPase Era OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=era PE=3 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 11/169 (6%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V +IGAPN GKS+++N +VG+KV  VSRK  TT   + G++ +  +QI + DTPG+   K
Sbjct: 18  VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGTSQIILVDTPGIFSPK 77

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                   +  V +AWS  +  +++ V+ D  + L      +I       K A    +++
Sbjct: 78  RRLD----RAMVTTAWSGAHDADLVCVLLDAKKGLDDEAQAII------DKAAAVAHQKI 127

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
           L +NKVDLV ++K L  VA   + LP + R FM S L G G+  L Q L
Sbjct: 128 LVVNKVDLVPREKLLALVAAANEKLP-FARTFMISALSGDGVDDLKQAL 175

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000)

>sp|Q8UGK1|ERA_AGRT5 GTPase Era OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=era PE=3 SV=1

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 11/177 (6%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           +S  V +IG  NAGKS+++N +VG KV+ VS K  TT   + G+    + QI   DTPG+
Sbjct: 23  RSGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAVMRGIAIHKNAQIVFMDTPGI 82

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
              +        +  V SAW      ++++++ D  R L      ++  +    K  P  
Sbjct: 83  FKPRRRLD----RAMVTSAWGGAKDADLILLLIDSERGLKGDAEAILEGL----KDVP-- 132

Query: 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
           QK++LC+NK+D V K++DLLK+A        ++R FM S   G+G + L  YL+E  
Sbjct: 133 QKKILCLNKIDQV-KREDLLKLAAAANEKVAFDRTFMISATNGSGCEDLMDYLVETL 188

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

>sp|A6U7A9|ERA_SINMW GTPase Era OS=Sinorhizobium medicae (strain WSM419) GN=era PE=3 SV=1

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 11/177 (6%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           +S  V +IGA NAGKS++IN +VG KV+ VS K  TT   V G+    + QI   DTPG+
Sbjct: 17  RSGFVALIGATNAGKSTLINRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGI 76

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
              +        +  V +AW      +++M++ D  R +      ++  ++ +       
Sbjct: 77  FKPRRRLD----RAMVTTAWGGAKDADLIMLLIDSERGIKGDADTILEGLKDV------H 126

Query: 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
           Q +VL +NKVD V +++DLLK+A     +  +ER FM S L G+G + +  YL E+ 
Sbjct: 127 QPKVLVLNKVDQV-RREDLLKLAAAANEVVAFERTFMISALTGSGCEDVMDYLAERL 182

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Sinorhizobium medicae (strain WSM419) (taxid: 366394)

>sp|A4YWC7|ERA_BRASO GTPase Era OS=Bradyrhizobium sp. (strain ORS278) GN=era PE=3 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V +IGAPN GKS+++N +VG+KV  VSRK  TT   + G++ +  +QI + DTPG+   K
Sbjct: 17  VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGQSQIILVDTPGIFSPK 76

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                   +  V +AWS  +  +++ V+ D  + L      +I       K A    +++
Sbjct: 77  RRLD----RAMVTTAWSGAHDADLVCVLLDAKKGLDDEAQAII------DKAASVAHEKI 126

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
           L +NKVDLV ++K L  VA   + L  + R FM S L G G+  L + L E
Sbjct: 127 LVVNKVDLVPREKLLALVAAANEKL-AFARTFMISALSGDGVDDLRRALAE 176

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Bradyrhizobium sp. (strain ORS278) (taxid: 114615)

>sp|Q92R46|ERA_RHIME GTPase Era OS=Rhizobium meliloti (strain 1021) GN=era PE=3 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 11/177 (6%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           +S  V +IGA NAGKS+++N +VG KV+ VS K  TT   + G+      QI   DTPG+
Sbjct: 20  RSGFVALIGATNAGKSTLVNRLVGAKVSIVSHKVQTTRAIIRGIAIHGSAQIVFMDTPGI 79

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
              +        +  V +AW      +++M++ D  R +      ++  ++ +       
Sbjct: 80  FKPRRRLD----RAMVTTAWGGAKDADLIMLLIDSERGIKGDAEAILEGLKEV------H 129

Query: 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
           Q +VL +NKVD V +++DLLK+A     +  +ER FM S L G+G + +  YL E  
Sbjct: 130 QPKVLVLNKVDQV-RREDLLKLAAAANDVVAFERTFMISALTGSGCEDVMDYLAETL 185

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Rhizobium meliloti (strain 1021) (taxid: 266834)

>sp|Q0APC5|ERA_MARMM GTPase Era OS=Maricaulis maris (strain MCS10) GN=era PE=3 SV=1

 Score = 94.7 bits (234), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 19/178 (10%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
           +IG+PNAGKS+++N +VG KV  V+ K  TT   V GV    +TQI + DTPG+   K+ 
Sbjct: 13  VIGSPNAGKSTLVNALVGEKVTIVTHKVQTTRFAVRGVALAGETQIVLVDTPGVFAPKTR 72

Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDV-------HRHLTSPDSRVI----RLIERMGK 252
                 K  V +AWS     + +M V D        H    S DSR++    R+ E + K
Sbjct: 73  LD----KSMVAAAWSGAGEADTIMHVVDAGARARMEHGGAKSGDSRMVEDDDRVTEGLKK 128

Query: 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
               +QK +L +NKVDL+ + + LL ++++      Y  +FM S   G+G+  L +++
Sbjct: 129 T---EQKAILVLNKVDLMPRDQ-LLAMSQELYETGVYSEVFMISAKTGSGVPQLREFI 182

An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.

Maricaulis maris (strain MCS10) (taxid: 394221)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
225423607	423	PREDICTED: GTP-binding protein ERG-like	0.940	0.716	0.619	1e-109
297738021	423	unnamed protein product [Vitis vinifera]	0.940	0.716	0.619	1e-109
147860032	928	hypothetical protein VITISV_029539 [Viti	0.940	0.326	0.619	1e-109
255551213	427	GTP-binding protein erg, putative [Ricin	0.959	0.723	0.654	1e-107
449433519	430	PREDICTED: GTP-binding protein ERG-like	0.950	0.711	0.626	1e-105
224138540	428	predicted protein [Populus trichocarpa]	0.953	0.717	0.623	1e-101
297851576	435	GTP-binding protein [Arabidopsis lyrata	0.962	0.712	0.567	4e-98
6015115	423	RecName: Full=GTP-binding protein ERG gi	0.947	0.721	0.598	2e-97
356519381	415	PREDICTED: GTP-binding protein ERG-like	0.913	0.708	0.618	4e-96
15221574	437	GTP-binding protein ERG [Arabidopsis tha	0.972	0.716	0.556	5e-92

>gi|225423607|ref|XP_002274221.1| PREDICTED: GTP-binding protein ERG-like [Vitis vinifera]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/323 (61%), Positives = 240/323 (74%), Gaps = 20/323 (6%)

Query: 1   MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNET-------ENDCDSVFDSS 53
           MKALR LR L   + K  KP L    ++RFY+AQPQQ D+ T         D D+VFDSS
Sbjct: 1   MKALRGLRALTTLSSKTQKPHLTSNLLYRFYAAQPQQQDHSTTTNSLEDHEDDDAVFDSS 60

Query: 54  YFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRAL 113
            F +P +       +    +PTWD +YR + DR +FGEE QK K      EE+ERK RA+
Sbjct: 61  QFALPNM-----GTSPVPDQPTWDREYRAKADRTIFGEETQKQK-----SEEDERKRRAI 110

Query: 114 AKALLQAALERQEEEEEE---VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK 170
             A        Q+ +EE+   VKEEDQ+S++VGIIGAPNAGKSS+ N++VGTKVAAVSRK
Sbjct: 111 VLAKALLEAALQKPDEEDDMPVKEEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRK 170

Query: 171 TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVF 230
           TNTTTHEVLGVMTK +TQIC FDTPGLML  SGY + D++ RVESAWS+V L++VL+V+F
Sbjct: 171 TNTTTHEVLGVMTKGNTQICFFDTPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIF 230

Query: 231 DVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290
           DVHRHL+ PDSRV+RLIERMG QA PKQKRVLCMNKVDLV KKKDLLKVA++FK LPGYE
Sbjct: 231 DVHRHLSRPDSRVVRLIERMGAQAHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYE 290

Query: 291 RIFMTSGLKGAGLKALTQYLMEQ 313
           R FM SGLKG+G+K LTQ+LMEQ
Sbjct: 291 RYFMISGLKGSGVKDLTQFLMEQ 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738021|emb|CBI27222.3| unnamed protein product [Vitis vinifera]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/323 (61%), Positives = 240/323 (74%), Gaps = 20/323 (6%)

Query: 1   MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNET-------ENDCDSVFDSS 53
           MKALR LR L   + K  KP L    ++RFY+AQPQQ D+ T         D D+VFDSS
Sbjct: 1   MKALRGLRALTTLSSKTQKPHLTSNLLYRFYAAQPQQQDHSTTTNSLEDHEDDDAVFDSS 60

Query: 54  YFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRAL 113
            F +P +       +    +PTWD +YR + DR +FGEE QK K      EE+ERK RA+
Sbjct: 61  QFALPNM-----GTSPVPDQPTWDREYRAKADRTIFGEETQKQK-----SEEDERKRRAI 110

Query: 114 AKALLQAALERQEEEEEE---VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK 170
             A        Q+ +EE+   VKEEDQ+S++VGIIGAPNAGKSS+ N++VGTKVAAVSRK
Sbjct: 111 VLAKALLEAALQKPDEEDDMPVKEEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRK 170

Query: 171 TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVF 230
           TNTTTHEVLGVMTK +TQIC FDTPGLML  SGY + D++ RVESAWS+V L++VL+V+F
Sbjct: 171 TNTTTHEVLGVMTKGNTQICFFDTPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIF 230

Query: 231 DVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290
           DVHRHL+ PDSRV+RLIERMG QA PKQKRVLCMNKVDLV KKKDLLKVA++FK LPGYE
Sbjct: 231 DVHRHLSRPDSRVVRLIERMGAQAHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYE 290

Query: 291 RIFMTSGLKGAGLKALTQYLMEQ 313
           R FM SGLKG+G+K LTQ+LMEQ
Sbjct: 291 RYFMISGLKGSGVKDLTQFLMEQ 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860032|emb|CAN83131.1| hypothetical protein VITISV_029539 [Vitis vinifera]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/323 (61%), Positives = 240/323 (74%), Gaps = 20/323 (6%)

Query: 1   MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNET-------ENDCDSVFDSS 53
           MKALR LR L   + K  KP L    ++RFY+AQPQQ D+ T         D D+VFDSS
Sbjct: 467 MKALRGLRALTTLSSKTQKPHLTSNLLYRFYAAQPQQQDHSTTTNSLEDHEDDDAVFDSS 526

Query: 54  YFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRAL 113
            F +P +       +    +PTWD +YR + DR +FGEE QK K      EE+ERK RA+
Sbjct: 527 QFALPNM-----GTSPVPDQPTWDREYRAKADRTIFGEETQKQK-----SEEDERKRRAI 576

Query: 114 AKALLQAALERQEEEEEE---VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK 170
             A        Q+ +EE+   VKEEDQ+S++VGIIGAPNAGKSS+ N++VGTKVAAVSRK
Sbjct: 577 VLAKALLEAALQKPDEEDDMPVKEEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRK 636

Query: 171 TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVF 230
           TNTTTHEVLGVMTK +TQIC FDTPGLML  SGY + D++ RVESAWS+V L++VL+V+F
Sbjct: 637 TNTTTHEVLGVMTKGNTQICFFDTPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIF 696

Query: 231 DVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290
           DVHRHL+ PDSRV+RLIERMG QA PKQKRVLCMNKVDLV KKKDLLKVA++FK LPGYE
Sbjct: 697 DVHRHLSRPDSRVVRLIERMGAQAHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYE 756

Query: 291 RIFMTSGLKGAGLKALTQYLMEQ 313
           R FM SGLKG+G+K LTQ+LMEQ
Sbjct: 757 RYFMISGLKGSGVKDLTQFLMEQ 779

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551213|ref|XP_002516653.1| GTP-binding protein erg, putative [Ricinus communis] gi|223544148|gb|EEF45672.1| GTP-binding protein erg, putative [Ricinus communis]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/318 (65%), Positives = 253/318 (79%), Gaps = 9/318 (2%)

Query: 4   LRALRTLAPFAEKP-NKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTIDD 62
           ++A R L     KP N   L+   +  F+SAQPQQ D+E E++ DSVFDSS++ +P  D 
Sbjct: 1   MKAFRILGTLTSKPRNSHPLHQTLLSHFFSAQPQQNDSENESN-DSVFDSSHYTVPNFDT 59

Query: 63  PQNNNAAKK--QEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEE---ERKHRALAKAL 117
             ++++++   QEP WD+KYR+R DR+VF +E QK   +  QEEEE   + + R LAKAL
Sbjct: 60  NNSSSSSRTTPQEPAWDKKYRQRADRLVFNQEPQKANFKRLQEEEEEEVDERSRVLAKAL 119

Query: 118 LQAALER--QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT 175
           L+AALER   ++E+E V+EEDQKS+ VGI+GAPNAGKS++ NYMVGTKV+AVSRKTNTTT
Sbjct: 120 LRAALERPDDQDEDEVVREEDQKSLCVGIVGAPNAGKSALTNYMVGTKVSAVSRKTNTTT 179

Query: 176 HEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235
           HEVLGVMTK DTQIC FDTPGLML  +GYS+KDVK RVE+AWS VNL+++LMVVFDVHRH
Sbjct: 180 HEVLGVMTKGDTQICFFDTPGLMLKSNGYSYKDVKARVENAWSTVNLYDMLMVVFDVHRH 239

Query: 236 LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295
           LT PDSRVIRLIER+G Q   KQKR+LCMNKVDLV KKKDLLKVAEQFK LPGY+R FM 
Sbjct: 240 LTRPDSRVIRLIERVGSQTNTKQKRILCMNKVDLVEKKKDLLKVAEQFKDLPGYDRCFMI 299

Query: 296 SGLKGAGLKALTQYLMEQ 313
           SGLKGAG+K LTQYL+EQ
Sbjct: 300 SGLKGAGVKDLTQYLIEQ 317

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433519|ref|XP_004134545.1| PREDICTED: GTP-binding protein ERG-like [Cucumis sativus] gi|449506779|ref|XP_004162846.1| PREDICTED: GTP-binding protein ERG-like [Cucumis sativus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 248/327 (75%), Gaps = 21/327 (6%)

Query: 1   MKALRALRTLAPFAEKPNKPRL-NPLFIHRFYSAQPQQTDN-------ETENDCDSVFDS 52
           MKALRALR       K ++P L NP+F  R+YSAQP+Q D+       +TEN  DSVFDS
Sbjct: 1   MKALRALRIATTIPPKSHRPFLTNPIFPPRYYSAQPEQDDSNHNPTLSDTENAPDSVFDS 60

Query: 53  SYFRIPTIDDPQNNNAAKKQEPT--WDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKH 110
           S F IPT+D      +  K EP   WD+KYR + D+++FG++++  K ++ +EEEE R+ 
Sbjct: 61  SQFDIPTMD------STTKTEPDSGWDKKYRAKADKLIFGKDSEGVKYKLMEEEEERRR- 113

Query: 111 RALAKALLQAALER----QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166
           RALAK+LL+A LE     QE+ E  VKEEDQKS+AVGI+GAPNAGKS++ NYMVGTKVAA
Sbjct: 114 RALAKSLLEAVLETADDDQEDGERTVKEEDQKSLAVGIVGAPNAGKSALTNYMVGTKVAA 173

Query: 167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVL 226
           VSRK NTTTHEVLG MTK +TQIC FDTPGLML   G+ HKD+K RV+SAWS+V L++VL
Sbjct: 174 VSRKINTTTHEVLGTMTKGNTQICFFDTPGLMLKSKGFPHKDMKARVQSAWSSVELYDVL 233

Query: 227 MVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286
           +V+FDVHRHL  PDSRV+ LI+RMG    PKQKRVLCMNKVDLV  KKDLL VAEQFK L
Sbjct: 234 IVIFDVHRHLARPDSRVVGLIKRMGASPHPKQKRVLCMNKVDLVENKKDLLTVAEQFKDL 293

Query: 287 PGYERIFMTSGLKGAGLKALTQYLMEQ 313
           PGYER FM SGLKGAG+K L++YL EQ
Sbjct: 294 PGYERYFMISGLKGAGVKDLSKYLTEQ 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138540|ref|XP_002326628.1| predicted protein [Populus trichocarpa] gi|222833950|gb|EEE72427.1| predicted protein [Populus trichocarpa]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/324 (62%), Positives = 244/324 (75%), Gaps = 17/324 (5%)

Query: 1   MKALRALRTLAPFAEKPNKPRL--NPLFIHRFYSAQPQQTDNETEND-CDSVFDSSYFRI 57
           MK+LRALR  +  A KP  P +  N   +  F+SAQP Q  NE+END  DSVFDS+++  
Sbjct: 1   MKSLRALRIASTLASKP-PPFVCTNQNLLSHFFSAQPDQ--NESENDNSDSVFDSTHY-- 55

Query: 58  PTIDDPQNNNA----AKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRAL 113
            TID   NNN+    A  +EPTWDE+YRER D++VF +E QKGKL+I +E+EE+ + +  
Sbjct: 56  -TIDSSFNNNSNTTSATHKEPTWDERYRERVDKLVFKKETQKGKLQILEEQEEQVEEQRR 114

Query: 114 AKALLQAALERQEEEEEEVKEE----DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR 169
                       E  +EE  EE    DQKS++VGIIGAPNAGKS++ N+MVGTKVAAVSR
Sbjct: 115 RLLAKALLEAALERPDEEEGEEVREEDQKSLSVGIIGAPNAGKSALTNFMVGTKVAAVSR 174

Query: 170 KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV 229
           KTNTTTHEVLGVMT  DTQIC FDTPGLM+N  GY +KD+K RVESAWS+V+L++VLMV+
Sbjct: 175 KTNTTTHEVLGVMTDGDTQICFFDTPGLMVNNRGYPYKDMKTRVESAWSSVDLYDVLMVI 234

Query: 230 FDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY 289
           FDVHRHLT PDSRV+ LI+ MG QA PKQKRVLCMNK+DLV KKKDLLKV E+FK LPGY
Sbjct: 235 FDVHRHLTRPDSRVVGLIKCMGAQANPKQKRVLCMNKIDLVEKKKDLLKVVEEFKDLPGY 294

Query: 290 ERIFMTSGLKGAGLKALTQYLMEQ 313
           +R FM SGLKG+G+K L QYLMEQ
Sbjct: 295 DRHFMISGLKGSGVKHLNQYLMEQ 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851576|ref|XP_002893669.1| GTP-binding protein [Arabidopsis lyrata subsp. lyrata] gi|297339511|gb|EFH69928.1| GTP-binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 186/328 (56%), Positives = 236/328 (71%), Gaps = 18/328 (5%)

Query: 1   MKALRALRTLAPFAEK--PNKPRLNPLFIHRFYSAQPQQTD----NETENDCDSVFDSSY 54
           MKA R+LR L   +    P+K      F+ RFYSAQP   +    NE     DSVFDSS 
Sbjct: 1   MKAFRSLRILISISRTTTPHKSHQAQNFLRRFYSAQPNLDEPTSVNEDGTSSDSVFDSSQ 60

Query: 55  FRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQE-----EEEERK 109
           +    I+D   ++  K +E TWD+ YRER ++  FG   +KGKL++ +E     ++E+  
Sbjct: 61  Y---PIEDSHGDSVKKPKEATWDKGYRERVNKAFFGNLTEKGKLKVAEEVSSEDDDEDNI 117

Query: 110 HRALAKALLQAALERQEEEEE----EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA 165
            R+   A        +  +EE    EV+EEDQKS+ VGIIG PNAGKSS+ N+MVGTKVA
Sbjct: 118 DRSRILAKALLEAALESPDEELGEGEVREEDQKSLNVGIIGPPNAGKSSLTNFMVGTKVA 177

Query: 166 AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEV 225
           A SRKTNTTTHEVLGV+TK DTQ+C FDTPGLML KSGY +KD+K RV++AW++V+LF+V
Sbjct: 178 AASRKTNTTTHEVLGVLTKGDTQVCFFDTPGLMLKKSGYGYKDIKSRVQNAWTSVDLFDV 237

Query: 226 LMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH 285
           L+V+FDVHRHL SPDSRV+RLI+ MG++  PKQKR+LCMNKVDLV KKKDLLKVAE+F+ 
Sbjct: 238 LIVMFDVHRHLMSPDSRVVRLIKYMGEEENPKQKRILCMNKVDLVEKKKDLLKVAEEFQD 297

Query: 286 LPGYERIFMTSGLKGAGLKALTQYLMEQ 313
           LP YER FM SGLKG+G+K L+QYLM+Q
Sbjct: 298 LPAYERYFMISGLKGSGVKDLSQYLMDQ 325

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6015115|sp|O82626.1|ERG_ANTMA RecName: Full=GTP-binding protein ERG gi|3676069|emb|CAA76925.1| ERG protein [Antirrhinum majus]

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/321 (59%), Positives = 237/321 (73%), Gaps = 16/321 (4%)

Query: 1   MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETE-------NDCDSVFDSS 53
           MKA+RA   L P     +      +++HRFYSAQPQ TD+E         +  D+VFDSS
Sbjct: 1   MKAVRAALRLRPLTNSIS----TSVYLHRFYSAQPQHTDDEHHPKPEELLHQSDAVFDSS 56

Query: 54  YFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEER-KHRA 112
           +F +    D  N  A+  +  TWDE+YR+R    VF E+      +I + +EE++ K  A
Sbjct: 57  HFDL----DLNNLAASGAETTTWDERYRDRVKSRVFDEDDTSSYSKILKRDEEKKYKSAA 112

Query: 113 LAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN 172
           LAK+LL+AAL+ +E E  EVKEEDQKS++VGIIGAPNAGKS++ NY+VGTKV+AVSRKTN
Sbjct: 113 LAKSLLEAALDDEEVEVGEVKEEDQKSLSVGIIGAPNAGKSALTNYIVGTKVSAVSRKTN 172

Query: 173 TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDV 232
           TTTHEVLGV+TK DTQIC FDTPGLML KSG  + D+KVR ES WS++ L++VL+V+FDV
Sbjct: 173 TTTHEVLGVLTKRDTQICFFDTPGLMLKKSGIPYNDIKVRNESGWSSITLYDVLIVIFDV 232

Query: 233 HRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292
           HRHLT PDSRV+RLIER+G  +   QKRVLCMNKVDLVTKK DL+KVA++FK LPGYER 
Sbjct: 233 HRHLTRPDSRVVRLIERVGSVSSTSQKRVLCMNKVDLVTKKNDLVKVAKEFKDLPGYERH 292

Query: 293 FMTSGLKGAGLKALTQYLMEQ 313
           FM SGLKG GLK L QYL EQ
Sbjct: 293 FMVSGLKGYGLKDLAQYLTEQ 313

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519381|ref|XP_003528351.1| PREDICTED: GTP-binding protein ERG-like [Glycine max]

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 198/320 (61%), Positives = 243/320 (75%), Gaps = 26/320 (8%)

Query: 4   LRALRTLAPFAEKPNKPRLNPLFIHR-FYSAQPQ-QTDNETENDCDSVFDSSYFRI---P 58
           ++ALRTL      P      P  + R F+SAQPQ   D+ T++   SVFDSS++ +   P
Sbjct: 1   MKALRTLRRTLYSPT-----PATVFRAFFSAQPQPHHDDPTDS---SVFDSSHYALEAEP 52

Query: 59  TIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALL 118
           T+          + +PTWDEKYR R DR+VFGEE  KGKLR+ +EE+E R+       L 
Sbjct: 53  TL--------KPEPKPTWDEKYRARADRVVFGEEGPKGKLRVKEEEDERRRRALAKALLE 104

Query: 119 QAALERQEEEEEE-----VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT 173
            A  E ++EEEE      VKE+DQKS++VGIIGAPNAGKS++ NYMVGTKVAAVSRKTNT
Sbjct: 105 AAMDEGEDEEEEGKGAGLVKEDDQKSLSVGIIGAPNAGKSALTNYMVGTKVAAVSRKTNT 164

Query: 174 TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233
           TTHEV+GV+TK DTQIC FDTPGLMLN  G+ ++DVKVRVESAWS+VNL+EVL+V+FDVH
Sbjct: 165 TTHEVVGVLTKGDTQICFFDTPGLMLNCGGFPYRDVKVRVESAWSSVNLYEVLIVIFDVH 224

Query: 234 RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293
           RH+T PDSRVI+LI+RMG ++ P Q+R+LCMNK+DLV KKKDLLKVAE+FK LPGYER F
Sbjct: 225 RHITRPDSRVIQLIKRMGARSIPNQRRILCMNKIDLVEKKKDLLKVAEEFKDLPGYERYF 284

Query: 294 MTSGLKGAGLKALTQYLMEQ 313
           M SGLKG+G+K LTQYLMEQ
Sbjct: 285 MISGLKGSGVKDLTQYLMEQ 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221574|ref|NP_174383.1| GTP-binding protein ERG [Arabidopsis thaliana] gi|11467944|sp|O82653.2|ERG_ARATH RecName: Full=GTP-binding protein ERG gi|9755380|gb|AAF98187.1|AC000107_10 F17F8.15 [Arabidopsis thaliana] gi|50253492|gb|AAT71948.1| At1g30960 [Arabidopsis thaliana] gi|53850539|gb|AAU95446.1| At1g30960 [Arabidopsis thaliana] gi|332193176|gb|AEE31297.1| GTP-binding protein ERG [Arabidopsis thaliana]

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 182/327 (55%), Positives = 232/327 (70%), Gaps = 14/327 (4%)

Query: 1   MKALRALRTLAPFAEK-----PNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYF 55
           MKA R+LR L   +       P  P     F+ RFYSAQP   +  + N+  S  DS + 
Sbjct: 1   MKAFRSLRILISISRTTTKTTPRNPHQAQNFLRRFYSAQPNLDEPTSINEDGSSSDSVFD 60

Query: 56  RIPT-IDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALA 114
                IDD   ++  K +E TWD+ YRER ++  FG   +KGK+++ +EE  E    ++ 
Sbjct: 61  SSQYPIDDSNVDSVKKPKEATWDKGYRERVNKAFFGNLTEKGKVKVAEEESSEDDEDSVD 120

Query: 115 KALLQAALER--------QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166
           ++ + A            +E  E EV+EEDQKS+ VGIIG PNAGKSS+ N+MVGTKVAA
Sbjct: 121 RSRILAKALLEAALESPDEELGEGEVREEDQKSLNVGIIGPPNAGKSSLTNFMVGTKVAA 180

Query: 167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVL 226
            SRKTNTTTHEVLGV+TK DTQ+C FDTPGLML KSGY +KD+K RV++AW++V+LF+VL
Sbjct: 181 ASRKTNTTTHEVLGVLTKGDTQVCFFDTPGLMLKKSGYGYKDIKARVQNAWTSVDLFDVL 240

Query: 227 MVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286
           +V+FDVHRHL SPDSRV+RLI+ MG++  PKQKRVLCMNKVDLV KKKDLLKVAE+F+ L
Sbjct: 241 IVMFDVHRHLMSPDSRVVRLIKYMGEEENPKQKRVLCMNKVDLVEKKKDLLKVAEEFQDL 300

Query: 287 PGYERIFMTSGLKGAGLKALTQYLMEQ 313
           P YER FM SGLKG+G+K L+QYLM+Q
Sbjct: 301 PAYERYFMISGLKGSGVKDLSQYLMDQ 327

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:2015771	437	AT1G30960 [Arabidopsis thalian	0.959	0.707	0.504	2.4e-76
UNIPROTKB|F1P349	458	ERAL1 "GTPase Era, mitochondri	0.298	0.209	0.406	1.2e-15
DICTYBASE|DDB_G0288609	398	eral1 "GTP-binding protein era	0.332	0.268	0.409	2.2e-15
UNIPROTKB|B5X2B8	457	eral1 "GTPase Era, mitochondri	0.282	0.199	0.461	5.7e-15
UNIPROTKB|Q8JIF5	461	ERAL1 "GTPase Era, mitochondri	0.298	0.208	0.395	8.1e-15
UNIPROTKB|A5PK43	437	ERAL1 "GTPase Era, mitochondri	0.360	0.265	0.356	9.6e-15
UNIPROTKB|O75616	437	ERAL1 "GTPase Era, mitochondri	0.360	0.265	0.356	2.5e-14
TIGR_CMR|NSE_0959	308	NSE_0959 "GTP-binding protein	0.496	0.519	0.293	3.6e-14
MGI|MGI:1889295	437	Eral1 "Era (G-protein)-like 1	0.282	0.208	0.373	2.7e-13
UNIPROTKB|F1RNA7	437	LOC100518578 "Uncharacterized	0.282	0.208	0.384	3.5e-13

TAIR|locus:2015771 AT1G30960 [Arabidopsis thaliana (taxid:3702)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 167/331 (50%), Positives = 209/331 (63%)

Query:     1 MKALRALRTLAPFAEKPNK--PRLNPL----FIHRFYSAQPQQTD----NETENDCDSVF 50
             MKA R+LR L   +    K  PR NP     F+ RFYSAQP   +    NE  +  DSVF
Sbjct:     1 MKAFRSLRILISISRTTTKTTPR-NPHQAQNFLRRFYSAQPNLDEPTSINEDGSSSDSVF 59

Query:    51 DSSYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEXXXX 110
             DSS +  P IDD   ++  K +E TWD+ YRER ++  FG   +KGK+++ +EE      
Sbjct:    60 DSSQY--P-IDDSNVDSVKKPKEATWDKGYRERVNKAFFGNLTEKGKVKVAEEESSEDDE 116

Query:   111 XXXXXXXXXXXXXXXXXXXX--------XXXXXXXXSVAVGIIGAPNAGKSSIINYMVGT 162
                                                 S+ VGIIG PNAGKSS+ N+MVGT
Sbjct:   117 DSVDRSRILAKALLEAALESPDEELGEGEVREEDQKSLNVGIIGPPNAGKSSLTNFMVGT 176

Query:   163 KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL 222
             KVAA SRKTNTTTHEVLGV+TK DTQ+C FDTPGLML KSGY +KD+K RV++AW++V+L
Sbjct:   177 KVAAASRKTNTTTHEVLGVLTKGDTQVCFFDTPGLMLKKSGYGYKDIKARVQNAWTSVDL 236

Query:   223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNXXXXXXXXXXXXXXAEQ 282
             F+VL+V+FDVHRHL SPDSRV+RLI+ MG++  PKQKRVLCMN              AE+
Sbjct:   237 FDVLIVMFDVHRHLMSPDSRVVRLIKYMGEEENPKQKRVLCMNKVDLVEKKKDLLKVAEE 296

Query:   283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
             F+ LP YER FM SGLKG+G+K L+QYLM+Q
Sbjct:   297 FQDLPAYERYFMISGLKGSGVKDLSQYLMDQ 327

GO:0003723 "RNA binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

UNIPROTKB|F1P349 ERAL1 "GTPase Era, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 39/96 (40%), Positives = 57/96 (59%)

Query:   142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
             + IIGAPNAGKS++ N ++G KV  VS+K +TT  +  GV+T  DTQ+ I DTPGL    
Sbjct:    90 IAIIGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCKARGVITHEDTQLIILDTPGLTSPM 149

Query:   202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237
                 HK     +   W ++   ++++V+ DV  H T
Sbjct:   150 KAKRHKLEAAMLTDPWDSMKHADLVLVLVDVSEHWT 185

GO:0005525 "GTP binding" evidence=IEA

GO:0000028 "ribosomal small subunit assembly" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0043024 "ribosomal small subunit binding" evidence=IEA

DICTYBASE|DDB_G0288609 eral1 "GTP-binding protein era homolog" [Dictyostelium discoideum (taxid:44689)]

 Score = 202 (76.2 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 45/110 (40%), Positives = 69/110 (62%)

Query:   142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
             V IIGAPNAGKS+++N +VG K+ AVS   +TT   VLG+ +K DTQI   DTPG++ N 
Sbjct:   117 VAIIGAPNAGKSTLVNSIVGEKICAVSPTEHTTRDAVLGIYSKDDTQILFHDTPGIIKNF 176

Query:   202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERM 250
             +  +H  V+  V  AW  V   +++++V D   + +S    ++ +L E+M
Sbjct:   177 NRMAH--VREFVNLAWGVVKEADIVLLVVDATNNNSSDTEFIVGKLEEQM 224

GO:0005525 "GTP binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|B5X2B8 eral1 "GTPase Era, mitochondrial" [Salmo salar (taxid:8030)]

 Score = 195 (73.7 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
 Identities = 42/91 (46%), Positives = 58/91 (63%)

Query:   142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
             V IIGAPNAGKS++ N ++G KV AVS+K +TT    LGV+T+ DTQI + DTPGL    
Sbjct:   111 VAIIGAPNAGKSTLSNQLLGRKVFAVSKKVHTTRARALGVLTEDDTQIILLDTPGLTTPT 170

Query:   202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDV 232
                 H+  K  +E  W+ V    +++V+ DV
Sbjct:   171 KVKRHQLEKSLLEDPWNTVKEAGLVVVMVDV 201

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0019843 "rRNA binding" evidence=ISS

GO:0043024 "ribosomal small subunit binding" evidence=ISS

UNIPROTKB|Q8JIF5 ERAL1 "GTPase Era, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 185 (70.2 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
 Identities = 38/96 (39%), Positives = 57/96 (59%)

Query:   142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
             + IIGAPN+GKS++ N ++G KV  VS+K +TT  +  GV+T  DTQ+ I DTPGL    
Sbjct:    93 ISIIGAPNSGKSTLSNQLLGRKVFPVSKKVHTTRCKARGVITHEDTQLIILDTPGLTSPM 152

Query:   202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237
                 HK     +   W ++   ++++V+ DV  H T
Sbjct:   153 KAKRHKLEAAMLTDPWDSMKHADLVLVLVDVSDHWT 188

GO:0005525 "GTP binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0043024 "ribosomal small subunit binding" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0019843 "rRNA binding" evidence=ISS

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

UNIPROTKB|A5PK43 ERAL1 "GTPase Era, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 183 (69.5 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
 Identities = 46/129 (35%), Positives = 78/129 (60%)

Query:   142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN- 200
             V ++GAPNAGKS++ N ++G KV  VS+K +TT  + LGV+T+ +TQ+ + DTPGL+   
Sbjct:   116 VVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRSQALGVITEKETQVILLDTPGLISPA 175

Query:   201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH----RHLTSPDSRVIRLIERMGKQAPP 256
             K    H ++ + +E  W ++   ++++V+ DV     R+  SP  +V+R + +   Q P 
Sbjct:   176 KQKRHHLELSL-LEDPWKSMESADLVVVLVDVSDKWTRNQLSP--QVLRCLTQFS-QVPS 231

Query:   257 KQKRVLCMN 265
                 +L MN
Sbjct:   232 ----ILVMN 236

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0019843 "rRNA binding" evidence=ISS

GO:0043024 "ribosomal small subunit binding" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|O75616 ERAL1 "GTPase Era, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 46/129 (35%), Positives = 78/129 (60%)

Query:   142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML-N 200
             V ++GAPNAGKS++ N ++G KV  VSRK +TT  + LGV+T+ +TQ+ + DTPG++   
Sbjct:   116 VVLLGAPNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQVILLDTPGIISPG 175

Query:   201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH----RHLTSPDSRVIRLIERMGKQAPP 256
             K    H ++ + +E  W ++   ++++V+ DV     R+  SP  +++R + +   Q P 
Sbjct:   176 KQKRHHLELSL-LEDPWKSMESADLVVVLVDVSDKWTRNQLSP--QLLRCLTKYS-QIPS 231

Query:   257 KQKRVLCMN 265
                 VL MN
Sbjct:   232 ----VLVMN 236

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0003723 "RNA binding" evidence=NAS

GO:0005525 "GTP binding" evidence=NAS

GO:0043024 "ribosomal small subunit binding" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0019843 "rRNA binding" evidence=IDA

GO:0000028 "ribosomal small subunit assembly" evidence=IMP

TIGR_CMR|NSE_0959 NSE_0959 "GTP-binding protein Era" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 194 (73.4 bits), Expect = 3.6e-14, P = 3.6e-14
 Identities = 51/174 (29%), Positives = 86/174 (49%)

Query:   139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198
             S  V +IG  N GKS+++N ++G+K++AV+ K  TT   + G+ TK D Q+   DTPG+ 
Sbjct:    22 SAFVSLIGNSNVGKSTLLNALIGSKISAVTHKVQTTRTRIRGIYTKDDVQLVFVDTPGIF 81

Query:   199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ 258
             + +        +V V++AW A    ++   + D  R ++     ++R  +  GK      
Sbjct:    82 IPRCQLE----RVIVKNAWRAFAGTDIFCFIIDPRRPISDSTKDILR--KANGKL----- 130

Query:   259 KRVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
               VL +N              A++   L  +E+ FM S LKG G+  L  YL++
Sbjct:   131 --VLVINKIDLVEKPRLLEV-AQELNSLGHFEKTFMISALKGNGVADLMNYLLK 181

GO:0005525 "GTP binding" evidence=ISS

GO:0016049 "cell growth" evidence=ISS

MGI|MGI:1889295 Eral1 "Era (G-protein)-like 1 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 176 (67.0 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
 Identities = 34/91 (37%), Positives = 60/91 (65%)

Query:   142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
             V ++GAPNAGKS++ N ++G KV  VS+K +TT  + LGV+T+ +TQ+ + DTPG++   
Sbjct:   116 VVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQVILLDTPGIISPV 175

Query:   202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDV 232
                 H   +  +E  W+++   ++++V+ DV
Sbjct:   176 KQKRHHLERSLLEDPWTSMESADLVVVLVDV 206

GO:0000028 "ribosomal small subunit assembly" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0019843 "rRNA binding" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0043024 "ribosomal small subunit binding" evidence=ISO

UNIPROTKB|F1RNA7 LOC100518578 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 173 (66.0 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 35/91 (38%), Positives = 57/91 (62%)

Query:   142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
             V I+GAPNAGKS++ N ++G KV  VS+K +TT  + LGV+T+ + Q+ + DTPGL+   
Sbjct:   116 VVILGAPNAGKSTLSNKLLGRKVFPVSKKVHTTRSQALGVITEKEAQVILLDTPGLISPA 175

Query:   202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDV 232
                 H      +E  W ++   ++++V+ DV
Sbjct:   176 KQKRHHLEPSLLEDPWKSMESADLVVVLVDV 206

GO:0043024 "ribosomal small subunit binding" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0000028 "ribosomal small subunit assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82653	ERG_ARATH	No assigned EC number	0.5565	0.9720	0.7162	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030112001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (423 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	rps3	SubName- Full=Chromosome undetermined scaffold_3592, whole genome shotgun sequence; (207 aa)							•		0.595

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
cd04163	168	cd04163, Era, E	2e-53
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	6e-37
COG1159	298	COG1159, Era, GTPase [General function prediction	2e-31
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	2e-22
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-21
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	1e-20
cd00880	161	cd00880, Era_like, E	8e-20
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	3e-19
TIGR00436	270	TIGR00436, era, GTP-binding protein Era	3e-17
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	1e-16
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	1e-16
PRK15494	339	PRK15494, era, GTPase Era; Provisional	4e-16
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	1e-14
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	2e-11
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	2e-11
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	3e-11
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	5e-11
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	9e-11
cd01898	170	cd01898, Obg, Obg GTPase	2e-10
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	3e-10
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	5e-10
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	8e-10
TIGR02729	329	TIGR02729, Obg_CgtA, Obg family GTPase CgtA	6e-09
PRK12299	335	PRK12299, obgE, GTPase CgtA; Reviewed	1e-08
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	1e-08
COG1163	365	COG1163, DRG, Predicted GTPase [General function p	4e-08
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	6e-08
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	8e-08
COG0536	369	COG0536, Obg, Predicted GTPase [General function p	1e-07
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	2e-07
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	2e-07
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-07
PRK12298	390	PRK12298, obgE, GTPase CgtA; Reviewed	4e-07
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	5e-07
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	7e-07
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	8e-07
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	1e-06
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	2e-06
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	2e-06
PRK03003	472	PRK03003, PRK03003, GTP-binding protein Der; Revie	3e-06
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	4e-06
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	1e-05
cd01896	233	cd01896, DRG, Developmentally Regulated GTP-bindin	1e-05
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	2e-05
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	2e-05
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	2e-05
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	3e-05
PRK12296	500	PRK12296, obgE, GTPase CgtA; Reviewed	4e-05
PRK03003	472	PRK03003, PRK03003, GTP-binding protein Der; Revie	5e-05
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	9e-05
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	9e-05
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	9e-05
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	2e-04
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	3e-04
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	4e-04
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	6e-04
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	7e-04
pfam08477	116	pfam08477, Miro, Miro-like protein	0.001
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	0.001
COG3596	296	COG3596, COG3596, Predicted GTPase [General functi	0.002
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	0.003

>gnl|CDD|206726 cd04163, Era, E

 Score =  172 bits (438), Expect = 2e-53
 Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 10/178 (5%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
            KS  V IIG PN GKS+++N +VG K++ VS K  TT + + G+ T  D QI   DTPG
Sbjct: 1   FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPG 60

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
           +   K     K  +  V++AWSA+   ++++ V D    +   D  ++ L+++       
Sbjct: 61  IHKPK----KKLGERMVKAAWSALKDVDLVLFVVDASEWIGEGDEFILELLKKS------ 110

Query: 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
           K   +L +NK+DLV  K+DLL + E+ K L  +  IF  S LKG  +  L +Y++E  
Sbjct: 111 KTPVILVLNKIDLVKDKEDLLPLLEKLKELHPFAEIFPISALKGENVDELLEYIVEYL 168

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score =  133 bits (337), Expect = 6e-37
 Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 12/179 (6%)

Query: 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIF-D 193
              KS  V I+G PN GKS+++N +VG K++ VS K  TT H + G++T+ D QI IF D
Sbjct: 1   MGFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQI-IFVD 59

Query: 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ 253
           TPG+   K        +   ++AWS++   ++++ V D    +   D  ++  +      
Sbjct: 60  TPGIHKPK----RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKL------ 109

Query: 254 APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
              K   +L +NK+DLV  K++LL + E+   L  +  I   S LKG  +  L   + +
Sbjct: 110 KKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAK 168

Length = 292

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score =  119 bits (300), Expect = 2e-31
 Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 10/174 (5%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
            KS  V IIG PN GKS+++N +VG K++ VS K  TT + + G++T  + QI   DTPG
Sbjct: 4   FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPG 63

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
           +   K    H   ++  ++A SA+   ++++ V D        D  ++  +++       
Sbjct: 64  IHKPK----HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT------ 113

Query: 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
           K   +L +NK+D V  K  LLK+    K L  ++ I   S LKG  +  L + +
Sbjct: 114 KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEII 167

Length = 298

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 90.0 bits (224), Expect = 2e-22
 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V ++G PN GKS++IN + G KVA VS    TT   +LGV+     QI + DTPGL+   
Sbjct: 2   VALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVL-GLGRQIILVDTPGLI--- 57

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
            G S             A+   +++++V D    LT  D  ++  +E++      K+  +
Sbjct: 58  EGASEGKGVEGFNRFLEAIREADLILLVVDASEGLTEDDEEILEELEKLP-----KKPII 112

Query: 262 LCMNK 266
           L +NK
Sbjct: 113 LVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 88.7 bits (220), Expect = 2e-21
 Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 13/172 (7%)

Query: 143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLN 200
            ++G    GKSS++N ++G +V  VS    TT    + V    K   ++ + DTPG  L+
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPG--LD 58

Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR 260
           + G        R E A   +   +++++V D     +  D++++ L     +  P     
Sbjct: 59  EFGGLG-----REELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPI---- 109

Query: 261 VLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
           +L  NK+DL+ +++    +  +         +F  S   G G+  L + L+E
Sbjct: 110 ILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 91.3 bits (228), Expect = 1e-20
 Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 29/217 (13%)

Query: 117 LLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH 176
           LL A LE   EEEEE +EED   + + IIG PN GKS+++N ++G +   VS    TT  
Sbjct: 151 LLDAILELLPEEEEEEEEED-GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRD 209

Query: 177 EVLGVMTKADTQICIFDTPGL--------MLNKSGYSHKDVKVRVESAWSAVNLFEVLMV 228
            +     +   +  + DT G+         + K  YS       V     A+   +V+++
Sbjct: 210 SIDIPFERNGKKYTLIDTAGIRRKGKVTEGVEK--YS-------VLRTLKAIERADVVLL 260

Query: 229 VFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV----AEQFK 284
           V D    +T  D R+  L    GK        V+ +NK DLV  +K   +       +  
Sbjct: 261 VLDATEGITEQDLRIAGLALEAGKAL------VIVVNKWDLVKDEKTREEFKKELRRKLP 314

Query: 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLKI 321
            L  +  I   S L G G+  L   + E +++   +I
Sbjct: 315 FLD-FAPIVFISALTGQGVDKLLDAIDEVYENANRRI 350

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 84.2 bits (209), Expect = 8e-20
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 13/173 (7%)

Query: 143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNK 201
            I G PN GKSS++N ++G  V  VS    TT   V           + + DTPGL   +
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGL-DEE 59

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
            G        RVE A    +  +++++V D        ++++  L ER        +  +
Sbjct: 60  GGLGR----ERVEEARQVADRADLVLLVVDSDLTPVEEEAKLGLLRER-------GKPVL 108

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
           L +NK+DLV + ++   + E+   L     +   S L G G+  L + + E  
Sbjct: 109 LVLNKIDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKIAELL 161

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 87.2 bits (217), Expect = 3e-19
 Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 13/211 (6%)

Query: 116 ALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT 175
            LL A LE    +EEE +EE+   + + IIG PN GKSS+IN ++G +   VS    TT 
Sbjct: 155 DLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTR 214

Query: 176 HEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235
             +     +   +  + DT G +  K   +    K  V     A+   +V+++V D    
Sbjct: 215 DSIDIEFERDGRKYVLIDTAG-IRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG 273

Query: 236 LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL-----KVAEQFKHLPGYE 290
           ++  D R+  LIE  G+        V+ +NK DLV + +  +     K+  +   L  + 
Sbjct: 274 ISEQDLRIAGLIEEAGRGI------VIVVNKWDLVEEDEATMEEFKKKLRRKLPFL-DFA 326

Query: 291 RIFMTSGLKGAGLKALTQYLMEQFKDLGLKI 321
            I   S L G GL  L + + E ++    +I
Sbjct: 327 PIVFISALTGQGLDKLFEAIKEIYECATRRI 357

Length = 444

>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era

 Score = 79.7 bits (197), Expect = 3e-17
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 12/173 (6%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKS+++N + G K++  S K  TT + + G+ T   +QI   DTPG    K
Sbjct: 3   VAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK 62

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
               H   ++ ++ A SA+   ++++ V D           V+  ++ +      K+  V
Sbjct: 63  ----HSLNRLMMKEARSAIGGVDLILFVVDS-DQWNGDGEFVLTKLQNL------KRPVV 111

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
           L  NK+D   K K L  + +       ++ I   S L G     L  ++    
Sbjct: 112 LTRNKLDNKFKDKLLPLIDKYAILED-FKDIVPISALTGDNTSFLAAFIEVHL 163

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 76.3 bits (189), Expect = 1e-16
 Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 13/174 (7%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
             + + IIG PN GKSS++N ++G +   VS    TT   +         +  + DT G+
Sbjct: 1   DPIKIAIIGRPNVGKSSLLNALLGEERVIVSDIAGTTRDSIDVPFEYDGQKYTLIDTAGI 60

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
                     + K  V     A+   +V+++V D    +T  D R+  LI   GK     
Sbjct: 61  RKKGKVTEGIE-KYSVLRTLKAIERADVVLLVLDASEGITEQDLRIAGLILEEGKAL--- 116

Query: 258 QKRVLCMNKVDLVTKKKDLLK-----VAEQFKHLPGYERIFMTSGLKGAGLKAL 306
              ++ +NK DLV K +  +K     +  +   L     +F  S L G G+  L
Sbjct: 117 ---IIVVNKWDLVEKDEKTMKEFEKELRRKLPFLDYAPIVF-ISALTGQGVDKL 166

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 79.7 bits (198), Expect = 1e-16
 Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 29/201 (14%)

Query: 117 LLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH 176
           LL A LE   EEEEE  +E+ + + + IIG PN GKSS+IN ++G +   VS    TT  
Sbjct: 153 LLDAILEELPEEEEE--DEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRD 210

Query: 177 EVLGVMTKADTQICIFDTPGLMLNKSG--------YSHKDVKVRVESAWSAVNLFEVLMV 228
            +     +   +  + DT G+   + G        YS       V     A+   +V+++
Sbjct: 211 SIDTPFERDGQKYTLIDTAGIR--RKGKVTEGVEKYS-------VIRTLKAIERADVVLL 261

Query: 229 VFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLK--VAEQFKH 285
           V D    +T  D R+  L    G+        V+ +NK DLV +K  +  K  +  +   
Sbjct: 262 VIDATEGITEQDLRIAGLALEAGRAL------VIVVNKWDLVDEKTMEEFKKELRRRLPF 315

Query: 286 LPGYERIFMTSGLKGAGLKAL 306
           L  Y  I   S L G G+  L
Sbjct: 316 LD-YAPIVFISALTGQGVDKL 335

Length = 435

>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional

 Score = 77.4 bits (190), Expect = 4e-16
 Identities = 53/184 (28%), Positives = 98/184 (53%), Gaps = 14/184 (7%)

Query: 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIF 192
           K  +QK+V+V IIG PN+GKS+++N ++G K++ V+ K  TT   + G++T  DTQ+ ++
Sbjct: 46  KMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILY 105

Query: 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           DTPG+   K        K  V  AWS+++  ++++++ D    L S D     +++++  
Sbjct: 106 DTPGIFEPKGSLE----KAMVRCAWSSLHSADLVLLIID---SLKSFDDITHNILDKLRS 158

Query: 253 -QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLM 311
               P    +  +NK+D+ +K  + +K      H      +F  S L G  +  L +Y+ 
Sbjct: 159 LNIVP----IFLLNKIDIESKYLNDIKAFLTENHPDSL--LFPISALSGKNIDGLLEYIT 212

Query: 312 EQFK 315
            + K
Sbjct: 213 SKAK 216

Length = 339

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 37/228 (16%)

Query: 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS------VAVGIIGAPNAGKSS 154
           F EE+ E     L    ++  LE    E +E+    ++       + V IIG PN GKSS
Sbjct: 177 FPEEDIE----ELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSS 232

Query: 155 IINYMVGTKVAAVSRKTNT--TTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDV-- 209
           ++N ++G   A V   T+   TT +V+      +   + + DT G+          DV  
Sbjct: 233 LLNALLGRDRAIV---TDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE------TDDVVE 283

Query: 210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL 269
           ++ +E A  A+   ++++ V D  + L   D  +I L+       P K+  ++ +NK DL
Sbjct: 284 RIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELL-------PKKKPIIVVLNKADL 336

Query: 270 VTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317
           V+K +      E  K   G   I   S   G GL AL + + + F   
Sbjct: 337 VSKIEL-----ESEKLANGD-AIISISAKTGEGLDALREAIKQLFGKG 378

Length = 454

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 14/173 (8%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKS++ N + G ++A VS     T   + G       +  + DT GL    
Sbjct: 6   VAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD 65

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                + ++ +   A    ++  +L VV D    +T  D  + +++ R  K        +
Sbjct: 66  EDELQELIREQALIAIEEADV--ILFVV-DGREGITPADEEIAKILRRSKK------PVI 116

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
           L +NK+D     K      E F  L G+      S   G G+  L   ++E  
Sbjct: 117 LVVNKID---NLKAEELAYE-FYSL-GFGEPVPISAEHGRGIGDLLDAVLELL 164

Length = 444

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 108 RKHRALAKALLQAALERQEEEEEEVKEE--DQKSVAVGIIGAPNAGKSSIINYMVGTKVA 165
            K R   K + +A  +  EE+ + +K++   ++ + VG++G PN GKS++IN ++G KVA
Sbjct: 99  AKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVA 158

Query: 166 AVSRKTNTTTH--EVLGVMTKADTQICIFDTPGLMLNKS 202
             S +  TT     +     K D  I + DTPG++  K 
Sbjct: 159 KTSNRPGTTKGIQWI-----KLDDGIYLLDTPGIIPPKF 192

Length = 322

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 42/182 (23%)

Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--TTHEVL-------GVMTKADTQIC 190
           + V I G PN GKSS++N + G   A V   ++   TT +V+       G+  +      
Sbjct: 4   IKVVIAGKPNVGKSSLLNALAGRDRAIV---SDIAGTTRDVIEEEIDLGGIPVR------ 54

Query: 191 IFDTPGLMLNKSGYSHKDV--KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248
           + DT GL         +D   K+ +E A  A+   +++++V D    L   D  ++ L  
Sbjct: 55  LIDTAGLR------ETEDEIEKIGIERAREAIEEADLVLLVVDASEGLDEEDLEILEL-- 106

Query: 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ 308
                 P K+  ++ +NK DL++  + + ++          + I   S   G G+  L +
Sbjct: 107 ------PAKKPVIVVLNKSDLLSDAEGISELNG--------KPIIAISAKTGEGIDELKE 152

Query: 309 YL 310
            L
Sbjct: 153 AL 154

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 59.8 bits (146), Expect = 5e-11
 Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 15/171 (8%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
           I+G PN GKS++ N + G + A VS     T     G       +  + DT G+  +  G
Sbjct: 2   IVGRPNVGKSTLFNRLTGRRDAIVSDTPGVTRDRKYGEAEWGGREFILIDTGGIEPDDEG 61

Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263
            S + ++ + E A    ++  +L VV D    LT  D  + + + +  K        +L 
Sbjct: 62  ISKE-IREQAEIAIEEADV--ILFVV-DGREGLTPADEEIAKYLRKSKK------PVILV 111

Query: 264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
           +NK+D     K+  + AE F  L G+      S   G G+  L   ++E  
Sbjct: 112 VNKID---NIKEEEEAAE-FYSL-GFGEPIPISAEHGRGIGDLLDAILELL 157

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 59.3 bits (144), Expect = 9e-11
 Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 16/173 (9%)

Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGL 197
           + + I+G PN GKS+++N ++G K++    K  TT + V  V+ +     +  + DT G 
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
                 Y     ++   +  S++ +F+++++V DV   L    ++ I         A   
Sbjct: 62  ED----YD-AIRRLYYRAVESSLRVFDIVILVLDVEEILE-KQTKEII------HHAESG 109

Query: 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
              +L  NK+DL   K  L             E I   S   G  + +  + +
Sbjct: 110 VPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 160

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 65/202 (32%)

Query: 142 VGIIGAPNAGKSSIINYMVG--TKVAAVSRKTN---TTTHEVLGVMTKADTQICIF-DTP 195
           VG++G PNAGKS++++ +     K+A      +   TT    LGV+   D +  +  D P
Sbjct: 3   VGLVGLPNAGKSTLLSAISNAKPKIA------DYPFTTLVPNLGVVRVDDGRSFVIADIP 56

Query: 196 GLMLNKS---GYSHKDVKVRVESAWSAVNLF-------EVLMVVFDVHRHLTSPDS---- 241
           GL+   S   G  H+               F        VL+ V D    L+  D     
Sbjct: 57  GLIEGASEGKGLGHR---------------FLRHIERTRVLLHVID----LSGEDDPVED 97

Query: 242 -RVIR---------LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER 291
              IR         L E+          R++ +NK+DL+  ++   K+ E  K L G + 
Sbjct: 98  YETIRNELEAYNPGLAEK---------PRIVVLNKIDLLDAEERFEKLKELLKELKGKK- 147

Query: 292 IFMTSGLKGAGLKALTQYLMEQ 313
           +F  S L G GL  L + L + 
Sbjct: 148 VFPISALTGEGLDELLKKLAKL 169

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 60.5 bits (148), Expect = 3e-10
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 15/173 (8%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKS++ N + G + A VS     T     G       +  + DT G+  + 
Sbjct: 2   VAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD 61

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
            G   K ++ + E A    ++  +L VV D    LT  D  + + + + GK        +
Sbjct: 62  DGLD-KQIREQAEIAIEEADV--ILFVV-DGREGLTPEDEEIAKWLRKSGK------PVI 111

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
           L  NK+D   KK+D   VA +F  L G+      S   G G+  L   ++E  
Sbjct: 112 LVANKID--GKKEDA--VAAEFYSL-GFGEPIPISAEHGRGIGDLLDAILELL 159

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 20/203 (9%)

Query: 118 LQAALERQEEEEEEVKEEDQ-----KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN 172
           L   L     E +++    +         + I+G+PN GKSS++N ++    A VS    
Sbjct: 177 LNQLLLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKG 236

Query: 173 TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDV 232
           TT   V G        I + DT G+  +         ++ +E ++ A+   ++++ V D 
Sbjct: 237 TTRDVVEGDFELNGILIKLLDTAGIREHADFVE----RLGIEKSFKAIKQADLVIYVLDA 292

Query: 233 HRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292
            + LT  D  +I L +        K+  +L +NK+DL     +        K L      
Sbjct: 293 SQPLTKDDFLIIDLNKS-------KKPFILVLNKIDLKINSLEFFV---SSKVLNSSNLS 342

Query: 293 FMTSGLKGAGLKALTQYLMEQFK 315
                +K A +  LTQ +   + 
Sbjct: 343 AKQLKIK-ALVDLLTQKINAFYS 364

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 59.1 bits (144), Expect = 8e-10
 Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 41/188 (21%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV--------LG-VMTKADTQICIF 192
           +GI G  NAGKSS+IN + G  +A VS    TTT  V        LG V+        + 
Sbjct: 9   IGIFGRRNAGKSSLINALTGQDIAIVSDVPGTTTDPVYKAMELLPLGPVV--------LI 60

Query: 193 DTPGLMLNKSGYSHKDV----KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248
           DT GL          D     ++RVE     ++  ++ ++V D        +  +I  ++
Sbjct: 61  DTAGL---------DDEGELGELRVEKTREVLDKTDLALLVVDAGVGPGEYELELIEELK 111

Query: 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ 308
                       ++ +NK+DL  +  +L K+ ++F    G   IF  S L G G+  L +
Sbjct: 112 ERKI------PYIVVINKIDLGEESAELEKLEKKF----GLPPIF-VSALTGEGIDELKE 160

Query: 309 YLMEQFKD 316
            ++E   +
Sbjct: 161 AIIELLPE 168

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA

 Score = 56.3 bits (137), Expect = 6e-09
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 38/206 (18%)

Query: 125 QEEEEEEVKEEDQKSVA-VGIIGAPNAGKSSIINYM--VGTKVAAVSRKTN---TTTHEV 178
           +  EE  ++ E  K +A VG++G PNAGKS++I+ +     K+A      +   TT    
Sbjct: 143 EPGEERWLRLE-LKLLADVGLVGLPNAGKSTLISAVSAAKPKIA------DYPFTTLVPN 195

Query: 179 LGVMTKADTQICIF-DTPGLMLNKS---GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234
           LGV+   D +  +  D PGL+   S   G  H+ +K  +E          VL+ + D   
Sbjct: 196 LGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLK-HIERT-------RVLLHLID--- 244

Query: 235 HLTSPDSR----VIRLIERMGKQAPPK---QKRVLCMNKVDLVTKKKDLLKVAEQFKHLP 287
            ++  D         +I    K+  P+   + R++ +NK+DL+  +++L ++ ++ K   
Sbjct: 245 -ISPEDGSDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD-EEELEELLKELKEAL 302

Query: 288 GYERIFMTSGLKGAGLKALTQYLMEQ 313
           G   +F  S L G GL  L   L E 
Sbjct: 303 GKP-VFPISALTGEGLDELLYALAEL 327

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329

>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed

 Score = 55.5 bits (135), Expect = 1e-08
 Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 60/201 (29%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSR-KTN------TTTHEVLGVMTKADTQICIF-D 193
           VG++G PNAGKS++I        +AVS  K        TT H  LGV+   D +  +  D
Sbjct: 161 VGLVGLPNAGKSTLI--------SAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIAD 212

Query: 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNL---F----E---VLMVVFDVHRHLTSPDSRV 243
            PGL               +E A     L   F    E   +L+ + D+       D + 
Sbjct: 213 IPGL---------------IEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKT 257

Query: 244 IR---------LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294
           IR         L ++          R+L +NK+DL+ ++++  K A       G   +F+
Sbjct: 258 IRNELEKYSPELADK---------PRILVLNKIDLLDEEEEREKRAALELAALG-GPVFL 307

Query: 295 TSGLKGAGLKALTQYLMEQFK 315
            S + G GL  L + L E  +
Sbjct: 308 ISAVTGEGLDELLRALWELLE 328

Length = 335

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199
           +G++G PN GKSS+IN +VG+K  +VS     T H     +      I + D PGL+ 
Sbjct: 85  IGLVGYPNVGKSSLINALVGSKKVSVSSTPGKTKHFQTIFLEP---GITLCDCPGLVF 139

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only]

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 30/171 (17%)

Query: 101 FQEEEEE----RKHRALAK--ALLQAALERQEEEEEEVKEEDQKS--------VA----- 141
            +  EEE     K++A      LL+A L    EE E+ K    KS        V      
Sbjct: 8   IKAIEEEIARTPKNKATEHHIGLLKAKLAELREELEKRK---SKSGGGGSGFAVKKSGDA 64

Query: 142 -VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200
            V ++G P+ GKS+++N +  TK         TT   V G++     QI + D PG++  
Sbjct: 65  TVALVGFPSVGKSTLLNKLTNTKSEVADYPF-TTLEPVPGMLEYKGAQIQLLDLPGIIEG 123

Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG 251
            S       + R     S     +++++V DV       D  + R +E +G
Sbjct: 124 AS-----SGRGRGRQVLSVARNADLIIIVLDVFEDPHHRD-IIERELEDVG 168

Length = 365

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 109 KHRALAKALLQAALERQEEEEEE-VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV 167
           K+    K LL+ A +  +E E+   K    + +   ++G PN GKS++IN + G KVA V
Sbjct: 84  KNGKGVKKLLKKAKKLLKENEKLKAKGLLPRPLRAMVVGIPNVGKSTLINRLRGKKVAKV 143

Query: 168 SRKTNTTTHEVLGVM-TKADTQICIFDTPGLM 198
             K   T     G    +    I + DTPG++
Sbjct: 144 GNKPGVTR----GQQWIRIGPNIELLDTPGIL 171

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score = 52.1 bits (126), Expect = 8e-08
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 29/132 (21%)

Query: 76  WDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEE 135
           W + + E+  + +    A+KGK             + + KA  +   E+ E+ +   K  
Sbjct: 69  WLKYFEEKGIKALAIN-AKKGK-----------GVKKIIKAAKKLLKEKNEKLKA--KGL 114

Query: 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------DTQI 189
             + +   I+G PN GKS++IN + G KVA V  +         GV TK          +
Sbjct: 115 LNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRP--------GV-TKGQQWIKLSDGL 165

Query: 190 CIFDTPGLMLNK 201
            + DTPG++  K
Sbjct: 166 ELLDTPGILWPK 177

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only]

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 23/186 (12%)

Query: 138 KSVA-VGIIGAPNAGKSSIINYMVGTKVAAVSRKTN----TTTHEVLGVMTKADTQICIF 192
           K +A VG++G PNAGKS++++      V+A   K      TT    LGV+     +  + 
Sbjct: 157 KLLADVGLVGLPNAGKSTLLS-----AVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVV 211

Query: 193 -DTPGLMLNKS---GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248
            D PGL+   S   G   + ++  +E   + V L  + +   D       P      +  
Sbjct: 212 ADIPGLIEGASEGVGLGLRFLR-HIER--TRVLLHVIDLSPIDGR----DPIEDYQTIRN 264

Query: 249 RMGKQAPP--KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306
            + K +P   ++ R++ +NK+DL   +++L ++ +      G+E  ++ S L   GL  L
Sbjct: 265 ELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDEL 324

Query: 307 TQYLME 312
            + L E
Sbjct: 325 LRALAE 330

Length = 369

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH--EVLGVMTKADTQICIFDT 194
           + S+ VG++G PN GKSS+IN +  ++   V      T    EV       D  + + D+
Sbjct: 114 KTSITVGVVGYPNVGKSSVINSLKRSRACNVGATPGVTKSMQEV-----HLDKHVKLLDS 168

Query: 195 PG 196
           PG
Sbjct: 169 PG 170

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 51.6 bits (125), Expect = 2e-07
 Identities = 48/235 (20%), Positives = 86/235 (36%), Gaps = 69/235 (29%)

Query: 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS------VAVGIIGAPNAGKSS 154
           F EE+ E     L+   +   LE    E E +    ++       + V I G PN GKSS
Sbjct: 175 FPEEDIE----FLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSS 230

Query: 155 IINYMVGTKVAAVSRKTNT--TTHEVL-------GVMTKADTQICIFDTPGLMLNKSGYS 205
           ++N ++G + A V   T+   TT +V+       G+  +      + DT G+        
Sbjct: 231 LLNALLGEERAIV---TDIAGTTRDVIEEHINLDGIPLR------LIDTAGI-------- 273

Query: 206 HKDVKVR----------VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255
                 R          +E +  A+   +++++V D    LT  D  ++        +  
Sbjct: 274 ------RETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEIL--------EEL 319

Query: 256 PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
             +  ++ +NK DL  +               G   I   S   G G+  L + +
Sbjct: 320 KDKPVIVVLNKADLTGEIDLE--------EENGKPVI-RISAKTGEGIDELREAI 365

Length = 449

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 20/158 (12%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT---NTTTHEVLGVMTKADTQICIFD 193
            K   + ++G    GK++++N +VG +       T         +         Q  ++D
Sbjct: 3   MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQ--LWD 60

Query: 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNL-FEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           T G                  S           +++V+D     +S +      +E + +
Sbjct: 61  TAGQ-------------EEYRSLRPEYYRGANGILIVYDSTLRESSDELT-EEWLEELRE 106

Query: 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290
            AP     +L  NK+DL  ++    ++  Q        
Sbjct: 107 LAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLL 144

Length = 219

>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 38/211 (18%)

Query: 125 QEEEEEEVKEEDQKSVA-VGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------TTTH 176
              EE E+K E  K +A VG++G PNAGKS+ I         AVS           TT  
Sbjct: 145 TPGEERELKLE-LKLLADVGLLGLPNAGKSTFIR--------AVSAAKPKVADYPFTTLV 195

Query: 177 EVLGVMTKADTQ-ICIFDTPGLMLNKS---GYSHKDVKVRVESAWSAVNLFEVLMVVFDV 232
             LGV+   D +   + D PGL+   S   G   + +K  +E     V L  + +   D 
Sbjct: 196 PNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK-HLER--CRVLLHLIDIAPID- 251

Query: 233 HRHLTSPDSRVI---RLIERMGKQAPPK--QK-RVLCMNKVDLVTKKKDLLKVAEQFKHL 286
                   S  +   R+I    ++  PK  +K R L  NK+DL+ +++   +     + L
Sbjct: 252 -------GSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL 304

Query: 287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317
                +++ S   G G+K L   LM   ++ 
Sbjct: 305 GWEGPVYLISAASGLGVKELCWDLMTFIEEN 335

Length = 390

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 26/202 (12%)

Query: 126 EEEEEEVKEED----------QKSVA-VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT 174
           +E +E++ E             K+V  V I+G PN GKS+++N ++G + A V      T
Sbjct: 251 DEGDEDLLEGSGFVAGDEKAGPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVT 310

Query: 175 THEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234
              V      A T   + DT G   +  G     +      A  AV+L + ++ V D   
Sbjct: 311 RDRVSYDAEWAGTDFKLVDTGGWEADVEGI-DSAI---ASQAQIAVSLADAVVFVVDGQV 366

Query: 235 HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294
            LTS D R++R++ R GK        VL +NK+D    + D    AE +K   G    + 
Sbjct: 367 GLTSTDERIVRMLRRAGKPV------VLAVNKIDDQASEYD---AAEFWKL--GLGEPYP 415

Query: 295 TSGLKGAGLKALTQYLMEQFKD 316
            S + G G+  L    ++  K 
Sbjct: 416 ISAMHGRGVGDLLDEALDSLKV 437

Length = 712

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 24/90 (26%), Positives = 42/90 (46%)

Query: 115 KALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT 174
           +    A   +  E E ++K+E   S+ + ++G    GKSS IN + G +  +VS   + T
Sbjct: 7   QFFPDATQTKLHELEAKLKKELDFSLTILVLGKTGVGKSSTINSIFGERKVSVSAFQSET 66

Query: 175 THEVLGVMTKADTQICIFDTPGLMLNKSGY 204
                   T    ++ I DTPGL+ ++   
Sbjct: 67  LRPREVSRTVDGFKLNIIDTPGLLESQDQR 96

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDT 194
            D K V VG++G P  GKSSIIN + G   A+ S    +  +     + + D++I + DT
Sbjct: 95  IDGKPVIVGVVGYPKVGKSSIINALKGRHSASTSPIPGSPGYTKGIQLVRIDSKIYLIDT 154

Query: 195 PG 196
           PG
Sbjct: 155 PG 156

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 29/127 (22%)

Query: 76  WDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEE 135
           W E + E+  + +    A+KG+             + + KA  +   E+ E  + +    
Sbjct: 72  WIEYFEEQGIKALAIN-AKKGQ-----------GVKKILKAAKKLLKEKNERRKAKGMRP 119

Query: 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------DTQI 189
             +++   IIG PN GKS++IN + G K+A    +         GV TKA         +
Sbjct: 120 --RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRP--------GV-TKAQQWIKLGKGL 168

Query: 190 CIFDTPG 196
            + DTPG
Sbjct: 169 ELLDTPG 175

Length = 287

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 39/190 (20%)

Query: 142 VGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTH----EVLGVMTKADTQICIFDTPG 196
           V   G  N GKSS+IN +   K +A  S+    T       V         +  + D PG
Sbjct: 2   VAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNV-------GDKFRLVDLPG 54

Query: 197 LMLNKSGYSHKDVKVRVESAWSAV---------NLFEVLMVVFDVHRHLTSPDSRVIRLI 247
                 GY+    +VR +  W  +         NL  V++++ D     T  D  ++  +
Sbjct: 55  Y-----GYAKVSKEVREK--WGKLIEEYLENRENLKGVVLLI-DARHGPTPIDLEMLEFL 106

Query: 248 ERMGKQAPPKQKRVLCMNKVDLVTK---KKDLLKVAEQFKHLPGYERIFMTSGLKGAGLK 304
           E +G   P     ++ + K D + K    K L K+ E+         + + S  KG G+ 
Sbjct: 107 EELGI--PF----LIVLTKADKLKKSELAKVLKKIKEELNLFNILPPVILFSSKKGTGID 160

Query: 305 ALTQYLMEQF 314
            L + L+ ++
Sbjct: 161 EL-RALIAEW 169

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 6/119 (5%)

Query: 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQIC 190
           ++KEED  S+ + ++G    GKSS +N ++G ++A VS   +     ++   T+A   + 
Sbjct: 30  KLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLN 89

Query: 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV--FDVHRHLTSPDSRVIRLI 247
           I DTPGL+  + GY + D  V +   +      +VL+ V   D +R + + D +VIR I
Sbjct: 90  IIDTPGLI--EGGYIN-DQAVNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAI 144

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 22/161 (13%)

Query: 117 LLQAALERQEEEEEEVKEED-QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT 175
           LL A L    E           + VA  ++G PN GKSS++N + G + + V     TT 
Sbjct: 190 LLDAVLAALPEVPRVGSASGGPRRVA--LVGKPNVGKSSLLNKLAGEERSVVDDVAGTTV 247

Query: 176 HEVLGVMTKADTQICIFDTPGL---MLNKSG---YSHKDVKVRVESAWSAVNLFEVLMVV 229
             V  ++          DT GL   +   SG   Y+     +R  +A  A    EV +V+
Sbjct: 248 DPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYA----SLRTHAAIEAA---EVAVVL 300

Query: 230 FDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270
            D    ++  D RV+ ++   G+        VL  NK DLV
Sbjct: 301 IDASEPISEQDQRVLSMVIEAGRAL------VLAFNKWDLV 335

Length = 472

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 23/180 (12%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL---M 198
           V ++G PN GKSS++N +   + A V+    TT   V  ++          DT G+    
Sbjct: 453 VALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQ 512

Query: 199 LNKSG---YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255
              +G   YS     +R ++A       E+ + +FD  + ++  D +V+ +    G+   
Sbjct: 513 HKLTGAEYYSS----LRTQAAIERS---ELALFLFDASQPISEQDLKVMSMAVDAGRAL- 564

Query: 256 PKQKRVLCMNKVDLVTK-KKDLLK--VAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
                VL  NK DL+ + ++  L+     +F  +    R+ + S   G     L   + E
Sbjct: 565 -----VLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNL-SAKTGWHTNRLAPAMQE 618

Length = 712

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 46.2 bits (111), Expect = 1e-05
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 19/175 (10%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--THEVLGVMTKADTQICIFDTPGLML 199
           V I+G PN GKS++ N + G + A V+     T       G       +  + DT G+  
Sbjct: 4   VAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIY--GEAEWLGREFILIDTGGIEP 61

Query: 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK 259
           +  G+  + ++ + E A    ++  +L VV D    LT  D  + +++ +  K       
Sbjct: 62  DDDGFEKQ-IREQAELAIEEADV--ILFVV-DGRAGLTPADEEIAKILRKSNK------P 111

Query: 260 RVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
            +L +NKVD      D    A +F  L G    +  S   G G+  L   ++E+ 
Sbjct: 112 VILVVNKVD----GPDEEADAYEFYSL-GLGEPYPISAEHGRGIGDLLDAILEEL 161

Length = 435

>gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG)

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           V ++G P+ GKS++++ +  TK    + +  TT   V GVM     +I + D PG+
Sbjct: 3   VALVGFPSVGKSTLLSKLTNTKSEVAAYEF-TTLTCVPGVMEYKGAKIQLLDLPGI 57

The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 119 QAALERQEEEEEEVK-EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE 177
           Q  L+ + E  ++    + +K + VG++G PN GKSS IN ++      V     TT  +
Sbjct: 70  QGILKLKAEITKQKLKLKYKKGIRVGVVGLPNVGKSSFINALLNKFKLKVGSIPGTTKLQ 129

Query: 178 VLGVMTKADTQICIFDTPGL 197
                 K D +I ++DTPG+
Sbjct: 130 QD---VKLDKEIYLYDTPGI 146

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 39/182 (21%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
            K + V ++G PN GK+++ N + G     V      T  +  G +     +I I D PG
Sbjct: 1   MKKLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPG 59

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNL-----FEVLMVVFD---VHRHL--TSPDSRVIRL 246
              + + YS +D KV       A +       ++++ V D   + R+L  T      ++L
Sbjct: 60  -TYSLTAYS-EDEKV-------ARDFLLEGKPDLIVNVVDATNLERNLYLT------LQL 104

Query: 247 IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTSGLKGAGLK 304
           +E +G         +L +N +D   K+   + + +  K L  P    +  T   +G GL+
Sbjct: 105 LE-LGI------PMILALNMIDEAKKRGIRIDIEKLSKLLGVP----VVPTVAKRGEGLE 153

Query: 305 AL 306
            L
Sbjct: 154 EL 155

Length = 653

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 44/198 (22%)

Query: 142 VGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTTHE-------VLGVMTK--AD 186
           VG+IG  + GK+++   ++        +        +T   E         GV+      
Sbjct: 2   VGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPK 61

Query: 187 TQICIFDTPGLMLNKSGYSHKD-VKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIR 245
            +I   DTPG         H+D  K  V     A    +  ++V D +  +       + 
Sbjct: 62  RRINFIDTPG---------HEDFSKETVRGLAQA----DGALLVVDANEGVEPQTREHLN 108

Query: 246 LIERMGKQAPPKQKRVLCMNKVDLV--TKKKDLLKVAEQFKHLPGYE-------RIFMTS 296
           +    G         ++ +NK+D V      ++L+  ++   L G+         I   S
Sbjct: 109 IALAGGL------PIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPIS 162

Query: 297 GLKGAGLKALTQYLMEQF 314
            L G G++ L   ++E  
Sbjct: 163 ALTGEGIEELLDAIVEHL 180

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV 167
           D+K ++VG IG PN GKSS+IN +   KV  V
Sbjct: 99  DKKQISVGFIGYPNVGKSSVINTLRSKKVCKV 130

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|237045 PRK12296, obgE, GTPase CgtA; Reviewed

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 20/97 (20%)

Query: 112 ALAKALLQA---ALERQEEEEEEVKEEDQKSVA-VGIIGAPNAGKSSIINYMVGTKVAAV 167
           ALA    +A   AL  +  EE ++  E  KSVA VG++G P+AGKSS+I        +A+
Sbjct: 129 ALASKARKAPGFALLGEPGEERDLVLE-LKSVADVGLVGFPSAGKSSLI--------SAL 179

Query: 168 SR---KTN----TTTHEVLGVMTKADTQICIFDTPGL 197
           S    K      TT    LGV+   DT+  + D PGL
Sbjct: 180 SAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGL 216

Length = 500

>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 13/168 (7%)

Query: 102 QEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVG 161
            ++E E +            L+ ++  E E  E     V V ++G PN GKS+++N ++G
Sbjct: 2   DDDEAEMRADGTWADESDWELDDEDLAELEAAEGGPLPV-VAVVGRPNVGKSTLVNRILG 60

Query: 162 TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV-ESAWSAV 220
            + A V      T   V         +  + DT G   +  G     ++  V E A  A+
Sbjct: 61  RREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKG-----LQASVAEQAEVAM 115

Query: 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD 268
              + ++ V D     T+ D  V R++ R GK        +L  NKVD
Sbjct: 116 RTADAVLFVVDATVGATATDEAVARVLRRSGKPV------ILAANKVD 157

Length = 472

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 17/91 (18%)

Query: 225 VLMVVFDVHRHLTSPDSRVIRLIERM-----GKQAPPKQKRVLCMNKVDLVTKKKDLLKV 279
            +++VF +     +      RL++R           P    V+ +NK DLV   ++L ++
Sbjct: 5   QVLIVFSLKEPFFNL-----RLLDRYLVAAEASGIEP----VIVLNKADLVD-DEELEEL 54

Query: 280 AEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310
            E ++ L GY  +   S   G GL  L + L
Sbjct: 55  LEIYEKL-GY-PVLAVSAKTGEGLDELRELL 83

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 15/82 (18%)

Query: 124 RQEEEEEEVKE--EDQKSVAVGIIGAPNAGKSSIINYMVGT---KVAAVSRKTN----TT 174
           +  E  +E++E  + + SV VG  G    GKS+++N ++         +S K      TT
Sbjct: 71  KTGEGLDELRELLKGKTSVLVGQSGV---GKSTLLNALLPELVLATGEISEKLGRGRHTT 127

Query: 175 THEVLGVMTKADTQICIFDTPG 196
           TH  L           I DTPG
Sbjct: 128 THREL-FPLPGGG--LIIDTPG 146

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 144 IIGAPNAGKSSIINYMVG-----TKVAAVSRKTNTTTHEVLG-VMTKADTQICIFDTPGL 197
           ++G  N GKSS+IN ++        V   S    TT    L  +    D    ++DTPG+
Sbjct: 159 VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT----LDLIEIPLDDGHSLYDTPGI 214

Query: 198 M 198
           +
Sbjct: 215 I 215

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 53/184 (28%)

Query: 142 VGIIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADTQICIFDT 194
           + ++G PN GK+++ N + G    V       V +K         G       +I I D 
Sbjct: 3   IALVGNPNVGKTTLFNALTGARQHVGNWPGVTVEKKE--------GTFKYKGYEIEIVDL 54

Query: 195 PGLMLNKSGYSHKDVKVRVESAWSAVN--LFE---VLMVVFDV-----HRHLTSPDSRVI 244
           PG   + S YS ++ KV       A +  L E   V++ V D      + +LT      +
Sbjct: 55  PG-TYSLSPYS-EEEKV-------ARDYLLEEKPDVIINVVDATNLERNLYLT------L 99

Query: 245 RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTSGLKGAG 302
           +L+E +G         V+ +N +D   KK   + + +  + L  P    +  TS  KG G
Sbjct: 100 QLLE-LGI------PVVVALNMMDEAEKKGIKIDIKKLSELLGVP----VVPTSARKGEG 148

Query: 303 LKAL 306
           +  L
Sbjct: 149 IDEL 152

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 16/80 (20%)

Query: 130 EEVKEEDQKSVAVGIIGAPNAGKSSIIN------YMVGTKVAAVSRKT-----NTTTHEV 178
           EE+K+  +    V ++GA N GKS++IN             A V R T      TT    
Sbjct: 116 EEIKKLAKYRGDVYVVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTT---- 171

Query: 179 LGVMT-KADTQICIFDTPGL 197
           LG++         ++DTPG+
Sbjct: 172 LGLIKIPLGEGKKLYDTPGI 191

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 55/185 (29%)

Query: 144 IIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
           ++G PN GK+++ N + G   KV       V +K         G       +I I D PG
Sbjct: 2   LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKE--------GEFKLGGKEIEIVDLPG 53

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNL-----FEVLMVVFD---VHRHL--TSPDSRVIRL 246
              + + YS +D KV       A +       ++++ V D   + R+L  T      ++L
Sbjct: 54  -TYSLTPYS-EDEKV-------ARDFLLGEEPDLIVNVVDATNLERNLYLT------LQL 98

Query: 247 IERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERIFMTSGLKGAGL 303
           +E +G         V+ +N +D   K+    DL K++E    +P    +  TS  KG G+
Sbjct: 99  LE-LGL------PVVVALNMIDEAEKRGIKIDLDKLSELLG-VP----VVPTSARKGEGI 146

Query: 304 KALTQ 308
             L  
Sbjct: 147 DELLD 151

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 33/190 (17%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199
           + ++G  +AGKS+++N ++G +V    V+  T   T    G+       + + DTPG  L
Sbjct: 3   LAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVITVLRYGL----LKGVVLVDTPG--L 56

Query: 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK 259
           N S   H       E   S +   + ++ V    + LT  +   ++ I          +K
Sbjct: 57  N-STIEHHT-----EITESFLPRADAVIFVLSADQPLTESEREFLKEI-----LKWSGKK 105

Query: 260 RVLCMNKVDLVTKKKDLLKVAEQFKH-------LPGYERIFMTS------GLKGAGLKAL 306
               +NK+DL++ +++L +V E  +          G  RIF  S             + L
Sbjct: 106 IFFVLNKIDLLS-EEELEEVLEYSREELGVLELGGGEPRIFPVSAKEALEARLQGDEELL 164

Query: 307 TQYLMEQFKD 316
            Q   E+ ++
Sbjct: 165 EQSGFEELEE 174

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 42/196 (21%)

Query: 142 VGIIGAPNAGKSSII------NYMVGTKVAAVSRKTNTTTHEVLGVMT---------KAD 186
           +GIIG  + GK+++          +  + A  +R  +    E    +T            
Sbjct: 6   IGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSFETKK 65

Query: 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL 246
             I I DTPG         H D    +    S  +    ++VV D    +       + L
Sbjct: 66  RLINIIDTPG---------HVDFTKEMIRGASQADG--AILVV-DAVEGVMPQTREHLLL 113

Query: 247 IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ----FKHLPGYER----IFMTSGL 298
            + +G         ++ +NK+D V    +L +V E+         G+      +   S L
Sbjct: 114 AKTLGV------PIIVFINKIDRVD-DAELEEVVEEISRELLEKYGFGGETVPVVPGSAL 166

Query: 299 KGAGLKALTQYLMEQF 314
            G G+  L + L    
Sbjct: 167 TGEGIDELLEALDLYL 182

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 21/130 (16%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQIC-IFDTPGLMLN 200
           V +IG   +GKSS+++ +VG +      +    T  V  +    DT +  I+D  G    
Sbjct: 2   VVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGG---- 57

Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQ 258
                  +  + ++ A       + +++V+D    LT  +S   V RLI  +        
Sbjct: 58  -REELKFEHIIFMKWA-------DAILLVYD----LTDRESLNEVSRLIAWLPNLRKLGG 105

Query: 259 K--RVLCMNK 266
           K   +L  NK
Sbjct: 106 KIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 11/164 (6%)

Query: 143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202
           G++G PN GKS++++ +   KV   S    T    V          I I D PGL+    
Sbjct: 1   GLVGLPNVGKSTLLSALTSAKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPGLLDG-- 58

Query: 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDV---HRHLTSPDSRVIRLIERMGKQAPPKQK 259
             + +  +   E   + +   ++++ V D           D + +             + 
Sbjct: 59  --ASEG-RGLGEQILAHLYRSDLILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLKNKP 115

Query: 260 RVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303
            ++  NK+D+ +  ++ LK  +  K   G   +  TS L   GL
Sbjct: 116 EMIVANKIDMAS--ENNLKRLKLDKLKRGI-PVVPTSALTRLGL 156

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only]

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 122 LERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIIN---YMVGTKVAAVSRKTNTTTHEV 178
            ER  E+   ++  +++ V V ++GA  AGKSS+IN        +V+ V   T+ TT   
Sbjct: 22  SERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR 81

Query: 179 LGVMTKADTQICIFDTPGL 197
           L    +      ++DTPGL
Sbjct: 82  LSYDGENLV---LWDTPGL 97

Length = 296

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 20/102 (19%)

Query: 225 VLMVV--FDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LCMNKVDLVTKKKDLLKVAE 281
           V+ VV  FD    L      +  LI           K V L  NK+DL+ K     ++ +
Sbjct: 37  VVHVVDIFDFPGSL---IPGLAELI---------GAKPVILVGNKIDLLPKDVKPNRLKQ 84

Query: 282 QFKHLPG-----YERIFMTSGLKGAGLKALTQYLMEQFKDLG 318
             K          + + + S  KG G++ L + + +  K  G
Sbjct: 85  WVKKRLKIGGLKIKDVILVSAKKGWGVEELIEEIKKLAKYRG 126

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
COG1159	298	Era GTPase [General function prediction only]	99.95
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.95
PRK11058	426	GTPase HflX; Provisional	99.94
COG2262	411	HflX GTPases [General function prediction only]	99.94
COG1160	444	Predicted GTPases [General function prediction onl	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.93
PRK03003	472	GTP-binding protein Der; Reviewed	99.93
COG0486	454	ThdF Predicted GTPase [General function prediction	99.93
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.92
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.92
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.92
PRK15494	339	era GTPase Era; Provisional	99.92
COG1160	444	Predicted GTPases [General function prediction onl	99.92
PRK00089	292	era GTPase Era; Reviewed	99.92
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.91
PRK00093	435	GTP-binding protein Der; Reviewed	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.91
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.9
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.9
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.9
PRK12299	335	obgE GTPase CgtA; Reviewed	99.9
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.9
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.9
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.9
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.89
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.89
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.89
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.89
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.89
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.89
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.89
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.89
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.89
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.89
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.89
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.89
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.88
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.88
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.88
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.88
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.88
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.88
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.88
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.88
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.88
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.88
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.88
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.88
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.88
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.88
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.88
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.88
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.88
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.88
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.88
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.87
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.87
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.87
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.87
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.87
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.87
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.87
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.87
PRK12297	424	obgE GTPase CgtA; Reviewed	99.87
PRK12298	390	obgE GTPase CgtA; Reviewed	99.87
PTZ00369	189	Ras-like protein; Provisional	99.87
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.87
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.87
PLN03118	211	Rab family protein; Provisional	99.87
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.87
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.87
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.87
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.87
PLN03110	216	Rab GTPase; Provisional	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.87
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.87
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.87
PRK12296	500	obgE GTPase CgtA; Reviewed	99.86
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.86
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.86
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.86
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.86
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.86
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
KOG0394	210	consensus Ras-related GTPase [General function pre	99.86
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.86
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.86
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.86
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.86
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.86
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.86
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	99.86
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.86
COG1161	322	Predicted GTPases [General function prediction onl	99.86
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.86
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.86
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.86
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.85
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.85
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.85
PLN03108	210	Rab family protein; Provisional	99.85
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.85
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.85
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.85
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.85
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.85
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.85
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.85
PLN00223	181	ADP-ribosylation factor; Provisional	99.85
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.85
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.85
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.85
KOG2484	435	consensus GTPase [General function prediction only	99.85
PRK04213	201	GTP-binding protein; Provisional	99.85
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.85
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.85
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.85
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.85
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.85
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.84
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.84
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.84
PTZ00133	182	ADP-ribosylation factor; Provisional	99.84
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.84
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.84
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.84
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.84
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.84
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.84
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.84
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.84
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.83
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.83
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.83
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.83
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.83
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.83
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.83
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.83
cd00881	189	GTP_translation_factor GTP translation factor fami	99.83
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.83
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.83
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.82
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.82
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.82
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.82
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.82
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.82
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.82
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.82
COG0218	200	Predicted GTPase [General function prediction only	99.82
COG1084	346	Predicted GTPase [General function prediction only	99.81
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.81
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.81
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.81
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.81
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.8
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.8
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.8
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.8
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.8
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.79
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.79
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.78
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.78
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.78
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.78
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.77
KOG0410	410	consensus Predicted GTP binding protein [General f	99.77
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.77
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.77
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	99.77
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.76
COG0536	369	Obg Predicted GTPase [General function prediction	99.76
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.76
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.75
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.75
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.75
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.75
KOG2423	572	consensus Nucleolar GTPase [General function predi	99.75
KOG0395	196	consensus Ras-related GTPase [General function pre	99.75
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.75
PRK12317	425	elongation factor 1-alpha; Reviewed	99.74
COG1163	365	DRG Predicted GTPase [General function prediction	99.74
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.74
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.74
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.74
PRK05306	787	infB translation initiation factor IF-2; Validated	99.74
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.73
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.73
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.73
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.72
CHL00189	742	infB translation initiation factor 2; Provisional	99.72
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.72
PRK09866	741	hypothetical protein; Provisional	99.71
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.7
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.7
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.7
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.7
COG3596	296	Predicted GTPase [General function prediction only	99.7
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.7
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.69
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.69
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.68
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.68
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.68
CHL00071	409	tufA elongation factor Tu	99.67
PRK12736	394	elongation factor Tu; Reviewed	99.67
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.67
PRK12735	396	elongation factor Tu; Reviewed	99.66
PRK05433	600	GTP-binding protein LepA; Provisional	99.66
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.66
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.65
COG1100	219	GTPase SAR1 and related small G proteins [General	99.65
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.65
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.65
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.64
PRK12289	352	GTPase RsgA; Reviewed	99.64
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.64
PRK09602	396	translation-associated GTPase; Reviewed	99.64
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.63
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.63
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.62
PRK12288	347	GTPase RsgA; Reviewed	99.62
PRK00049	396	elongation factor Tu; Reviewed	99.62
PLN03127	447	Elongation factor Tu; Provisional	99.62
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.62
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.61
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.61
PRK10218	607	GTP-binding protein; Provisional	99.61
PRK04004	586	translation initiation factor IF-2; Validated	99.61
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.6
PTZ00099	176	rab6; Provisional	99.6
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.6
COG1162	301	Predicted GTPases [General function prediction onl	99.6
PLN03126	478	Elongation factor Tu; Provisional	99.59
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.58
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.58
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.58
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.58
PLN00023	334	GTP-binding protein; Provisional	99.57
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.57
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.57
PTZ00258	390	GTP-binding protein; Provisional	99.56
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.55
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.55
PTZ00141	446	elongation factor 1- alpha; Provisional	99.55
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.54
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.54
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.54
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.54
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.54
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.53
KOG1145	683	consensus Mitochondrial translation initiation fac	99.53
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.53
PRK12739	691	elongation factor G; Reviewed	99.52
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.52
PRK00098	298	GTPase RsgA; Reviewed	99.51
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.5
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.49
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.49
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.49
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.49
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.48
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.48
PRK00007	693	elongation factor G; Reviewed	99.48
PRK13768	253	GTPase; Provisional	99.47
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.47
COG2229	187	Predicted GTPase [General function prediction only	99.47
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.47
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.47
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.46
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.46
PRK13351	687	elongation factor G; Reviewed	99.45
PLN00043	447	elongation factor 1-alpha; Provisional	99.45
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.45
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.43
PRK09601	364	GTP-binding protein YchF; Reviewed	99.42
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.42
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.41
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.41
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.39
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.38
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.38
PRK12740	668	elongation factor G; Reviewed	99.37
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.36
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.35
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.35
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.34
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.34
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.34
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.33
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.32
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.32
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.31
PRK13796	365	GTPase YqeH; Provisional	99.3
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.29
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.28
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.25
PRK14845	1049	translation initiation factor IF-2; Provisional	99.25
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.24
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.24
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.23
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.22
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.22
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.21
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.19
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.18
KOG1673	205	consensus Ras GTPases [General function prediction	99.17
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.16
PTZ00416	836	elongation factor 2; Provisional	99.16
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.15
PRK07560	731	elongation factor EF-2; Reviewed	99.14
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.13
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.12
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.11
KOG2486	320	consensus Predicted GTPase [General function predi	99.09
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.08
KOG0090	238	consensus Signal recognition particle receptor, be	99.08
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.08
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.06
PRK01889	356	GTPase RsgA; Reviewed	99.06
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.04
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.03
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.02
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.89
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.88
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.85
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.84
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.82
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.81
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.76
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.74
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.73
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.72
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.69
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.69
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.67
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.66
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.66
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.63
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.62
PRK10416	318	signal recognition particle-docking protein FtsY;	98.61
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.61
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.59
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.58
PRK14974	336	cell division protein FtsY; Provisional	98.55
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.54
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.53
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.52
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.5
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.5
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.46
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.45
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.42
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.4
PRK00098	298	GTPase RsgA; Reviewed	98.37
PRK12289	352	GTPase RsgA; Reviewed	98.37
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.37
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.37
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.37
COG0523	323	Putative GTPases (G3E family) [General function pr	98.37
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.36
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.36
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.34
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.32
PRK13796	365	GTPase YqeH; Provisional	98.31
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.3
cd03112	158	CobW_like The function of this protein family is u	98.3
KOG0460	449	consensus Mitochondrial translation elongation fac	98.29
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.26
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.26
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.25
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.25
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.21
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.21
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.18
PRK12288	347	GTPase RsgA; Reviewed	98.18
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.15
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.15
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.15
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.14
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.14
KOG1143	591	consensus Predicted translation elongation factor	98.12
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.12
cd03114	148	ArgK-like The function of this protein family is u	98.11
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.1
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.09
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.06
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.06
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.05
KOG1533	290	consensus Predicted GTPase [General function predi	98.05
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.01
PRK10867	433	signal recognition particle protein; Provisional	97.97
KOG0082	354	consensus G-protein alpha subunit (small G protein	97.96
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.94
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.9
PRK01889	356	GTPase RsgA; Reviewed	97.89
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.89
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	97.88
TIGR00959	428	ffh signal recognition particle protein. This mode	97.88
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.84
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	97.73
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.71
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.68
COG3523	1188	IcmF Type VI protein secretion system component Va	97.68
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.67
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.64
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.61
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.54
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.5
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.47
KOG3887	347	consensus Predicted small GTPase involved in nucle	97.42
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.41
KOG0781	587	consensus Signal recognition particle receptor, al	97.4
KOG2484	435	consensus GTPase [General function prediction only	97.29
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.23
PRK13695	174	putative NTPase; Provisional	97.2
cd03110	179	Fer4_NifH_child This protein family's function is	97.15
cd03111	106	CpaE_like This protein family consists of proteins	97.13
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.08
cd02036	179	MinD Bacterial cell division requires the formatio	97.04
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.0
COG1162	301	Predicted GTPases [General function prediction onl	96.99
PF00004	132	AAA: ATPase family associated with various cellula	96.99
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.99
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	96.95
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.94
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	96.86
PRK14737	186	gmk guanylate kinase; Provisional	96.84
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.84
COG1161	322	Predicted GTPases [General function prediction onl	96.8
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.78
PRK14738	206	gmk guanylate kinase; Provisional	96.7
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.7
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.65
PHA02518	211	ParA-like protein; Provisional	96.6
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.6
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	96.57
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.56
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.56
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.54
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	96.53
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.52
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.51
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	96.49
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.42
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	96.42
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.35
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.3
PRK07261	171	topology modulation protein; Provisional	96.28
COG1341	398	Predicted GTPase or GTP-binding protein [General f	96.25
PRK00300	205	gmk guanylate kinase; Provisional	96.24
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.23
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.23
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.21
PRK08118	167	topology modulation protein; Reviewed	96.2
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.19
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.17
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.17
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.16
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.11
KOG2749	415	consensus mRNA cleavage and polyadenylation factor	96.09
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.08
PRK08233	182	hypothetical protein; Provisional	96.02
PRK05480	209	uridine/cytidine kinase; Provisional	96.01
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.94
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	95.92
cd02117	212	NifH_like This family contains the NifH (iron prot	95.89
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.87
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.86
PRK13849	231	putative crown gall tumor protein VirC1; Provision	95.86
smart00382	148	AAA ATPases associated with a variety of cellular	95.85
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.83
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	95.79
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.79
KOG4273	418	consensus Uncharacterized conserved protein [Funct	95.79
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.78
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	95.78
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.73
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.73
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.72
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	95.72
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.71
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.71
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.71
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.7
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.68
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.68

>COG1159 Era GTPase [General function prediction only]

Probab=99.95  E-value=1.5e-26  Score=201.35  Aligned_cols=171  Identities=32%  Similarity=0.450  Sum_probs=148.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +...|+++|.||||||||+|+|.|.+++.+++.+.||+....++...++..+.|+||||+..+..    .....+.+.++
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~----~l~~~m~~~a~   80 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH----ALGELMNKAAR   80 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch----HHHHHHHHHHH
Confidence            45568999999999999999999999999999999999999999999999999999999998744    44566788888


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|+|+..+.+..+..+.+.++.      ...|+++++||+|..++..........+.....+..++++||
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~------~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA  154 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPGDEFILEQLKK------TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISA  154 (298)
T ss_pred             HHhccCcEEEEEEeccccCCccHHHHHHHHhh------cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeec
Confidence            89999999999999988888877766666665      145799999999999876655677777777778889999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhcC
Q 020714          298 LKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++|.|++.|.+.+...+.+.-
T Consensus       155 ~~g~n~~~L~~~i~~~Lpeg~  175 (298)
T COG1159         155 LKGDNVDTLLEIIKEYLPEGP  175 (298)
T ss_pred             cccCCHHHHHHHHHHhCCCCC
Confidence            999999999999999988753

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.95  E-value=5.6e-27  Score=215.77  Aligned_cols=245  Identities=21%  Similarity=0.338  Sum_probs=163.1

Q ss_pred             ccCCCCCCCCCCCCCCCCChhhHHHHHHhhCCeE--EEeec--cccchhhhhH---------------------------
Q 020714           54 YFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRI--VFGEE--AQKGKLRIFQ---------------------------  102 (322)
Q Consensus        54 da~~p~~~~~k~dl~~~~~~~~w~~~~~~~~~~i--~f~~~--~~~~~~~~~~---------------------------  102 (322)
                      ++...++.++..+.|.++.++.|...+.+++..|  ||...  +.+++.++--                           
T Consensus        66 ~~~~vi~~~~l~p~q~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~  145 (351)
T TIGR03156        66 EADLVIFDHELSPSQERNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTR  145 (351)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHhCCcccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCCC
Confidence            4444444456667788888999998888888887  77776  7777777600                           


Q ss_pred             --HH-HHHHHHHHH--HHHHHHHHHHhhHHHHHHhhhhc--cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCcee
Q 020714          103 --EE-EEERKHRAL--AKALLQAALERQEEEEEEVKEED--QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT  175 (322)
Q Consensus       103 --~~-~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~--~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~  175 (322)
                        .+ ..+...+.+  ....+...++.....+...+..+  ...++|+++|+||||||||+|+|++.. ..+...+++|.
T Consensus       146 g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~  224 (351)
T TIGR03156       146 GPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATL  224 (351)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCcccc
Confidence              01 011111212  11222222222222222222222  456899999999999999999999987 45567778888


Q ss_pred             eeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhccc
Q 020714          176 HEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQ  253 (322)
Q Consensus       176 ~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~  253 (322)
                      +.....+.. ++..+.||||||+....+    +...+.+..++..+..+|++++|+|++++...... .+..++..+.. 
T Consensus       225 d~~~~~i~~~~~~~i~l~DT~G~~~~l~----~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~-  299 (351)
T TIGR03156       225 DPTTRRLDLPDGGEVLLTDTVGFIRDLP----HELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA-  299 (351)
T ss_pred             CCEEEEEEeCCCceEEEEecCcccccCC----HHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc-
Confidence            877666655 577999999999954322    34445588888889999999999999876443322 33455555543 


Q ss_pred             CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714          254 APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       254 ~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                        .+.|+++|+||+|+..... ..    ....  ...+++++||++|.|+++++++|.+.
T Consensus       300 --~~~piIlV~NK~Dl~~~~~-v~----~~~~--~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       300 --EDIPQLLVYNKIDLLDEPR-IE----RLEE--GYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             --CCCCEEEEEEeecCCChHh-HH----HHHh--CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence              2568999999999975322 11    1111  12358999999999999999999765

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK11058 GTPase HflX; Provisional

Probab=99.94  E-value=6.3e-26  Score=213.36  Aligned_cols=245  Identities=22%  Similarity=0.304  Sum_probs=161.3

Q ss_pred             CCCCCCCCCCCCCChhhHHHHHHhhCCeE--EEeec--cccchhhh------------------hH-----------HH-
Q 020714           59 TIDDPQNNNAAKKQEPTWDEKYRERTDRI--VFGEE--AQKGKLRI------------------FQ-----------EE-  104 (322)
Q Consensus        59 ~~~~~k~dl~~~~~~~~w~~~~~~~~~~i--~f~~~--~~~~~~~~------------------~~-----------~~-  104 (322)
                      ++.+...+.|.++.++.|...+.+++..|  ||...  +.+++.|+                  +.           .+ 
T Consensus        79 i~~~~lsp~q~~nle~~~~~~v~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~~g~ge~  158 (426)
T PRK11058         79 LFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGET  158 (426)
T ss_pred             EECCCCCHHHHHHHHHHHCCeEecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCCCCCChh
Confidence            33344555677888888988888888887  77776  88888877                  00           01 


Q ss_pred             HHHHHHHHHH--HHHHHHHHHhhHHHHHHhh--hhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEE
Q 020714          105 EEERKHRALA--KALLQAALERQEEEEEEVK--EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG  180 (322)
Q Consensus       105 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~--~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~  180 (322)
                      ..+...+.+.  ...+...++.....+...+  ......++|+++|+||||||||+|+|++.++. +...+++|.+....
T Consensus       159 ~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~  237 (426)
T PRK11058        159 QLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLR  237 (426)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceE
Confidence            1122222221  2222222222222222222  12223468999999999999999999998765 66778888887766


Q ss_pred             EEeeCC-ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCC
Q 020714          181 VMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQ  258 (322)
Q Consensus       181 ~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~  258 (322)
                      .+...+ ..+.+|||||+....   + +.....|..++..+..+|++++|+|++++...... .+..++..+...   +.
T Consensus       238 ~i~l~~~~~~~l~DTaG~~r~l---p-~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~---~~  310 (426)
T PRK11058        238 RIDVADVGETVLADTVGFIRHL---P-HDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAH---EI  310 (426)
T ss_pred             EEEeCCCCeEEEEecCcccccC---C-HHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC---CC
Confidence            555444 488999999995432   2 33345588888889999999999999875433332 244566666533   57


Q ss_pred             cEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          259 KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       259 p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      |+++|+||+|+........   ...  ..+.+.++++||++|.|+++|+++|.+.+..
T Consensus       311 pvIiV~NKiDL~~~~~~~~---~~~--~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        311 PTLLVMNKIDMLDDFEPRI---DRD--EENKPIRVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             CEEEEEEcccCCCchhHHH---HHH--hcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            8999999999975321111   111  1233335899999999999999999998854

>COG2262 HflX GTPases [General function prediction only]

Probab=99.94  E-value=2.8e-26  Score=207.08  Aligned_cols=252  Identities=20%  Similarity=0.298  Sum_probs=178.8

Q ss_pred             EccccCCCCCCCCCCCCCCCCChhhHHHHHHhhCCeE--EEeec--cccchhhh------------------hH------
Q 020714           51 DSSYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRI--VFGEE--AQKGKLRI------------------FQ------  102 (322)
Q Consensus        51 ~~~da~~p~~~~~k~dl~~~~~~~~w~~~~~~~~~~i--~f~~~--~~~~~~~~------------------~~------  102 (322)
                      +..++...++.+...+.+..+..+.|...+.++...|  ||...  +.+++.|+                  ++      
T Consensus        66 ~~~~ad~VIf~~~LsP~Q~~NLe~~l~~kVIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~Gggi  145 (411)
T COG2262          66 EETGADLVIFDHELSPSQLRNLEKELGVKVIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGI  145 (411)
T ss_pred             HhcCCCEEEECCcCCHHHHHHHHHHHCCEEEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCC
Confidence            3344555555556666777888888888888888887  77776  88888877                  11      


Q ss_pred             ------HHHHHHHHHHH--HHHHHHHHHHhhHHHHHHhhh--hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCC
Q 020714          103 ------EEEEERKHRAL--AKALLQAALERQEEEEEEVKE--EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN  172 (322)
Q Consensus       103 ------~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~  172 (322)
                            +...+..++.+  ....++..++..+..++..+.  .....+.|+++|++|+|||||+|+|++..... .+...
T Consensus       146 G~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~-~d~LF  224 (411)
T COG2262         146 GFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYV-ADQLF  224 (411)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeec-ccccc
Confidence                  11123333333  333445555555554444443  34567899999999999999999999876543 44455


Q ss_pred             ceeeeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcH-HHHHHHHHHh
Q 020714          173 TTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERM  250 (322)
Q Consensus       173 ~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~  250 (322)
                      .|.+++...+.. ++..+.+.||.||+...+    +.+...|++++++...+|++++|+|++++..... ..+...+.++
T Consensus       225 ATLdpttR~~~l~~g~~vlLtDTVGFI~~LP----~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el  300 (411)
T COG2262         225 ATLDPTTRRIELGDGRKVLLTDTVGFIRDLP----HPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEI  300 (411)
T ss_pred             ccccCceeEEEeCCCceEEEecCccCcccCC----hHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc
Confidence            555555554444 478999999999998766    7778889999999999999999999988733222 2566777777


Q ss_pred             cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          251 GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       251 ~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +..   ..|+|+|+||+|+......    ........+  ..+++||++|.|++.|.+.|.+.+..
T Consensus       301 ~~~---~~p~i~v~NKiD~~~~~~~----~~~~~~~~~--~~v~iSA~~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         301 GAD---EIPIILVLNKIDLLEDEEI----LAELERGSP--NPVFISAKTGEGLDLLRERIIELLSG  357 (411)
T ss_pred             CCC---CCCEEEEEecccccCchhh----hhhhhhcCC--CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence            755   4779999999998865431    122222222  58999999999999999999998874

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.93  E-value=7.5e-25  Score=200.77  Aligned_cols=248  Identities=26%  Similarity=0.309  Sum_probs=180.2

Q ss_pred             CCceEEEccccCCCCCC-C------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhhHHH
Q 020714           45 DCDSVFDSSYFRIPTID-D------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEE  104 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~~-~------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~  104 (322)
                      -+|+++=+.|++.-+.. .                  ||+|-.  ........+|.--...++..|+ .+.|...++   
T Consensus        83 eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~--~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl---  157 (444)
T COG1160          83 EADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL--KAEELAYEFYSLGFGEPVPISAEHGRGIGDLL---  157 (444)
T ss_pred             hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc--hhhhhHHHHHhcCCCCceEeehhhccCHHHHH---
Confidence            49999999999885544 2                  777755  2222333344333344555555 777777662   


Q ss_pred             HHHHHHHHHHHHHHHHHHHh--hHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEE
Q 020714          105 EEERKHRALAKALLQAALER--QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM  182 (322)
Q Consensus       105 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~  182 (322)
                                    +..++.  ..++.  .......+++|+++|-||||||||+|+|++.+...+++.+|||++.....+
T Consensus       158 --------------d~v~~~l~~~e~~--~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~  221 (444)
T COG1160         158 --------------DAVLELLPPDEEE--EEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEF  221 (444)
T ss_pred             --------------HHHHhhcCCcccc--cccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeE
Confidence                          222222  11100  001114689999999999999999999999999999999999999999999


Q ss_pred             eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEE
Q 020714          183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL  262 (322)
Q Consensus       183 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~iv  262 (322)
                      ..++..+.++||+|+.....-.. ....-.+.+++..+..+|++++|+|++.+.++++..+..++.+.+.      ++++
T Consensus       222 e~~~~~~~liDTAGiRrk~ki~e-~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~------~~vI  294 (444)
T COG1160         222 ERDGRKYVLIDTAGIRRKGKITE-SVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGR------GIVI  294 (444)
T ss_pred             EECCeEEEEEECCCCCccccccc-ceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCC------CeEE
Confidence            99999999999999975543222 1223356777888899999999999999999999888887777664      4999


Q ss_pred             EEeCCCCCCCh-hHH---HHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714          263 CMNKVDLVTKK-KDL---LKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLK  320 (322)
Q Consensus       263 V~NK~Dl~~~~-~~~---~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~  320 (322)
                      |+||+|+.... ...   ...........++.+++++||++|.|+.++++.+......+..+
T Consensus       295 vvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~r  356 (444)
T COG1160         295 VVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRR  356 (444)
T ss_pred             EEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccc
Confidence            99999998753 222   22333333445667899999999999999999999988776544

>TIGR00436 era GTP-binding protein Era

Probab=99.93  E-value=1.9e-24  Score=193.20  Aligned_cols=167  Identities=27%  Similarity=0.406  Sum_probs=125.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|.||||||||+|+|++.+...+++.+++|+....+....++..+.|+||||+.....    .........+...+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~----~l~~~~~~~~~~~l   77 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH----SLNRLMMKEARSAI   77 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc----hHHHHHHHHHHHHH
Confidence            58999999999999999999999888999999999887777666777899999999975422    22223344556677


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      ..+|++++|+|++...+.. ..+...+..   .   +.|+++|+||+|+... .........+....++.+++++||++|
T Consensus        78 ~~aDvvl~VvD~~~~~~~~-~~i~~~l~~---~---~~p~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~v~~iSA~~g  149 (270)
T TIGR00436        78 GGVDLILFVVDSDQWNGDG-EFVLTKLQN---L---KRPVVLTRNKLDNKFK-DKLLPLIDKYAILEDFKDIVPISALTG  149 (270)
T ss_pred             hhCCEEEEEEECCCCCchH-HHHHHHHHh---c---CCCEEEEEECeeCCCH-HHHHHHHHHHHhhcCCCceEEEecCCC
Confidence            8999999999997654332 223333322   2   4679999999999753 333334444544455557999999999


Q ss_pred             CCHHHHHHHHHHHhhhcCC
Q 020714          301 AGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       301 ~gi~el~~~i~~~l~~~~~  319 (322)
                      .|+++|+++|.+.+....+
T Consensus       150 ~gi~~L~~~l~~~l~~~~~  168 (270)
T TIGR00436       150 DNTSFLAAFIEVHLPEGPF  168 (270)
T ss_pred             CCHHHHHHHHHHhCCCCCC
Confidence            9999999999999877544

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.93  E-value=1e-23  Score=202.33  Aligned_cols=248  Identities=19%  Similarity=0.208  Sum_probs=160.7

Q ss_pred             CCceEEEccccCCC------------------CCC-CCCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhhHHH
Q 020714           45 DCDSVFDSSYFRIP------------------TID-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEE  104 (322)
Q Consensus        45 ~~d~v~~~~da~~p------------------~~~-~~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~  104 (322)
                      .+|+++-+.|++..                  ++. -||+|+...+.  .....+.......++.|+ ++.|..++++..
T Consensus       117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i  194 (472)
T PRK03003        117 TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAALWSLGLGEPHPVSALHGRGVGDLLDAV  194 (472)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHHHHhcCCCCeEEEEcCCCCCcHHHHHHH
Confidence            58988888888754                  333 38999864322  122222222223467887 888888774322


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee
Q 020714          105 EEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK  184 (322)
Q Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~  184 (322)
                                   .+...+..+ .    .......++|+++|.||||||||+|+|++.....++..+|+|++.....+..
T Consensus       195 -------------~~~l~~~~~-~----~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~  256 (472)
T PRK03003        195 -------------LAALPEVPR-V----GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL  256 (472)
T ss_pred             -------------Hhhcccccc-c----ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE
Confidence                         111111000 0    0112346899999999999999999999988777788899998877666667


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      .+..+.||||||+........... .....++...+..+|++++|+|++++.+.++..+...+.   .   .+.|+|+|+
T Consensus       257 ~~~~~~l~DTaG~~~~~~~~~~~e-~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~---~---~~~piIiV~  329 (472)
T PRK03003        257 GGKTWRFVDTAGLRRRVKQASGHE-YYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVI---E---AGRALVLAF  329 (472)
T ss_pred             CCEEEEEEECCCccccccccchHH-HHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHH---H---cCCCEEEEE
Confidence            788899999999864322111011 111123344578899999999998876665544333332   2   256899999


Q ss_pred             eCCCCCCChh--HHH-HHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714          265 NKVDLVTKKK--DLL-KVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLK  320 (322)
Q Consensus       265 NK~Dl~~~~~--~~~-~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~  320 (322)
                      ||+|+.....  ... +....+.. ....+++++||++|.|++++|+.|.+.+..+..+
T Consensus       330 NK~Dl~~~~~~~~~~~~i~~~l~~-~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~  387 (472)
T PRK03003        330 NKWDLVDEDRRYYLEREIDRELAQ-VPWAPRVNISAKTGRAVDKLVPALETALESWDTR  387 (472)
T ss_pred             ECcccCChhHHHHHHHHHHHhccc-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence            9999975321  111 12222322 2334799999999999999999999988766544

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.93  E-value=4.9e-24  Score=195.92  Aligned_cols=166  Identities=27%  Similarity=0.350  Sum_probs=136.4

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ..+.+++++++|.||||||||+|+|++.+.+.++..+|||++.....+..+|.++.++||+|+.+...    ...+.+++
T Consensus       213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d----~VE~iGIe  288 (454)
T COG0486         213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDD----VVERIGIE  288 (454)
T ss_pred             hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCcc----HHHHHHHH
Confidence            35679999999999999999999999999999999999999999999999999999999999986543    44577999


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      +++..+..||++++|+|.+.+....+.....       ....++|+++|+||+|+....... .    + ......+++.
T Consensus       289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~~~-~----~-~~~~~~~~i~  355 (454)
T COG0486         289 RAKKAIEEADLVLFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADLVSKIELE-S----E-KLANGDAIIS  355 (454)
T ss_pred             HHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-------hcccCCCEEEEEechhcccccccc-h----h-hccCCCceEE
Confidence            9999999999999999998765555544333       122357899999999998753311 1    1 1122225899


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|+|++.|.+.|.+.+...
T Consensus       356 iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         356 ISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EEecCccCHHHHHHHHHHHHhhc
Confidence            99999999999999999988654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.92  E-value=2.2e-23  Score=198.51  Aligned_cols=246  Identities=21%  Similarity=0.271  Sum_probs=164.7

Q ss_pred             CCceEEEccccCCCCCC-------------------CCCCCCCCCCChhhHHHHHHhhC-CeEEEeec-cccchhhhhHH
Q 020714           45 DCDSVFDSSYFRIPTID-------------------DPQNNNAAKKQEPTWDEKYRERT-DRIVFGEE-AQKGKLRIFQE  103 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~~-------------------~~k~dl~~~~~~~~w~~~~~~~~-~~i~f~~~-~~~~~~~~~~~  103 (322)
                      .+|+++-+.|++.+...                   -||+|+...+..  ....+ ..+ ..++..++ ++.|...+++.
T Consensus        78 ~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~~~~~-~lg~~~~~~vSa~~g~gv~~ll~~  154 (429)
T TIGR03594        78 EADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAEFY-SLGFGEPIPISAEHGRGIGDLLDA  154 (429)
T ss_pred             hCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--HHHHH-hcCCCCeEEEeCCcCCChHHHHHH
Confidence            58888888888654332                   289998765432  12222 333 35677777 77777666322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe
Q 020714          104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT  183 (322)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~  183 (322)
                      .              ...+.....    ........++|+++|.+|+|||||+|+|++.....++..+++|.+.....+.
T Consensus       155 i--------------~~~l~~~~~----~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~  216 (429)
T TIGR03594       155 I--------------LELLPEEEE----EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFE  216 (429)
T ss_pred             H--------------HHhcCcccc----cccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEE
Confidence            1              111111000    0112235689999999999999999999998877788889999988777676


Q ss_pred             eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ..+..+.+|||||+........ ........+++..+..+|++++|+|++++.+.++..+...+..   .   +.|+++|
T Consensus       217 ~~~~~~~liDT~G~~~~~~~~~-~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~---~---~~~iiiv  289 (429)
T TIGR03594       217 RNGKKYLLIDTAGIRRKGKVTE-GVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILE---A---GKALVIV  289 (429)
T ss_pred             ECCcEEEEEECCCccccccchh-hHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---c---CCcEEEE
Confidence            7788999999999975543211 1112233455667889999999999988776665544443332   2   4679999


Q ss_pred             EeCCCCCCChhHHHHHHHHHhcC---CCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          264 MNKVDLVTKKKDLLKVAEQFKHL---PGYERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       264 ~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      +||+|+.............+...   .+..+++++||++|.|++++++++.+.+..+.
T Consensus       290 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~  347 (429)
T TIGR03594       290 VNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENAN  347 (429)
T ss_pred             EECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            99999983333333333333222   23357999999999999999999999877653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.4e-24  Score=176.51  Aligned_cols=167  Identities=19%  Similarity=0.222  Sum_probs=134.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ...+|++++|..|||||||+-++..+.+... .++.|....+....+......+.+|||+|++.+....+          
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slap----------   72 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAP----------   72 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccc----------
Confidence            3568999999999999999999988876653 45555554444444444457888999999998765333          


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                        .++++|+++|+|||+++..  .......|++++.....++.-+.+|+||+||...+.+..+....+++..+.. ++++
T Consensus        73 --MYyRgA~AAivvYDit~~~--SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll-~~ET  147 (200)
T KOG0092|consen   73 --MYYRGANAAIVVYDITDEE--SFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLL-FFET  147 (200)
T ss_pred             --ceecCCcEEEEEEecccHH--HHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCE-EEEE
Confidence              5789999999999997643  3346788999999887777778899999999987777777788888888874 9999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhcC
Q 020714          296 SGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      |||+|.|++++|..|.+.+....
T Consensus       148 SAKTg~Nv~~if~~Ia~~lp~~~  170 (200)
T KOG0092|consen  148 SAKTGENVNEIFQAIAEKLPCSD  170 (200)
T ss_pred             ecccccCHHHHHHHHHHhccCcc
Confidence            99999999999999999988753

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.2e-24  Score=175.98  Aligned_cols=169  Identities=17%  Similarity=0.171  Sum_probs=135.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....+||+++|.+|||||+|+-++....+.. ...+.|+........+......+++|||+|+++|..            
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrt------------   73 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRT------------   73 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhh------------
Confidence            3457999999999999999999999877653 333444444333333333455789999999987642            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      .+..+++.|++||+|||++...++  ..+..|+.++......++|.++|+||+|+.....+..+....|+...+.+.+++
T Consensus        74 it~syYR~ahGii~vyDiT~~~SF--~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~E  151 (205)
T KOG0084|consen   74 ITSSYYRGAHGIIFVYDITKQESF--NNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLE  151 (205)
T ss_pred             hhHhhccCCCeEEEEEEcccHHHh--hhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceee
Confidence            233578999999999999875555  357889999998888889999999999999888777788889999888877999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhcC
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      +|||++.|+++.|..|...++.+.
T Consensus       152 TSAK~~~NVe~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  152 TSAKDSTNVEDAFLTLAKELKQRK  175 (205)
T ss_pred             cccCCccCHHHHHHHHHHHHHHhc
Confidence            999999999999999999988753

>PRK15494 era GTPase Era; Provisional

Probab=99.92  E-value=1.2e-23  Score=193.30  Aligned_cols=171  Identities=27%  Similarity=0.475  Sum_probs=127.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+.++|+++|.||||||||+|+|++..+..+++.+++|++...+.+...+..+.||||||+..+..    .....+.+.+
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~----~l~~~~~r~~  125 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG----SLEKAMVRCA  125 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc----cHHHHHHHHH
Confidence            346789999999999999999999998888888999998877777777788999999999975432    2223456666


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      +..+..+|++++|+|.+......+..   ++..+...   +.|.++|+||+|+...  ...+....+.......+++++|
T Consensus       126 ~~~l~~aDvil~VvD~~~s~~~~~~~---il~~l~~~---~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~iS  197 (339)
T PRK15494        126 WSSLHSADLVLLIIDSLKSFDDITHN---ILDKLRSL---NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPIS  197 (339)
T ss_pred             HHHhhhCCEEEEEEECCCCCCHHHHH---HHHHHHhc---CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEEe
Confidence            77788999999999986644433323   33333322   3467889999999653  2333334444444445799999


Q ss_pred             cCCCCCHHHHHHHHHHHhhhcCC
Q 020714          297 GLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      |++|.|+++++++|.+.+.+..+
T Consensus       198 Aktg~gv~eL~~~L~~~l~~~~~  220 (339)
T PRK15494        198 ALSGKNIDGLLEYITSKAKISPW  220 (339)
T ss_pred             ccCccCHHHHHHHHHHhCCCCCC
Confidence            99999999999999998877544

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.92  E-value=9.1e-24  Score=193.67  Aligned_cols=161  Identities=25%  Similarity=0.400  Sum_probs=136.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      ..|+++|-||||||||.|+|++.+.+.++..||+|++.........+..+.++||+|+.....   .........+++..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~---~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE---DELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc---hHHHHHHHHHHHHH
Confidence            569999999999999999999999999999999999999998888899999999999985432   13445567788888


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      +..||++|+|+|...+.+..+..+..+|...      .+|+++|+||+|-...+    ....++.. .|+.+++++||..
T Consensus        81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~------~kpviLvvNK~D~~~~e----~~~~efys-lG~g~~~~ISA~H  149 (444)
T COG1160          81 IEEADVILFVVDGREGITPADEEIAKILRRS------KKPVILVVNKIDNLKAE----ELAYEFYS-LGFGEPVPISAEH  149 (444)
T ss_pred             HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc------CCCEEEEEEcccCchhh----hhHHHHHh-cCCCCceEeehhh
Confidence            9999999999999999999998888888842      36799999999976332    22333433 4677899999999


Q ss_pred             CCCHHHHHHHHHHHh
Q 020714          300 GAGLKALTQYLMEQF  314 (322)
Q Consensus       300 g~gi~el~~~i~~~l  314 (322)
                      |.|+.+|++++...+
T Consensus       150 g~Gi~dLld~v~~~l  164 (444)
T COG1160         150 GRGIGDLLDAVLELL  164 (444)
T ss_pred             ccCHHHHHHHHHhhc
Confidence            999999999999997

>PRK00089 era GTPase Era; Reviewed

Probab=99.92  E-value=3.3e-23  Score=187.42  Aligned_cols=171  Identities=32%  Similarity=0.524  Sum_probs=131.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +...|+++|.||||||||+|+|++.+...+++.+++|+....+....++..+.++||||+.....    .........++
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~----~l~~~~~~~~~   79 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR----ALNRAMNKAAW   79 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh----HHHHHHHHHHH
Confidence            34568999999999999999999999988999999999887777666667999999999975432    11222344555


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|+|+++..+..+..+...+.   .   .+.|+++|+||+|+.............+....+..+++++||
T Consensus        80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~---~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA  153 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLK---K---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISA  153 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCChhHHHHHHHHh---h---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecC
Confidence            6778899999999997754444433333333   2   246899999999998554555556666666566678999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhcC
Q 020714          298 LKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++|.|+++++++|.+.+....
T Consensus       154 ~~~~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        154 LKGDNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             CCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999987643

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.91  E-value=8.7e-24  Score=183.13  Aligned_cols=184  Identities=41%  Similarity=0.611  Sum_probs=149.4

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ++..+.+.|+++|.||||||||.|.+.|.+++.++....||+....+++..+...+.|+||||+.........+......
T Consensus        67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            34567889999999999999999999999999999999999999999999999999999999999887766666666666


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH----------------H
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL----------------L  277 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~----------------~  277 (322)
                      ...+..+..||++++++|+++.-..-...+...++.+.     ..|-++|+||+|........                .
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl  221 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL  221 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh-----cCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence            77788899999999999998643444446777777766     46789999999988653211                1


Q ss_pred             HHHHHHhc------------CCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCCcCC
Q 020714          278 KVAEQFKH------------LPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLKIH  322 (322)
Q Consensus       278 ~~~~~~~~------------~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~~h  322 (322)
                      ++.+.+..            +..+..+|++||++|.||+++-++|...+...-++||
T Consensus       222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~  278 (379)
T KOG1423|consen  222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYP  278 (379)
T ss_pred             hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCC
Confidence            22333332            2235569999999999999999999999998888775

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=1.2e-22  Score=193.76  Aligned_cols=244  Identities=22%  Similarity=0.282  Sum_probs=162.8

Q ss_pred             CCceEEEccccCCCCC------------------C-CCCCCCCCCCChhhHHHHHHhhC-CeEEEeec-cccchhhhhHH
Q 020714           45 DCDSVFDSSYFRIPTI------------------D-DPQNNNAAKKQEPTWDEKYRERT-DRIVFGEE-AQKGKLRIFQE  103 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~------------------~-~~k~dl~~~~~~~~w~~~~~~~~-~~i~f~~~-~~~~~~~~~~~  103 (322)
                      .+|+++-+.|++.+..                  . -||+|+...+  ......+ ..+ ..++..++ ++.+..++++.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--~~~~~~~-~lg~~~~~~iSa~~g~gv~~l~~~  156 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--ADAYEFY-SLGLGEPYPISAEHGRGIGDLLDA  156 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--hhHHHHH-hcCCCCCEEEEeeCCCCHHHHHHH
Confidence            5898888888876433                  2 3899965422  2222222 233 23566777 77777666322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe
Q 020714          104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT  183 (322)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~  183 (322)
                      ...              ......     ........++|+++|.+|+|||||+|+|++.....++..+|+|++.....+.
T Consensus       157 I~~--------------~~~~~~-----~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~  217 (435)
T PRK00093        157 ILE--------------ELPEEE-----EEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFE  217 (435)
T ss_pred             HHh--------------hCCccc-----cccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEE
Confidence            211              000000     0011235799999999999999999999998877788899999988777676


Q ss_pred             eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ..+..+.++||||+........ ........+++..+..+|++++|+|++.+.+.++..+...+...      ++|+++|
T Consensus       218 ~~~~~~~lvDT~G~~~~~~~~~-~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~------~~~~ivv  290 (435)
T PRK00093        218 RDGQKYTLIDTAGIRRKGKVTE-GVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEA------GRALVIV  290 (435)
T ss_pred             ECCeeEEEEECCCCCCCcchhh-HHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCcEEEE
Confidence            7788899999999875433211 11112334566678899999999999888777665554444332      4679999


Q ss_pred             EeCCCCCCChhHHHHHHHHHh---cCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          264 MNKVDLVTKKKDLLKVAEQFK---HLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       264 ~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      +||+|+.... ........+.   ...+..+++++||++|.|++++++.+.+.+..+.
T Consensus       291 ~NK~Dl~~~~-~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~  347 (435)
T PRK00093        291 VNKWDLVDEK-TMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENAN  347 (435)
T ss_pred             EECccCCCHH-HHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence            9999997432 2222222222   2223457999999999999999999998876553

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=2.9e-24  Score=174.10  Aligned_cols=156  Identities=24%  Similarity=0.359  Sum_probs=108.5

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      ++|+++|.||||||||+|+|+|.+ ..+++.||+|.....+.+...+..+.++|+||+.......    ..+.+...+-.
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s----~ee~v~~~~l~   75 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS----EEERVARDYLL   75 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS----HHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC----cHHHHHHHHHh
Confidence            479999999999999999999998 6689999999999998888889999999999986543322    12223333333


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      ....|++++|+|+++    .+.. ..++..+...   +.|+++|+||+|+........ ..+.+.+..++ |++++||++
T Consensus        76 ~~~~D~ii~VvDa~~----l~r~-l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~-pvi~~sa~~  145 (156)
T PF02421_consen   76 SEKPDLIIVVVDATN----LERN-LYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGV-PVIPVSART  145 (156)
T ss_dssp             HTSSSEEEEEEEGGG----HHHH-HHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS--EEEEBTTT
T ss_pred             hcCCCEEEEECCCCC----HHHH-HHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCC-CEEEEEeCC
Confidence            577899999999954    2222 2333333333   367999999999876432110 12233333455 699999999


Q ss_pred             CCCHHHHHHHH
Q 020714          300 GAGLKALTQYL  310 (322)
Q Consensus       300 g~gi~el~~~i  310 (322)
                      |+|+++|++.|
T Consensus       146 ~~g~~~L~~~I  156 (156)
T PF02421_consen  146 GEGIDELKDAI  156 (156)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHhhC
Confidence            99999999876

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04142 RRP22 RRP22 subfamily

Probab=99.91  E-value=4.7e-23  Score=175.83  Aligned_cols=173  Identities=14%  Similarity=0.124  Sum_probs=112.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||++++.+..+.... .+.++.......+...+  ..+.+|||||...+....+ .   +......
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~-~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~-~---e~~~~~~   75 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY-IPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAG-Q---EWMDPRF   75 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCccc-CCccccccceeEEEECCEEEEEEEEeCCCcccCCccch-h---HHHHHHH
Confidence            47999999999999999999987664322 23222222212222344  4678999999865432111 1   1122233


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc---CCCCCcEEEEEeCCCCCCChhHHHHHHHHHh-cCCCCCcEE
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK-HLPGYERIF  293 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~---~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~  293 (322)
                      ..+..+|++++|||++++.+..  .+..|.+.+...   ...+.|+++|+||+|+...+....+....+. +.+++ +++
T Consensus        76 ~~~~~ad~iilv~D~~~~~S~~--~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~  152 (198)
T cd04142          76 RGLRNSRAFILVYDICSPDSFH--YVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKC-GYL  152 (198)
T ss_pred             hhhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCC-cEE
Confidence            4568899999999997643332  233444443321   2346899999999999764433333333333 23344 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDLGLK  320 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~~~~  320 (322)
                      +|||++|.|++++|+.+.+.+..++..
T Consensus       153 e~Sak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         153 ECSAKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             EecCCCCCCHHHHHHHHHHHhhccCCC
Confidence            999999999999999999988876544

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01878 HflX HflX subfamily

Probab=99.90  E-value=7.5e-22  Score=169.28  Aligned_cols=165  Identities=21%  Similarity=0.285  Sum_probs=112.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      .+..++|+++|.+|||||||+|++++.... +...+++|.......+...+ ..+.+|||||+.....    ......+.
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~~~~~~  112 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP----HQLVEAFR  112 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCC----HHHHHHHH
Confidence            355689999999999999999999987642 23334445444444343444 3899999999864321    22334455


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                      ..+..+..+|++++|+|++++...... .+..++..+..   .+.|+++|+||+|+.......     ..... ...+++
T Consensus       113 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~---~~~~viiV~NK~Dl~~~~~~~-----~~~~~-~~~~~~  183 (204)
T cd01878         113 STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA---EDIPMILVLNKIDLLDDEELE-----ERLEA-GRPDAV  183 (204)
T ss_pred             HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc---CCCCEEEEEEccccCChHHHH-----HHhhc-CCCceE
Confidence            566667789999999999775444332 33344444432   357899999999997643322     12222 234699


Q ss_pred             EeecCCCCCHHHHHHHHHHHh
Q 020714          294 MTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l  314 (322)
                      ++||++|.|+++++++|.+++
T Consensus       184 ~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         184 FISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             EEEcCCCCCHHHHHHHHHhhC
Confidence            999999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=3.4e-22  Score=190.14  Aligned_cols=160  Identities=23%  Similarity=0.327  Sum_probs=123.0

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ...+++|+++|.||||||||+|+|++.+...++..+++|++.....+...+..+.+|||||+..+..    .....++.+
T Consensus       212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~----~ie~~gi~~  287 (449)
T PRK05291        212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD----EVEKIGIER  287 (449)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc----HHHHHHHHH
Confidence            3456899999999999999999999988777888899999887777777888999999999874321    222335677


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ++..+..+|++++|+|++++.+..+.   ..+..     ..+.|+++|+||+|+.......        . ....+++++
T Consensus       288 ~~~~~~~aD~il~VvD~s~~~s~~~~---~~l~~-----~~~~piiiV~NK~DL~~~~~~~--------~-~~~~~~i~i  350 (449)
T PRK05291        288 SREAIEEADLVLLVLDASEPLTEEDD---EILEE-----LKDKPVIVVLNKADLTGEIDLE--------E-ENGKPVIRI  350 (449)
T ss_pred             HHHHHHhCCEEEEEecCCCCCChhHH---HHHHh-----cCCCCcEEEEEhhhccccchhh--------h-ccCCceEEE
Confidence            78889999999999999876544332   22222     2357899999999997543221        1 122368999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      ||++|.|+++++++|.+.+..
T Consensus       351 SAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        351 SAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             EeeCCCCHHHHHHHHHHHHhh
Confidence            999999999999999998754

>cd01865 Rab3 Rab3 subfamily

Probab=99.90  E-value=1.3e-22  Score=168.07  Aligned_cols=162  Identities=14%  Similarity=0.152  Sum_probs=110.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ++|+++|.+|||||||++++.+..+... .+..+................+.+|||||...+..            ....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~------------~~~~   69 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT------------ITTA   69 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH------------HHHH
Confidence            6899999999999999999998775322 12222111111111111235789999999763211            1124


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .++.+|++++|+|+++..  ....+..|+..+........|+++|+||+|+........+....+....+. +++++||+
T Consensus        70 ~~~~~~~~l~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~  146 (165)
T cd01865          70 YYRGAMGFILMYDITNEE--SFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASAK  146 (165)
T ss_pred             HccCCcEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEECC
Confidence            478899999999997643  233566777777654445688999999999976543323333444444555 59999999


Q ss_pred             CCCCHHHHHHHHHHHhhh
Q 020714          299 KGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~~  316 (322)
                      +|.|+++++++|.+.+.+
T Consensus       147 ~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         147 ENINVKQVFERLVDIICD  164 (165)
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999987654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04163 Era Era subfamily

Probab=99.90  E-value=7.3e-22  Score=162.42  Aligned_cols=166  Identities=35%  Similarity=0.570  Sum_probs=122.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ..+|+++|.+|+|||||+|++.+...+.....+.++...........+..+.+|||||+..+....    ..........
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~----~~~~~~~~~~   78 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL----GERMVKAAWS   78 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH----HHHHHHHHHH
Confidence            578999999999999999999998877777777777766665555556789999999987543211    1111223344


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .+..+|++++|+|+++........+...+...      +.|+++|+||+|+.............+....+..+++++|++
T Consensus        79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  152 (168)
T cd04163          79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISAL  152 (168)
T ss_pred             HHHhCCEEEEEEECCCccCchHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEec
Confidence            57888999999999876444443443434332      357999999999985555566666677666655679999999


Q ss_pred             CCCCHHHHHHHHHHHh
Q 020714          299 KGAGLKALTQYLMEQF  314 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l  314 (322)
                      ++.|+++++++|.+.+
T Consensus       153 ~~~~~~~l~~~l~~~~  168 (168)
T cd04163         153 KGENVDELLEEIVKYL  168 (168)
T ss_pred             cCCChHHHHHHHHhhC
Confidence            9999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04140 ARHI_like ARHI subfamily

Probab=99.90  E-value=1.2e-22  Score=168.22  Aligned_cols=160  Identities=18%  Similarity=0.123  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ++|+++|.+|||||||++++++..+... .+..+.+. ............+.+|||||...+..      .      ...
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~------~------~~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPA------M------QRL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchH------H------HHH
Confidence            6899999999999999999998765322 11111111 11111222345678999999875421      1      112


Q ss_pred             hcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      .+..+|++++|||+++..+.... .+...+..+.....++.|+++|+||+|+.............+...++. ++++|||
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA  147 (165)
T cd04140          69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNC-AFMETSA  147 (165)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCC-cEEEeec
Confidence            35678999999999765443322 333444444433345789999999999976433323333334443444 6999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 020714          298 LKGAGLKALTQYLMEQ  313 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~  313 (322)
                      ++|.|++++|++|.+.
T Consensus       148 ~~g~~v~~~f~~l~~~  163 (165)
T cd04140         148 KTNHNVQELFQELLNL  163 (165)
T ss_pred             CCCCCHHHHHHHHHhc
Confidence            9999999999999864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2.4e-22  Score=183.71  Aligned_cols=173  Identities=25%  Similarity=0.342  Sum_probs=123.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      +....|+++|.||||||||+|+|++.+ +.++..++||.....+.+.. ++..+.+|||||+.+....  ...+   -..
T Consensus       156 k~~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~--~~gL---g~~  229 (335)
T PRK12299        156 KLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE--GAGL---GHR  229 (335)
T ss_pred             cccCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc--cccH---HHH
Confidence            344579999999999999999999865 45778889999988888766 4678999999999753221  0111   234


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC--CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~--~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                      .+..+..++++++|+|+++..+  ...+..|..++....  ..++|+++|+||+|+.............+....+. +++
T Consensus       230 flrhie~a~vlI~ViD~s~~~s--~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~-~i~  306 (335)
T PRK12299        230 FLKHIERTRLLLHLVDIEAVDP--VEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGG-PVF  306 (335)
T ss_pred             HHHHhhhcCEEEEEEcCCCCCC--HHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCC-CEE
Confidence            4556778999999999976432  333445555554321  23578999999999976543333333333333333 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++||++|+|+++++++|.+.+.+..
T Consensus       307 ~iSAktg~GI~eL~~~L~~~l~~~~  331 (335)
T PRK12299        307 LISAVTGEGLDELLRALWELLEEAR  331 (335)
T ss_pred             EEEcCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999887643

>cd04122 Rab14 Rab14 subfamily

Probab=99.90  E-value=1.5e-22  Score=167.84  Aligned_cols=160  Identities=18%  Similarity=0.188  Sum_probs=109.9

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      +||+++|.+|||||||++++.++.+..... ..+.....  ......  ...+.+|||||...+..            ..
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~------------~~   68 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT--RIIEVNGQKIKLQIWDTAGQERFRA------------VT   68 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEE--EEEEECCEEEEEEEEECCCcHHHHH------------HH
Confidence            789999999999999999999876532211 11111111  112223  34678999999753211            11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ...++.+|++++|||++++.+.  ..+..|+..+.....++.|+++|+||+|+........+....++...+. +++++|
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S  145 (166)
T cd04122          69 RSYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL-LFLECS  145 (166)
T ss_pred             HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-EEEEEE
Confidence            2346789999999999765333  3455677666544445688999999999976544333444555554555 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|.|++++|.++.+.+.+
T Consensus       146 a~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         146 AKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04120 Rab12 Rab12 subfamily

Probab=99.90  E-value=1.7e-22  Score=172.67  Aligned_cols=160  Identities=18%  Similarity=0.233  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .|+++|.+|||||||++++....+..... +..+.+.....+..++  ..+.+|||+|...+..          +  ...
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~-~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~----------l--~~~   68 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACK-SGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS----------I--TSA   68 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCC-CcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH----------H--HHH
Confidence            58999999999999999998776543211 1111122222233333  6778999999864321          1  123


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCC-CCCcEEEeec
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP-GYERIFMTSG  297 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~iSa  297 (322)
                      .++.+|++|+|||+++..+..  .+..|+..+......+.|+++|+||+|+...+.........+++.. +. .+++|||
T Consensus        69 y~~~ad~iIlVfDvtd~~Sf~--~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~-~~~etSA  145 (202)
T cd04120          69 YYRSAKGIILVYDITKKETFD--DLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGM-RFCEASA  145 (202)
T ss_pred             HhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCC-EEEEecC
Confidence            578899999999998755443  3455666665444456899999999999765544444455555443 43 5999999


Q ss_pred             CCCCCHHHHHHHHHHHhhh
Q 020714          298 LKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~  316 (322)
                      ++|.||+++|++|.+.+..
T Consensus       146 ktg~gV~e~F~~l~~~~~~  164 (202)
T cd04120         146 KDNFNVDEIFLKLVDDILK  164 (202)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988765

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.90  E-value=5e-22  Score=164.68  Aligned_cols=166  Identities=23%  Similarity=0.297  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|.+|||||||+|+|++.... +...+++|...........+..+.+|||||+..... .............+  .
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~~~--~   77 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL-EERNTIEMQAITAL--A   77 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccc-cCCchHHHHHHHHH--H
Confidence            6899999999999999999987653 344456666655544445567899999999853211 11011110011111  1


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      ..+|++++|+|+++..+........++..+... ..+.|+++|+||+|+........  ...+..... .++++|||++|
T Consensus        78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~-~~~~~~Sa~~~  153 (168)
T cd01897          78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEG-EEVLKISTLTE  153 (168)
T ss_pred             hccCcEEEEEeCCcccccchHHHHHHHHHHHhh-cCcCCeEEEEEccccCchhhHHH--HHHhhhhcc-CceEEEEeccc
Confidence            235899999999765443223333455555432 13578999999999976533222  233333333 36999999999


Q ss_pred             CCHHHHHHHHHHHh
Q 020714          301 AGLKALTQYLMEQF  314 (322)
Q Consensus       301 ~gi~el~~~i~~~l  314 (322)
                      .|+++++++|.+.+
T Consensus       154 ~gi~~l~~~l~~~~  167 (168)
T cd01897         154 EGVDEVKNKACELL  167 (168)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.89  E-value=2e-22  Score=167.30  Aligned_cols=163  Identities=15%  Similarity=0.144  Sum_probs=110.6

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .++|+++|++|||||||++++.+..+... .+..+................+.+|||||...+..            ...
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------------~~~   70 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT------------ITT   70 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH------------HHH
Confidence            58999999999999999999998765332 22222222211111112234678999999754311            112


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|||++++.+.  ..+..|+..+......+.|+++|+||+|+........+....+....+. +++++||
T Consensus        71 ~~~~~ad~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  147 (167)
T cd01867          71 AYYRGAMGIILVYDITDEKSF--ENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETSA  147 (167)
T ss_pred             HHhCCCCEEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence            346789999999999764332  3455666666544445688999999999986443333334444444555 6999999


Q ss_pred             CCCCCHHHHHHHHHHHhhh
Q 020714          298 LKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~  316 (322)
                      ++|.|++++|++|.+.+..
T Consensus       148 ~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         148 KANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.89  E-value=1.2e-21  Score=196.34  Aligned_cols=249  Identities=17%  Similarity=0.161  Sum_probs=159.5

Q ss_pred             CCceEEEccccCCCCC------------------C-CCCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhhHHH
Q 020714           45 DCDSVFDSSYFRIPTI------------------D-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEE  104 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~------------------~-~~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~  104 (322)
                      .+|+++-+.|++..+.                  . .||+|+......  -...+......+++.++ ++.|..++++..
T Consensus       354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~--~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i  431 (712)
T PRK09518        354 LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD--AAEFWKLGLGEPYPISAMHGRGVGDLLDEA  431 (712)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh--HHHHHHcCCCCeEEEECCCCCCchHHHHHH
Confidence            5888888888765332                  2 289997643221  12222222234567788 888888774322


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee
Q 020714          105 EEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK  184 (322)
Q Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~  184 (322)
                                   .+....... .  ...-.....++|+++|.||||||||+|+|++.....++..+|+|++.....+..
T Consensus       432 -------------~~~l~~~~~-~--~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~  495 (712)
T PRK09518        432 -------------LDSLKVAEK-T--SGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI  495 (712)
T ss_pred             -------------HHhcccccc-c--ccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE
Confidence                         111111000 0  000011245799999999999999999999988777788899999887776767


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      .+..+.+|||||+........... .....++...+..+|++++|+|++.+.+.++..+...+..   .   ++|+++|+
T Consensus       496 ~~~~~~liDTaG~~~~~~~~~~~e-~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~---~---~~piIiV~  568 (712)
T PRK09518        496 DGEDWLFIDTAGIKRRQHKLTGAE-YYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVD---A---GRALVLVF  568 (712)
T ss_pred             CCCEEEEEECCCcccCcccchhHH-HHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCCEEEEE
Confidence            888899999999864322111011 1112234456788999999999988766655444333322   2   46899999


Q ss_pred             eCCCCCCChhHHHHHHHHHh---cCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          265 NKVDLVTKKKDLLKVAEQFK---HLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       265 NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      ||+|+..... .......+.   ......+++++||++|.|++++++.+.+.+..+..
T Consensus       569 NK~DL~~~~~-~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~  625 (712)
T PRK09518        569 NKWDLMDEFR-RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQ  625 (712)
T ss_pred             EchhcCChhH-HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            9999976322 111122221   12234578999999999999999999999876543

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=5.1e-22  Score=162.29  Aligned_cols=157  Identities=25%  Similarity=0.396  Sum_probs=114.4

Q ss_pred             EEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhccc
Q 020714          143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL  222 (322)
Q Consensus       143 ~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (322)
                      +++|.+|||||||+|+|.+......+..+++|...........+..+.+|||||+.....    .............+..
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~----~~~~~~~~~~~~~~~~   76 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE----GISKEIREQAELAIEE   76 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh----HHHHHHHHHHHHHHHh
Confidence            478999999999999999987666677788887766666666778899999999975432    1112222333445678


Q ss_pred             ccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCC
Q 020714          223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAG  302 (322)
Q Consensus       223 ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~g  302 (322)
                      +|++++|+|+.++.+..+..+..++...      +.|+++|+||+|+......    ...+.. .+..+++++|+++|.|
T Consensus        77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~------~~piiiv~nK~D~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~g  145 (157)
T cd01894          77 ADVILFVVDGREGLTPADEEIAKYLRKS------KKPVILVVNKVDNIKEEDE----AAEFYS-LGFGEPIPISAEHGRG  145 (157)
T ss_pred             CCEEEEEEeccccCCccHHHHHHHHHhc------CCCEEEEEECcccCChHHH----HHHHHh-cCCCCeEEEecccCCC
Confidence            8999999999776555554444555432      3679999999999875433    222222 3444689999999999


Q ss_pred             HHHHHHHHHHHh
Q 020714          303 LKALTQYLMEQF  314 (322)
Q Consensus       303 i~el~~~i~~~l  314 (322)
                      +++++++|.+.+
T Consensus       146 v~~l~~~l~~~~  157 (157)
T cd01894         146 IGDLLDAILELL  157 (157)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.3e-22  Score=164.94  Aligned_cols=165  Identities=18%  Similarity=0.191  Sum_probs=128.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      +.+|++|+|..+|||||||+++....+.. ...+.|...-.....+.....++++|||+|++.|....|           
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslip-----------   89 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-----------   89 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhh-----------
Confidence            45899999999999999999998665432 233344433333333444467889999999998755332           


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCC-CcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK-QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~-~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                       .+++++.++|+|||+++..+.+  ....|++.+...+..+ +-+++|+||.||.+.++...++.+..++..+. .++++
T Consensus        90 -sY~Rds~vaviVyDit~~~Sfe--~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a-~f~et  165 (221)
T KOG0094|consen   90 -SYIRDSSVAVIVYDITDRNSFE--NTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA-EFIET  165 (221)
T ss_pred             -hhccCCeEEEEEEeccccchHH--HHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc-EEEEe
Confidence             4578999999999998866554  4668888888776664 67889999999999888877778877777777 59999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||+.|.||.++|..|..++...
T Consensus       166 sak~g~NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  166 SAKAGENVKQLFRRIAAALPGM  187 (221)
T ss_pred             cccCCCCHHHHHHHHHHhccCc
Confidence            9999999999999999888764

>cd04121 Rab40 Rab40 subfamily

Probab=99.89  E-value=1.8e-22  Score=170.81  Aligned_cols=162  Identities=14%  Similarity=0.169  Sum_probs=114.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ..+||+++|.+|||||||+.++....+... ....+.  ......+..++  ..+.+|||+|...+..          + 
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~--~~~~~~i~~~~~~~~l~iwDt~G~~~~~~----------l-   71 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGI--DYKTTTILLDGRRVKLQLWDTSGQGRFCT----------I-   71 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccee--EEEEEEEEECCEEEEEEEEeCCCcHHHHH----------H-
Confidence            458999999999999999999987654321 112222  21112222333  5778999999864321          1 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                       ....+..+|++|+|||+++..+..  .+..|+..+... .++.|+++|+||+|+.............+++..+. ++++
T Consensus        72 -~~~~~~~ad~illVfD~t~~~Sf~--~~~~w~~~i~~~-~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~-~~~e  146 (189)
T cd04121          72 -FRSYSRGAQGIILVYDITNRWSFD--GIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM-TFFE  146 (189)
T ss_pred             -HHHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHh-CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCC-EEEE
Confidence             113457899999999998755443  355677777543 35789999999999976544445556666666665 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      |||++|.||+++|++|.+.+...
T Consensus       147 ~SAk~g~~V~~~F~~l~~~i~~~  169 (189)
T cd04121         147 VSPLCNFNITESFTELARIVLMR  169 (189)
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999877653

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.89  E-value=8.9e-22  Score=160.75  Aligned_cols=156  Identities=26%  Similarity=0.386  Sum_probs=116.1

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +++|+++|.+|+|||||+|++.+.........+++|...........+..+.+|||||+......    .........+.
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~----~~~~~~~~~~~   76 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE----IEKIGIERARE   76 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch----HHHHHHHHHHH
Confidence            46899999999999999999999887777778888877666556566778999999998754321    12223445566


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .+..+|++++|+|++.+.+..+.....   .     ..+.|+++|+||+|+......       ... ....+++++||+
T Consensus        77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~---~-----~~~~~vi~v~nK~D~~~~~~~-------~~~-~~~~~~~~~Sa~  140 (157)
T cd04164          77 AIEEADLVLFVIDASRGLDEEDLEILE---L-----PADKPIIVVLNKSDLLPDSEL-------LSL-LAGKPIIAISAK  140 (157)
T ss_pred             HHhhCCEEEEEEECCCCCCHHHHHHHH---h-----hcCCCEEEEEEchhcCCcccc-------ccc-cCCCceEEEECC
Confidence            678899999999998655444332222   1     235789999999999865432       112 223479999999


Q ss_pred             CCCCHHHHHHHHHHHh
Q 020714          299 KGAGLKALTQYLMEQF  314 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l  314 (322)
                      +|.|+++++++|.+.+
T Consensus       141 ~~~~v~~l~~~l~~~~  156 (157)
T cd04164         141 TGEGLDELKEALLELA  156 (157)
T ss_pred             CCCCHHHHHHHHHHhh
Confidence            9999999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01864 Rab19 Rab19 subfamily

Probab=99.89  E-value=3.7e-22  Score=165.20  Aligned_cols=161  Identities=17%  Similarity=0.202  Sum_probs=109.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .++|+++|.+|+|||||++++....+....... .+.+.....+...+  ..+.+|||||...+.            ...
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------------~~~   69 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNT-IGVDFTMKTLEIEGKRVKLQIWDTAGQERFR------------TIT   69 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCc-cceEEEEEEEEECCEEEEEEEEECCChHHHH------------HHH
Confidence            478999999999999999999876654322211 11111112233333  478999999975321            112


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ...+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+.............+....+...++++|
T Consensus        70 ~~~~~~~d~~llv~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S  147 (165)
T cd01864          70 QSYYRSANGAIIAYDITRRSSF--ESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS  147 (165)
T ss_pred             HHHhccCCEEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE
Confidence            2346788999999999764333  23456666665444456889999999999765443333344455555555689999


Q ss_pred             cCCCCCHHHHHHHHHHHh
Q 020714          297 GLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l  314 (322)
                      |++|.|+++++++|.+.+
T Consensus       148 a~~~~~v~~~~~~l~~~l  165 (165)
T cd01864         148 AKESQNVEEAFLLMATEL  165 (165)
T ss_pred             CCCCCCHHHHHHHHHHhC
Confidence            999999999999998753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04136 Rap_like Rap-like subfamily

Probab=99.89  E-value=2e-22  Score=166.15  Aligned_cols=158  Identities=16%  Similarity=0.125  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||++++....+...  ...++.......+..++  ..+.+|||||...+..          ..  .
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~   67 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEK--YDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA----------MR--D   67 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCchhhhEEEEEEECCEEEEEEEEECCCccccch----------HH--H
Confidence            6899999999999999999987664322  12222222222233333  4567899999875422          11  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ..+..+|++++|||+++..+.  ..+..|+..+... ..++.|+++|+||+|+........+....+...++ .+++++|
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S  144 (163)
T cd04136          68 LYIKNGQGFVLVYSITSQSSF--NDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETS  144 (163)
T ss_pred             HHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEec
Confidence            235778999999999764433  2344444444322 23468899999999997644333333444444445 4699999


Q ss_pred             cCCCCCHHHHHHHHHHHh
Q 020714          297 GLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l  314 (322)
                      |++|.|+++++++|.+.+
T Consensus       145 a~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         145 AKSKINVDEVFADLVRQI  162 (163)
T ss_pred             CCCCCCHHHHHHHHHHhc
Confidence            999999999999998764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01898 Obg Obg subfamily

Probab=99.89  E-value=4.8e-22  Score=165.07  Aligned_cols=166  Identities=24%  Similarity=0.319  Sum_probs=110.5

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc-cEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      .|+++|.+|||||||+|+|.+... .++..+++|.....+.+...+. .+.+|||||+.......  ..   ....++..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~---~~~~~~~~   75 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG--KG---LGHRFLRH   75 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc--CC---chHHHHHH
Confidence            489999999999999999997654 4556667776666555555555 89999999985321110  11   12233344


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc--CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ--APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~--~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      +..+|++++|+|+++.. .....+..+.+.+...  .....|+++|+||+|+.+....... ...+.......+++++||
T Consensus        76 ~~~~d~vi~v~D~~~~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~Sa  153 (170)
T cd01898          76 IERTRLLLHVIDLSGDD-DPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFEL-LKELLKELWGKPVFPISA  153 (170)
T ss_pred             HHhCCEEEEEEecCCCC-CHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHH-HHHHHhhCCCCCEEEEec
Confidence            56789999999997641 1222333444444322  1235789999999999765443332 333333222346999999


Q ss_pred             CCCCCHHHHHHHHHHHh
Q 020714          298 LKGAGLKALTQYLMEQF  314 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l  314 (322)
                      ++|.|+++++++|.+.+
T Consensus       154 ~~~~gi~~l~~~i~~~~  170 (170)
T cd01898         154 LTGEGLDELLRKLAELL  170 (170)
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            99999999999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.89  E-value=4.9e-22  Score=164.59  Aligned_cols=162  Identities=17%  Similarity=0.194  Sum_probs=110.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .++|+++|.+|||||||++++.+..+... ..+..+.+.....+...  ...+.+|||||...+..            ..
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------~~   68 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTES-YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT------------IT   68 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH------------HH
Confidence            47899999999999999999998765432 12222222221222233  34678999999753211            11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ...+..+|++++|||+++..+  ...+..|+..+.....++.|+++|+||+|+........+....+....+. +++++|
T Consensus        69 ~~~~~~~~~ii~v~d~~~~~s--~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  145 (166)
T cd01869          69 SSYYRGAHGIIIVYDVTDQES--FNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI-PFLETS  145 (166)
T ss_pred             HHHhCcCCEEEEEEECcCHHH--HHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEE
Confidence            234678899999999976432  23455677666544445688999999999876543333334455555555 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|.|+++++++|.+.+..
T Consensus       146 a~~~~~v~~~~~~i~~~~~~  165 (166)
T cd01869         146 AKNATNVEQAFMTMAREIKK  165 (166)
T ss_pred             CCCCcCHHHHHHHHHHHHHh
Confidence            99999999999999988753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04144 Ras2 Ras2 subfamily

Probab=99.89  E-value=2.3e-22  Score=170.64  Aligned_cols=160  Identities=13%  Similarity=0.140  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +|+++|.+|||||||++++....+...  ...++...........+  ..+.+|||||...+..          +.  ..
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~~   66 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVET--YDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA----------LR--DQ   66 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcc--CCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH----------HH--HH
Confidence            489999999999999999987665322  12222221111222333  3578999999764321          11  13


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc---ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG---KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~---~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      .+..+|++++|||+++..+..  .+..|+..+.   ....++.|+++|+||+|+.............+....+. +++++
T Consensus        67 ~~~~ad~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~  143 (190)
T cd04144          67 WIREGEGFILVYSITSRSTFE--RVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC-EFIEA  143 (190)
T ss_pred             HHHhCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEe
Confidence            467789999999997644332  3344444443   22235689999999999975433333334445554555 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||++|.|++++|++|.+.+..+
T Consensus       144 SAk~~~~v~~l~~~l~~~l~~~  165 (190)
T cd04144         144 SAKTNVNVERAFYTLVRALRQQ  165 (190)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999987754

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.89  E-value=1.9e-22  Score=168.37  Aligned_cols=162  Identities=14%  Similarity=0.124  Sum_probs=108.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .++|+++|.+|||||||++++....+....  ..+........+..++  ..+.+|||||...+..      +      .
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------l------~   67 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYH--DPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA------M------R   67 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCc--CCcccceEEEEEEECCEEEEEEEEeCCCchhhHH------H------h
Confidence            478999999999999999999877654221  1111111111122333  4678999999864321      1      1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ...+..+|++++|||+++..+...  +..|...+... ..++.|+++|+||+|+.............+++..+. ++++|
T Consensus        68 ~~~~~~~d~~ilv~d~~~~~Sf~~--~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~  144 (172)
T cd04141          68 DQYMRCGEGFIICYSVTDRHSFQE--ASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC-PFFET  144 (172)
T ss_pred             HHHhhcCCEEEEEEECCchhHHHH--HHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCC-EEEEE
Confidence            134678899999999987655443  23333333221 224689999999999976544333344555554555 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||++|.||+++|++|.+.+.+.
T Consensus       145 Sa~~~~~v~~~f~~l~~~~~~~  166 (172)
T cd04141         145 SAALRHYIDDAFHGLVREIRRK  166 (172)
T ss_pred             ecCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999887754

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01866 Rab2 Rab2 subfamily

Probab=99.89  E-value=5.8e-22  Score=164.68  Aligned_cols=163  Identities=17%  Similarity=0.177  Sum_probs=111.1

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .++|+++|.+|||||||++++.+........ ..+.+..............+.+|||||...+.            ....
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------~~~~   71 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR------------SITR   71 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH------------HHHH
Confidence            4799999999999999999999876543322 22332222221122223478899999965321            1122


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|+|+++..+  ...+..|+..+.....++.|+++|+||+|+.............+....+. +++++||
T Consensus        72 ~~~~~~d~il~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa  148 (168)
T cd01866          72 SYYRGAAGALLVYDITRRET--FNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGL-IFMETSA  148 (168)
T ss_pred             HHhccCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence            45678899999999975332  23566777777654456789999999999975433222333444444455 5999999


Q ss_pred             CCCCCHHHHHHHHHHHhhh
Q 020714          298 LKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~  316 (322)
                      ++|.|++++|.++.+.+.+
T Consensus       149 ~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         149 KTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04112 Rab26 Rab26 subfamily

Probab=99.89  E-value=8.4e-22  Score=167.30  Aligned_cols=164  Identities=15%  Similarity=0.141  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +||+++|.+|||||||++++.+..+......+.+..+.....+...  ...+.||||||...+..            ...
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~   68 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS------------VTH   68 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH------------hhH
Confidence            4799999999999999999988765322222222222221122233  35678999999753211            112


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+...+.........+...++. +++++||
T Consensus        69 ~~~~~ad~~i~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~Sa  145 (191)
T cd04112          69 AYYRDAHALLLLYDITNKASF--DNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV-PFMETSA  145 (191)
T ss_pred             HHccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCC-eEEEEeC
Confidence            346788999999999764322  2344555555443334678999999999975433333334445554555 6999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhcC
Q 020714          298 LKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++|.|++++|++|.+.+.+..
T Consensus       146 ~~~~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112         146 KTGLNVELAFTAVAKELKHRK  166 (191)
T ss_pred             CCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999988753

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04133 Rop_like Rop subfamily

Probab=99.88  E-value=4.3e-22  Score=166.63  Aligned_cols=158  Identities=15%  Similarity=0.137  Sum_probs=111.9

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      +|++++|.+|||||||+.++..+.+.. ..++.+...   ...+..+  ...+.+|||+|...+....            
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~---~~~~~~~~~~v~l~i~Dt~G~~~~~~~~------------   66 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVSVDGNTVNLGLWDTAGQEDYNRLR------------   66 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee---EEEEEECCEEEEEEEEECCCCccccccc------------
Confidence            579999999999999999999876642 222222211   1112223  3567899999987654311            


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCCh----------hHHHHHHHHHhc
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK----------KDLLKVAEQFKH  285 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~----------~~~~~~~~~~~~  285 (322)
                      ...++.+|++|+|||++++.+...  + ..|+..+.... ++.|+++|+||+|+.+..          .+..+....+++
T Consensus        67 ~~~~~~a~~~ilvyd~~~~~Sf~~--~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~  143 (176)
T cd04133          67 PLSYRGADVFVLAFSLISRASYEN--VLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK  143 (176)
T ss_pred             hhhcCCCcEEEEEEEcCCHHHHHH--HHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH
Confidence            125688999999999987655433  3 35666665332 468999999999996532          234555667777


Q ss_pred             CCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          286 LPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       286 ~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      ..+..++++|||++|.||+++|+.+.+.+.
T Consensus       144 ~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         144 QIGAAAYIECSSKTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             HcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence            666656999999999999999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04109 Rab28 Rab28 subfamily

Probab=99.88  E-value=7e-22  Score=170.92  Aligned_cols=163  Identities=15%  Similarity=0.181  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      +||+++|.+|||||||+++|.+..+.... .+..+.+.....+...   ...+.||||||...+..      .   ..  
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~-~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~------l---~~--   68 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSY-KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK------M---LD--   68 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHH------H---HH--
Confidence            47999999999999999999987653211 1222222222222222   35788999999753311      1   11  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc---CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~---~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                       ..+..+|++++|||+++..+..  .+..|+..+...   ...+.|+++|+||+|+...+.........+...++. +++
T Consensus        69 -~~~~~ad~iilV~D~t~~~s~~--~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~  144 (215)
T cd04109          69 -KYIYGAHAVFLVYDVTNSQSFE--NLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM-ESC  144 (215)
T ss_pred             -HHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCC-EEE
Confidence             2367899999999997654432  333444444322   123467999999999976544444445556655665 589


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++||++|+|++++|++|.+.+....
T Consensus       145 ~iSAktg~gv~~lf~~l~~~l~~~~  169 (215)
T cd04109         145 LVSAKTGDRVNLLFQQLAAELLGVD  169 (215)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999887643

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.3e-22  Score=165.56  Aligned_cols=166  Identities=14%  Similarity=0.146  Sum_probs=127.7

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....++|+++|.+|||||+++-++....+.... ...|.........+......+++|||.|+..+..            
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~t------------   76 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRT------------   76 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHH------------
Confidence            446799999999999999999999877654221 1222222222222333345779999999986521            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      .+-.+++.|+++++|||+++..+..+  +..|++.+.....+++|.++|+||+|+...+.+..+..+.++..+|. .+++
T Consensus        77 i~~sYyrgA~gi~LvyDitne~Sfen--i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~-~F~E  153 (207)
T KOG0078|consen   77 ITTAYYRGAMGILLVYDITNEKSFEN--IRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI-KFFE  153 (207)
T ss_pred             HHHHHHhhcCeeEEEEEccchHHHHH--HHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCC-eEEE
Confidence            12245788899999999987655544  55688888877777899999999999999888888888999988888 5999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +||++|.||++.|-.|.+.+..
T Consensus       154 tSAk~~~NI~eaF~~La~~i~~  175 (207)
T KOG0078|consen  154 TSAKTNFNIEEAFLSLARDILQ  175 (207)
T ss_pred             ccccCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999998875

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.88  E-value=6.7e-22  Score=163.30  Aligned_cols=160  Identities=14%  Similarity=0.135  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||+|++.+..+....  ..++.+.........  ...+.+|||||...+..      ..      .
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------~~------~   66 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDY--DPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA------MR------D   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccc--CCchhhhEEEEEEECCEEEEEEEEECCCcccchH------HH------H
Confidence            47999999999999999999987654322  122222222222233  34678999999875421      11      1


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ..+..+|++++|+|+++..+..  .+..|...+.. ....+.|+++|+||+|+.............+....+. +++++|
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  143 (164)
T smart00173       67 QYMRTGEGFLLVYSITDRQSFE--EIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGC-PFLETS  143 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCC-EEEEee
Confidence            2356789999999997643332  23333333221 1223578999999999976433333333444444443 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|.|+++++++|.+.+..
T Consensus       144 a~~~~~i~~l~~~l~~~~~~  163 (164)
T smart00173      144 AKERVNVDEAFYDLVREIRK  163 (164)
T ss_pred             cCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999987653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.7e-22  Score=161.89  Aligned_cols=164  Identities=17%  Similarity=0.166  Sum_probs=129.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ..+|++++|..|||||+|+.+++.+.+..+.. +.|.........+.....++.+|||.|++.+..          +.  
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs----------v~--   72 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS----------VT--   72 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH----------HH--
Confidence            45899999999999999999999887654433 233333333333334456789999999975421          11  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      -..++.+.++|+|||++.+.++  ..+..||..+.....++..+++++||+||...+.+..++.+.|++.+++. ++++|
T Consensus        73 ~syYr~a~GalLVydit~r~sF--~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmETS  149 (216)
T KOG0098|consen   73 RSYYRGAAGALLVYDITRRESF--NHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FMETS  149 (216)
T ss_pred             HHHhccCcceEEEEEccchhhH--HHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eehhh
Confidence            2457899999999999775544  45778888888777778889999999999998888899999999999995 88999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++++|++|.|..+...+.+
T Consensus       150 akt~~~VEEaF~nta~~Iy~  169 (216)
T KOG0098|consen  150 AKTAENVEEAFINTAKEIYR  169 (216)
T ss_pred             hhhhhhHHHHHHHHHHHHHH
Confidence            99999999999998888765

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.88  E-value=7.4e-22  Score=168.98  Aligned_cols=163  Identities=21%  Similarity=0.195  Sum_probs=108.5

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ++|+++|.+|||||||++++.+..+.... .+....+.....+...   ...+.+|||||...+..          .  .
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~-~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~----------~--~   67 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHY-KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG----------M--T   67 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh----------h--H
Confidence            47999999999999999999987543221 1211112112222222   34678999999864321          1  1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc----ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG----KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~----~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                      ...+..+|++++|||+++..+..  .+..|...+.    .....+.|+++|+||+|+........+....+....+..++
T Consensus        68 ~~~~~~a~~~ilv~D~t~~~s~~--~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (201)
T cd04107          68 RVYYRGAVGAIIVFDVTRPSTFE--AVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGW  145 (201)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceE
Confidence            23467899999999997654433  2334444332    12234689999999999974333333445555555665579


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +++||++|.|++++|++|.+.+.+.
T Consensus       146 ~e~Sak~~~~v~e~f~~l~~~l~~~  170 (201)
T cd04107         146 FETSAKEGINIEEAMRFLVKNILAN  170 (201)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999988664

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1.4e-21  Score=187.56  Aligned_cols=165  Identities=24%  Similarity=0.295  Sum_probs=123.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...++|+++|.||||||||+|+|++.....+...+|+|++.........+..+.+|||||+.....    .........+
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~----~~~~~~~~~~  111 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK----GLQASVAEQA  111 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch----hHHHHHHHHH
Confidence            445789999999999999999999988777888999998877776667788899999999863221    1111222334


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ...+..||++|+|+|++++.+..+..+..++..      .++|+++|+||+|+.......   ...+.  .++..+++||
T Consensus       112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~------~~~piilV~NK~Dl~~~~~~~---~~~~~--~g~~~~~~iS  180 (472)
T PRK03003        112 EVAMRTADAVLFVVDATVGATATDEAVARVLRR------SGKPVILAANKVDDERGEADA---AALWS--LGLGEPHPVS  180 (472)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECccCCccchhh---HHHHh--cCCCCeEEEE
Confidence            456788999999999988766665556555553      257899999999986532221   11222  2344568999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|.|+++++++|.+.+.+
T Consensus       181 A~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        181 ALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             cCCCCCcHHHHHHHHhhccc
Confidence            99999999999999988755

>cd01868 Rab11_like Rab11-like

Probab=99.88  E-value=7.4e-22  Score=163.27  Aligned_cols=160  Identities=19%  Similarity=0.215  Sum_probs=107.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .++|+++|.+|||||||++++.+..+.... .+..+.+.....+...+  ..+.+|||||...+..            ..
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------------~~   69 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA------------IT   69 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH------------HH
Confidence            478999999999999999999987654322 22222222222233333  4678999999753211            11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ...+..++++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+...+....+....+....+. +++++|
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  146 (165)
T cd01868          70 SAYYRGAVGALLVYDITKKQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGL-SFIETS  146 (165)
T ss_pred             HHHHCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCC-EEEEEE
Confidence            1345788999999999754332  3455677666544434588999999999976543333333444443444 599999


Q ss_pred             cCCCCCHHHHHHHHHHHh
Q 020714          297 GLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l  314 (322)
                      |++|.|+++++++|...+
T Consensus       147 a~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         147 ALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04175 Rap1 Rap1 subgroup

Probab=99.88  E-value=4.8e-22  Score=164.28  Aligned_cols=159  Identities=15%  Similarity=0.138  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||++++..+.+..  ...+++.......+...  ...+.+|||||...+..      .    ..  
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~----~~--   67 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA------M----RD--   67 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcchheEEEEEEECCEEEEEEEEECCCcccchh------H----HH--
Confidence            689999999999999999998665432  12223322222223333  34567999999865422      1    11  


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ..+..+|++++|||+++..+..  .+..|+..+.. ....+.|+++|+||+|+.............+....+. +++++|
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  144 (164)
T cd04175          68 LYMKNGQGFVLVYSITAQSTFN--DLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC-AFLETS  144 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCC-EEEEee
Confidence            2457789999999996543332  23344444432 2335689999999999976543332333444444444 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhh
Q 020714          297 GLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~  315 (322)
                      |++|.|+++++.+|.+.+.
T Consensus       145 a~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         145 AKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             CCCCCCHHHHHHHHHHHhh
Confidence            9999999999999998764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.88  E-value=8.6e-22  Score=162.80  Aligned_cols=160  Identities=18%  Similarity=0.231  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeee--EEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE--VLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||+|++.+..+... ..+..+.+.  ...........+.+|||||...+.      .      ..-
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~------~~~   67 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSK-YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL------E------VRN   67 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCccceeEEEEEEEECCeEEEEEEEECCccHHHH------H------HHH
Confidence            4799999999999999999998765431 112222111  111122234577899999975321      1      111


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC-----CCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-----PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~-----~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                      ..+..+|++|+|+|++++.+.  ..+..|+..+.....     ...|+++|+||+|+.............+....+. ++
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~  144 (168)
T cd04119          68 EFYKDTQGVLLVYDVTDRQSF--EALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF-KY  144 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHH--HhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCC-eE
Confidence            245788999999999764332  234456665543322     4588999999999974332222333334444444 69


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhh
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +++||++|.|+++++++|.+.+.
T Consensus       145 ~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         145 FETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999998765

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04125 RabA_like RabA-like subfamily

Probab=99.88  E-value=1e-21  Score=166.29  Aligned_cols=163  Identities=20%  Similarity=0.164  Sum_probs=110.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ++|+++|.+|||||||++++.+..+.. ..+..+.+..............+.+|||||...+..            ....
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------------~~~~   68 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS------------LNNS   68 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh------------hHHH
Confidence            479999999999999999999877643 222222222211111111234678999999753211            1123


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .+..+|++++|||++++.+  ...+..|+..+........|+++|+||+|+.............+....+. +++++||+
T Consensus        69 ~~~~~d~iilv~d~~~~~s--~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~  145 (188)
T cd04125          69 YYRGAHGYLLVYDVTDQES--FENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAK  145 (188)
T ss_pred             HccCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCC
Confidence            4678999999999976433  23455566666544444578999999999975443323333444444555 69999999


Q ss_pred             CCCCHHHHHHHHHHHhhhc
Q 020714          299 KGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~~~  317 (322)
                      +|.|++++|++|.+.+..+
T Consensus       146 ~~~~i~~~f~~l~~~~~~~  164 (188)
T cd04125         146 QSINVEEAFILLVKLIIKR  164 (188)
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=99.88  E-value=5.2e-22  Score=171.60  Aligned_cols=159  Identities=18%  Similarity=0.201  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      ++|+++|.+|||||||++++....+....+..+..    ..........+.+|||||...+..      .    ..  ..
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~----~~~~~~~~~~l~iwDt~G~e~~~~------l----~~--~~   64 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGA----FYLKQWGPYNISIWDTAGREQFHG------L----GS--MY   64 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceE----EEEEEeeEEEEEEEeCCCcccchh------h----HH--HH
Confidence            47999999999999999999988765322222211    111222356789999999875422      1    11  23


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC-------------------ChhHHHHHH
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT-------------------KKKDLLKVA  280 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~-------------------~~~~~~~~~  280 (322)
                      +..+|++|+|||++++.+...  +..++..+.....++.|+|+|+||+|+..                   .+.+..+..
T Consensus        65 ~~~ad~~IlV~Dvt~~~Sf~~--l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~  142 (220)
T cd04126          65 CRGAAAVILTYDVSNVQSLEE--LEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA  142 (220)
T ss_pred             hccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence            678999999999987544433  33344333333334688999999999975                   223333444


Q ss_pred             HHHhcCCC-------------CCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          281 EQFKHLPG-------------YERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       281 ~~~~~~~~-------------~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ..+++..+             ..++++|||++|.||+++|..+.+.+..
T Consensus       143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             HHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            45544333             1369999999999999999999987764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01895 EngA2 EngA2 subfamily

Probab=99.88  E-value=5.2e-21  Score=158.66  Aligned_cols=168  Identities=26%  Similarity=0.353  Sum_probs=116.1

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +++|+++|.+|+|||||+|+|++.........++++.......+...+..+.+|||||+........ ..........+.
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~-~~e~~~~~~~~~   80 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEE-GIEKYSVLRTLK   80 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhc-cHHHHHHHHHHH
Confidence            5789999999999999999999887666666777777766555666778899999999875422111 101111233445


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-hHHHHHHHHHhcCC---CCCcEEE
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFKHLP---GYERIFM  294 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-~~~~~~~~~~~~~~---~~~~~~~  294 (322)
                      .+..+|++++|+|++++.+.....+..   .+...   +.|+++|+||+|+.... .........+.+..   +..++++
T Consensus        81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~---~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
T cd01895          81 AIERADVVLLVIDATEGITEQDLRIAG---LILEE---GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF  154 (174)
T ss_pred             HHhhcCeEEEEEeCCCCcchhHHHHHH---HHHhc---CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence            567889999999998766554433222   22222   46799999999997653 22333333333322   2347999


Q ss_pred             eecCCCCCHHHHHHHHHHH
Q 020714          295 TSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~  313 (322)
                      +||++|.|++++++++.+.
T Consensus       155 ~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         155 ISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EeccCCCCHHHHHHHHHHh
Confidence            9999999999999999875

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.88  E-value=1.7e-21  Score=160.72  Aligned_cols=159  Identities=15%  Similarity=0.118  Sum_probs=105.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .++|+++|.+|||||||++++.+..+.  .....++...........+  ..+.+|||||...+..      .   ..  
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~---~~--   68 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA------M---RE--   68 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH------H---HH--
Confidence            378999999999999999999876543  2222233222222222333  4678999999864321      1   11  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                       ..+..+|++++|+|+++..+.  ..+..|...+... ...+.|+++|+||+|+.............+....+. +++++
T Consensus        69 -~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  144 (164)
T cd04145          69 -QYMRTGEGFLLVFSVTDRGSF--EEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIET  144 (164)
T ss_pred             -HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCC-cEEEe
Confidence             235678999999999764432  2344444444322 234678999999999976543333334445544555 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHh
Q 020714          296 SGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l  314 (322)
                      ||++|.|++++|++|.+.+
T Consensus       145 Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         145 SAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             eCCCCCCHHHHHHHHHHhh
Confidence            9999999999999998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04113 Rab4 Rab4 subfamily

Probab=99.88  E-value=9.1e-22  Score=162.08  Aligned_cols=159  Identities=19%  Similarity=0.202  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +||+++|++|||||||+++|.+....... ...+................+.+|||||...+..            ....
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------------~~~~   68 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS------------VTRS   68 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH------------hHHH
Confidence            47999999999999999999987653322 2222222211111222235678999999753211            1123


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .+..+|++++|+|+++..+.  ..+..|+..+.....++.|+++|+||+|+.............+....+. +++++||+
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~  145 (161)
T cd04113          69 YYRGAAGALLVYDITNRTSF--EALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGL-LFLETSAL  145 (161)
T ss_pred             HhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCC-EEEEEECC
Confidence            45788999999999764333  2455666666544456789999999999976443333334444444554 69999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 020714          299 KGAGLKALTQYLMEQ  313 (322)
Q Consensus       299 ~g~gi~el~~~i~~~  313 (322)
                      +|.|++++++++.+.
T Consensus       146 ~~~~i~~~~~~~~~~  160 (161)
T cd04113         146 TGENVEEAFLKCARS  160 (161)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.88  E-value=4.6e-22  Score=167.42  Aligned_cols=163  Identities=13%  Similarity=0.137  Sum_probs=111.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ..++|+++|.+|||||||++++..+.+... .++.+... .....+......+.+|||+|...+..          +.  
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~----------~~--   70 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDN----------VR--   70 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHh----------hh--
Confidence            467899999999999999999988765421 11221111 11111222235688999999864421          11  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC------------hhHHHHHHHHHh
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQFK  284 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~------------~~~~~~~~~~~~  284 (322)
                      ...+..+|++++|||++++.+.... ...|+..+... .++.|+++|+||+|+...            ..+..+....++
T Consensus        71 ~~~~~~ad~~ilvyDit~~~Sf~~~-~~~w~~~i~~~-~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a  148 (182)
T cd04172          71 PLSYPDSDAVLICFDISRPETLDSV-LKKWKGEIQEF-CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA  148 (182)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHHH-CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH
Confidence            1347889999999999776444321 24566665543 246899999999999642            124455677777


Q ss_pred             cCCCCCcEEEeecCCCCC-HHHHHHHHHHHhh
Q 020714          285 HLPGYERIFMTSGLKGAG-LKALTQYLMEQFK  315 (322)
Q Consensus       285 ~~~~~~~~~~iSa~~g~g-i~el~~~i~~~l~  315 (322)
                      +..+..++++|||++|.| |+++|+.+.++..
T Consensus       149 ~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         149 KQIGAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             HHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence            777765799999999998 9999999998643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04131 Rnd Rnd subfamily

Probab=99.88  E-value=6.8e-22  Score=165.93  Aligned_cols=160  Identities=13%  Similarity=0.121  Sum_probs=109.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +||+++|.+|||||||++++.+..+.... .+ +........+..+  ...+.+|||+|...+....            .
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~-~~-t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~------------~   67 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETY-VP-TVFENYTASFEIDEQRIELSLWDTSGSPYYDNVR------------P   67 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCc-CC-ceEEEEEEEEEECCEEEEEEEEECCCchhhhhcc------------h
Confidence            68999999999999999999987654211 11 1111111112223  3567899999986542211            1


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC------------hhHHHHHHHHHhc
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQFKH  285 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~------------~~~~~~~~~~~~~  285 (322)
                      ..+..+|++|+|||++++.+... ....|+..+... .++.|+++|+||+|+...            ..+..+....+++
T Consensus        68 ~~~~~a~~~ilvfdit~~~Sf~~-~~~~w~~~i~~~-~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~  145 (178)
T cd04131          68 LCYPDSDAVLICFDISRPETLDS-VLKKWRGEIQEF-CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK  145 (178)
T ss_pred             hhcCCCCEEEEEEECCChhhHHH-HHHHHHHHHHHH-CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence            24688999999999977654432 124566555533 246889999999999641            1234456777777


Q ss_pred             CCCCCcEEEeecCCCCC-HHHHHHHHHHHhh
Q 020714          286 LPGYERIFMTSGLKGAG-LKALTQYLMEQFK  315 (322)
Q Consensus       286 ~~~~~~~~~iSa~~g~g-i~el~~~i~~~l~  315 (322)
                      ..+..++++|||++|+| |+++|..+.++..
T Consensus       146 ~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         146 QLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             HhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence            77765799999999995 9999999998644

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01861 Rab6 Rab6 subfamily

Probab=99.88  E-value=1.7e-21  Score=160.29  Aligned_cols=159  Identities=19%  Similarity=0.173  Sum_probs=108.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||+|++++..+.. ...++.+.+.....+...+  ..+.+|||||...+.         .   ...
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~---------~---~~~   67 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR---------S---LIP   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH---------H---HHH
Confidence            379999999999999999999877543 3334444443333333333  458899999965321         1   112


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|+|++++.+.  ..+..++..+......+.|+++|+||+|+.............+....+. +++++||
T Consensus        68 ~~~~~~~~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  144 (161)
T cd01861          68 SYIRDSSVAVVVYDITNRQSF--DNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNA-MFIETSA  144 (161)
T ss_pred             HHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEEeC
Confidence            346788999999999764333  3345566665544334689999999999964433333333444444444 5999999


Q ss_pred             CCCCCHHHHHHHHHHHh
Q 020714          298 LKGAGLKALTQYLMEQF  314 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l  314 (322)
                      ++|.|+++++++|.+.+
T Consensus       145 ~~~~~v~~l~~~i~~~l  161 (161)
T cd01861         145 KAGHNVKELFRKIASAL  161 (161)
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            99999999999998753

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04117 Rab15 Rab15 subfamily

Probab=99.88  E-value=1.2e-21  Score=161.65  Aligned_cols=158  Identities=16%  Similarity=0.214  Sum_probs=108.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|++|||||||++++..+.+.... .+....+.....+...+  ..+.+|||+|...+..            ...
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------------~~~   67 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSH-ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT------------ITK   67 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh------------hHH
Confidence            47999999999999999999987654221 12111111112222333  4678999999764321            111


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|||+++..+.  ..+..|+..+......+.|+++|+||+|+...+....+....+++..+. +++++||
T Consensus        68 ~~~~~~~~~i~v~d~~~~~sf--~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa  144 (161)
T cd04117          68 QYYRRAQGIFLVYDISSERSY--QHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGM-DFFETSA  144 (161)
T ss_pred             HHhcCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence            346788999999999765433  3455677766544334688999999999976554444555566655554 6999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 020714          298 LKGAGLKALTQYLMEQ  313 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~  313 (322)
                      ++|.|++++|++|.+.
T Consensus       145 ~~~~~v~~~f~~l~~~  160 (161)
T cd04117         145 CTNSNIKESFTRLTEL  160 (161)
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.88  E-value=1.6e-21  Score=160.73  Aligned_cols=160  Identities=19%  Similarity=0.235  Sum_probs=107.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ++|+++|++|||||||+|++.+..+.. .....+.+.......+...+..+.+|||||...+..            ....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~------------~~~~   69 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS------------LAPM   69 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH------------HHHH
Confidence            689999999999999999999887654 333333333222222323345688999999753211            1113


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .+..+|++++|+|+++..+.  .....|+..+.....+..|+++|+||+|+.............+....+. +++++||+
T Consensus        70 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~  146 (163)
T cd01860          70 YYRGAAAAIVVYDITSEESF--EKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL-LFFETSAK  146 (163)
T ss_pred             HhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCC-EEEEEECC
Confidence            46778999999999653322  2344566665544445788999999999875332222223333333444 69999999


Q ss_pred             CCCCHHHHHHHHHHHh
Q 020714          299 KGAGLKALTQYLMEQF  314 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l  314 (322)
                      +|.|+++++++|.+.+
T Consensus       147 ~~~~v~~l~~~l~~~l  162 (163)
T cd01860         147 TGENVNELFTEIAKKL  162 (163)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.88  E-value=2.6e-21  Score=159.48  Aligned_cols=161  Identities=19%  Similarity=0.203  Sum_probs=108.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +||+++|.+|+|||||++++.+....... .+..+.......+...+  ..+.+|||||...+.            ....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------------~~~~   67 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY-KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR------------SITS   67 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEECCChHHHH------------HHHH
Confidence            57999999999999999999987653211 12222111112223333  467899999965321            1112


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|||+++..+.  ..+..|+..+.....++.|+++|+||+|+........+....+....+. +++++||
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s~--~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa  144 (164)
T smart00175       68 SYYRGAVGALLVYDITNRESF--ENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL-PFFETSA  144 (164)
T ss_pred             HHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCC-eEEEEeC
Confidence            345788999999999764333  3344566666554445789999999999876433222333344444555 5999999


Q ss_pred             CCCCCHHHHHHHHHHHhhh
Q 020714          298 LKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~  316 (322)
                      ++|.|+++++++|.+.+.+
T Consensus       145 ~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      145 KTNTNVEEAFEELAREILK  163 (164)
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999998765

Rab GTPases are implicated in vesicle trafficking.

>cd04176 Rap2 Rap2 subgroup

Probab=99.87  E-value=1.2e-21  Score=161.62  Aligned_cols=158  Identities=17%  Similarity=0.127  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||++++..+.+.....  .+........+...+  ..+.||||||...+...      ..      
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~------   67 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYD--PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASM------RD------   67 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CchhheEEEEEEECCEEEEEEEEECCCcccccch------HH------
Confidence            689999999999999999998876543211  121111111222233  35779999998755321      11      


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ..+..+|++++|+|+++..+..  .+..|+..+... ...+.|+++|+||+|+.............+....+. +++++|
T Consensus        68 ~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  144 (163)
T cd04176          68 LYIKNGQGFIVVYSLVNQQTFQ--DIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETS  144 (163)
T ss_pred             HHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEec
Confidence            2356789999999997654332  344444444322 224688999999999965433222233444443444 689999


Q ss_pred             cCCCCCHHHHHHHHHHHh
Q 020714          297 GLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l  314 (322)
                      |++|.|+++++++|.+.+
T Consensus       145 a~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         145 AKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             CCCCCCHHHHHHHHHHhc
Confidence            999999999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04127 Rab27A Rab27a subfamily

Probab=99.87  E-value=3.1e-21  Score=161.86  Aligned_cols=163  Identities=17%  Similarity=0.197  Sum_probs=108.5

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEe----------eCCccEEEEeCCCcccCCCCCChh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMT----------KADTQICIFDTPGLMLNKSGYSHK  207 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~----------~~~~~~~l~DtpG~~~~~~~~~~~  207 (322)
                      .++|+++|.+|||||||++++.+..+... .+..+...........          .....+.+|||||...+.      
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------   77 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR------   77 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHH------
Confidence            47899999999999999999987654321 1111211111111111          113567899999975321      


Q ss_pred             hHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714          208 DVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL  286 (322)
Q Consensus       208 ~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~  286 (322)
                            ......+..+|++++|||+++..+.  ..+..|+..+.... .++.|+++|+||+|+........+....++..
T Consensus        78 ------~~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~  149 (180)
T cd04127          78 ------SLTTAFFRDAMGFLLIFDLTNEQSF--LNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK  149 (180)
T ss_pred             ------HHHHHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH
Confidence                  1122346789999999999764332  34556666654322 24578999999999976544333445555555


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      .+. +++++||++|.|+++++++|.+.+.+
T Consensus       150 ~~~-~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         150 YGI-PYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             cCC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            565 69999999999999999999987764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.87  E-value=3.1e-21  Score=176.24  Aligned_cols=170  Identities=26%  Similarity=0.379  Sum_probs=120.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      +....|+++|.||||||||+|+|++.+ +.++..+++|.....+.+...+ ..+.+|||||+.+.....  ..+   -..
T Consensus       155 k~~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~--~gL---g~~  228 (329)
T TIGR02729       155 KLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG--AGL---GHR  228 (329)
T ss_pred             eccccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc--ccH---HHH
Confidence            344679999999999999999999865 3467778888888888776665 789999999997543211  111   223


Q ss_pred             HHhhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhccc--CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQ--APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~--~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                      .+..+..++++++|+|+++.. +.....+..+.+++...  .....|+++|+||+|+.... ...+..+.+.+..+. ++
T Consensus       229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-~~~~~~~~l~~~~~~-~v  306 (329)
T TIGR02729       229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-ELAELLKELKKALGK-PV  306 (329)
T ss_pred             HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH-HHHHHHHHHHHHcCC-cE
Confidence            445567889999999997541 12333344444444322  12357899999999997653 344455555544443 69


Q ss_pred             EEeecCCCCCHHHHHHHHHHHh
Q 020714          293 FMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      +++||++++|+++++++|.+.+
T Consensus       307 i~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       307 FPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             EEEEccCCcCHHHHHHHHHHHh
Confidence            9999999999999999998865

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.87  E-value=3.1e-21  Score=161.54  Aligned_cols=158  Identities=16%  Similarity=0.145  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +||+++|.+|||||||++++..+.+..  ....+........+..++  ..+.+|||+|...+...          .  .
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~--~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~--~   67 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL----------R--P   67 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhh----------h--h
Confidence            689999999999999999999876532  111222221111222334  56789999999754221          1  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHHHh
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK  284 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~~~  284 (322)
                      ..+..+|++++|||++++.+...  +. .|+..+... .++.|+++|+||+|+.....            +..+....++
T Consensus        68 ~~~~~a~~~ilv~d~~~~~s~~~--~~~~w~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a  144 (175)
T cd01874          68 LSYPQTDVFLVCFSVVSPSSFEN--VKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA  144 (175)
T ss_pred             hhcccCCEEEEEEECCCHHHHHH--HHHHHHHHHHHh-CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence            24678899999999976543332  32 355555432 24689999999999865421            1222334444


Q ss_pred             cCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       285 ~~~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      ...+...+++|||++|.|++++|+.++.+.
T Consensus       145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         145 RDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             HHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            444544699999999999999999998864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.87  E-value=2.1e-21  Score=161.14  Aligned_cols=159  Identities=15%  Similarity=0.171  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +||+++|.+|||||||+++++...+.. ..+..+................+.+|||||...+....          .  .
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------~--~   68 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR----------D--G   68 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc----------H--H
Confidence            479999999999999999998655321 22222222211111111224578899999987543211          0  2


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .+..+|++++|+|++++.+.  ..+..|+..+..... +.|+++|+||+|+....... . ...+...... +++++||+
T Consensus        69 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~~~~~-~-~~~~~~~~~~-~~~e~Sa~  142 (166)
T cd00877          69 YYIGGQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDRKVKA-K-QITFHRKKNL-QYYEISAK  142 (166)
T ss_pred             HhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCC-CCcEEEEEEchhcccccCCH-H-HHHHHHHcCC-EEEEEeCC
Confidence            35678999999999764333  335567666654432 68899999999997432211 2 2233333333 69999999


Q ss_pred             CCCCHHHHHHHHHHHhhh
Q 020714          299 KGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~~  316 (322)
                      +|.|++++|++|.+.+.+
T Consensus       143 ~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         143 SNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             CCCChHHHHHHHHHHHHh
Confidence            999999999999988865

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04134 Rho3 Rho3 subfamily

Probab=99.87  E-value=1.7e-21  Score=165.10  Aligned_cols=161  Identities=16%  Similarity=0.139  Sum_probs=106.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +|+++|.+|||||||++++.++.+..... +..... .......+  ...+.+|||||...+....          .  .
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~-~t~~~~-~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~----------~--~   67 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYE-PTVFEN-YVHDIFVDGLHIELSLWDTAGQEEFDRLR----------S--L   67 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccC-Ccceee-eEEEEEECCEEEEEEEEECCCChhccccc----------c--c
Confidence            68999999999999999999877643221 111111 11112222  3568999999987543211          1  2


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH------------HHHHHHHhcC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL------------LKVAEQFKHL  286 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~------------~~~~~~~~~~  286 (322)
                      .+..+|++++|||+++..+..... ..|+..+... .++.|+++|+||+|+.......            ......++..
T Consensus        68 ~~~~a~~~ilv~dv~~~~sf~~~~-~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  145 (189)
T cd04134          68 SYADTDVIMLCFSVDSPDSLENVE-SKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKR  145 (189)
T ss_pred             cccCCCEEEEEEECCCHHHHHHHH-HHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence            467889999999997754443221 2355555532 3468999999999997653211            1223344444


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      .+..++++|||++|.|++++|++|.+.+...
T Consensus       146 ~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~  176 (189)
T cd04134         146 INALRYLECSAKLNRGVNEAFTEAARVALNV  176 (189)
T ss_pred             cCCCEEEEccCCcCCCHHHHHHHHHHHHhcc
Confidence            4444699999999999999999999988754

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.87  E-value=3.1e-21  Score=167.74  Aligned_cols=165  Identities=12%  Similarity=0.113  Sum_probs=112.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ..++|+++|.+|||||||++++....+... .++.+... .....+......+.||||+|...+..          +.  
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~----------~~--   78 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDN----------VR--   78 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHH----------HH--
Confidence            467999999999999999999987765421 11111111 11111112245688999999864321          11  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC------------hhHHHHHHHHHh
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQFK  284 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~------------~~~~~~~~~~~~  284 (322)
                      ...+..+|++++|||+++..+... .+..|+..+.... ++.|+++|+||+|+...            ..+..+....++
T Consensus        79 ~~~~~~ad~vIlVyDit~~~Sf~~-~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a  156 (232)
T cd04174          79 PLCYSDSDAVLLCFDISRPETVDS-ALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALA  156 (232)
T ss_pred             HHHcCCCcEEEEEEECCChHHHHH-HHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHH
Confidence            135789999999999976544432 1245666655332 46789999999998642            234445677788


Q ss_pred             cCCCCCcEEEeecCCCC-CHHHHHHHHHHHhhhc
Q 020714          285 HLPGYERIFMTSGLKGA-GLKALTQYLMEQFKDL  317 (322)
Q Consensus       285 ~~~~~~~~~~iSa~~g~-gi~el~~~i~~~l~~~  317 (322)
                      +..+...+++|||++|. ||+++|+.+...+.+.
T Consensus       157 ~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         157 KQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             HHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence            77777569999999998 8999999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04110 Rab35 Rab35 subfamily

Probab=99.87  E-value=3.6e-21  Score=164.46  Aligned_cols=162  Identities=19%  Similarity=0.162  Sum_probs=110.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ..++|+++|++|||||||++++.+..+.. ..+..+......  .+...+  ..+.||||||...+..            
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~l~l~D~~G~~~~~~------------   70 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR--TVEINGERVKLQIWDTAGQERFRT------------   70 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEE--EEEECCEEEEEEEEeCCCchhHHH------------
Confidence            36899999999999999999999876532 122222211111  122223  4678999999764311            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      .....+..+|++++|+|+++..+.  ..+..|+..+... .+..|+++|+||+|+.............+....+. ++++
T Consensus        71 ~~~~~~~~a~~iilv~D~~~~~s~--~~~~~~~~~i~~~-~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e  146 (199)
T cd04110          71 ITSTYYRGTHGVIVVYDVTNGESF--VNVKRWLQEIEQN-CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGI-SLFE  146 (199)
T ss_pred             HHHHHhCCCcEEEEEEECCCHHHH--HHHHHHHHHHHHh-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence            112346778999999999764332  3455677666543 24678999999999976543333334444444454 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.||+++|++|.+.+...
T Consensus       147 ~Sa~~~~gi~~lf~~l~~~~~~~  169 (199)
T cd04110         147 TSAKENINVEEMFNCITELVLRA  169 (199)
T ss_pred             EECCCCcCHHHHHHHHHHHHHHh
Confidence            99999999999999999988764

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=7.1e-21  Score=178.26  Aligned_cols=167  Identities=23%  Similarity=0.347  Sum_probs=116.9

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ..|+++|.||||||||||+|++.+ +.++..+++|.....+.+... +..+.++||||+..... .. ..   .....+.
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~-~~-~g---Lg~~fLr  232 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS-EG-VG---LGHQFLR  232 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCccccc-cc-ch---HHHHHHH
Confidence            479999999999999999999876 346678889988888776655 67899999999975322 10 11   1233455


Q ss_pred             hcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhccc--CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          219 AVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQ--APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~--~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      .+..++++++|+|+++.. .........+..++...  ....+|+++|+||+|+.........    +.+..+ .+++++
T Consensus       233 hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~----l~~~l~-~~i~~i  307 (424)
T PRK12297        233 HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEE----FKEKLG-PKVFPI  307 (424)
T ss_pred             HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHH----HHHHhC-CcEEEE
Confidence            667889999999997531 12223333444444332  1235889999999998543222222    222223 369999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||++|+|+++|+++|.+.+...
T Consensus       308 SA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        308 SALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999888654

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=7.9e-21  Score=176.99  Aligned_cols=172  Identities=26%  Similarity=0.346  Sum_probs=120.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ...|+|+|.||||||||+|+|++.+. .++..++||+....+.+...+ ..+.|+||||+......  ...+   -...+
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~--~~~L---g~~~l  232 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE--GAGL---GIRFL  232 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc--hhhH---HHHHH
Confidence            34699999999999999999998764 788899999999998877654 46999999999754321  0111   22334


Q ss_pred             hhcccccEEEEEEeCCCC-CCCcHHHHHHHHHHhccc--CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCC-CcEE
Q 020714          218 SAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQ--APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY-ERIF  293 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~-~~~~~~~~~~~l~~~~~~--~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  293 (322)
                      ..+..+|++++|+|++.. ..........+++++...  .....|+++|+||+|+..... ..+....+....+. .+++
T Consensus       233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-l~~~l~~l~~~~~~~~~Vi  311 (390)
T PRK12298        233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-AEERAKAIVEALGWEGPVY  311 (390)
T ss_pred             HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-HHHHHHHHHHHhCCCCCEE
Confidence            567888999999998621 112222333444444432  123578999999999975432 33333444333332 2689


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhc
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++||+++.|+++|+++|.+.+.+.
T Consensus       312 ~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        312 LISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             EEECCCCcCHHHHHHHHHHHhhhC
Confidence            999999999999999999998764

>PTZ00369 Ras-like protein; Provisional

Probab=99.87  E-value=4e-21  Score=162.86  Aligned_cols=162  Identities=12%  Similarity=0.127  Sum_probs=106.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ..++|+++|.+|||||||++++.+..+... .+..+.+   ....+...  ...+.+|||||...+..      .     
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~Dt~G~~~~~~------l-----   69 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDS---YRKQCVIDEETCLLDILDTAGQEEYSA------M-----   69 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhE---EEEEEEECCEEEEEEEEeCCCCccchh------h-----
Confidence            358999999999999999999998765322 1212211   12222223  34577999999875432      1     


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                       ....+..+|++++|+|+++..+..  .+..|...+... ..++.|+++|+||+|+.............+....+. +++
T Consensus        70 -~~~~~~~~d~iilv~D~s~~~s~~--~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~-~~~  145 (189)
T PTZ00369         70 -RDQYMRTGQGFLCVYSITSRSSFE--EIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI-PFL  145 (189)
T ss_pred             -HHHHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCC-EEE
Confidence             112456889999999997654322  344455444322 234678999999999865433222233334443444 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhc
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++||++|.|++++|++|.+.+.+.
T Consensus       146 e~Sak~~~gi~~~~~~l~~~l~~~  169 (189)
T PTZ00369        146 ETSAKQRVNVDEAFYELVREIRKY  169 (189)
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999887653

>cd04171 SelB SelB subfamily

Probab=99.87  E-value=9.7e-21  Score=155.95  Aligned_cols=155  Identities=18%  Similarity=0.339  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeee--cCCCCceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .|+++|.+|||||||+|+|++......  ...+++|........... +..+.+|||||+..+            .....
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~------------~~~~~   69 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF------------IKNML   69 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH------------HHHHH
Confidence            589999999999999999997532221  123445554443334444 678999999997532            12333


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcC-CCCCcEE
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHL-PGYERIF  293 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~-~~~~~~~  293 (322)
                      ..+..+|++++|+|+++....+.......+...+     ..|+++|+||+|+.....   ...+....+... ....+++
T Consensus        70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (164)
T cd04171          70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELLG-----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIF  144 (164)
T ss_pred             hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhC-----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence            4567899999999996543222222222222221     237999999999976421   122333333332 0224699


Q ss_pred             EeecCCCCCHHHHHHHHHH
Q 020714          294 MTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~  312 (322)
                      ++||++|.|+++++++|.+
T Consensus       145 ~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         145 PVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             EEeCCCCcCHHHHHHHHhh
Confidence            9999999999999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.87  E-value=4.7e-21  Score=157.39  Aligned_cols=157  Identities=16%  Similarity=0.153  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||+|++.+..+...  ...++...........+  ..+.+|||||...+..      .   .   .
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------l---~---~   67 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDE--YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA------M---R---D   67 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCC--cCCcchheEEEEEEECCEEEEEEEEECCCCcchHH------H---H---H
Confidence            6899999999999999999998765321  11222222222222333  3467899999864311      1   1   1


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ..+..+|++++|+|+++..+.  ..+..|...+... ...+.|+++|+||+|+..... .......+....+. +++++|
T Consensus        68 ~~~~~~~~~i~v~~~~~~~s~--~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~~S  143 (162)
T cd04138          68 QYMRTGEGFLCVFAINSRKSF--EDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTV-SSRQGQDLAKSYGI-PYIETS  143 (162)
T ss_pred             HHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccccccee-cHHHHHHHHHHhCC-eEEEec
Confidence            245678999999999764332  2233344433322 224678999999999976422 22223333333444 699999


Q ss_pred             cCCCCCHHHHHHHHHHHh
Q 020714          297 GLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l  314 (322)
                      |++|.|++++|++|.+.+
T Consensus       144 a~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         144 AKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PLN03118 Rab family protein; Provisional

Probab=99.87  E-value=3.9e-21  Score=165.75  Aligned_cols=166  Identities=16%  Similarity=0.151  Sum_probs=108.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...++|+++|.+|||||||+++|.+..+....+..+.+.......+......+.||||||...+..      .      .
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------~------~   79 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT------L------T   79 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH------H------H
Confidence            346899999999999999999999877644443333332222211212235678999999865321      1      1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHH-HHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIR-LIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~-~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ...+..+|++++|||+++..+...  +.. |...+... .....|+++|+||+|+........+....+....+. ++++
T Consensus        80 ~~~~~~~d~~vlv~D~~~~~sf~~--~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e  156 (211)
T PLN03118         80 SSYYRNAQGIILVYDVTRRETFTN--LSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGC-LFLE  156 (211)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-EEEE
Confidence            134578899999999976433322  222 32222211 123468999999999976443333333344444454 5899


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.|++++|++|.+.+...
T Consensus       157 ~SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        157 CSAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999888653

>cd01892 Miro2 Miro2 subfamily

Probab=99.87  E-value=4.3e-21  Score=159.76  Aligned_cols=163  Identities=12%  Similarity=0.087  Sum_probs=107.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceee-eEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH-EVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ++.++|+++|.+|||||||++++++..+. +....+++.. .....+...+  ..+.+||++|...+...          
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----------   70 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL----------   70 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc----------
Confidence            46789999999999999999999987764 1111222211 1111122333  46789999998754221          


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                        ....+..+|++++|+|++++.+  ...+..|+..+...  .+.|+++|+||+|+.............+....+...++
T Consensus        71 --~~~~~~~~d~~llv~d~~~~~s--~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  144 (169)
T cd01892          71 --NDAELAACDVACLVYDSSDPKS--FSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPL  144 (169)
T ss_pred             --chhhhhcCCEEEEEEeCCCHHH--HHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCE
Confidence              1123578899999999966422  22344555554322  35789999999999654332222233444555554579


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhh
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++||++|.|++++|+.|.+.+..
T Consensus       145 ~~Sa~~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         145 HFSSKLGDSSNELFTKLATAAQY  167 (169)
T ss_pred             EEEeccCccHHHHHHHHHHHhhC
Confidence            99999999999999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01875 RhoG RhoG subfamily

Probab=99.87  E-value=2.7e-21  Score=164.16  Aligned_cols=160  Identities=12%  Similarity=0.121  Sum_probs=108.5

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      .++|+++|.+|||||||+.++..+.+... .+..+.   ........+  ...+.+|||+|...+..          +..
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~---~~~~~~~~~~~~~~l~i~Dt~G~e~~~~----------l~~   69 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD---NYSAQTAVDGRTVSLNLWDTAGQEEYDR----------LRT   69 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEe---eeEEEEEECCEEEEEEEEECCCchhhhh----------hhh
Confidence            47899999999999999999998765321 122221   111112223  35678999999875422          111


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHH
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQ  282 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~  282 (322)
                        ..+..+|++|+|||+++..+..  .+. .|...+... .++.|+++|+||+|+.....            ...+....
T Consensus        70 --~~~~~a~~~ilvydit~~~Sf~--~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~  144 (191)
T cd01875          70 --LSYPQTNVFIICFSIASPSSYE--NVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA  144 (191)
T ss_pred             --hhccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence              2467899999999997755433  232 355544432 34689999999999965422            12234555


Q ss_pred             HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++...+..++++|||++|.||+++|++|.+.+..
T Consensus       145 ~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         145 LAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             HHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence            6665564469999999999999999999988765

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01862 Rab7 Rab7 subfamily

Probab=99.87  E-value=4.7e-21  Score=159.29  Aligned_cols=163  Identities=19%  Similarity=0.185  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|++|||||||+|++.+..+..... +..+.+.....+...  ...+.+|||||...+.            ....
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------------~~~~   67 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ------------SLGV   67 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcC-CccceEEEEEEEEECCEEEEEEEEeCCChHHHH------------hHHH
Confidence            479999999999999999999876432211 111111111112222  3456799999975321            1112


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh----cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM----GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~----~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                      ..+..+|++|+++|+++..+.  ..+..|...+    ......+.|+++|+||+|+........+....+....+..+++
T Consensus        68 ~~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  145 (172)
T cd01862          68 AFYRGADCCVLVYDVTNPKSF--ESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYF  145 (172)
T ss_pred             HHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEE
Confidence            346788999999999764332  2233343332    2222336889999999999743322223334444445545799


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhc
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++||++|.|+++++++|.+.+.+.
T Consensus       146 ~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         146 ETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999988764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.87  E-value=3.4e-21  Score=166.99  Aligned_cols=163  Identities=17%  Similarity=0.184  Sum_probs=111.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeee-eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ...++|+++|.+|||||||+++++.+.+. ...+..+.+..............+.+|||||...+..          +..
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~   80 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRD   80 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhh----------hhH
Confidence            46789999999999999999998766543 2333344433332221222346789999999875422          111


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                        ..+..+|++|+|||+++..+.  ..+..|+..+... .++.|+++|+||+|+....... ... .+....++ ++++|
T Consensus        81 --~~~~~~~~~ilvfD~~~~~s~--~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~~v~~-~~~-~~~~~~~~-~~~e~  152 (219)
T PLN03071         81 --GYYIHGQCAIIMFDVTARLTY--KNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKA-KQV-TFHRKKNL-QYYEI  152 (219)
T ss_pred             --HHcccccEEEEEEeCCCHHHH--HHHHHHHHHHHHh-CCCCcEEEEEEchhhhhccCCH-HHH-HHHHhcCC-EEEEc
Confidence              246788999999999775433  3455677666533 2468999999999996432212 222 33344444 59999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||++|.|++++|++|.+.+.+.
T Consensus       153 SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        153 SAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999988653

>PLN03110 Rab GTPase; Provisional

Probab=99.87  E-value=4.3e-21  Score=166.05  Aligned_cols=163  Identities=17%  Similarity=0.183  Sum_probs=112.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..++|+++|.+|||||||+++|.+..+.... .+....+.....+...  ...+.||||||...+..            .
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~-~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~------------~   77 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA------------I   77 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH------------H
Confidence            4689999999999999999999987654221 1212222222222233  34788999999764211            1


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ....+..++++++|||+++..+.  ..+..|+..+......+.|+++|+||+|+........+....+....+. +++++
T Consensus        78 ~~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~  154 (216)
T PLN03110         78 TSAYYRGAVGALLVYDITKRQTF--DNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL-SFLET  154 (216)
T ss_pred             HHHHhCCCCEEEEEEECCChHHH--HHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCC-EEEEE
Confidence            12346788999999999764433  3455666666554445689999999999976544334445555555555 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      ||++|.|++++|++|.+.+..
T Consensus       155 SA~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        155 SALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999988865

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=6.6e-21  Score=181.52  Aligned_cols=161  Identities=24%  Similarity=0.330  Sum_probs=125.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|.||||||||+|+|++...+.+...+|+|++.........+..+.+|||||+.....    .........+...+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~----~~~~~~~~~~~~~~   76 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDD----GLDKQIREQAEIAI   76 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcch----hHHHHHHHHHHHHH
Confidence            48999999999999999999988778888999999888777777888999999999864321    12233344555677


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      ..+|++++|+|+..+.+..+..+..++...      ++|+++|+||+|+.......    ..+. ..++.+++++||++|
T Consensus        77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~------~~piilVvNK~D~~~~~~~~----~~~~-~lg~~~~~~vSa~~g  145 (429)
T TIGR03594        77 EEADVILFVVDGREGLTPEDEEIAKWLRKS------GKPVILVANKIDGKKEDAVA----AEFY-SLGFGEPIPISAEHG  145 (429)
T ss_pred             hhCCEEEEEEeCCCCCCHHHHHHHHHHHHh------CCCEEEEEECccCCcccccH----HHHH-hcCCCCeEEEeCCcC
Confidence            889999999999887766666666777653      46799999999987644322    1222 245667999999999


Q ss_pred             CCHHHHHHHHHHHhhh
Q 020714          301 AGLKALTQYLMEQFKD  316 (322)
Q Consensus       301 ~gi~el~~~i~~~l~~  316 (322)
                      .|++++++++.+.+..
T Consensus       146 ~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       146 RGIGDLLDAILELLPE  161 (429)
T ss_pred             CChHHHHHHHHHhcCc
Confidence            9999999999988754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04149 Arf6 Arf6 subfamily

Probab=99.87  E-value=5e-21  Score=159.20  Aligned_cols=156  Identities=14%  Similarity=0.115  Sum_probs=100.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ..++|+++|.+|||||||++++.........+..+.+.  .  .....+..+.+|||||...+..            ...
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~--~--~~~~~~~~~~l~Dt~G~~~~~~------------~~~   71 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--E--TVTYKNVKFNVWDVGGQDKIRP------------LWR   71 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccce--E--EEEECCEEEEEEECCCCHHHHH------------HHH
Confidence            46899999999999999999998765443322222222  1  2234567899999999863211            112


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh--cCCC-CCcEE
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HLPG-YERIF  293 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~--~~~~-~~~~~  293 (322)
                      ..+..+|++++|+|+++..+.  .....++..+. .....+.|+++|+||+|+.... ..++....+.  .... ..+++
T Consensus        72 ~~~~~a~~ii~v~D~t~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~  148 (168)
T cd04149          72 HYYTGTQGLIFVVDSADRDRI--DEARQELHRIINDREMRDALLLVFANKQDLPDAM-KPHEIQEKLGLTRIRDRNWYVQ  148 (168)
T ss_pred             HHhccCCEEEEEEeCCchhhH--HHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC-CHHHHHHHcCCCccCCCcEEEE
Confidence            346889999999999765332  23334444433 2223467899999999986532 1122222211  1111 12579


Q ss_pred             EeecCCCCCHHHHHHHHHH
Q 020714          294 MTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~  312 (322)
                      ++||++|.|++++|+||.+
T Consensus       149 ~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         149 PSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             EeeCCCCCChHHHHHHHhc
Confidence            9999999999999999964

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04128 Spg1 Spg1p

Probab=99.87  E-value=4e-21  Score=161.83  Aligned_cols=160  Identities=14%  Similarity=0.185  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      +||+++|.+|||||||++++..+.+.. ..++.+....  ...+..++  ..+.+|||+|...+..          .  .
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~--~~~i~~~~~~~~l~iwDt~G~~~~~~----------~--~   66 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFM--EKTISIRGTEITFSIWDLGGQREFIN----------M--L   66 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE--EEEEEECCEEEEEEEEeCCCchhHHH----------h--h
Confidence            479999999999999999998876543 2222222221  11222333  5678999999864321          1  1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC-----hhHHHHHHHHHhcCCCCCc
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----KKDLLKVAEQFKHLPGYER  291 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~  291 (322)
                      ...+..+|++++|||+++..+..  .+..|+..+........| ++|+||+|+...     ..........+++..+. +
T Consensus        67 ~~~~~~a~~iilv~D~t~~~s~~--~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~  142 (182)
T cd04128          67 PLVCNDAVAILFMFDLTRKSTLN--SIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA-P  142 (182)
T ss_pred             HHHCcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCC-E
Confidence            13468899999999997654332  345566665443233455 688999999631     11223344556665664 6


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +++|||++|.|++++|+++.+.+.+.
T Consensus       143 ~~e~SAk~g~~v~~lf~~l~~~l~~~  168 (182)
T cd04128         143 LIFCSTSHSINVQKIFKIVLAKAFDL  168 (182)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999888753

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.87  E-value=2.5e-20  Score=176.49  Aligned_cols=163  Identities=27%  Similarity=0.356  Sum_probs=121.9

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....+++|+++|.||||||||+|+|++.....++..+++|++.....+...+..+.+|||||+..+..    ......+.
T Consensus       199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~----~ie~~gi~  274 (442)
T TIGR00450       199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD----FVERLGIE  274 (442)
T ss_pred             HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh----HHHHHHHH
Confidence            34567899999999999999999999987777888899999888777777888999999999975321    11223445


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      .+...+..+|++++|+|++++.+..+.    ++..+..   .++|+++|+||+|+...  ..    ..+.+..+. ++++
T Consensus       275 ~~~~~~~~aD~il~V~D~s~~~s~~~~----~l~~~~~---~~~piIlV~NK~Dl~~~--~~----~~~~~~~~~-~~~~  340 (442)
T TIGR00450       275 KSFKAIKQADLVIYVLDASQPLTKDDF----LIIDLNK---SKKPFILVLNKIDLKIN--SL----EFFVSSKVL-NSSN  340 (442)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCChhHH----HHHHHhh---CCCCEEEEEECccCCCc--ch----hhhhhhcCC-ceEE
Confidence            666778899999999999876544332    4444432   25689999999999653  11    122222333 5899


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +||++ .||+++++.+.+.+.+
T Consensus       341 vSak~-~gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       341 LSAKQ-LKIKALVDLLTQKINA  361 (442)
T ss_pred             EEEec-CCHHHHHHHHHHHHHH
Confidence            99998 5999999988887765

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=8.7e-21  Score=179.81  Aligned_cols=174  Identities=25%  Similarity=0.317  Sum_probs=121.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      .+....|+|+|.||||||||+|+|++.+. .++..+++|.....+.+...+..+.++||||+.....     .....-..
T Consensus       156 Lk~~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas-----~g~gLg~~  229 (500)
T PRK12296        156 LKSVADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS-----EGKGLGLD  229 (500)
T ss_pred             ecccceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccc-----hhhHHHHH
Confidence            34456799999999999999999998753 4677899999988888877788999999999974321     11111223


Q ss_pred             HHhhcccccEEEEEEeCCCCC--CCcHH---HHHHHHHHhccc--------CCCCCcEEEEEeCCCCCCChhHHHHHHHH
Q 020714          216 AWSAVNLFEVLMVVFDVHRHL--TSPDS---RVIRLIERMGKQ--------APPKQKRVLCMNKVDLVTKKKDLLKVAEQ  282 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~--~~~~~---~~~~~l~~~~~~--------~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~  282 (322)
                      .+..+..||++++|+|++...  .....   .+...+..+...        ....+|+|+|+||+|+.......+.....
T Consensus       230 fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~  309 (500)
T PRK12296        230 FLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPE  309 (500)
T ss_pred             HHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHH
Confidence            455678899999999996521  11111   222223322210        12357899999999997654333333333


Q ss_pred             HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +.. .+. ++++|||++|.|+++|+++|.+.+...
T Consensus       310 l~~-~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        310 LEA-RGW-PVFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             HHH-cCC-eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            433 244 699999999999999999999988664

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.86  E-value=4.3e-21  Score=160.11  Aligned_cols=157  Identities=14%  Similarity=0.130  Sum_probs=104.8

Q ss_pred             EEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      |+++|.+|||||||++++.+..+..... + +...........++  ..+.+|||||...+....            ...
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------~~~   66 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYV-P-TVFENYSADVEVDGKPVELGLWDTAGQEDYDRLR------------PLS   66 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCC-C-cEEeeeeEEEEECCEEEEEEEEECCCCcccchhc------------hhh
Confidence            5799999999999999999876543221 1 11121111222333  357899999987543211            124


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHHHhcC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFKHL  286 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~~~~~  286 (322)
                      +..+|++++|||+++..+..  .+ ..|+..+... .++.|+++|+||+|+.....            ...+....++..
T Consensus        67 ~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  143 (174)
T smart00174       67 YPDTDVFLICFSVDSPASFE--NVKEKWYPEVKHF-CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR  143 (174)
T ss_pred             cCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhh-CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence            67889999999997643332  23 2355555433 34689999999999975322            222334455555


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .+..++++|||++|.|++++|+.+.+.+.
T Consensus       144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~  172 (174)
T smart00174      144 IGAVKYLECSALTQEGVREVFEEAIRAAL  172 (174)
T ss_pred             cCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence            66557999999999999999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04124 RabL2 RabL2 subfamily

Probab=99.86  E-value=7.5e-21  Score=156.92  Aligned_cols=159  Identities=17%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ++|+++|.+|||||||++++....+.... ...+.+..............+.+|||||...+..            ....
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~~   68 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT------------MHAS   68 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh------------hhHH
Confidence            47999999999999999999876543221 1111121111111222234678999999864322            1113


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .+..+|++++|+|++++.+.  ..+..|+..+... .++.|+++|+||+|+...  .. .....+....+. +++++||+
T Consensus        69 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~--~~-~~~~~~~~~~~~-~~~~~Sa~  141 (161)
T cd04124          69 YYHKAHACILVFDVTRKITY--KNLSKWYEELREY-RPEIPCIVVANKIDLDPS--VT-QKKFNFAEKHNL-PLYYVSAA  141 (161)
T ss_pred             HhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHh-CCCCcEEEEEECccCchh--HH-HHHHHHHHHcCC-eEEEEeCC
Confidence            46788999999999765433  2344566665432 246789999999998532  11 222233333444 69999999


Q ss_pred             CCCCHHHHHHHHHHHhhhc
Q 020714          299 KGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~~~  317 (322)
                      +|.|++++++.+.+.+.+.
T Consensus       142 ~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         142 DGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             CCCCHHHHHHHHHHHHHhc
Confidence            9999999999999887654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.86  E-value=5.8e-21  Score=157.27  Aligned_cols=157  Identities=20%  Similarity=0.203  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEE--Ee--eCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV--MT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ++|+++|.+|+|||||++++.+..+.... .+..+.+.....  +.  .....+.+|||||...+..          .  
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~--   67 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDY-KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA----------I--   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH----------h--
Confidence            47999999999999999999987543211 111112211111  21  2245789999999753211          1  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ....+..+|++++|+|+++..+.  ..+..|+..+... .++.|+++|+||+|+........+....+.+..+. +++++
T Consensus        68 ~~~~~~~~~~~v~v~d~~~~~s~--~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~  143 (162)
T cd04106          68 TKAYYRGAQACILVFSTTDRESF--EAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRT  143 (162)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEE
Confidence            12346789999999999764322  3455666665432 34688999999999976544333444555555565 69999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 020714          296 SGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~  313 (322)
                      ||++|.|+++++++|...
T Consensus       144 Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         144 SVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            999999999999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04116 Rab9 Rab9 subfamily

Probab=99.86  E-value=7.3e-21  Score=158.15  Aligned_cols=162  Identities=17%  Similarity=0.095  Sum_probs=103.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ..++|+++|.+|||||||++++.+..+... .+..+................+.+|||||...+..            ..
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------------~~   71 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS------------LR   71 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH------------hH
Confidence            468999999999999999999987665432 11222111111111222234678999999754211            11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc----cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~----~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                      ...+..+|++++|||+++..+..  .+..|...+..    ....+.|+++|+||+|+... ....+....+....+..++
T Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~  148 (170)
T cd04116          72 TPFYRGSDCCLLTFAVDDSQSFQ--NLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-QVSTEEAQAWCRENGDYPY  148 (170)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHH--hHHHHHHHHHHhcccccCCCCcEEEEEECcccccc-ccCHHHHHHHHHHCCCCeE
Confidence            13467889999999997643332  23344443321    22346899999999999743 2222334444444555579


Q ss_pred             EEeecCCCCCHHHHHHHHHHHh
Q 020714          293 FMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      +++||++|.|++++|+++.+.+
T Consensus       149 ~e~Sa~~~~~v~~~~~~~~~~~  170 (170)
T cd04116         149 FETSAKDATNVAAAFEEAVRRV  170 (170)
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            9999999999999999998753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.5e-21  Score=159.70  Aligned_cols=166  Identities=16%  Similarity=0.145  Sum_probs=133.3

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....+||+++|.+|||||-|+.++...++.. ...+.|+...+....+.......+||||+|++++....          
T Consensus        11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit----------   80 (222)
T KOG0087|consen   11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT----------   80 (222)
T ss_pred             cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc----------
Confidence            3457899999999999999999999887653 33344555444443343344567899999998764311          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                        -.+++.|-+.++|||++.+.+.+  .+..||.++.....+++++++|+||+||.+.+.+..+....+++..+. .+++
T Consensus        81 --SaYYrgAvGAllVYDITr~~Tfe--nv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l-~f~E  155 (222)
T KOG0087|consen   81 --SAYYRGAVGALLVYDITRRQTFE--NVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL-FFLE  155 (222)
T ss_pred             --chhhcccceeEEEEechhHHHHH--HHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCc-eEEE
Confidence              14578899999999998876664  588999999998888999999999999999888888888888887777 4999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +||..+.|+++.|+.+...+..
T Consensus       156 tSAl~~tNVe~aF~~~l~~I~~  177 (222)
T KOG0087|consen  156 TSALDATNVEKAFERVLTEIYK  177 (222)
T ss_pred             ecccccccHHHHHHHHHHHHHH
Confidence            9999999999999998887765

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.86  E-value=7.2e-21  Score=159.15  Aligned_cols=157  Identities=14%  Similarity=0.155  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||+.++..+.+....  ..+........+...+  ..+.+|||||...+..          +.  .
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~   67 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR----------LR--P   67 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcC--CCcceeeeEEEEEECCEEEEEEEEECCCchhhhh----------hh--h
Confidence            68999999999999999999876653211  1111111111122333  5678999999864422          11  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHHHh
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK  284 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~~~  284 (322)
                      ..+..+|++|+|||++++.+...  +. .|+..+... .++.|+++|+||+|+.....            ........++
T Consensus        68 ~~~~~~d~~ilv~d~~~~~sf~~--~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  144 (174)
T cd01871          68 LSYPQTDVFLICFSLVSPASFEN--VRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  144 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence            24678999999999977543332  32 355444432 24689999999999965321            2223344455


Q ss_pred             cCCCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       285 ~~~~~~~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      ...+..++++|||++|.|++++|+.+.+.
T Consensus       145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         145 KEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             HHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence            54554469999999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=1.6e-20  Score=179.18  Aligned_cols=160  Identities=25%  Similarity=0.368  Sum_probs=122.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      ++|+++|.||||||||+|+|.+.+.+.+...+++|++.........+..+.+|||||+.....    .........+...
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~----~~~~~~~~~~~~~   77 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD----GFEKQIREQAELA   77 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch----hHHHHHHHHHHHH
Confidence            479999999999999999999988777888899998887777777788999999999975211    1222233444556


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      +..+|++++|+|++.+.+..+..+..++...      +.|+++|+||+|+.......    ..+.. .++.+++++||++
T Consensus        78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~~~~~----~~~~~-lg~~~~~~iSa~~  146 (435)
T PRK00093         78 IEEADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDEEADA----YEFYS-LGLGEPYPISAEH  146 (435)
T ss_pred             HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccchhhH----HHHHh-cCCCCCEEEEeeC
Confidence            7889999999999877666666666777654      46799999999975532211    22222 3555689999999


Q ss_pred             CCCHHHHHHHHHHHh
Q 020714          300 GAGLKALTQYLMEQF  314 (322)
Q Consensus       300 g~gi~el~~~i~~~l  314 (322)
                      |.|+++++++|....
T Consensus       147 g~gv~~l~~~I~~~~  161 (435)
T PRK00093        147 GRGIGDLLDAILEEL  161 (435)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999998743

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.86  E-value=5.1e-21  Score=154.25  Aligned_cols=168  Identities=17%  Similarity=0.111  Sum_probs=122.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ...++|.+.|.+|||||||+|++...++..-. .+.|...-+....+......+++|||+|++.|....           
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg-----------   75 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG-----------   75 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc-----------
Confidence            45789999999999999999999877654221 222222222222233334567899999998765422           


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC----CCCcEEEEEeCCCCCCC--hhHHHHHHHHHhcCCCC
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP----PKQKRVLCMNKVDLVTK--KKDLLKVAEQFKHLPGY  289 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~----~~~p~ivV~NK~Dl~~~--~~~~~~~~~~~~~~~~~  289 (322)
                       ...++.+|.+++|+|+....+...  +..|-+++..+..    ..-|+|+++||+|+...  +.+.......++...+.
T Consensus        76 -~aFYRgaDcCvlvydv~~~~Sfe~--L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn  152 (210)
T KOG0394|consen   76 -VAFYRGADCCVLVYDVNNPKSFEN--LENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN  152 (210)
T ss_pred             -cceecCCceEEEEeecCChhhhcc--HHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence             245799999999999977655543  4445455443333    34789999999999763  45667778888888888


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          290 ERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      .|+|++|||.+.|+++.|+.+.+.....+
T Consensus       153 ipyfEtSAK~~~NV~~AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  153 IPYFETSAKEATNVDEAFEEIARRALANE  181 (210)
T ss_pred             ceeEEecccccccHHHHHHHHHHHHHhcc
Confidence            89999999999999999999998877654

>cd04123 Rab21 Rab21 subfamily

Probab=99.86  E-value=1.6e-20  Score=154.27  Aligned_cols=159  Identities=19%  Similarity=0.238  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +||+++|.+|||||||+|++.+..+.... .+.++...........  ...+.+|||||...+..          .  .-
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~--~~   67 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH-ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA----------L--GP   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCc-CCccceeEEEEEEEECCEEEEEEEEECCchHHHHH----------h--hH
Confidence            47999999999999999999987654321 1222222222222222  34688999999753211          1  11


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|+|+++..+.  .....|+..+......+.|+++|+||+|+........+....+....+. +++++||
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~  144 (162)
T cd04123          68 IYYRDADGAILVYDITDADSF--QKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGA-KHFETSA  144 (162)
T ss_pred             HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence            235678999999999664322  3344555555544334688999999999975433222333334444454 5899999


Q ss_pred             CCCCCHHHHHHHHHHHh
Q 020714          298 LKGAGLKALTQYLMEQF  314 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l  314 (322)
                      ++|.|+++++++|.+.+
T Consensus       145 ~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         145 KTGKGIEELFLSLAKRM  161 (162)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04135 Tc10 TC10 subfamily

Probab=99.86  E-value=6.5e-21  Score=159.01  Aligned_cols=159  Identities=14%  Similarity=0.165  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|+|||||++++.+..+....  ..+........+..++  ..+.+|||||...+.....            
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------   66 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY--VPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP------------   66 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeeeEEEEEECCEEEEEEEEeCCCccccccccc------------
Confidence            47999999999999999999887654221  1222222111222333  3467999999875432111            


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHHHhc
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFKH  285 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~~~~  285 (322)
                      ..+..+|++++|+|+.+..+..... ..|+..+... .++.|+++|+||+|+.+...            ........++.
T Consensus        67 ~~~~~~~~~ilv~~~~~~~s~~~~~-~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  144 (174)
T cd04135          67 LSYPMTDVFLICFSVVNPASFQNVK-EEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK  144 (174)
T ss_pred             ccCCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence            2467889999999997654433221 1344444322 45689999999999865421            11223444555


Q ss_pred             CCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          286 LPGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       286 ~~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      ..+..++++|||++|.|++++|+.+++.+
T Consensus       145 ~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         145 EIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             HcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            55655799999999999999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.86  E-value=2.5e-21  Score=174.32  Aligned_cols=159  Identities=24%  Similarity=0.344  Sum_probs=120.7

Q ss_pred             chHHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCChhhHHHHHHhhCC
Q 020714           23 NPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQEPTWDEKYRERTD   85 (322)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~~~~w~~~~~~~~~   85 (322)
                      .+||.|||.++.++...  ..+.+|+++++.|+|.|... +                ||+|+++++..+.|..++.+.+.
T Consensus         4 ~~wfpgHm~k~~~~l~~--~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~   81 (287)
T PRK09563          4 IQWFPGHMAKARREIKE--NLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGI   81 (287)
T ss_pred             CcCcHHHHHHHHHHHHH--HhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCC
Confidence            57999999999999876  67789999999999999877 4                79999877667889999987666


Q ss_pred             eEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCee
Q 020714           86 RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV  164 (322)
Q Consensus        86 ~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~  164 (322)
                      .+++.++ ++.+..++.+.          ...++.....     ....+......++++++|.||||||||+|+|.+...
T Consensus        82 ~vi~vSa~~~~gi~~L~~~----------l~~~l~~~~~-----~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~  146 (287)
T PRK09563         82 KALAINAKKGQGVKKILKA----------AKKLLKEKNE-----RRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKI  146 (287)
T ss_pred             eEEEEECCCcccHHHHHHH----------HHHHHHHHHh-----hhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCc
Confidence            7788888 77777766221          1111111110     001112234678999999999999999999999998


Q ss_pred             eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714          165 AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       165 ~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~  201 (322)
                      +.++..+|+|+..+...   .+..+.++||||+..+.
T Consensus       147 ~~~~~~~g~T~~~~~~~---~~~~~~l~DtPGi~~~~  180 (287)
T PRK09563        147 AKTGNRPGVTKAQQWIK---LGKGLELLDTPGILWPK  180 (287)
T ss_pred             cccCCCCCeEEEEEEEE---eCCcEEEEECCCcCCCC
Confidence            89999999999876432   24578999999997654

>cd04177 RSR1 RSR1 subgroup

Probab=99.86  E-value=1e-20  Score=157.11  Aligned_cols=160  Identities=18%  Similarity=0.165  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||++++.+..+....  ..++.......+...  ...+.+|||||...+..      ..   .   
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~---~---   67 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESY--DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA------MR---E---   67 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcchheEEEEEEECCEEEEEEEEeCCCcccchh------hh---H---
Confidence            68999999999999999999877643221  112211212222222  35678999999875432      11   1   


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ..+..++++++|+|++++.+...  ...|...+.. ....+.|+++|+||+|+........+....+...++..+++++|
T Consensus        68 ~~~~~~~~~vlv~~~~~~~s~~~--~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S  145 (168)
T cd04177          68 LYIKSGQGFLLVYSVTSEASLNE--LGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETS  145 (168)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHH--HHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEee
Confidence            23466799999999976433322  3333333322 12346889999999999765433333344444445545799999


Q ss_pred             cCCCCCHHHHHHHHHHHhh
Q 020714          297 GLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~  315 (322)
                      |++|.|++++|+++...+.
T Consensus       146 A~~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         146 ARKRTNVDEVFIDLVRQII  164 (168)
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999987654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd00154 Rab Rab family

Probab=99.86  E-value=9.5e-21  Score=154.47  Aligned_cols=157  Identities=20%  Similarity=0.229  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ++|+++|.+|||||||+|++.+...... ....+.+..............+.+||+||...+.            .....
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------------~~~~~   68 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR------------SITPS   68 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH------------HHHHH
Confidence            4799999999999999999998776543 2222222222221121234678899999975321            12223


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .+..+|++++|+|+++..  ....+..|+..+.....+..|+++|+||+|+........+....+....+. +++++||+
T Consensus        69 ~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~  145 (159)
T cd00154          69 YYRGAHGAILVYDITNRE--SFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGL-LFFETSAK  145 (159)
T ss_pred             HhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCC-eEEEEecC
Confidence            467789999999996532  223455567666655445688999999999973333333444444444444 69999999


Q ss_pred             CCCCHHHHHHHHH
Q 020714          299 KGAGLKALTQYLM  311 (322)
Q Consensus       299 ~g~gi~el~~~i~  311 (322)
                      +|.|+++++++|.
T Consensus       146 ~~~~i~~~~~~i~  158 (159)
T cd00154         146 TGENVEELFQSLA  158 (159)
T ss_pred             CCCCHHHHHHHHh
Confidence            9999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.86  E-value=1.1e-20  Score=159.58  Aligned_cols=163  Identities=14%  Similarity=0.107  Sum_probs=107.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ++|+++|.+|||||||++++.+..+....  ..+............   ...+.+|||||...+..          .  .
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~----------~--~   66 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEY--VPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR----------L--R   66 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCC--CCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH----------H--H
Confidence            47999999999999999999987654221  111111111112222   34678999999764311          1  1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh----hHHHHHHHHHhcCCCCCcE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----KDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~  292 (322)
                      ...+..+|++++|+|+++..+..+. ...|+..+... .++.|+++|+||+|+....    .........+....+..++
T Consensus        67 ~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~  144 (187)
T cd04132          67 PLSYPDVDVLLICYAVDNPTSLDNV-EDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAY  144 (187)
T ss_pred             HHhCCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEE
Confidence            1246789999999999764433221 12355444322 2468899999999996532    1223344555555555469


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      +++||++|.|++++|+.+.+.+....
T Consensus       145 ~e~Sa~~~~~v~~~f~~l~~~~~~~~  170 (187)
T cd04132         145 LECSAKTMENVEEVFDTAIEEALKKE  170 (187)
T ss_pred             EEccCCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999999887753

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=99.86  E-value=2.4e-21  Score=168.94  Aligned_cols=172  Identities=17%  Similarity=0.147  Sum_probs=126.9

Q ss_pred             ccccccCCCCCCCchHHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCC
Q 020714           10 LAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQ   72 (322)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~   72 (322)
                      +.+..+++...--..||.|||++|.++...  .++++|++||++|||||+++ |                ||.||+++..
T Consensus        13 ~~~~~~~~~~~~~~~wfpgHmakalr~i~~--~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~   90 (335)
T KOG2485|consen   13 AGDAVIFAKYNMPRRWFPGHMAKALRAIQN--RLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKE   90 (335)
T ss_pred             hhhcccccccCCccccCchHHHHHHHHHHh--hcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchh
Confidence            344555666666789999999999998877  88899999999999999999 6                7999999888


Q ss_pred             hhhHHHHHHhhCCeE-EEeecccc---chhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCC
Q 020714           73 EPTWDEKYRERTDRI-VFGEEAQK---GKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAP  148 (322)
Q Consensus        73 ~~~w~~~~~~~~~~i-~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~  148 (322)
                      .+....+++.+...- ++.+....   +...++              .++....    ++....-......++++|+|.|
T Consensus        91 ~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~--------------~il~~~~----~~l~r~irt~~~~~~vmVvGvP  152 (335)
T KOG2485|consen   91 QKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLL--------------KILTILS----EELVRFIRTLNSEYNVMVVGVP  152 (335)
T ss_pred             hhHHHHHHHhhcccchhhhhhhhhhhhccccHH--------------HHHHHHH----HHHHHhhcccCCceeEEEEcCC
Confidence            888999998775543 33333222   233331              1111111    1111111234568999999999


Q ss_pred             CCchhHHHHHHhC-----CeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714          149 NAGKSSIINYMVG-----TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       149 ~vGKStlin~l~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~  201 (322)
                      |||||||||++..     .+.+.++..+|+|+.....+.......++++||||+..+.
T Consensus       153 NVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~  210 (335)
T KOG2485|consen  153 NVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS  210 (335)
T ss_pred             CCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence            9999999998753     3677899999999998887766778889999999998763

>cd04111 Rab39 Rab39 subfamily

Probab=99.86  E-value=1.8e-20  Score=161.55  Aligned_cols=163  Identities=19%  Similarity=0.234  Sum_probs=110.5

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-C--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-A--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      .+||+++|.+|||||||++++.+..+..... +..+.+.....+.. .  ...+.+|||||...+..            .
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~------------~   68 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS------------I   68 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHH------------H
Confidence            3789999999999999999999876543322 22222222211222 2  34688999999753211            1


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ....+..+|++++|||+++..+.  ..+..|+..+.... ....|+++|+||+|+........+....++...+. ++++
T Consensus        69 ~~~~~~~~d~iilv~D~~~~~Sf--~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e  145 (211)
T cd04111          69 TRSYYRNSVGVLLVFDITNRESF--EHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM-KYIE  145 (211)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCC-EEEE
Confidence            12346788999999999765333  24556666654322 22467899999999976544444445555555564 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.|++++|++|.+.+.++
T Consensus       146 ~Sak~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         146 TSARTGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988764

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>COG1161 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=1.2e-21  Score=178.54  Aligned_cols=161  Identities=25%  Similarity=0.365  Sum_probs=124.6

Q ss_pred             CchHHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCChhhHHHHHHhhC
Q 020714           22 LNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQEPTWDEKYRERT   84 (322)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~~~~w~~~~~~~~   84 (322)
                      ..+|+.+||.++..++.+  ..+.+|+|+++.|||+|..+ +                ||+||+++...+.|.++|.+..
T Consensus        13 ~i~~~~g~~~k~~~~~~~--~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~   90 (322)
T COG1161          13 KIQWFPGHMKKAKRQLKE--VLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEE   90 (322)
T ss_pred             cccCCCCchHHHHHHHHH--hcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence            467889999999888877  77789999999999999999 5                7999999999999999999985


Q ss_pred             -CeEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714           85 -DRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus        85 -~~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                       ...++.++ ++.+...+.+          ....+....++...     .+.......+++++|.||||||||||+|.++
T Consensus        91 ~~~~~~v~~~~~~~~~~i~~----------~~~~~~~~~i~~~~-----~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k  155 (322)
T COG1161          91 GIKPIFVSAKSRQGGKKIRK----------ALEKLSEEKIKRLK-----KKGLLKRKIRVGVVGYPNVGKSTLINRLLGK  155 (322)
T ss_pred             CCccEEEEeecccCccchHH----------HHHHHHHHHHHHHh-----hcCCCccceEEEEEcCCCCcHHHHHHHHhcc
Confidence             44577777 6666665511          11111111111100     1223455688999999999999999999999


Q ss_pred             eeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714          163 KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS  202 (322)
Q Consensus       163 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~  202 (322)
                      ..+.++..||+|...+....   ...+.|+||||+..+..
T Consensus       156 ~~~~~s~~PG~Tk~~q~i~~---~~~i~LlDtPGii~~~~  192 (322)
T COG1161         156 KVAKTSNRPGTTKGIQWIKL---DDGIYLLDTPGIIPPKF  192 (322)
T ss_pred             cceeeCCCCceecceEEEEc---CCCeEEecCCCcCCCCc
Confidence            99999999999999887543   34589999999997654

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.86  E-value=1.5e-20  Score=156.55  Aligned_cols=159  Identities=15%  Similarity=0.116  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +|+++|.+|||||||++++.++.+... .+..+  .......+...  ...+.+|||||...+..            ...
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------~~~   67 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIG--VDFEMERFEILGVPFSLQLWDTAGQERFKC------------IAS   67 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEeCCChHHHHh------------hHH
Confidence            689999999999999999998765321 12222  12111112222  34689999999864311            112


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC-CCCcEEEEEeCCCCCCChh--HHHHHHHHHhcCCCCCcEEE
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~-~~~p~ivV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ..+..+|++++|+|+++..+.  ..+..|+..+..... ...|+++|+||+|+.....  ..++....+....+. ++++
T Consensus        68 ~~~~~ad~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~e  144 (170)
T cd04108          68 TYYRGAQAIIIVFDLTDVASL--EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWS  144 (170)
T ss_pred             HHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC-eEEE
Confidence            347889999999999653222  345567766543322 2467999999999965422  123334444444454 5899


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +||++|.|++++|+.|.+.+.+
T Consensus       145 ~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         145 VSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998865

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00157 Rho Rho (Ras homology) family

Probab=99.86  E-value=8.7e-21  Score=157.52  Aligned_cols=157  Identities=15%  Similarity=0.186  Sum_probs=103.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe--eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||+++|++........  .+..........  .....+.+|||||+..+.....            
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~------------   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV--PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRP------------   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeeeEEEEEECCEEEEEEEEeCCCcccccccch------------
Confidence            479999999999999999999876532111  111111111122  2245689999999875422110            


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH-----------HHHHHHHHhcC
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-----------LLKVAEQFKHL  286 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~-----------~~~~~~~~~~~  286 (322)
                      ..+..+|++++|+|++++.+... ....|+..+.... ++.|+++|+||+|+......           .......+...
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~  144 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFEN-VKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE  144 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence            23467899999999976433222 2233454444322 36889999999999765432           12334445555


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~  312 (322)
                      .+..+++++||++|.|+++++++|.+
T Consensus       145 ~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         145 IGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence            55557999999999999999999876

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04154 Arl2 Arl2 subfamily

Probab=99.86  E-value=2e-20  Score=156.17  Aligned_cols=157  Identities=18%  Similarity=0.229  Sum_probs=102.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...++|+++|.+|||||||++++.+..+....+..+...    ..+...+..+.+|||||...+.         .   ..
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~l~l~D~~G~~~~~---------~---~~   75 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI----KTLEYEGYKLNIWDVGGQKTLR---------P---YW   75 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce----EEEEECCEEEEEEECCCCHHHH---------H---HH
Confidence            356889999999999999999999875544333333221    1233456788999999975321         1   11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc---CCCCCcE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPGYERI  292 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~  292 (322)
                      ...+..+|++++|+|+++..+.  .....++..+. .....+.|+++|+||+|+.... ..++....+..   .....++
T Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~  152 (173)
T cd04154          76 RNYFESTDALIWVVDSSDRLRL--DDCKRELKELLQEERLAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRI  152 (173)
T ss_pred             HHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEE
Confidence            2346789999999999764322  22333444432 2233468899999999997542 22222222211   0122369


Q ss_pred             EEeecCCCCCHHHHHHHHHH
Q 020714          293 FMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~  312 (322)
                      +++||++|.|+++++++|..
T Consensus       153 ~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         153 QPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             EeccCCCCcCHHHHHHHHhc
Confidence            99999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=1.1e-20  Score=173.49  Aligned_cols=180  Identities=23%  Similarity=0.274  Sum_probs=138.9

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....++.|+++|.||||||||+|+|.+.+...+++.+|||++.....+...|.++.|.||+|+.+...   ......+++
T Consensus       264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~---~~iE~~gI~  340 (531)
T KOG1191|consen  264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESN---DGIEALGIE  340 (531)
T ss_pred             HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccC---ChhHHHhHH
Confidence            45567999999999999999999999999999999999999999999999999999999999987221   233456788


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCC------CCcEEEEEeCCCCCCCh-hHHHHHHHHHh--c
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP------KQKRVLCMNKVDLVTKK-KDLLKVAEQFK--H  285 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~------~~p~ivV~NK~Dl~~~~-~~~~~~~~~~~--~  285 (322)
                      ++...+..+|++++|+|+....++++..+.+.+...+.....      ..|++++.||+|+...- +.......+..  .
T Consensus       341 rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~  420 (531)
T KOG1191|consen  341 RARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEG  420 (531)
T ss_pred             HHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccccc
Confidence            888999999999999999666677776666777666543222      37899999999998751 11110011111  1


Q ss_pred             CCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          286 LPGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       286 ~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ...+..+.++||++++|++.|.+.|.+.+...
T Consensus       421 ~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  421 RSVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             CcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence            11233456699999999999999998877653

>cd04158 ARD1 ARD1 subfamily

Probab=99.85  E-value=1.9e-20  Score=155.75  Aligned_cols=158  Identities=15%  Similarity=0.091  Sum_probs=103.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|.+|||||||++++.+..+..    ...|...........+..+.+|||||...+..            .....+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~----~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~------------~~~~~~   64 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ----PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRP------------LWKHYY   64 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC----cCCcCceeEEEEEECCEEEEEEECCCChhcch------------HHHHHh
Confidence            48899999999999999999875432    12222222222445677899999999864321            122346


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCC-----CCcEEE
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG-----YERIFM  294 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~  294 (322)
                      ..+|++++|+|.+++.+.  .....++..+... ...+.|+++|+||+|+... ...++ ...+.....     ...+++
T Consensus        65 ~~ad~ii~V~D~s~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~  140 (169)
T cd04158          65 LNTQAVVFVVDSSHRDRV--SEAHSELAKLLTEKELRDALLLIFANKQDVAGA-LSVEE-MTELLSLHKLCCGRSWYIQG  140 (169)
T ss_pred             ccCCEEEEEEeCCcHHHH--HHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-CCHHH-HHHHhCCccccCCCcEEEEe
Confidence            788999999999764322  2344555555432 2335789999999999643 11222 222222221     114788


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhcC
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      |||++|.||+++|+||.+.+....
T Consensus       141 ~Sa~~g~gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         141 CDARSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             CcCCCCCCHHHHHHHHHHHHhhcc
Confidence            999999999999999998877653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.85  E-value=5.6e-21  Score=171.17  Aligned_cols=158  Identities=24%  Similarity=0.347  Sum_probs=119.6

Q ss_pred             hHHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCChhhHHHHHHhhCCe
Q 020714           24 PLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQEPTWDEKYRERTDR   86 (322)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~~~~w~~~~~~~~~~   86 (322)
                      +||.|||.++..+...  ..+.+|+++++.|++.|... +                ||+|+++++....|..++...+..
T Consensus         2 ~WfpgHm~k~~~~~~~--~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~   79 (276)
T TIGR03596         2 QWFPGHMAKARREIKE--KLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIK   79 (276)
T ss_pred             ccChHHHHHHHHHHHH--HHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCe
Confidence            6999999999999877  67789999999999999887 4                799998877678899999776667


Q ss_pred             EEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeee
Q 020714           87 IVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA  165 (322)
Q Consensus        87 i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~  165 (322)
                      +++.++ ++.+...+.+..          ...+....     .....+......++++++|.||||||||+|+|.+...+
T Consensus        80 vi~iSa~~~~gi~~L~~~i----------~~~~~~~~-----~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~  144 (276)
T TIGR03596        80 ALAINAKKGKGVKKIIKAA----------KKLLKEKN-----EKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVA  144 (276)
T ss_pred             EEEEECCCcccHHHHHHHH----------HHHHHHhh-----hhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCcc
Confidence            788888 777777662211          11111110     00011122345789999999999999999999999888


Q ss_pred             eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714          166 AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       166 ~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~  201 (322)
                      .++..+|+|+..+...+   +..+.++||||+..+.
T Consensus       145 ~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~  177 (276)
T TIGR03596       145 KVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPK  177 (276)
T ss_pred             ccCCCCCeecceEEEEe---CCCEEEEECCCcccCC
Confidence            89999999988764332   3468999999997654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PLN03108 Rab family protein; Provisional

Probab=99.85  E-value=1.8e-20  Score=161.46  Aligned_cols=163  Identities=18%  Similarity=0.174  Sum_probs=110.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ..++|+++|++|||||||++++++..+.... ...+.+...  ..+...+  ..+.+|||||...+..            
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~--~~i~~~~~~i~l~l~Dt~G~~~~~~------------   70 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMITIDNKPIKLQIWDTAGQESFRS------------   70 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEE--EEEEECCEEEEEEEEeCCCcHHHHH------------
Confidence            3589999999999999999999987654321 222222211  1222233  4578999999763211            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      .....+..+|++++|+|+++..+.  ..+..|+..+.....+..|+++|+||+|+.............+...++. ++++
T Consensus        71 ~~~~~~~~ad~~vlv~D~~~~~s~--~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e  147 (210)
T PLN03108         71 ITRSYYRGAAGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFME  147 (210)
T ss_pred             HHHHHhccCCEEEEEEECCcHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCC-EEEE
Confidence            122345778999999999764333  2344555554433334688999999999976543333444555555555 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.|++++|+++.+.+.++
T Consensus       148 ~Sa~~~~~v~e~f~~l~~~~~~~  170 (210)
T PLN03108        148 ASAKTAQNVEEAFIKTAAKIYKK  170 (210)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999888753

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.85  E-value=8e-21  Score=156.36  Aligned_cols=152  Identities=13%  Similarity=0.107  Sum_probs=102.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||+.++....+..... +  +.......+..++  ..+.+|||+|....                 
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~-~--~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----------------   60 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLES-P--EGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----------------   60 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCC-C--CccceEEEEEECCEEEEEEEEECCCCCch-----------------
Confidence            479999999999999999987765443221 1  1111112233344  45789999998521                 


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCC--ChhHHHHHHHHHhcCCCCCcEEE
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVT--KKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ..+..+|++++|||++++.+.+.  +..|+..+... ..++.|+++|+||+|+..  .+.........+++..+...+++
T Consensus        61 ~~~~~~~~~ilv~d~~~~~sf~~--~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e  138 (158)
T cd04103          61 QFASWVDAVIFVFSLENEASFQT--VYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYE  138 (158)
T ss_pred             hHHhcCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEE
Confidence            12356799999999987655544  33455555433 234678999999999853  23344444555554443336999


Q ss_pred             eecCCCCCHHHHHHHHHHH
Q 020714          295 TSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~  313 (322)
                      |||++|.||+++|+.+.+.
T Consensus       139 ~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         139 TCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             EecCCCCCHHHHHHHHHhh
Confidence            9999999999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.85  E-value=1.7e-20  Score=154.48  Aligned_cols=160  Identities=18%  Similarity=0.124  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|++|||||||+++++...+..  ...+++..........+  ...+.+|||||...+..            ...
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------~~~   66 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA------------IRD   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCcc--ccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH------------HHH
Confidence            479999999999999999998765432  12222222222222233  34688999999764311            111


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ..+..+|++++++|+++..+.  .....+...+... ...+.|+++|+||+|+.............+....+. +++++|
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S  143 (164)
T cd04139          67 NYHRSGEGFLLVFSITDMESF--TATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGV-PYVETS  143 (164)
T ss_pred             HHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEee
Confidence            345778999999999654322  1233333333322 134688999999999976322222222233333344 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|.|+++++++|.+.+.+
T Consensus       144 a~~~~gi~~l~~~l~~~~~~  163 (164)
T cd04139         144 AKTRQNVEKAFYDLVREIRQ  163 (164)
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999987753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.85  E-value=4.4e-21  Score=151.03  Aligned_cols=165  Identities=15%  Similarity=0.150  Sum_probs=124.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCC-CCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ...+||+++|.+|||||||+-++....+....+. .|+........+.....++.||||+|++.|...-+          
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTp----------   78 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTP----------   78 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCH----------
Confidence            3569999999999999999999998776543332 33333322222222345678999999987754322          


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                        .+++.|.++|+|+|++.+.+...  +..|++++... ..+++-.++|+||+|....+.+..++...|+..+++- +++
T Consensus        79 --SyyRgaqGiIlVYDVT~Rdtf~k--Ld~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L-FiE  153 (209)
T KOG0080|consen   79 --SYYRGAQGIILVYDVTSRDTFVK--LDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCL-FIE  153 (209)
T ss_pred             --hHhccCceeEEEEEccchhhHHh--HHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcE-EEE
Confidence              46789999999999987655543  45677777654 3345667899999998776777777888888888875 899


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +||++.+|++..|+.++..+.+
T Consensus       154 ~SAkt~~~V~~~FeelveKIi~  175 (209)
T KOG0080|consen  154 CSAKTRENVQCCFEELVEKIIE  175 (209)
T ss_pred             cchhhhccHHHHHHHHHHHHhc
Confidence            9999999999999999988865

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.85  E-value=2.5e-20  Score=153.59  Aligned_cols=154  Identities=16%  Similarity=0.135  Sum_probs=97.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      +||+++|.+|||||||++++..+.+....+..+..  .  .........+.+|||||+..+.            ......
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~--~--~~~~~~~~~~~l~D~~G~~~~~------------~~~~~~   64 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--V--ETVEYKNISFTVWDVGGQDKIR------------PLWRHY   64 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcc--e--EEEEECCEEEEEEECCCCHhHH------------HHHHHH
Confidence            47999999999999999999765554322222221  1  1233456789999999985321            111234


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc--C-CCCCcEEEe
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--L-PGYERIFMT  295 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~--~-~~~~~~~~i  295 (322)
                      +..+|++++|+|+++..+.  .....++..+. .......|+++|+||+|+..... ..+....+..  . .....++++
T Consensus        65 ~~~ad~~i~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~  141 (159)
T cd04150          65 FQNTQGLIFVVDSNDRERI--GEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQAT  141 (159)
T ss_pred             hcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEEe
Confidence            7889999999999764322  22334343332 22223578999999999965321 2222222211  1 111246799


Q ss_pred             ecCCCCCHHHHHHHHHH
Q 020714          296 SGLKGAGLKALTQYLME  312 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~  312 (322)
                      ||++|.|++++|+||.+
T Consensus       142 Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         142 CATSGDGLYEGLDWLSN  158 (159)
T ss_pred             eCCCCCCHHHHHHHHhc
Confidence            99999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.85  E-value=2.7e-20  Score=153.64  Aligned_cols=159  Identities=21%  Similarity=0.280  Sum_probs=102.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCC--eeee-ecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGT--KVAA-VSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~--~~~~-~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ++|+++|++|||||||++++...  .+.. .....|........... .....+.+|||||...+.         ...  
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~--   69 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS---------DMV--   69 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH---------HHH--
Confidence            47999999999999999999864  2221 11111111111111111 223678999999975321         111  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                       ...+..+|++++|+|+++..+.  ..+..|+..+.... .+.|+++|+||+|+.............+....+. +++++
T Consensus        70 -~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  144 (164)
T cd04101          70 -SNYWESPSVFILVYDVSNKASF--ENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL-KFFKT  144 (164)
T ss_pred             -HHHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEE
Confidence             1345788999999999764322  23456666655432 4578999999999976543222223334444444 59999


Q ss_pred             ecCCCCCHHHHHHHHHHHh
Q 020714          296 SGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l  314 (322)
                      ||++|.|+++++++|.+.+
T Consensus       145 Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         145 SALRGVGYEEPFESLARAF  163 (164)
T ss_pred             eCCCCCChHHHHHHHHHHh
Confidence            9999999999999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=3.5e-20  Score=185.90  Aligned_cols=163  Identities=28%  Similarity=0.375  Sum_probs=123.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ..+|+++|.||||||||+|+|++.+...+...+|+|++.........+..+.+|||||+......    ........+..
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~----~~~~~~~~~~~  350 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEG----IDSAIASQAQI  350 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCcc----HHHHHHHHHHH
Confidence            46899999999999999999999888888889999998877766677888999999998743221    12233445556


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .+..+|++++|+|++.+.+..+..+..++..      .++|+++|+||+|+.......    ..+.. .+...++++||+
T Consensus       351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~------~~~pvIlV~NK~D~~~~~~~~----~~~~~-lg~~~~~~iSA~  419 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRR------AGKPVVLAVNKIDDQASEYDA----AEFWK-LGLGEPYPISAM  419 (712)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHh------cCCCEEEEEECcccccchhhH----HHHHH-cCCCCeEEEECC
Confidence            6788999999999987666655555555543      257899999999986532211    22222 234457899999


Q ss_pred             CCCCHHHHHHHHHHHhhh
Q 020714          299 KGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~~  316 (322)
                      +|.||++++++|.+.+..
T Consensus       420 ~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        420 HGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCCchHHHHHHHHhccc
Confidence            999999999999998754

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.85  E-value=1.1e-20  Score=157.51  Aligned_cols=163  Identities=20%  Similarity=0.241  Sum_probs=107.7

Q ss_pred             EEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhccc
Q 020714          144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL  222 (322)
Q Consensus       144 v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (322)
                      ++|.+|||||||+|+|.+... .++..+++|........... +..+.+|||||+.......  ..   .....+..+..
T Consensus         1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~--~~---~~~~~~~~~~~   74 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG--RG---LGNQFLAHIRR   74 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC--CC---ccHHHHHHHhc
Confidence            579999999999999999875 45666777777666555566 8899999999985322111  00   11123345667


Q ss_pred             ccEEEEEEeCCCCC----CCcHHHHHHHHHHhcccC-------CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCc
Q 020714          223 FEVLMVVFDVHRHL----TSPDSRVIRLIERMGKQA-------PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER  291 (322)
Q Consensus       223 ad~ii~v~D~s~~~----~~~~~~~~~~l~~~~~~~-------~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  291 (322)
                      +|++++|+|+++..    .........+...+....       ....|+++|+||+|+................. ...+
T Consensus        75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~  153 (176)
T cd01881          75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALE-EGAE  153 (176)
T ss_pred             cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcC-CCCC
Confidence            89999999997652    122223333333333221       13578999999999976543322211222222 3346


Q ss_pred             EEEeecCCCCCHHHHHHHHHHH
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      ++++||++|.|++++++++...
T Consensus       154 ~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         154 VVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EEEEehhhhcCHHHHHHHHHhh
Confidence            9999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01863 Rab18 Rab18 subfamily

Probab=99.85  E-value=2.4e-20  Score=153.47  Aligned_cols=158  Identities=16%  Similarity=0.178  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ++|+++|++|||||||+|++.+..... ..+..+.+..............+.+|||||...+..            ....
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------------~~~~   68 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT------------LTSS   68 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh------------hhHH
Confidence            479999999999999999999876543 333333333222221222235689999999754311            1112


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      .++.+|++++|+|+++..+..  .+..|+..+... ...+.|+++|+||+|+........ ....+....++ +++++||
T Consensus        69 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~-~~~~~~~~~~~-~~~~~Sa  144 (161)
T cd01863          69 YYRGAQGVILVYDVTRRDTFT--NLETWLNELETYSTNNDIVKMLVGNKIDKENREVTRE-EGLKFARKHNM-LFIETSA  144 (161)
T ss_pred             HhCCCCEEEEEEECCCHHHHH--hHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHH-HHHHHHHHcCC-EEEEEec
Confidence            357889999999997644332  344455544332 234688999999999974432222 23334444455 5999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 020714          298 LKGAGLKALTQYLMEQ  313 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~  313 (322)
                      ++|.|++++++++.+.
T Consensus       145 ~~~~gi~~~~~~~~~~  160 (161)
T cd01863         145 KTRDGVQQAFEELVEK  160 (161)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.85  E-value=9.1e-21  Score=156.85  Aligned_cols=159  Identities=14%  Similarity=0.213  Sum_probs=100.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +|+++|.+|||||||+++++...+..  ....++..........++  ..+.+|||||...+..    .       ....
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~-------~~~~   67 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIG--EYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT----E-------QLER   67 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCcccc--ccCCChHHhceEEEEECCEEEEEEEEECCCCccccc----c-------hHHH
Confidence            48999999999999999998765432  112222111112222333  3578999999874211    0       1112


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC--CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~--~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      .+..+|++++|+|+++..+..  .+..|+..+....  ..+.|+++|+||+|+.............++...+. +++++|
T Consensus        68 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S  144 (165)
T cd04146          68 SIRWADGFVLVYSITDRSSFD--EISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC-LFFEVS  144 (165)
T ss_pred             HHHhCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCC-EEEEeC
Confidence            356789999999997654332  2333433333221  33688999999999865433233334444444454 699999


Q ss_pred             cCCCC-CHHHHHHHHHHHhh
Q 020714          297 GLKGA-GLKALTQYLMEQFK  315 (322)
Q Consensus       297 a~~g~-gi~el~~~i~~~l~  315 (322)
                      |++|. |++++|+.|.+.+.
T Consensus       145 a~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         145 AAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             CCCCchhHHHHHHHHHHHHh
Confidence            99994 99999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.85  E-value=3.2e-20  Score=156.18  Aligned_cols=159  Identities=15%  Similarity=0.155  Sum_probs=104.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...++|+++|.+|||||||++++....+....++.+...    ......+..+.+|||||...+             ...
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~----~~~~~~~~~~~i~D~~Gq~~~-------------~~~   77 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV----ETVEYKNISFTVWDVGGQDKI-------------RPL   77 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeE----EEEEECCEEEEEEECCCCHHH-------------HHH
Confidence            345899999999999999999998765543323222221    123456778999999997532             112


Q ss_pred             -HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCC----CC
Q 020714          217 -WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG----YE  290 (322)
Q Consensus       217 -~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~----~~  290 (322)
                       ...+..+|++|+|+|+++..+.  .....++..+. ....++.|+++|+||+|+..... .++....+ ....    ..
T Consensus        78 ~~~~~~~a~~iI~V~D~s~~~s~--~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~l-~l~~~~~~~~  153 (181)
T PLN00223         78 WRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKL-GLHSLRQRHW  153 (181)
T ss_pred             HHHHhccCCEEEEEEeCCcHHHH--HHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC-HHHHHHHh-CccccCCCce
Confidence             2346889999999999764322  22333444432 22334688999999999976432 22222222 1111    11


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      .++++||++|+|++++++||.+.+..
T Consensus       154 ~~~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        154 YIQSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            35689999999999999999988765

>cd04118 Rab24 Rab24 subfamily

Probab=99.85  E-value=2.5e-20  Score=158.29  Aligned_cols=160  Identities=19%  Similarity=0.228  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeee--ecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      +||+++|.+|||||||++++.+..+..  ..+..+.+...  ..+...+  ..+.+|||||...+..          .. 
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~l~i~D~~G~~~~~~----------~~-   67 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVA--KRMVVGERVVTLGIWDTAGSERYEA----------MS-   67 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEE--EEEEECCEEEEEEEEECCCchhhhh----------hh-
Confidence            479999999999999999999876542  22222221111  1222333  3567999999864321          11 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh----hHHHHHHHHHhcCCCCCc
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----KDLLKVAEQFKHLPGYER  291 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~  291 (322)
                       ...+..+|++++|||+++..+.  ..+..|+..+... .++.|+++|+||+|+....    .........+....+. +
T Consensus        68 -~~~~~~~d~iilv~d~~~~~s~--~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-~  142 (193)
T cd04118          68 -RIYYRGAKAAIVCYDLTDSSSF--ERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA-Q  142 (193)
T ss_pred             -HhhcCCCCEEEEEEECCCHHHH--HHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCC-e
Confidence             1235688999999999764322  2344566665433 2367899999999986432    1111223344444444 5


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++++||++|.|+++++++|.+.+.++
T Consensus       143 ~~~~Sa~~~~gv~~l~~~i~~~~~~~  168 (193)
T cd04118         143 HFETSSKTGQNVDELFQKVAEDFVSR  168 (193)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            89999999999999999999888653

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.85  E-value=2.3e-20  Score=154.56  Aligned_cols=157  Identities=18%  Similarity=0.183  Sum_probs=99.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeee---ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAA---VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +|+++|.+|+|||||+|+|.+.....   ......+|.......+...+..+.+|||||+..+.            ....
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------~~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR------------SLWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH------------HHHH
Confidence            48899999999999999998653221   11122233333333344567889999999986321            1112


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC---C--CCCc
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---P--GYER  291 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~---~--~~~~  291 (322)
                      ..+..+|++++|+|+++..+  ......++..+.. ....+.|+++|+||+|+.... ...+....+...   .  ...+
T Consensus        69 ~~~~~~~~~v~vvd~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~  145 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRER--FEESKSALEKVLRNEALEGVPLLILANKQDLPDAL-SVEEIKEVFQDKAEEIGRRDCL  145 (167)
T ss_pred             HHhCCCCEEEEEEECchHHH--HHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC-CHHHHHHHhccccccccCCceE
Confidence            34678899999999965322  2233344444332 223468899999999986642 122222222221   1  1236


Q ss_pred             EEEeecCCCCCHHHHHHHHHH
Q 020714          292 IFMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~  312 (322)
                      ++++||++|.|++++++||.+
T Consensus       146 ~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         146 VLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EEEeeCCCCcCHHHHHHHHhc
Confidence            999999999999999999964

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.85  E-value=3.3e-20  Score=155.32  Aligned_cols=158  Identities=18%  Similarity=0.183  Sum_probs=101.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ..++|+++|.+|||||||++++..+.+....++.+  ...  ......+..+.+|||||...+             ...+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~--~~~--~~~~~~~~~l~l~D~~G~~~~-------------~~~~   74 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIG--FNV--ETVTYKNISFTVWDVGGQDKI-------------RPLW   74 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccc--cce--EEEEECCEEEEEEECCCChhh-------------HHHH
Confidence            46899999999999999999997655432222112  111  123345678899999997532             1122


Q ss_pred             -hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh--cCC-CCCcE
Q 020714          218 -SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HLP-GYERI  292 (322)
Q Consensus       218 -~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~--~~~-~~~~~  292 (322)
                       ..+..+|++++|+|++++.+.  .....++..+. .....+.|+++|+||+|+..... ..+....+.  ... ....+
T Consensus        75 ~~~~~~ad~ii~v~D~t~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~  151 (175)
T smart00177       75 RHYYTNTQGLIFVVDSNDRDRI--DEAREELHRMLNEDELRDAVILVFANKQDLPDAMK-AAEITEKLGLHSIRDRNWYI  151 (175)
T ss_pred             HHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC-HHHHHHHhCccccCCCcEEE
Confidence             336889999999999764322  23334444443 22234678999999999965421 112222221  111 11136


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhh
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +++||++|.|++++++||.+.+.
T Consensus       152 ~~~Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      152 QPTCATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHhc
Confidence            78999999999999999988753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG2484 consensus GTPase [General function prediction only]

Probab=99.85  E-value=1e-21  Score=175.96  Aligned_cols=161  Identities=22%  Similarity=0.229  Sum_probs=124.2

Q ss_pred             HHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhh
Q 020714           25 LFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRER   83 (322)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~   83 (322)
                      ...-.|++.-..+.+     .+|||+||.|||+|..+ +                    ||+||++++.++.|+.|++..
T Consensus       131 ~s~kaY~ke~rkvve-----~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~  205 (435)
T KOG2484|consen  131 ESKKAYDKEFRKVVE-----ASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRRE  205 (435)
T ss_pred             hhHHHHHHHHHHHHh-----hhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhh
Confidence            333445555555444     89999999999999999 5                    799999999999999999999


Q ss_pred             CCeEEEeeccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714           84 TDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus        84 ~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      +++++|.++++.+..+.    ........+..+.+-..+....     .....++.++++|+|+|||||||+||+|..++
T Consensus       206 ~ptv~fkast~~~~~~~----~~~~~s~c~gae~l~~~lgny~-----~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k  276 (435)
T KOG2484|consen  206 GPTVAFKASTQMQNSNS----KNLQSSVCFGAETLMKVLGNYC-----RKGELKTSIRVGIIGYPNVGKSSVINSLKRRK  276 (435)
T ss_pred             CCcceeecccccccccc----cccccchhhhHHHHHHHhcCcc-----cccccCcceEeeeecCCCCChhHHHHHHHHhc
Confidence            99999999977766642    0111113344444444443322     22346788999999999999999999999999


Q ss_pred             eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714          164 VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS  202 (322)
Q Consensus       164 ~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~  202 (322)
                      .+.++..||.|+..+..   ..+..+.|+|.||+.....
T Consensus       277 ~C~vg~~pGvT~smqeV---~Ldk~i~llDsPgiv~~~~  312 (435)
T KOG2484|consen  277 ACNVGNVPGVTRSMQEV---KLDKKIRLLDSPGIVPPSI  312 (435)
T ss_pred             cccCCCCccchhhhhhe---eccCCceeccCCceeecCC
Confidence            99999999999987764   4467889999999986554

>PRK04213 GTP-binding protein; Provisional

Probab=99.85  E-value=8.2e-20  Score=156.19  Aligned_cols=171  Identities=18%  Similarity=0.293  Sum_probs=104.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH--
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES--  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--  215 (322)
                      ..++|+++|.+|||||||+|+|.+..+ .++..+++|......  ..  ..+.+|||||+.... ..+.. ....++.  
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~~--~~--~~~~l~Dt~G~~~~~-~~~~~-~~~~~~~~~   80 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNHY--DW--GDFILTDLPGFGFMS-GVPKE-VQEKIKDEI   80 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceEE--ee--cceEEEeCCcccccc-ccCHH-HHHHHHHHH
Confidence            457899999999999999999998764 355667777664432  22  268999999974322 11111 1122222  


Q ss_pred             --HHh-hcccccEEEEEEeCCCCCCCcH--------HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHHHHHH
Q 020714          216 --AWS-AVNLFEVLMVVFDVHRHLTSPD--------SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQF  283 (322)
Q Consensus       216 --~~~-~~~~ad~ii~v~D~s~~~~~~~--------~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~~  283 (322)
                        .+. ....++++++|+|.+......+        ..-..++..+..   .+.|+++|+||+|+..... ...++...+
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~  157 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERL  157 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHh
Confidence              222 3456789999999864321100        000112222222   2578999999999975431 222222222


Q ss_pred             hcCCC----CCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          284 KHLPG----YERIFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       284 ~~~~~----~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      .....    ..+++++||++| |+++++++|.+.+.+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence            11000    025899999999 999999999998876543

>cd04148 RGK RGK subfamily

Probab=99.85  E-value=3.2e-20  Score=161.16  Aligned_cols=160  Identities=16%  Similarity=0.180  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeee-eecCCCCc-eeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNT-TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~-~~~~~~~~-t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||++++..+.+. ......+. ........+......+.+|||||....            ...  
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~------------~~~--   66 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW------------TED--   66 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH------------HHh--
Confidence            47999999999999999999766553 22111211 111121122223456889999998610            111  


Q ss_pred             hhcc-cccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          218 SAVN-LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       218 ~~~~-~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ..+. .+|++++|||+++..+..  .+..|+..+... ...+.|+++|+||+|+.....+..+....++..++. +++++
T Consensus        67 ~~~~~~ad~iilV~d~td~~S~~--~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~  143 (221)
T cd04148          67 SCMQYQGDAFVVVYSVTDRSSFE--RASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC-KFIET  143 (221)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCC-eEEEe
Confidence            1223 789999999997754332  233444444322 124688999999999976554444444555555555 59999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      ||++|.||+++|++|.+.+..
T Consensus       144 SA~~~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         144 SAGLQHNVDELLEGIVRQIRL  164 (221)
T ss_pred             cCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999998863

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04114 Rab30 Rab30 subfamily

Probab=99.85  E-value=3.2e-20  Score=153.96  Aligned_cols=161  Identities=16%  Similarity=0.177  Sum_probs=106.1

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..++|+++|.+|||||||++++.+..+... ..+..+.+.....+...+  ..+.+|||||...+..            .
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------------~   72 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS------------I   72 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHH------------H
Confidence            358899999999999999999986554321 112122222222233334  4578999999753211            1


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ....+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+.............+..... .+++++
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~  149 (169)
T cd04114          73 TQSYYRSANALILTYDITCEESF--RCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLET  149 (169)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEe
Confidence            12346788999999999654322  234456555543333457899999999997654433344445554444 369999


Q ss_pred             ecCCCCCHHHHHHHHHHHh
Q 020714          296 SGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l  314 (322)
                      ||++|.|+++++++|.+.+
T Consensus       150 Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         150 SAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.85  E-value=3.3e-20  Score=163.35  Aligned_cols=160  Identities=21%  Similarity=0.219  Sum_probs=102.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|||||||++++++..+..  ....++.+.....+...+  ..+.||||+|...+..          ...  
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~----------~~~--   66 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA----------MRR--   66 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH----------HHH--
Confidence            479999999999999999998776542  112222222222233334  5678999999864321          111  


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc---------cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCC
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK---------QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG  288 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~---------~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~  288 (322)
                      ..+..+|++|+|||+++..+..  .+..|+..+..         ....+.|+++|+||+|+.....+.......+.....
T Consensus        67 ~~~~~ad~iIlVfdv~~~~Sf~--~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~  144 (247)
T cd04143          67 LSILTGDVFILVFSLDNRESFE--EVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDE  144 (247)
T ss_pred             HHhccCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcC
Confidence            2356789999999997654332  23344433321         123468999999999997533322222333322221


Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          289 YERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       289 ~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      ...++++||++|.|++++|++|.+.+.
T Consensus       145 ~~~~~evSAktg~gI~elf~~L~~~~~  171 (247)
T cd04143         145 NCAYFEVSAKKNSNLDEMFRALFSLAK  171 (247)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence            235999999999999999999998763

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04157 Arl6 Arl6 subfamily

Probab=99.85  E-value=3.2e-20  Score=152.70  Aligned_cols=153  Identities=19%  Similarity=0.246  Sum_probs=97.2

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCee--eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +|+++|.+|||||||++++.+...  ....+..+.+..    .+...+..+.+|||||...+..            ....
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~----~~~~~~~~~~l~Dt~G~~~~~~------------~~~~   64 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE----SFEKGNLSFTAFDMSGQGKYRG------------LWEH   64 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE----EEEECCEEEEEEECCCCHhhHH------------HHHH
Confidence            478999999999999999998642  223333333221    2334567889999999864211            1113


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc---CCCCCcEEEEEeCCCCCCChhHHHHHHHHH--hcCCC-CCcE
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLPG-YERI  292 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~---~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~--~~~~~-~~~~  292 (322)
                      .+..+|++++|+|+++..+.  .....++..+...   ...+.|+++|+||+|+..... ..+....+  ..... ..++
T Consensus        65 ~~~~~d~ii~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~  141 (162)
T cd04157          65 YYKNIQGIIFVIDSSDRLRL--VVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGLENIKDKPWHI  141 (162)
T ss_pred             HHccCCEEEEEEeCCcHHHH--HHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCCccccCceEEE
Confidence            46789999999999764322  1223344443221   123689999999999975422 11211111  11111 1148


Q ss_pred             EEeecCCCCCHHHHHHHHHH
Q 020714          293 FMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~  312 (322)
                      +++||++|.|++++++||.+
T Consensus       142 ~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         142 FASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             EEeeCCCCCchHHHHHHHhc
Confidence            99999999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.85  E-value=3.4e-20  Score=149.53  Aligned_cols=140  Identities=21%  Similarity=0.286  Sum_probs=94.0

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|.+|||||||+|++.+.....    . .|..     ....+   .+|||||...        .....+......+
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~~----~-~t~~-----~~~~~---~~iDt~G~~~--------~~~~~~~~~~~~~   60 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEILY----K-KTQA-----VEYND---GAIDTPGEYV--------ENRRLYSALIVTA   60 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcccc----c-ccee-----EEEcC---eeecCchhhh--------hhHHHHHHHHHHh
Confidence            79999999999999999999875421    1 1111     11222   6899999731        1112244444568


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      ..+|++++|+|++++.+....   .+....      ..|+++|+||+|+...... .+....+.+..+..+++++||++|
T Consensus        61 ~~ad~vilv~d~~~~~s~~~~---~~~~~~------~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~  130 (142)
T TIGR02528        61 ADADVIALVQSATDPESRFPP---GFASIF------VKPVIGLVTKIDLAEADVD-IERAKELLETAGAEPIFEISSVDE  130 (142)
T ss_pred             hcCCEEEEEecCCCCCcCCCh---hHHHhc------cCCeEEEEEeeccCCcccC-HHHHHHHHHHcCCCcEEEEecCCC
Confidence            899999999999877665442   232222      1379999999999753222 222333333344446999999999


Q ss_pred             CCHHHHHHHHH
Q 020714          301 AGLKALTQYLM  311 (322)
Q Consensus       301 ~gi~el~~~i~  311 (322)
                      .|+++++++|.
T Consensus       131 ~gi~~l~~~l~  141 (142)
T TIGR02528       131 QGLEALVDYLN  141 (142)
T ss_pred             CCHHHHHHHHh
Confidence            99999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.84  E-value=4.8e-20  Score=150.96  Aligned_cols=157  Identities=20%  Similarity=0.263  Sum_probs=106.4

Q ss_pred             EEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccc
Q 020714          144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF  223 (322)
Q Consensus       144 v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~a  223 (322)
                      ++|.+|||||||+|++.+.. ..++..+++|.......+...+..+.+|||||+..+.......   ......+.. ..+
T Consensus         1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~---~~~~~~~~~-~~~   75 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDE---KVARDFLLG-EKP   75 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhH---HHHHHHhcC-CCC
Confidence            57999999999999999876 4455667778776665566667789999999997654321111   111222222 588


Q ss_pred             cEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH
Q 020714          224 EVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL  303 (322)
Q Consensus       224 d~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi  303 (322)
                      |++++|+|+.+..  ...   .+...+...   ++|+++|+||+|+......... ...+....+. +++++||++|.|+
T Consensus        76 d~vi~v~d~~~~~--~~~---~~~~~~~~~---~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~-~~~~iSa~~~~~~  145 (158)
T cd01879          76 DLIVNVVDATNLE--RNL---YLTLQLLEL---GLPVVVALNMIDEAEKRGIKID-LDKLSELLGV-PVVPTSARKGEGI  145 (158)
T ss_pred             cEEEEEeeCCcch--hHH---HHHHHHHHc---CCCEEEEEehhhhcccccchhh-HHHHHHhhCC-CeEEEEccCCCCH
Confidence            9999999996532  111   222233222   4689999999999765322222 2344444444 6999999999999


Q ss_pred             HHHHHHHHHHhh
Q 020714          304 KALTQYLMEQFK  315 (322)
Q Consensus       304 ~el~~~i~~~l~  315 (322)
                      ++++++|.+.+.
T Consensus       146 ~~l~~~l~~~~~  157 (158)
T cd01879         146 DELKDAIAELAE  157 (158)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.84  E-value=3.1e-20  Score=155.05  Aligned_cols=157  Identities=17%  Similarity=0.115  Sum_probs=103.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++++++|.+|+|||||++++.+..+..  ....++.+.....+...+  ..+.+|||||...+....            -
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------~   66 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPT--EYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLR------------P   66 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccc------------c
Confidence            479999999999999999998765432  222232222222222333  467899999986543211            1


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh------------hHHHHHHHHHhc
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAEQFKH  285 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~------------~~~~~~~~~~~~  285 (322)
                      ..+..+|++++|||++++.+.... ...|+..+... .++.|+++|+||+|+....            ....+....++.
T Consensus        67 ~~~~~a~~~i~v~d~~~~~sf~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~  144 (173)
T cd04130          67 LCYPDTDVFLLCFSVVNPSSFQNI-SEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE  144 (173)
T ss_pred             cccCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH
Confidence            246788999999999765444321 12355544432 2467899999999996432            122233455555


Q ss_pred             CCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714          286 LPGYERIFMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       286 ~~~~~~~~~iSa~~g~gi~el~~~i~~  312 (322)
                      ..+..++++|||++|.|++++|+.++-
T Consensus       145 ~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         145 KIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             HhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence            556657999999999999999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.84  E-value=3.6e-20  Score=154.18  Aligned_cols=161  Identities=17%  Similarity=0.218  Sum_probs=107.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .++|+++|++|||||||++++.+..+.... .+....+.....+...+  ..+.+|||||...+..         .+  .
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~--~   69 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERT-EATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK---------SM--V   69 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH---------hh--H
Confidence            478999999999999999999876643211 11111111112222333  5788999999763211         01  1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ...+..+|++++|||++++.+.  ..+..|+..+... ...+.|+++|+||+|+.............++..... +++++
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~  146 (170)
T cd04115          70 QHYYRNVHAVVFVYDVTNMASF--HSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSM-PLFET  146 (170)
T ss_pred             HHhhcCCCEEEEEEECCCHHHH--HhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCC-cEEEE
Confidence            1235788999999999764433  3345566555432 234689999999999976554444445555555544 69999


Q ss_pred             ecCC---CCCHHHHHHHHHHHh
Q 020714          296 SGLK---GAGLKALTQYLMEQF  314 (322)
Q Consensus       296 Sa~~---g~gi~el~~~i~~~l  314 (322)
                      ||++   +.|++++|..+.+.+
T Consensus       147 Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         147 SAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             eccCCcCCCCHHHHHHHHHHHh
Confidence            9999   999999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.84  E-value=7.6e-20  Score=154.09  Aligned_cols=161  Identities=17%  Similarity=0.133  Sum_probs=103.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      +..++|+++|++|||||||++++..+.+....++.+..    ...+...+..+.+|||||...+.            ...
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~----~~~~~~~~~~~~l~D~~G~~~~~------------~~~   78 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFN----VETVEYKNLKFTMWDVGGQDKLR------------PLW   78 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccc----eEEEEECCEEEEEEECCCCHhHH------------HHH
Confidence            34689999999999999999999766554332222221    12234467789999999985321            112


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC--CC-CCcE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PG-YERI  292 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~  292 (322)
                      ...+..+|++|+|+|+++..+.  .....++..+ ......+.|+++|+||+|+..... ..+....+...  .. ...+
T Consensus        79 ~~~~~~ad~iI~v~D~t~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~  155 (182)
T PTZ00133         79 RHYYQNTNGLIFVVDSNDRERI--GDAREELERMLSEDELRDAVLLVFANKQDLPNAMS-TTEVTEKLGLHSVRQRNWYI  155 (182)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC-HHHHHHHhCCCcccCCcEEE
Confidence            2346889999999999764322  2233334333 222234578999999999865321 12222222211  00 1136


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhh
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +++||++|.|++++++||.+.+.+
T Consensus       156 ~~~Sa~tg~gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        156 QGCCATTAQGLYEGLDWLSANIKK  179 (182)
T ss_pred             EeeeCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999987754

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.84  E-value=3.1e-20  Score=160.69  Aligned_cols=160  Identities=13%  Similarity=0.122  Sum_probs=108.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ++|+++|.+|||||||++++.+..+... .++.+..   ....+..+  ...+.||||+|...+..          +.  
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~---~~~~~~~~~~~v~L~iwDt~G~e~~~~----------l~--   66 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFEN---YTASFEIDKRRIELNMWDTSGSSYYDN----------VR--   66 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc---eEEEEEECCEEEEEEEEeCCCcHHHHH----------Hh--
Confidence            6899999999999999999998765432 1222211   11112233  35678999999864321          11  


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHHHh
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK  284 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~~~  284 (322)
                      -..+..+|++|+|||++++.+.... ...|...+.. ..++.|+++|+||+|+.....            +..+....++
T Consensus        67 ~~~~~~~d~illvfdis~~~Sf~~i-~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a  144 (222)
T cd04173          67 PLAYPDSDAVLICFDISRPETLDSV-LKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA  144 (222)
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence            1247899999999999775433221 1234444332 235689999999999965311            2234566677


Q ss_pred             cCCCCCcEEEeecCCCCC-HHHHHHHHHHHhhh
Q 020714          285 HLPGYERIFMTSGLKGAG-LKALTQYLMEQFKD  316 (322)
Q Consensus       285 ~~~~~~~~~~iSa~~g~g-i~el~~~i~~~l~~  316 (322)
                      +..+..++++|||+++.| |+++|+.+..+...
T Consensus       145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         145 KQVGAVSYVECSSRSSERSVRDVFHVATVASLG  177 (222)
T ss_pred             HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence            777765799999999985 99999999987655

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.84  E-value=6.8e-20  Score=153.20  Aligned_cols=155  Identities=18%  Similarity=0.187  Sum_probs=101.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ..++|+++|.+|||||||++++..+.+....+..+.+.    ......+..+.+|||||...+.            ....
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~l~D~~G~~~~~------------~~~~   77 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV----EEIVYKNIRFLMWDIGGQESLR------------SSWN   77 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce----EEEEECCeEEEEEECCCCHHHH------------HHHH
Confidence            35789999999999999999998776554433333322    2233457789999999985321            1111


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCCcE
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYERI  292 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~  292 (322)
                      ..+..+|++++|+|++++.+.  .....++..+ ......+.|+++|+||+|+.... ..++....+.    ..... ++
T Consensus        78 ~~~~~~d~vi~V~D~s~~~~~--~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~-~~~~i~~~l~~~~~~~~~~-~~  153 (174)
T cd04153          78 TYYTNTDAVILVIDSTDRERL--PLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM-TPAEISESLGLTSIRDHTW-HI  153 (174)
T ss_pred             HHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC-CHHHHHHHhCcccccCCce-EE
Confidence            346789999999999764322  2223333333 22223468899999999986532 1222223332    11222 58


Q ss_pred             EEeecCCCCCHHHHHHHHHH
Q 020714          293 FMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~  312 (322)
                      ++|||++|.||++++++|.+
T Consensus       154 ~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         154 QGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             EecccCCCCCHHHHHHHHhc
Confidence            99999999999999999964

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd01893 Miro1 Miro1 subfamily

Probab=99.84  E-value=6.7e-20  Score=151.97  Aligned_cols=160  Identities=18%  Similarity=0.163  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEE-EEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL-GVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +||+++|.+|||||||+|++.+..+...  .+.+...... .........+.+|||||...+..            ....
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~~   66 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPEN--VPRVLPEITIPADVTPERVPTTIVDTSSRPQDRA------------NLAA   66 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcc--CCCcccceEeeeeecCCeEEEEEEeCCCchhhhH------------HHhh
Confidence            3799999999999999999998776432  2222111111 11222456788999999764311            1223


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH--HHHHHHHHhc-CCCCCcEEEe
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD--LLKVAEQFKH-LPGYERIFMT  295 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~--~~~~~~~~~~-~~~~~~~~~i  295 (322)
                      .+..+|++++|+|++++.+.... ...|+..+.... ++.|+++|+||+|+.+....  .++....+.. .....++++|
T Consensus        67 ~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  144 (166)
T cd01893          67 EIRKANVICLVYSVDRPSTLERI-RTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVEC  144 (166)
T ss_pred             hcccCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEe
Confidence            45789999999999764333221 123444443322 36789999999999765431  2222222222 1222369999


Q ss_pred             ecCCCCCHHHHHHHHHHHhh
Q 020714          296 SGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~  315 (322)
                      ||++|.|++++|+.+.+.+.
T Consensus       145 Sa~~~~~v~~lf~~~~~~~~  164 (166)
T cd01893         145 SAKTLINVSEVFYYAQKAVL  164 (166)
T ss_pred             ccccccCHHHHHHHHHHHhc
Confidence            99999999999999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.84  E-value=7.9e-20  Score=154.24  Aligned_cols=158  Identities=13%  Similarity=0.113  Sum_probs=102.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+.++|+++|.+|||||||+|++.+..+..+.+..+.    ........+..+.+|||||...+         ..   ..
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~D~~G~~~~---------~~---~~   78 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHP----TSEELAIGNIKFTTFDLGGHQQA---------RR---LW   78 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCcccc----ceEEEEECCEEEEEEECCCCHHH---------HH---HH
Confidence            3468999999999999999999998765433222222    22334456788999999998532         11   11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC---------
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---------  286 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~---------  286 (322)
                      ...+..+|++++|+|+++..+.  .....++..+. .....+.|+++|+||+|+.... ..++....+.-.         
T Consensus        79 ~~~~~~ad~ii~vvD~~~~~~~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~-~~~~i~~~l~l~~~~~~~~~~  155 (184)
T smart00178       79 KDYFPEVNGIVYLVDAYDKERF--AESKRELDALLSDEELATVPFLILGNKIDAPYAA-SEDELRYALGLTNTTGSKGKV  155 (184)
T ss_pred             HHHhCCCCEEEEEEECCcHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC-CHHHHHHHcCCCccccccccc
Confidence            2346789999999999653222  22233333332 2223467899999999986431 122222232110         


Q ss_pred             -CCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714          287 -PGYERIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       287 -~~~~~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                       .....+++|||++|.|++++++||...
T Consensus       156 ~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      156 GVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             CCceeEEEEeecccCCChHHHHHHHHhh
Confidence             123358999999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.84  E-value=2e-19  Score=151.12  Aligned_cols=159  Identities=19%  Similarity=0.279  Sum_probs=103.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC-hhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~  214 (322)
                      .+.++|+++|.+|+|||||+|+|++.. ...++..+++|........   +..+.+|||||+........ .........
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---NDGFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---CCcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            467899999999999999999999875 5666777777766543322   24799999999864322111 111111222


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcCCCCCc
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYER  291 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~  291 (322)
                      ..+.....++++++|+|++.+.+..+..+..++..   .   +.|+++|+||+|+.....   ...+....+.......+
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~---~---~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE---R---GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH---c---CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence            33333345789999999987666555444444432   2   467999999999975421   22333333333222236


Q ss_pred             EEEeecCCCCCHH
Q 020714          292 IFMTSGLKGAGLK  304 (322)
Q Consensus       292 ~~~iSa~~g~gi~  304 (322)
                      ++++||++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999984

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.84  E-value=4.3e-19  Score=150.91  Aligned_cols=171  Identities=18%  Similarity=0.262  Sum_probs=112.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC-hhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~  213 (322)
                      ....++|+++|.+|||||||+|+|++.. ...++..+++|.......   .+..+.||||||+........ ........
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE---VNDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe---cCCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            3457889999999999999999999875 566677777776644322   246899999999764322111 11111222


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH--HHHHHHHHhcCCCCCc
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD--LLKVAEQFKHLPGYER  291 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~  291 (322)
                      ...+......+++++++|.+.+.+..+..+..++...      +.|+++++||+|+......  ............ ..+
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~~  170 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY------GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DDE  170 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc------CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CCc
Confidence            3333344556789999998765554443444444322      4569999999999764321  111122222222 246


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++++||++|.|+++++++|.+.+.+
T Consensus       171 ~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        171 VILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999999988764

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.84  E-value=1.2e-19  Score=152.96  Aligned_cols=162  Identities=14%  Similarity=0.116  Sum_probs=100.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEE-eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM-TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .++|+++|.+|||||||++++....+....+..+.+........ ...+..+.+|||||...+.      .      ...
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~------~------~~~   70 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR------P------LWK   70 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH------H------HHH
Confidence            57899999999999999999987765432222222222211111 1134678999999975321      0      111


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc---CC--CCCc
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LP--GYER  291 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~---~~--~~~~  291 (322)
                      ..+..+|++++|+|+++..+.  .....++..+... ...+.|+++|+||+|+..... .+. ...+..   ..  ...+
T Consensus        71 ~~~~~~d~ii~v~D~~~~~~~--~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~-~~~-~~~~~~~~~~~~~~~~~  146 (183)
T cd04152          71 SYTRCTDGIVFVVDSVDVERM--EEAKTELHKITRFSENQGVPVLVLANKQDLPNALS-VSE-VEKLLALHELSASTPWH  146 (183)
T ss_pred             HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCC-HHH-HHHHhCccccCCCCceE
Confidence            236789999999999653221  2233344433321 223578999999999864311 111 122221   11  1124


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++++||++|+|+++++++|.+.+.+
T Consensus       147 ~~~~SA~~~~gi~~l~~~l~~~l~~  171 (183)
T cd04152         147 VQPACAIIGEGLQEGLEKLYEMILK  171 (183)
T ss_pred             EEEeecccCCCHHHHHHHHHHHHHH
Confidence            7899999999999999999988854

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.84  E-value=1e-19  Score=151.85  Aligned_cols=158  Identities=13%  Similarity=0.128  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .+|+++|++|||||||++++.+..+....  ..+........+...  ...+.+|||||...+....            .
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------------~   67 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR------------P   67 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccccceEEEEEECCEEEEEEEEeCCCchhhhhcc------------c
Confidence            57999999999999999999987654221  111111111122223  3467899999986432211            0


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCChhH------------HHHHHHHHh
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAEQFK  284 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~------------~~~~~~~~~  284 (322)
                      ..+..+|++++|+|+++..+.  ..+ ..|+..+... .++.|+++|+||+|+......            .......++
T Consensus        68 ~~~~~~d~~i~v~~~~~~~s~--~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~  144 (175)
T cd01870          68 LSYPDTDVILMCFSIDSPDSL--ENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA  144 (175)
T ss_pred             cccCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence            235788999999999764322  222 2344444432 246889999999998653211            112233444


Q ss_pred             cCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       285 ~~~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      ...+..++++|||++|.|++++|++|.+++
T Consensus       145 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         145 NKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             HHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            434444799999999999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.83  E-value=1.1e-19  Score=149.49  Aligned_cols=153  Identities=15%  Similarity=0.122  Sum_probs=97.2

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|.+|||||||++++.+..+....+..+.+..   .........+.+|||||...+.            ......+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~l~i~D~~G~~~~~------------~~~~~~~   65 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE---MLQLEKHLSLTVWDVGGQEKMR------------TVWKCYL   65 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE---EEEeCCceEEEEEECCCCHhHH------------HHHHHHh
Confidence            488999999999999999998876543333332221   1111235679999999975321            1111346


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH-----hcCCCCCcEEE
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF-----KHLPGYERIFM  294 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~  294 (322)
                      ..+|++++|+|+++..+.  .....++..+. .....+.|+++|+||+|+..... ..+....+     ....+ .++++
T Consensus        66 ~~~~~iv~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~-~~~~~  141 (160)
T cd04156          66 ENTDGLVYVVDSSDEARL--DESQKELKHILKNEHIKGVPVVLLANKQDLPGALT-AEEITRRFKLKKYCSDRD-WYVQP  141 (160)
T ss_pred             ccCCEEEEEEECCcHHHH--HHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC-HHHHHHHcCCcccCCCCc-EEEEe
Confidence            788999999999764322  22333444332 22224688999999999964311 12222222     11112 25899


Q ss_pred             eecCCCCCHHHHHHHHHH
Q 020714          295 TSGLKGAGLKALTQYLME  312 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~  312 (322)
                      |||++|+|+++++++|.+
T Consensus       142 ~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         142 CSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             cccccCCChHHHHHHHhc
Confidence            999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00879 Sar1 Sar1 subfamily

Probab=99.83  E-value=1.1e-19  Score=153.81  Aligned_cols=159  Identities=14%  Similarity=0.149  Sum_probs=103.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+..+|+++|++|||||||++++.+.......+..+    .....+..++..+.+|||||...+.            ...
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~----~~~~~i~~~~~~~~l~D~~G~~~~~------------~~~   80 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLH----PTSEELTIGNIKFKTFDLGGHEQAR------------RLW   80 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccC----cceEEEEECCEEEEEEECCCCHHHH------------HHH
Confidence            457889999999999999999999876543222222    2223344567889999999975320            112


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc----------
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----------  285 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~----------  285 (322)
                      ...+..+|++++|+|+++..+.  .....++..+ ......+.|+++|+||+|+.... ..++....+..          
T Consensus        81 ~~~~~~ad~iilV~D~~~~~s~--~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~  157 (190)
T cd00879          81 KDYFPEVDGIVFLVDAADPERF--QESKEELDSLLSDEELANVPFLILGNKIDLPGAV-SEEELRQALGLYGTTTGKGVS  157 (190)
T ss_pred             HHHhccCCEEEEEEECCcHHHH--HHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc-CHHHHHHHhCccccccccccc
Confidence            2346788999999999754222  1223344443 32333468999999999996431 22222222211          


Q ss_pred             ---CC-CCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          286 ---LP-GYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       286 ---~~-~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                         .. ...++++|||++|+|++++|+||.+.+
T Consensus       158 ~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         158 LKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             ccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence               01 112589999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.83  E-value=7.9e-20  Score=150.20  Aligned_cols=152  Identities=17%  Similarity=0.174  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH-Hhh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA-WSA  219 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~-~~~  219 (322)
                      +|+++|.+|||||||++++.........+..+.+.    ..+...+..+.+|||||...+             ... ...
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~   63 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNV----ETVTYKNLKFQVWDLGGQTSI-------------RPYWRCY   63 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCe----EEEEECCEEEEEEECCCCHHH-------------HHHHHHH
Confidence            48999999999999999997765543222222211    123345678899999998632             111 234


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHH-HhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCC---CCCcEEEe
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIE-RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERIFMT  295 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~-~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~i  295 (322)
                      +..+|++++|+|+++..+..  ....++. .+......+.|+++|+||+|+..... ..+....+....   ...++++|
T Consensus        64 ~~~~~~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~  140 (158)
T cd04151          64 YSNTDAIIYVVDSTDRDRLG--TAKEELHAMLEEEELKGAVLLVFANKQDMPGALS-EAEISEKLGLSELKDRTWSIFKT  140 (158)
T ss_pred             hcCCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC-HHHHHHHhCccccCCCcEEEEEe
Confidence            67899999999996542211  1122222 22222234678999999999975421 222222221110   11259999


Q ss_pred             ecCCCCCHHHHHHHHHH
Q 020714          296 SGLKGAGLKALTQYLME  312 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~  312 (322)
                      ||++|.|+++++++|.+
T Consensus       141 Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         141 SAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             eccCCCCHHHHHHHHhc
Confidence            99999999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00876 Ras Ras family

Probab=99.83  E-value=1.1e-19  Score=148.94  Aligned_cols=157  Identities=16%  Similarity=0.128  Sum_probs=102.3

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +|+++|++|||||||++++++....  .....++.+.........  ...+.+||+||...+.      .      ....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~------~~~~   66 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFV--EEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS------A------MRDL   66 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC--cCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH------H------HHHH
Confidence            5899999999999999999876532  222333333333333333  3567899999976421      1      1113


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC-CCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~-~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      .+..+|++++|+|.++..+.  .....+...+..... ...|+++|+||+|+........+....+....+ .+++++||
T Consensus        67 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~  143 (160)
T cd00876          67 YIRQGDGFILVYSITDRESF--EEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSA  143 (160)
T ss_pred             HHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEecc
Confidence            45678999999999654322  233344433332221 468899999999998643333333444444344 36999999


Q ss_pred             CCCCCHHHHHHHHHHHh
Q 020714          298 LKGAGLKALTQYLMEQF  314 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l  314 (322)
                      ++|.|+++++++|.+.+
T Consensus       144 ~~~~~i~~l~~~l~~~i  160 (160)
T cd00876         144 KDNINIDEVFKLLVREI  160 (160)
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            99999999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01890 LepA LepA subfamily

Probab=99.83  E-value=8e-20  Score=153.10  Aligned_cols=155  Identities=17%  Similarity=0.249  Sum_probs=96.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeee--------ee------cCCCCceeeeEEEEE-----eeCCccEEEEeCCCcccCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVA--------AV------SRKTNTTTHEVLGVM-----TKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~--------~~------~~~~~~t~~~~~~~~-----~~~~~~~~l~DtpG~~~~~  201 (322)
                      +|+++|.+|||||||+++|++....        ..      ....|.+........     ...+..+.+|||||+..+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            5899999999999999999863210        01      111233433222222     2235567899999997531


Q ss_pred             CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHH
Q 020714          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE  281 (322)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~  281 (322)
                      .            .....+..+|++++|+|++++.+.........+.   .   .+.|+++|+||+|+.....  .....
T Consensus        82 ~------------~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~---~---~~~~iiiv~NK~Dl~~~~~--~~~~~  141 (179)
T cd01890          82 Y------------EVSRSLAACEGALLLVDATQGVEAQTLANFYLAL---E---NNLEIIPVINKIDLPSADP--ERVKQ  141 (179)
T ss_pred             H------------HHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH---H---cCCCEEEEEECCCCCcCCH--HHHHH
Confidence            1            1223456789999999997654433322222111   1   2467999999999865322  11122


Q ss_pred             HHhcCCCC--CcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          282 QFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       282 ~~~~~~~~--~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .+.+..+.  .+++++||++|.|+++++++|.+.+.
T Consensus       142 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         142 QIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             HHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            23322232  25899999999999999999988763

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.83  E-value=6.5e-20  Score=156.01  Aligned_cols=157  Identities=15%  Similarity=0.156  Sum_probs=103.3

Q ss_pred             ceEEEEEcCCCCchhHHHH-HHhCCeeee---ecCCCCce----eeeEEE--------EEeeCCccEEEEeCCCcccCCC
Q 020714          139 SVAVGIIGAPNAGKSSIIN-YMVGTKVAA---VSRKTNTT----THEVLG--------VMTKADTQICIFDTPGLMLNKS  202 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin-~l~~~~~~~---~~~~~~~t----~~~~~~--------~~~~~~~~~~l~DtpG~~~~~~  202 (322)
                      .+||+++|.+|||||||+. ++.+..+..   ......|.    ......        ........+.||||+|....  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4789999999999999996 555443211   01111111    011000        11122457889999998631  


Q ss_pred             CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCC----------
Q 020714          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVT----------  271 (322)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~----------  271 (322)
                                +.  ...+..+|++++|||++++.+...  +. .|+..+... .++.|+++|+||+|+..          
T Consensus        80 ----------~~--~~~~~~ad~iilv~d~t~~~Sf~~--~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~  144 (195)
T cd01873          80 ----------DR--RFAYGRSDVVLLCFSIASPNSLRN--VKTMWYPEIRHF-CPRVPVILVGCKLDLRYADLDEVNRAR  144 (195)
T ss_pred             ----------hh--cccCCCCCEEEEEEECCChhHHHH--HHHHHHHHHHHh-CCCCCEEEEEEchhccccccchhhhcc
Confidence                      11  125789999999999977654433  32 355555432 24678999999999964          


Q ss_pred             ---------ChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714          272 ---------KKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       272 ---------~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                               .+.+..+....+++..+. ++++|||++|.||+++|+.+.++
T Consensus       145 ~~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         145 RPLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             cccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence                     133445567777777777 69999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.83  E-value=1.5e-19  Score=150.16  Aligned_cols=154  Identities=16%  Similarity=0.152  Sum_probs=101.2

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|.+|||||||++++.+.......+..+.+.    ..+...+..+.+|||||...+.         .   .....+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~~~i~D~~G~~~~~---------~---~~~~~~   64 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP----TKLRLDKYEVCIFDLGGGANFR---------G---IWVNYY   64 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE----EEEEECCEEEEEEECCCcHHHH---------H---HHHHHH
Confidence            37899999999999999998763333333334332    2234567889999999975321         1   122456


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHH--HHH--HHHHhcCCCC-CcEEE
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDL--LKV--AEQFKHLPGY-ERIFM  294 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~--~~~--~~~~~~~~~~-~~~~~  294 (322)
                      ..+|++++|+|+++..+  ......++..+... ...+.|+++|+||+|+.......  .+.  ...+....+. ..+++
T Consensus        65 ~~a~~ii~V~D~s~~~s--~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~  142 (167)
T cd04161          65 AEAHGLVFVVDSSDDDR--VQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEP  142 (167)
T ss_pred             cCCCEEEEEEECCchhH--HHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEE
Confidence            88999999999976432  23344556655432 23468999999999997654211  111  1222222222 25788


Q ss_pred             eecCCC------CCHHHHHHHHHH
Q 020714          295 TSGLKG------AGLKALTQYLME  312 (322)
Q Consensus       295 iSa~~g------~gi~el~~~i~~  312 (322)
                      |||++|      .|+++.|+||..
T Consensus       143 ~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         143 CSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             eEceeCCCCccccCHHHHHHHHhc
Confidence            999998      899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01889 SelB_euk SelB subfamily

Probab=99.83  E-value=1.7e-19  Score=153.19  Aligned_cols=159  Identities=18%  Similarity=0.302  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCe------eeeecCCCCceeeeEEEEEeeC--------------CccEEEEeCCCccc
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTK------VAAVSRKTNTTTHEVLGVMTKA--------------DTQICIFDTPGLML  199 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~------~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~l~DtpG~~~  199 (322)
                      ++|+++|.+|+|||||+++|++..      ........++|.......+...              +..+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            479999999999999999998631      1112223355544433322222              66889999999742


Q ss_pred             CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HH
Q 020714          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DL  276 (322)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~  276 (322)
                                  .....+.....+|++++|+|++.+..........+....      +.|+++|+||+|+.....   ..
T Consensus        81 ------------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~  142 (192)
T cd01889          81 ------------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEIL------CKKLIVVLNKIDLIPEEERERKI  142 (192)
T ss_pred             ------------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHc------CCCEEEEEECcccCCHHHHHHHH
Confidence                        133444456678999999999765433332222222211      357999999999975322   12


Q ss_pred             HHHHHHHhcC-----CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          277 LKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       277 ~~~~~~~~~~-----~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      .+..+.+...     ....+++++||++|.|+++|+++|.+.+..
T Consensus       143 ~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         143 EKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            2222222111     122469999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.83  E-value=2.5e-19  Score=151.03  Aligned_cols=157  Identities=18%  Similarity=0.277  Sum_probs=103.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeec---------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVS---------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS  205 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~  205 (322)
                      +|+++|.+|+|||||+|+|.+.......               ...++|...........+..+.+|||||+..+     
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~-----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF-----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence            3899999999999999999876543221               12234444444444555778999999997532     


Q ss_pred             hhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--H-HHHHHHH
Q 020714          206 HKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--D-LLKVAEQ  282 (322)
Q Consensus       206 ~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~-~~~~~~~  282 (322)
                             .......+..+|++++|+|++.+...........+   ..   .+.|+++|+||+|+.....  . .......
T Consensus        76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~---~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~  142 (189)
T cd00881          76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIA---RE---GGLPIIVAINKIDRVGEEDLEEVLREIKEL  142 (189)
T ss_pred             -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHH---HH---CCCCeEEEEECCCCcchhcHHHHHHHHHHH
Confidence                   11122345678999999999765543333333332   22   2567999999999986321  1 2222222


Q ss_pred             HhcC------------CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          283 FKHL------------PGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       283 ~~~~------------~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +...            ....+++++||++|.|+++++++|.+.+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             HccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence            2221            12457999999999999999999998874

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.83  E-value=4.1e-19  Score=146.97  Aligned_cols=156  Identities=19%  Similarity=0.234  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee---CCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .|+++|.+|+|||||+|+|.+..+... ..+++|..........   .+..+.+|||||...+.      .      ...
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~------~------~~~   68 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT------N------MRA   68 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccc-cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH------H------HHH
Confidence            489999999999999999998765432 2234444332222333   36789999999975321      1      111


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHHHHHHh-----cCCCCCc
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQFK-----HLPGYER  291 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~~~-----~~~~~~~  291 (322)
                      ..+..+|++++|+|++++..........++..      .+.|+++|+||+|+..... ........+.     ......+
T Consensus        69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (168)
T cd01887          69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKA------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQ  142 (168)
T ss_pred             HHHhhcCEEEEEEECCCCccHHHHHHHHHHHH------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCc
Confidence            23567899999999976543222222233322      2467999999999975321 1111122111     1112246


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhh
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      ++++||++|.|+++++++|.+...
T Consensus       143 ~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         143 IVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             EEEeecccCCCHHHHHHHHHHhhh
Confidence            999999999999999999988764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.83  E-value=2.9e-19  Score=147.02  Aligned_cols=146  Identities=18%  Similarity=0.254  Sum_probs=96.1

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|.+|||||||+|+|.+....  .   ..|..     ....+.  .+|||||+.....        ..+...+..+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~-----v~~~~~--~~iDtpG~~~~~~--------~~~~~~~~~~   62 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQA-----VEFNDK--GDIDTPGEYFSHP--------RWYHALITTL   62 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceE-----EEECCC--CcccCCccccCCH--------HHHHHHHHHH
Confidence            6999999999999999999876421  1   11111     112222  2699999853221        1233334457


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      ..+|++++|+|++...+...    .++..+.    .+.|+++++||+|+...  ..+.....+.......+++++||++|
T Consensus        63 ~~ad~il~v~d~~~~~s~~~----~~~~~~~----~~~~ii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~p~~~~Sa~~g  132 (158)
T PRK15467         63 QDVDMLIYVHGANDPESRLP----AGLLDIG----VSKRQIAVISKTDMPDA--DVAATRKLLLETGFEEPIFELNSHDP  132 (158)
T ss_pred             hcCCEEEEEEeCCCcccccC----HHHHhcc----CCCCeEEEEEccccCcc--cHHHHHHHHHHcCCCCCEEEEECCCc
Confidence            88999999999976544322    2333332    24679999999998653  23333333333322247999999999


Q ss_pred             CCHHHHHHHHHHHhhh
Q 020714          301 AGLKALTQYLMEQFKD  316 (322)
Q Consensus       301 ~gi~el~~~i~~~l~~  316 (322)
                      +|+++++++|.+.+.+
T Consensus       133 ~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        133 QSVQQLVDYLASLTKQ  148 (158)
T ss_pred             cCHHHHHHHHHHhchh
Confidence            9999999999998865

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.82  E-value=1e-19  Score=155.26  Aligned_cols=155  Identities=15%  Similarity=0.176  Sum_probs=103.0

Q ss_pred             EcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccc
Q 020714          145 IGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF  223 (322)
Q Consensus       145 ~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~a  223 (322)
                      +|.+|||||||+++++...+.. ..+..|.+..............+.||||+|...+..          +  ....+..+
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~----------l--~~~~~~~a   68 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG----------L--RDGYYIQG   68 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh----------h--hHHHhcCC
Confidence            5999999999999998765432 222223222222211222346789999999875422          1  11357889


Q ss_pred             cEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH
Q 020714          224 EVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL  303 (322)
Q Consensus       224 d~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi  303 (322)
                      |++++|||+++..+.  ..+..|+..+... .++.|+++|+||+|+...... .+.. .++...++ ++++|||++|.||
T Consensus        69 d~~ilV~D~t~~~S~--~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~~v~-~~~~-~~~~~~~~-~~~e~SAk~~~~v  142 (200)
T smart00176       69 QCAIIMFDVTARVTY--KNVPNWHRDLVRV-CENIPIVLCGNKVDVKDRKVK-AKSI-TFHRKKNL-QYYDISAKSNYNF  142 (200)
T ss_pred             CEEEEEEECCChHHH--HHHHHHHHHHHHh-CCCCCEEEEEECcccccccCC-HHHH-HHHHHcCC-EEEEEeCCCCCCH
Confidence            999999999775433  2345566666543 246899999999998643222 2222 33444454 5999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 020714          304 KALTQYLMEQFKDL  317 (322)
Q Consensus       304 ~el~~~i~~~l~~~  317 (322)
                      +++|++|.+.+...
T Consensus       143 ~~~F~~l~~~i~~~  156 (200)
T smart00176      143 EKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999888653

Ran is involved in the active transport of proteins through nuclear pores.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.82  E-value=2.8e-19  Score=150.05  Aligned_cols=161  Identities=16%  Similarity=0.169  Sum_probs=102.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .+|+++|.+|||||||++++.+..+..  ...+++...........  +..+.+|||||...+..          +  ..
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~--~~   67 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVE--SYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI----------L--PQ   67 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcc--ccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHH----------H--HH
Confidence            479999999999999999999766432  11222222112222233  34578999999864311          1  11


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ..+..++++++++|+++..+.  ..+..+...+.. ....+.|+++|+||+|+...+.........+....+. +++++|
T Consensus        68 ~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  144 (180)
T cd04137          68 KYSIGIHGYILVYSVTSRKSF--EVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGA-AFLESS  144 (180)
T ss_pred             HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCC-eEEEEe
Confidence            235567999999999764322  223333333322 1223578999999999975432222223333343343 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhhc
Q 020714          297 GLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~~  317 (322)
                      |++|.|+.+++++|.+.+...
T Consensus       145 a~~~~gv~~l~~~l~~~~~~~  165 (180)
T cd04137         145 ARENENVEEAFELLIEEIEKV  165 (180)
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999988764

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.82  E-value=8.6e-20  Score=150.32  Aligned_cols=158  Identities=19%  Similarity=0.265  Sum_probs=111.2

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ||+++|.+|||||||++++.+..+.... +..+.  +.....+...  ...+.+||++|...+      ..    ..  .
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~g~~~~------~~----~~--~   66 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGI--DSYSKEVSIDGKPVNLEIWDTSGQERF------DS----LR--D   66 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSE--EEEEEEEEETTEEEEEEEEEETTSGGG------HH----HH--H
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccc--ccccccccccccccccccccccccccc------cc----cc--c
Confidence            6899999999999999999887644221 12222  2222223333  446899999997643      11    11  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|+++++||.++..+.  ..+..|+..+......+.|+++|+||.|+...+....+....++..++ .+++++||
T Consensus        67 ~~~~~~~~~ii~fd~~~~~S~--~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa  143 (162)
T PF00071_consen   67 IFYRNSDAIIIVFDVTDEESF--ENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSA  143 (162)
T ss_dssp             HHHTTESEEEEEEETTBHHHH--HTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBT
T ss_pred             ccccccccccccccccccccc--cccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEEC
Confidence            346788999999999664322  345577777665544568999999999998744444445566666666 47999999


Q ss_pred             CCCCCHHHHHHHHHHHhh
Q 020714          298 LKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~  315 (322)
                      ++|.||.++|..+++.+.
T Consensus       144 ~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  144 KNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             TTTTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04129 Rho2 Rho2 subfamily

Probab=99.82  E-value=2.5e-19  Score=151.53  Aligned_cols=161  Identities=16%  Similarity=0.156  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .+++++|++|+|||||++++....+.... .+ +............+  ..+.+|||+|...+....+            
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~------------   67 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEY-HP-TVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRP------------   67 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc-CC-cccceEEEEEEECCEEEEEEEEECCCChhccccch------------
Confidence            47999999999999999999865543211 11 11111111222232  4578999999865432110            


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCCh----------hHHHHHHHHHhcC
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKK----------KDLLKVAEQFKHL  286 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~----------~~~~~~~~~~~~~  286 (322)
                      ..+..+|++++++|+++..+.  ..+. .|+..+... .++.|+++|+||+|+....          ....+....++..
T Consensus        68 ~~~~~a~~~llv~~i~~~~s~--~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (187)
T cd04129          68 LSYSKAHVILIGFAVDTPDSL--ENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE  144 (187)
T ss_pred             hhcCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHh-CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence            135778999999999654322  2232 355555432 2468999999999985421          1112334455555


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      .+..++++|||++|.|++++|+++.+.+...
T Consensus       145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~  175 (187)
T cd04129         145 IGAKKYMECSALTGEGVDDVFEAATRAALLV  175 (187)
T ss_pred             hCCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence            6655799999999999999999999877653

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04155 Arl3 Arl3 subfamily

Probab=99.82  E-value=2.8e-19  Score=148.97  Aligned_cols=157  Identities=16%  Similarity=0.185  Sum_probs=100.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...++|+++|++|||||||++++.+.......+..|.+.    ..+...+..+.+|||||...+         ..   ..
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~---------~~---~~   75 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQRAI---------RP---YW   75 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCHHH---------HH---HH
Confidence            447899999999999999999999876544333333322    123345778999999997521         11   11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc--C-CCCCcE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--L-PGYERI  292 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~--~-~~~~~~  292 (322)
                      ...+..+|++++|+|++...+.  .....++..+ ......+.|+++++||+|+..... ..+....+.-  . ....++
T Consensus        76 ~~~~~~~~~ii~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~~~~~~~~~~~  152 (173)
T cd04155          76 RNYFENTDCLIYVIDSADKKRL--EEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP-AEEIAEALNLHDLRDRTWHI  152 (173)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC-HHHHHHHcCCcccCCCeEEE
Confidence            1235788999999999653211  1222333322 222223578999999999875422 2222222211  1 111247


Q ss_pred             EEeecCCCCCHHHHHHHHHH
Q 020714          293 FMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~  312 (322)
                      +++||++|+|++++++||.+
T Consensus       153 ~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         153 QACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EEeECCCCCCHHHHHHHHhc
Confidence            89999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.82  E-value=4.1e-19  Score=145.73  Aligned_cols=153  Identities=15%  Similarity=0.138  Sum_probs=100.2

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      ||+++|.+|||||||++++.+..........+.+..    .+...+..+.+|||||...+..         .   ....+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~---------~---~~~~~   64 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE----TVEYKNVSFTVWDVGGQDKIRP---------L---WKHYY   64 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE----EEEECCEEEEEEECCCChhhHH---------H---HHHHh
Confidence            589999999999999999998874433333333322    2334567899999999864311         1   11345


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc---CCCCCcEEEee
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPGYERIFMTS  296 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~iS  296 (322)
                      ..+|++++|+|++.+.+..  ....++..+. .....+.|+++|+||+|+.... ...+....+..   .....+++++|
T Consensus        65 ~~~~~~i~v~D~~~~~~~~--~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S  141 (158)
T cd00878          65 ENTNGIIFVVDSSDRERIE--EAKEELHKLLNEEELKGVPLLIFANKQDLPGAL-SVSELIEKLGLEKILGRRWHIQPCS  141 (158)
T ss_pred             ccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCcEEEEeeccCCcccc-CHHHHHHhhChhhccCCcEEEEEee
Confidence            7789999999997543222  2333333332 2223568999999999997643 12222222221   11233699999


Q ss_pred             cCCCCCHHHHHHHHHH
Q 020714          297 GLKGAGLKALTQYLME  312 (322)
Q Consensus       297 a~~g~gi~el~~~i~~  312 (322)
                      |++|.|+++++++|..
T Consensus       142 a~~~~gv~~~~~~l~~  157 (158)
T cd00878         142 AVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCCCHHHHHHHHhh
Confidence            9999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.82  E-value=3.6e-19  Score=152.01  Aligned_cols=159  Identities=15%  Similarity=0.089  Sum_probs=100.5

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +|+++|.+|||||||++++++..+...  ...++.......+...+  ..+.+|||||...+..      +    .  ..
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~----~--~~   66 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPK--YRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA------M----R--KL   66 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcc--CCCchhhheeEEEEECCEEEEEEEEECCCchhhhH------H----H--HH
Confidence            589999999999999999988765421  11222122222233334  5678999999764311      1    1  12


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCC-hhHHH-HHHHHHhcCCCCCcEEEe
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTK-KKDLL-KVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~~i  295 (322)
                      .+..+|++++|||+++..+..  ....+...+... ...+.|+++|+||+|+... ..... .........++ .+++++
T Consensus        67 ~~~~ad~vilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~-~~~~~~  143 (198)
T cd04147          67 SIQNSDAFALVYAVDDPESFE--EVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWN-CGFVET  143 (198)
T ss_pred             HhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcC-CcEEEe
Confidence            467889999999997643322  233444433322 1235889999999999653 21111 11122211222 368999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      ||++|.|+++++++|.+.+..
T Consensus       144 Sa~~g~gv~~l~~~l~~~~~~  164 (198)
T cd04147         144 SAKDNENVLEVFKELLRQANL  164 (198)
T ss_pred             cCCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999987753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.7e-19  Score=140.10  Aligned_cols=165  Identities=15%  Similarity=0.166  Sum_probs=125.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      -.+|+.++|.+.||||||+.+..+..+.. .-...|...............++++|||.|++.+.      .+      +
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryr------ti------T   87 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYR------TI------T   87 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhh------HH------H
Confidence            35699999999999999999998765432 11222222222222222234678999999998532      11      2


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      -..++.++++|+++|+.+.  +....+..|.-.++.....+.|+|+|+||||+...+....+....+.+..|+ .+|++|
T Consensus        88 TayyRgamgfiLmyDitNe--eSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEtS  164 (193)
T KOG0093|consen   88 TAYYRGAMGFILMYDITNE--ESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFETS  164 (193)
T ss_pred             HHHhhccceEEEEEecCCH--HHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhhc
Confidence            2457899999999999763  2334688899998888788899999999999998877777778888888898 599999


Q ss_pred             cCCCCCHHHHHHHHHHHhhhc
Q 020714          297 GLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||.+.|++++|+.+...+.+.
T Consensus       165 aK~NinVk~~Fe~lv~~Ic~k  185 (193)
T KOG0093|consen  165 AKENINVKQVFERLVDIICDK  185 (193)
T ss_pred             ccccccHHHHHHHHHHHHHHH
Confidence            999999999999999887654

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=2e-18  Score=143.07  Aligned_cols=170  Identities=23%  Similarity=0.313  Sum_probs=120.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC-hhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~  215 (322)
                      ...-|+++|-+|||||||||+|++.+ .+.++.+||.|.......  . +..+.++|.||+........ .+.....+..
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~--~-~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE--V-DDELRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE--e-cCcEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            45679999999999999999999954 789999999998766432  2 33489999999974432111 1111222333


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH---HHHHHHHhcCCCCC-c
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGYE-R  291 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~---~~~~~~~~~~~~~~-~  291 (322)
                      .+..=..-.++++++|+.+.....+..+.+|+...+      .|+++|+||+|.....+..   ......+....... .
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~------i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~  173 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELG------IPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQW  173 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcC------CCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccce
Confidence            333324457899999998888887888888888766      4599999999998864322   22232332222221 2


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++..|+.++.|++++...|.+.+..
T Consensus       174 ~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         174 VVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             EEEEecccccCHHHHHHHHHHHhhc
Confidence            8889999999999999999988764

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=2.9e-18  Score=150.96  Aligned_cols=173  Identities=24%  Similarity=0.316  Sum_probs=126.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      .+..+.++|.|+||||||||++.+++.+ +.+.+.|.||+....+.+..++.+++++||||+.+.....- ..+......
T Consensus       165 dp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~Er-N~IE~qAi~  242 (346)
T COG1084         165 DPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEER-NEIERQAIL  242 (346)
T ss_pred             CCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHh-cHHHHHHHH
Confidence            4577899999999999999999999876 56788999999999999999999999999999985322111 112222222


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ++.  .-.++|+++||.+..+.-.-+....++++++..-  ..|+++|+||+|+... +..++....+... +......+
T Consensus       243 AL~--hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~-e~~~~~~~~~~~~-~~~~~~~~  316 (346)
T COG1084         243 ALR--HLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADE-EKLEEIEASVLEE-GGEEPLKI  316 (346)
T ss_pred             HHH--HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccch-hHHHHHHHHHHhh-ccccccce
Confidence            222  3358999999998877766666666777766442  2689999999999864 3333333333333 33346889


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      |+..+.+++.+.+.+.....+
T Consensus       317 ~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         317 SATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             eeeehhhHHHHHHHHHHHhhc
Confidence            999999999999888877544

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.81  E-value=1.4e-18  Score=141.17  Aligned_cols=157  Identities=24%  Similarity=0.297  Sum_probs=98.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ++|+++|.+|+|||||+|++.+.. ......++++.......+..++  ..+.+|||||...+..     .....     
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----~~~~~-----   70 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA-----IRRLY-----   70 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH-----HHHHH-----
Confidence            689999999999999999999887 4445556666665554455556  6788999999654321     11111     


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                        ...++.++.++|..............+...+......+.|+++|+||+|+.... ........+..... .+++++||
T Consensus        71 --~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~-~~~~~~sa  146 (161)
T TIGR00231        71 --YRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNG-EPIIPLSA  146 (161)
T ss_pred             --HhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccC-CceEEeec
Confidence              233455555555543311111111122222221111157899999999997643 23333334444333 46999999


Q ss_pred             CCCCCHHHHHHHHH
Q 020714          298 LKGAGLKALTQYLM  311 (322)
Q Consensus       298 ~~g~gi~el~~~i~  311 (322)
                      ++|.|+.+++++|.
T Consensus       147 ~~~~gv~~~~~~l~  160 (161)
T TIGR00231       147 ETGKNIDSAFKIVE  160 (161)
T ss_pred             CCCCCHHHHHHHhh
Confidence            99999999999875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd00880 Era_like Era (E

Probab=99.81  E-value=1.5e-18  Score=141.09  Aligned_cols=160  Identities=26%  Similarity=0.334  Sum_probs=109.8

Q ss_pred             EEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhccc
Q 020714          144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL  222 (322)
Q Consensus       144 v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (322)
                      ++|++|+|||||+|++.+..........++|........... +..+.+|||||+..+......     ........+..
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~-----~~~~~~~~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE-----REELARRVLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh-----HHHHHHHHHHh
Confidence            579999999999999998876656666777766655544433 678999999999765431110     01233345677


Q ss_pred             ccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHH--HHHHhcCCCCCcEEEeecCCC
Q 020714          223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV--AEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       223 ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      +|++++|+|++.........   +......   .+.|+++|+||+|+..........  ...........+++++||++|
T Consensus        76 ~d~il~v~~~~~~~~~~~~~---~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  149 (163)
T cd00880          76 ADLILFVVDADLRADEEEEK---LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTG  149 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHH---HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeecc
Confidence            89999999997754443322   2333222   256799999999998754332221  122233344557999999999


Q ss_pred             CCHHHHHHHHHHHh
Q 020714          301 AGLKALTQYLMEQF  314 (322)
Q Consensus       301 ~gi~el~~~i~~~l  314 (322)
                      .|+++++++|.+.+
T Consensus       150 ~~v~~l~~~l~~~~  163 (163)
T cd00880         150 EGIDELREALIEAL  163 (163)
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.4e-19  Score=140.85  Aligned_cols=163  Identities=15%  Similarity=0.196  Sum_probs=122.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      -++|+++|..|||||+|+.+++.+-++. .+...|+........+.....++++|||+|++.|..      +      +.
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrs------i------tq   74 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRS------I------TQ   74 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHH------H------HH
Confidence            5899999999999999999998765542 233344444444433444456789999999986532      1      12


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      .+++-|+.+|+|+|++-..+.  .-+.+|+.++.......+-.|+|+||+|+.+.+++..+..+.|.+.... -++++||
T Consensus        75 syyrsahalilvydiscqpsf--dclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdm-yfletsa  151 (213)
T KOG0095|consen   75 SYYRSAHALILVYDISCQPSF--DCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDM-YFLETSA  151 (213)
T ss_pred             HHhhhcceEEEEEecccCcch--hhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhh-hhhhhcc
Confidence            346778999999999765444  3477888888776655666899999999999888888989998877544 4899999


Q ss_pred             CCCCCHHHHHHHHHHHhhh
Q 020714          298 LKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~  316 (322)
                      +..+|++.||..+.-.+..
T Consensus       152 kea~nve~lf~~~a~rli~  170 (213)
T KOG0095|consen  152 KEADNVEKLFLDLACRLIS  170 (213)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            9999999999888766543

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.81  E-value=5.7e-19  Score=146.20  Aligned_cols=151  Identities=16%  Similarity=0.103  Sum_probs=99.6

Q ss_pred             EEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          142 VGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      |+++|.+|||||||++++.+..+.. ..+..+..    ...+...+..+.+|||||...+..            .....+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~----~~~i~~~~~~l~i~Dt~G~~~~~~------------~~~~~~   65 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN----SVAIPTQDAIMELLEIGGSQNLRK------------YWKRYL   65 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc----eEEEeeCCeEEEEEECCCCcchhH------------HHHHHH
Confidence            7899999999999999999775432 11222221    122345567899999999864321            111346


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHH----HHHHHHhcCCCCCcEEEee
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL----KVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~iS  296 (322)
                      ..+|++++|+|.+++.+.  .....++..+.... ++.|+++|+||+|+........    .....+....+. +++++|
T Consensus        66 ~~ad~ii~V~D~t~~~s~--~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~S  141 (164)
T cd04162          66 SGSQGLIFVVDSADSERL--PLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW-ILQGTS  141 (164)
T ss_pred             hhCCEEEEEEECCCHHHH--HHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCce-EEEEee
Confidence            788999999999764322  23445555554322 5789999999999976542211    112334333444 578898


Q ss_pred             cCC------CCCHHHHHHHHHH
Q 020714          297 GLK------GAGLKALTQYLME  312 (322)
Q Consensus       297 a~~------g~gi~el~~~i~~  312 (322)
                      |++      ++|++++|+.++.
T Consensus       142 a~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         142 LDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             ecCCCChhHHHHHHHHHHHHhc
Confidence            888      9999999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.80  E-value=1.5e-18  Score=173.78  Aligned_cols=166  Identities=18%  Similarity=0.287  Sum_probs=119.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .++|+++|.||||||||+|+|++.+. .+++.+|+|.+...+.+...+..+.++||||+..+..........+.+.+.+.
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l   81 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence            46899999999999999999998764 67888999998888877777889999999999765432221122222333333


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      ....+|++++|+|+++.  +...   .+...+...   +.|+++|+||+|+...... ....+.+.+..+. +++++||+
T Consensus        82 ~~~~aD~vI~VvDat~l--er~l---~l~~ql~e~---giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~-pVvpiSA~  151 (772)
T PRK09554         82 LSGDADLLINVVDASNL--ERNL---YLTLQLLEL---GIPCIVALNMLDIAEKQNI-RIDIDALSARLGC-PVIPLVST  151 (772)
T ss_pred             hccCCCEEEEEecCCcc--hhhH---HHHHHHHHc---CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCC-CEEEEEee
Confidence            34678999999999653  2122   222333222   4679999999998754332 2234455555666 69999999


Q ss_pred             CCCCHHHHHHHHHHHhh
Q 020714          299 KGAGLKALTQYLMEQFK  315 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~  315 (322)
                      +|+|++++.+.+.+...
T Consensus       152 ~g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        152 RGRGIEALKLAIDRHQA  168 (772)
T ss_pred             cCCCHHHHHHHHHHhhh
Confidence            99999999999988753

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.80  E-value=6.4e-19  Score=149.20  Aligned_cols=160  Identities=19%  Similarity=0.343  Sum_probs=107.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeee-----------------eecCCCCceeeeEEEEEe--eCCccEEEEeCCCcc
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVA-----------------AVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLM  198 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~-----------------~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~  198 (322)
                      +..+|+++|..++|||||+++|+.....                 ......+.|.......+.  ..+..+.++||||..
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4578999999999999999999853211                 011123455555555555  678899999999985


Q ss_pred             cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh--hHH
Q 020714          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDL  276 (322)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~--~~~  276 (322)
                      .+            .......+..+|++|+|+|+..+...+.......+...      +.|+++|+||+|+...+  ...
T Consensus        82 ~f------------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~------~~p~ivvlNK~D~~~~~~~~~~  143 (188)
T PF00009_consen   82 DF------------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL------GIPIIVVLNKMDLIEKELEEII  143 (188)
T ss_dssp             HH------------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT------T-SEEEEEETCTSSHHHHHHHH
T ss_pred             ce------------eecccceecccccceeeeeccccccccccccccccccc------ccceEEeeeeccchhhhHHHHH
Confidence            32            33444557788999999999876544444444444433      35699999999998321  122


Q ss_pred             HHHHHHHhcCC---C--CCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          277 LKVAEQFKHLP---G--YERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       277 ~~~~~~~~~~~---~--~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      ++....+.+..   +  ..+++++||++|.|+++|++.|.+.++
T Consensus       144 ~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  144 EEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            22222332111   1  347999999999999999999998875

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.80  E-value=2.3e-18  Score=150.46  Aligned_cols=161  Identities=20%  Similarity=0.303  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|+||+|||||+|+|++... .++..+++|.....+.+...+..+.+|||||+.......     .......+..+
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~-----~~~~~~~l~~~   75 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG-----KGRGRQVIAVA   75 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccc-----hhHHHHHHHhh
Confidence            589999999999999999998763 356667788777777676778899999999986543211     11223345668


Q ss_pred             ccccEEEEEEeCCCCCCC-------------------------------------------cHHHHHHHHHHhcccC---
Q 020714          221 NLFEVLMVVFDVHRHLTS-------------------------------------------PDSRVIRLIERMGKQA---  254 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~-------------------------------------------~~~~~~~~l~~~~~~~---  254 (322)
                      +.+|++++|+|+++....                                           ....+...+++++...   
T Consensus        76 ~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v  155 (233)
T cd01896          76 RTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADV  155 (233)
T ss_pred             ccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEE
Confidence            899999999998653210                                           0122333444443221   


Q ss_pred             ------------------CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          255 ------------------PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       255 ------------------~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                                        ..-.|+++|+||+|+....+ ..    .+...   .+++++||++|.|++++++.|.+.+-
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~-~~----~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         156 LIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE-LD----LLARQ---PNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             EEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH-HH----HHhcC---CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence                              11268999999999975422 21    23332   35899999999999999999998763

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.80  E-value=1.6e-19  Score=140.31  Aligned_cols=163  Identities=19%  Similarity=0.191  Sum_probs=119.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ++.+|+|.||||||+|+-++....+.... ...|.........+......++||||+|.+.|..      +      +-.
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt------i------tst   76 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT------I------TST   76 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH------H------HHH
Confidence            45679999999999999998876443211 1111111111111223345789999999875421      1      113


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .++..+++++|+|++++.++  ..+..||+++..+. +.+|-++|+||.|....+.+..+....++...+. ++|++||+
T Consensus        77 yyrgthgv~vVYDVTn~ESF--~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi-e~FETSaK  152 (198)
T KOG0079|consen   77 YYRGTHGVIVVYDVTNGESF--NNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI-ELFETSAK  152 (198)
T ss_pred             HccCCceEEEEEECcchhhh--HhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCc-hheehhhh
Confidence            56888999999999875544  45889999988654 4789999999999998877777778888887777 59999999


Q ss_pred             CCCCHHHHHHHHHHHhhhcC
Q 020714          299 KGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~~~~  318 (322)
                      ...|++..|.-|.+.+...+
T Consensus       153 e~~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  153 ENENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             hcccchHHHHHHHHHHHHHH
Confidence            99999999999988876643

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.80  E-value=2.8e-19  Score=141.27  Aligned_cols=164  Identities=19%  Similarity=0.232  Sum_probs=122.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..++.+++|.+-||||+|+..++.++++..+. +-|+........+.. ...++++|||+|++.+..      +      
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrs------i------   74 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRS------I------   74 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHH------H------
Confidence            35789999999999999999999988876552 223222211111211 235679999999986532      1      


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCc-EEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQK-RVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p-~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                      +..+++++-++++|+|++++.+.  +.+..|+++.... ..|.++ +++|+.|+||...+++..++.+.++...+.. ++
T Consensus        75 tksyyrnsvgvllvyditnr~sf--ehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-FV  151 (213)
T KOG0091|consen   75 TKSYYRNSVGVLLVYDITNRESF--EHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-FV  151 (213)
T ss_pred             HHHHhhcccceEEEEeccchhhH--HHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCce-EE
Confidence            12456788899999999887655  4466777765533 235544 5799999999998888888999999999985 99


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhh
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++||++|.|+++.|+.|.+.+..
T Consensus       152 ETSak~g~NVeEAF~mlaqeIf~  174 (213)
T KOG0091|consen  152 ETSAKNGCNVEEAFDMLAQEIFQ  174 (213)
T ss_pred             EecccCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999888765

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.1e-18  Score=136.30  Aligned_cols=163  Identities=18%  Similarity=0.203  Sum_probs=121.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      -+|++++|+.|.|||+|+-++...++.. ++...|+.........-....++++|||+|++.|..          +  +.
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRS----------V--tR   76 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRS----------V--TR   76 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHH----------H--HH
Confidence            5789999999999999999998766543 222233332222111112235789999999976421          1  12


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      .+++.|.+.++|+|++++.  ....+..|+........+++-+++++||.||...+++...+...|++.+.. -+.++||
T Consensus        77 sYYRGAAGAlLVYD~Tsrd--sfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel-~flETSa  153 (214)
T KOG0086|consen   77 SYYRGAAGALLVYDITSRD--SFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLETSA  153 (214)
T ss_pred             HHhccccceEEEEeccchh--hHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccce-eeeeecc
Confidence            4578999999999997643  335678899888887778888999999999998888888888888887766 4899999


Q ss_pred             CCCCCHHHHHHHHHHHhhh
Q 020714          298 LKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~  316 (322)
                      ++|+|++|.|-...+.+..
T Consensus       154 ~TGeNVEEaFl~c~~tIl~  172 (214)
T KOG0086|consen  154 LTGENVEEAFLKCARTILN  172 (214)
T ss_pred             cccccHHHHHHHHHHHHHH
Confidence            9999999999776665543

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.79  E-value=4.1e-18  Score=142.56  Aligned_cols=158  Identities=16%  Similarity=0.235  Sum_probs=108.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+..+|+++|.+|+||||++++|.......+.++.|..    ...+...+..+.+||.+|......             .
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~----~~~i~~~~~~~~~~d~gG~~~~~~-------------~   74 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN----IEEIKYKGYSLTIWDLGGQESFRP-------------L   74 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE----EEEEEETTEEEEEEEESSSGGGGG-------------G
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccccCcccccc----cceeeeCcEEEEEEeccccccccc-------------c
Confidence            67899999999999999999999987665544433332    233446788999999999864322             2


Q ss_pred             H-hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH--hcCC--CCC
Q 020714          217 W-SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLP--GYE  290 (322)
Q Consensus       217 ~-~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~--~~~~--~~~  290 (322)
                      | ..+..+|++|+|+|.++..  ........+..+ ......+.|+++++||+|+..... ..+....+  ....  ...
T Consensus        75 w~~y~~~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~-~~~i~~~l~l~~l~~~~~~  151 (175)
T PF00025_consen   75 WKSYFQNADGIIFVVDSSDPE--RLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS-EEEIKEYLGLEKLKNKRPW  151 (175)
T ss_dssp             GGGGHTTESEEEEEEETTGGG--GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST-HHHHHHHTTGGGTTSSSCE
T ss_pred             ceeeccccceeEEEEecccce--eecccccchhhhcchhhcccceEEEEeccccccCcch-hhHHHhhhhhhhcccCCce
Confidence            2 3467889999999997643  222333444443 333345789999999999876432 22222222  2221  222


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHh
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      .++.|||.+|+|+.+.++||.+.+
T Consensus       152 ~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  152 SVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EEEeeeccCCcCHHHHHHHHHhcC
Confidence            589999999999999999998864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.78  E-value=1.6e-18  Score=149.04  Aligned_cols=149  Identities=17%  Similarity=0.237  Sum_probs=97.7

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeee------------------------------cCCCCceeeeEEEEEeeCCccEE
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAV------------------------------SRKTNTTTHEVLGVMTKADTQIC  190 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~~~  190 (322)
                      +|+++|.+|+|||||+++|+...-...                              ....|+|.+.....+...+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            489999999999999999875321111                              11256777777666767788999


Q ss_pred             EEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714          191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (322)
Q Consensus       191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~  270 (322)
                      |+||||+..+            .......+..+|++++|+|++.+..........++...+     ..++|+|+||+|+.
T Consensus        81 liDTpG~~~~------------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~-----~~~iIvviNK~D~~  143 (208)
T cd04166          81 IADTPGHEQY------------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLG-----IRHVVVAVNKMDLV  143 (208)
T ss_pred             EEECCcHHHH------------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcC-----CCcEEEEEEchhcc
Confidence            9999997532            122334567889999999998765444333334443332     13478899999997


Q ss_pred             CChh-HH---HHHHHHHhcCCCC--CcEEEeecCCCCCHHHH
Q 020714          271 TKKK-DL---LKVAEQFKHLPGY--ERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       271 ~~~~-~~---~~~~~~~~~~~~~--~~~~~iSa~~g~gi~el  306 (322)
                      .... ..   ......+....+.  .+++++||++|.|+++.
T Consensus       144 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         144 DYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            5322 11   1222333333332  35899999999999764

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.78  E-value=5.7e-18  Score=138.08  Aligned_cols=153  Identities=14%  Similarity=0.153  Sum_probs=95.8

Q ss_pred             EEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcc
Q 020714          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN  221 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~  221 (322)
                      |+++|++|||||||+|+|.+..+... ..+.......  ....++..+.+|||||...+.         .   .....+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~-~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~---------~---~~~~~~~   66 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSED-TIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFR---------S---MWERYCR   66 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcC-ccCCCCcceE--EEEECCEEEEEEECCCCHhHH---------H---HHHHHHh
Confidence            78999999999999999998765321 1222211111  233456778999999975321         1   1123457


Q ss_pred             cccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh--cC-CCCCcEEEeec
Q 020714          222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HL-PGYERIFMTSG  297 (322)
Q Consensus       222 ~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~--~~-~~~~~~~~iSa  297 (322)
                      .+|++++|+|++...+.  .....++..+. .....+.|+++|+||+|+..... .......+.  .. ....+++++|+
T Consensus        67 ~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa  143 (159)
T cd04159          67 GVNAIVYVVDAADRTAL--EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS-VDELIEQMNLKSITDREVSCYSISC  143 (159)
T ss_pred             cCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC-HHHHHHHhCcccccCCceEEEEEEe
Confidence            78999999999653211  12223333332 22234678999999999876432 222222221  11 11236899999


Q ss_pred             CCCCCHHHHHHHHHH
Q 020714          298 LKGAGLKALTQYLME  312 (322)
Q Consensus       298 ~~g~gi~el~~~i~~  312 (322)
                      ++|.|+++++++|.+
T Consensus       144 ~~~~gi~~l~~~l~~  158 (159)
T cd04159         144 KEKTNIDIVLDWLIK  158 (159)
T ss_pred             ccCCChHHHHHHHhh
Confidence            999999999999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.78  E-value=2.4e-17  Score=135.73  Aligned_cols=164  Identities=20%  Similarity=0.279  Sum_probs=105.8

Q ss_pred             EEEEcCCCCchhHHHHHHhC-CeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCC-ChhhHHHHHHHHHhh
Q 020714          142 VGIIGAPNAGKSSIINYMVG-TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY-SHKDVKVRVESAWSA  219 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~~  219 (322)
                      |+++|.+|+|||||+|.+.+ ......+...+.|......   .....+.++||||+....... ............+..
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~   78 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF---NVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN   78 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE---EccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence            78999999999999999994 3444556666666544332   223388999999986432211 111122223333333


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH---HHHHHHHhcCCCCCcEEEee
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ....+++++++|...........+..++...+      .|+++|+||+|+.......   ......+.......+++++|
T Consensus        79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~------~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  152 (170)
T cd01876          79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELG------IPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS  152 (170)
T ss_pred             ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcC------CCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence            45668899999997654444445556665543      5699999999996543211   12222222133445799999


Q ss_pred             cCCCCCHHHHHHHHHHHh
Q 020714          297 GLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l  314 (322)
                      |+++.|+.+++++|.+.+
T Consensus       153 a~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         153 SLKGQGIDELRALIEKWL  170 (170)
T ss_pred             cCCCCCHHHHHHHHHHhC
Confidence            999999999999998763

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.78  E-value=4.7e-18  Score=166.49  Aligned_cols=154  Identities=21%  Similarity=0.249  Sum_probs=109.5

Q ss_pred             cCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccE
Q 020714          146 GAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEV  225 (322)
Q Consensus       146 G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~  225 (322)
                      |.||||||||+|++++... .+++.+|+|.+.....+...+..+.+|||||+..+.....    .+.+.+.+.....+|+
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~----~e~v~~~~l~~~~aDv   75 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL----EEEVARDYLLNEKPDL   75 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch----HHHHHHHHHhhcCCCE
Confidence            8999999999999998764 6778899998887777767778899999999976543221    1222333333457899


Q ss_pred             EEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHH
Q 020714          226 LMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA  305 (322)
Q Consensus       226 ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~e  305 (322)
                      +++|+|+++.  +  . ...+..++...   +.|+++|+||+|+....... ...+.+.+..+. +++++||++|+|+++
T Consensus        76 vI~VvDat~l--e--r-~l~l~~ql~~~---~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~-pvv~tSA~tg~Gi~e  145 (591)
T TIGR00437        76 VVNVVDASNL--E--R-NLYLTLQLLEL---GIPMILALNLVDEAEKKGIR-IDEEKLEERLGV-PVVPTSATEGRGIER  145 (591)
T ss_pred             EEEEecCCcc--h--h-hHHHHHHHHhc---CCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCC-CEEEEECCCCCCHHH
Confidence            9999999652  1  1 12222222222   57899999999986543222 223455555565 699999999999999


Q ss_pred             HHHHHHHHh
Q 020714          306 LTQYLMEQF  314 (322)
Q Consensus       306 l~~~i~~~l  314 (322)
                      +++++.+..
T Consensus       146 L~~~i~~~~  154 (591)
T TIGR00437       146 LKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHh
Confidence            999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.77  E-value=4.6e-18  Score=141.33  Aligned_cols=143  Identities=22%  Similarity=0.293  Sum_probs=95.7

Q ss_pred             ceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeeccccchhhhhHHHH
Q 020714           47 DSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEE  105 (322)
Q Consensus        47 d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~~~~~~~~~~~~~~  105 (322)
                      |+++++.|||.|... +                    ||+|+++++....|..+|.+....+.|.+..+.....+.....
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV   80 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence            678888888887655 2                    8999999999999999999998888887764433222211000


Q ss_pred             --------HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeee
Q 020714          106 --------EERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE  177 (322)
Q Consensus       106 --------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~  177 (322)
                              ............+...++..     ..+......++++++|.||||||||+|+|++...+.++..+|+|+..
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~  155 (172)
T cd04178          81 KVEAASADLLRSSVCFGADCLLKLLKNY-----SRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM  155 (172)
T ss_pred             ccchhhhhhhhhccccCHHHHHHHHHHH-----hhccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce
Confidence                    00000000000111111000     01122345689999999999999999999999988999999999987


Q ss_pred             EEEEEeeCCccEEEEeCCCc
Q 020714          178 VLGVMTKADTQICIFDTPGL  197 (322)
Q Consensus       178 ~~~~~~~~~~~~~l~DtpG~  197 (322)
                      +....   +..+.++||||+
T Consensus       156 ~~~~~---~~~~~l~DtPGi  172 (172)
T cd04178         156 QEVHL---DKKVKLLDSPGI  172 (172)
T ss_pred             EEEEe---CCCEEEEECcCC
Confidence            65432   357899999996

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.77  E-value=9.4e-18  Score=146.83  Aligned_cols=225  Identities=19%  Similarity=0.255  Sum_probs=146.4

Q ss_pred             CCCCCCChhhHHHHHHhhCCeEEEeeccccchhhhhHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHH-hhhhccCceEE
Q 020714           66 NNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRAL--AKALLQAALERQEEEEEE-VKEEDQKSVAV  142 (322)
Q Consensus        66 dl~~~~~~~~w~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~~~~~~~~v  142 (322)
                      +++-......|...++..+..+ .-+    |.+.+-...     ++.+  ....+...|+...+.... ..........|
T Consensus       112 py~~~rl~r~~~hl~r~~g~~v-~gs----ges~id~d~-----~rllr~kea~lrKeL~~vrrkr~~r~gr~~~s~pvi  181 (410)
T KOG0410|consen  112 PYVGGRLERELQHLRRQSGGQV-KGS----GESIIDRDI-----RRLLRIKEAQLRKELQRVRRKRQRRVGREGESSPVI  181 (410)
T ss_pred             ccccchHHHHHHHHHhcCCCcc-cCc----cchHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCceE
Confidence            3677888999999999888763 111    111110000     0111  112222222221111111 12233445678


Q ss_pred             EEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEE-EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcc
Q 020714          143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN  221 (322)
Q Consensus       143 ~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~  221 (322)
                      .+||++|+||||||++|++... ........|.+++... -...|..+.+.||-||....+    ....+.|..+++++.
T Consensus       182 avVGYTNaGKsTLikaLT~Aal-~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP----~~LvaAF~ATLeeVa  256 (410)
T KOG0410|consen  182 AVVGYTNAGKSTLIKALTKAAL-YPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLP----IQLVAAFQATLEEVA  256 (410)
T ss_pred             EEEeecCccHHHHHHHHHhhhc-CccchhheeccchhhhccCCCCcEEEEeechhhhhhCc----HHHHHHHHHHHHHHh
Confidence            9999999999999999995332 2333334444443332 235678889999999987655    667788999999999


Q ss_pred             cccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCC-CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          222 LFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPP-KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       222 ~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~-~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      .+|++++|.|++++.-+.. +.+...+..++....+ ...++-|.||+|..+.....+        .+   ..+.+||++
T Consensus       257 eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n---~~v~isalt  325 (410)
T KOG0410|consen  257 EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KN---LDVGISALT  325 (410)
T ss_pred             hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------cC---Ccccccccc
Confidence            9999999999988754433 4777788888764332 355788999999876532211        11   158999999


Q ss_pred             CCCHHHHHHHHHHHhhh
Q 020714          300 GAGLKALTQYLMEQFKD  316 (322)
Q Consensus       300 g~gi~el~~~i~~~l~~  316 (322)
                      |+|++++.+.+...+..
T Consensus       326 gdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  326 GDGLEELLKAEETKVAS  342 (410)
T ss_pred             CccHHHHHHHHHHHhhh
Confidence            99999999999887654

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.77  E-value=4.1e-18  Score=148.89  Aligned_cols=168  Identities=25%  Similarity=0.322  Sum_probs=117.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc-cEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      +....+++||.||+|||||+|+|...+- .++..+.||..+..+....++. .+.+-|.||+++.....  ..   .-..
T Consensus       194 KsiadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n--kG---lG~~  267 (366)
T KOG1489|consen  194 KSIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN--KG---LGYK  267 (366)
T ss_pred             eeecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCcccccccccc--Cc---ccHH
Confidence            4455689999999999999999998764 6788888998888877666544 49999999998754311  11   1123


Q ss_pred             HHhhcccccEEEEEEeCCCCCC-CcHHHHHHHHHHhcc--cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLT-SPDSRVIRLIERMGK--QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~-~~~~~~~~~l~~~~~--~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                      .+..+..|+.+++|+|.+.... .+...+..+..++..  ....+.|.++|+||+|+.+.+...   .+.+......+.+
T Consensus       268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l~~L~~~lq~~~V  344 (366)
T KOG1489|consen  268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---LSSLAKRLQNPHV  344 (366)
T ss_pred             HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---HHHHHHHcCCCcE
Confidence            3456778899999999976521 222333333333332  233468899999999997544333   2333333333359


Q ss_pred             EEeecCCCCCHHHHHHHHHHH
Q 020714          293 FMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~  313 (322)
                      +++||++|+|+.++++.|.+.
T Consensus       345 ~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  345 VPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             EEeeeccccchHHHHHHHhhc
Confidence            999999999999999988764

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.77  E-value=9.5e-19  Score=137.54  Aligned_cols=165  Identities=15%  Similarity=0.159  Sum_probs=122.8

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeec----CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK  210 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~  210 (322)
                      ...-.|+++++|..-||||||+-++...++....    .....++...   +......+.||||+|++.|...-|     
T Consensus         9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n---~ed~ra~L~IWDTAGQErfHALGP-----   80 (218)
T KOG0088|consen    9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVN---VEDCRADLHIWDTAGQERFHALGP-----   80 (218)
T ss_pred             CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccc---cccceeeeeeeeccchHhhhccCc-----
Confidence            3445789999999999999999888876553211    0111111111   112345678999999987754332     


Q ss_pred             HHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCC
Q 020714          211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE  290 (322)
Q Consensus       211 ~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~  290 (322)
                             -+++.++++++|||++++.++  ..+..|+.++........-+++|+||+||...+.+..+....++..-|. 
T Consensus        81 -------IYYRgSnGalLVyDITDrdSF--qKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA-  150 (218)
T KOG0088|consen   81 -------IYYRGSNGALLVYDITDRDSF--QKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGA-  150 (218)
T ss_pred             -------eEEeCCCceEEEEeccchHHH--HHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhch-
Confidence                   357889999999999775433  5688888888766555567899999999988777777777777776666 


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      .++++||+.+.||.|+|+.+...+.++
T Consensus       151 ~y~eTSAk~N~Gi~elFe~Lt~~MiE~  177 (218)
T KOG0088|consen  151 LYMETSAKDNVGISELFESLTAKMIEH  177 (218)
T ss_pred             hheecccccccCHHHHHHHHHHHHHHH
Confidence            599999999999999999999888775

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=99.77  E-value=8e-19  Score=161.93  Aligned_cols=157  Identities=27%  Similarity=0.408  Sum_probs=106.1

Q ss_pred             CCceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeec-c--ccchhhh
Q 020714           45 DCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-A--QKGKLRI  100 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~--~~~~~~~  100 (322)
                      .+|+|+.+.|||-|+++ +                    ||+||.+++...+|..||.+.+-.++|-++ .  ..+-...
T Consensus       174 rSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~  253 (562)
T KOG1424|consen  174 RSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKV  253 (562)
T ss_pred             hcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccc
Confidence            79999999999999999 4                    899999999999999999999988888777 2  2222222


Q ss_pred             hHHHHHHHHHHHHHHH-HH----HHHHHhhH---HH---HHHh------h-----hhccCceEEEEEcCCCCchhHHHHH
Q 020714          101 FQEEEEERKHRALAKA-LL----QAALERQE---EE---EEEV------K-----EEDQKSVAVGIIGAPNAGKSSIINY  158 (322)
Q Consensus       101 ~~~~~~~~~~~~~~~~-~~----~~~l~~~~---~~---~~~~------~-----~~~~~~~~v~v~G~~~vGKStlin~  158 (322)
                      +++..+..+.-..... +.    ...+.+..   .+   ....      .     +..+..+.|++||+|||||||+||+
T Consensus       254 ~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINa  333 (562)
T KOG1424|consen  254 LKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINA  333 (562)
T ss_pred             hhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHH
Confidence            2211100000000000 00    00000000   00   0000      0     1122258999999999999999999


Q ss_pred             HhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCC
Q 020714          159 MVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY  204 (322)
Q Consensus       159 l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~  204 (322)
                      |.|.+...++.+||.|++.++..+   ...+.|+||||++.+....
T Consensus       334 LvG~KkVsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfPSf~~  376 (562)
T KOG1424|consen  334 LVGRKKVSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFPSFSP  376 (562)
T ss_pred             HhcCceeeeecCCCCcceeEEEEc---CCCceecCCCCccccCCCc
Confidence            999999999999999999888654   3567999999999765533

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.76  E-value=1.1e-17  Score=160.35  Aligned_cols=164  Identities=20%  Similarity=0.283  Sum_probs=124.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      .+|+++|.||||||||.|+|+|.+ ..+++-||+|.....+.+...+..+.++|.||.-........    +.+.+-+-.
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D----E~Var~~ll   78 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED----EKVARDFLL   78 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch----HHHHHHHHh
Confidence            459999999999999999999976 468999999999999999999999999999999765553332    233443344


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      -...|+++.|+|+++    -+..+.-.++-+..    +.|+++++|++|....... .-..+.+.+..|. |++++||++
T Consensus        79 ~~~~D~ivnVvDAtn----LeRnLyltlQLlE~----g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGv-PVv~tvA~~  148 (653)
T COG0370          79 EGKPDLIVNVVDATN----LERNLYLTLQLLEL----GIPMILALNMIDEAKKRGI-RIDIEKLSKLLGV-PVVPTVAKR  148 (653)
T ss_pred             cCCCCEEEEEcccch----HHHHHHHHHHHHHc----CCCeEEEeccHhhHHhcCC-cccHHHHHHHhCC-CEEEEEeec
Confidence            567799999999954    33333333333332    3569999999998765432 1223455555677 699999999


Q ss_pred             CCCHHHHHHHHHHHhhhcC
Q 020714          300 GAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       300 g~gi~el~~~i~~~l~~~~  318 (322)
                      |.|++++.+.+.+....+.
T Consensus       149 g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         149 GEGLEELKRAIIELAESKT  167 (653)
T ss_pred             CCCHHHHHHHHHHhccccc
Confidence            9999999999998776554

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.76  E-value=1e-17  Score=148.14  Aligned_cols=171  Identities=25%  Similarity=0.378  Sum_probs=124.9

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-CCccEEEEeCCCcccCCC-CCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~-~~~~~~~~~~~~~~~  217 (322)
                      --|++||.||+||||||+.++..+ +.+...+.||..+..+++.. .+..+++-|.||+++... +.+.      =.+.+
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GL------G~~FL  232 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGL------GLRFL  232 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCc------cHHHH
Confidence            348999999999999999998765 56788899999988888764 466799999999986543 1111      12344


Q ss_pred             hhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhccc--CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          218 SAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQ--APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~--~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ..+..|.++++|+|++... ..+.........++...  ...++|.++|+||+|+....+..+.....+....+....++
T Consensus       233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~  312 (369)
T COG0536         233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL  312 (369)
T ss_pred             HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee
Confidence            5677889999999997432 22223333333333322  23368899999999988877778777777776555443344


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||.+++|+++|...+.+.+...
T Consensus       313 ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         313 ISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             eehhcccCHHHHHHHHHHHHHHh
Confidence            99999999999999999888764

>cd01856 YlqF YlqF

Probab=99.76  E-value=5e-18  Score=141.53  Aligned_cols=153  Identities=24%  Similarity=0.378  Sum_probs=112.5

Q ss_pred             HHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCChhhHHHHHHhhCCeE
Q 020714           25 LFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQEPTWDEKYRERTDRI   87 (322)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~~~~w~~~~~~~~~~i   87 (322)
                      ||.+||.++..+.-.  ..+.+|+++.+.|++.|... +                ||+|+.+++....|..++...+..+
T Consensus         1 ~~~~~~~~~~~~~~~--~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~v   78 (171)
T cd01856           1 WFPGHMAKALRQIKE--KLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKV   78 (171)
T ss_pred             CCchHHHHHHHHHHH--HHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeE
Confidence            789999999988855  66689999999999887654 1                7999987666677988888877778


Q ss_pred             EEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeee
Q 020714           88 VFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA  166 (322)
Q Consensus        88 ~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~  166 (322)
                      ++.++ ++.+...+.+..              ...+......  .........++++++|.+|||||||+|+|.+.....
T Consensus        79 i~iSa~~~~gi~~L~~~l--------------~~~l~~~~~~--~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~  142 (171)
T cd01856          79 LFVNAKSGKGVKKLLKAA--------------KKLLKDIEKL--KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAK  142 (171)
T ss_pred             EEEECCCcccHHHHHHHH--------------HHHHHHHhhh--hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCcee
Confidence            88888 777777662211              1111100000  011223456899999999999999999999988778


Q ss_pred             ecCCCCceeeeEEEEEeeCCccEEEEeCCCcc
Q 020714          167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLM  198 (322)
Q Consensus       167 ~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~  198 (322)
                      ++..+++|...+.....   ..+.++||||+.
T Consensus       143 ~~~~~~~T~~~~~~~~~---~~~~~iDtpG~~  171 (171)
T cd01856         143 VGNKPGVTKGIQWIKIS---PGIYLLDTPGIL  171 (171)
T ss_pred             ecCCCCEEeeeEEEEec---CCEEEEECCCCC
Confidence            88888988887654332   568999999973

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.75  E-value=2.8e-17  Score=140.89  Aligned_cols=160  Identities=17%  Similarity=0.275  Sum_probs=95.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeee--eecCCCCceeeeEEEEEe---------------------------eCC----
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVMT---------------------------KAD----  186 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~--~~~~~~~~t~~~~~~~~~---------------------------~~~----  186 (322)
                      ++|+++|..|+|||||+.+|.+....  .....-+.+.......+.                           ..+    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            36899999999999999999754110  000000111000000000                           002    


Q ss_pred             --ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          187 --TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       187 --~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                        ..+.||||||...            ....++..+..+|++++|+|+..+. ..+.......+...+     ..|+++|
T Consensus        81 ~~~~i~~iDtPG~~~------------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~-----~~~iiiv  143 (203)
T cd01888          81 LVRHVSFVDCPGHEI------------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG-----LKHIIIV  143 (203)
T ss_pred             cccEEEEEECCChHH------------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC-----CCcEEEE
Confidence              5789999999642            2345556677889999999997642 222222223332222     2368999


Q ss_pred             EeCCCCCCChhH--HHHHHHHHhcCC--CCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          264 MNKVDLVTKKKD--LLKVAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       264 ~NK~Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +||+|+......  ..+....+....  ...+++++||++|.|+++|+++|.+.+..
T Consensus       144 vNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         144 QNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             EEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            999999753221  112222222211  12369999999999999999999987754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.75  E-value=4.2e-17  Score=138.74  Aligned_cols=148  Identities=17%  Similarity=0.214  Sum_probs=92.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC--Ceeeee-------------cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG--TKVAAV-------------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY  204 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~--~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~  204 (322)
                      -+|+++|.+|||||||+++|++  ..+...             ....|+|.......+...+..+.+|||||+..+.   
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~---   79 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG---   79 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence            3699999999999999999986  222111             1123444444444455667889999999986431   


Q ss_pred             ChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHHHH
Q 020714          205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQ  282 (322)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~~~  282 (322)
                               ......+..+|++++|+|++++....   ...++..+...   +.|+++|+||+|+.....  ...+....
T Consensus        80 ---------~~~~~~~~~~d~~ilV~d~~~~~~~~---~~~~~~~~~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~  144 (194)
T cd01891          80 ---------GEVERVLSMVDGVLLLVDASEGPMPQ---TRFVLKKALEL---GLKPIVVINKIDRPDARPEEVVDEVFDL  144 (194)
T ss_pred             ---------HHHHHHHHhcCEEEEEEECCCCccHH---HHHHHHHHHHc---CCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence                     11223467889999999997643222   22223333222   467999999999975432  12222222


Q ss_pred             Hhc------CCCCCcEEEeecCCCCCHHHH
Q 020714          283 FKH------LPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       283 ~~~------~~~~~~~~~iSa~~g~gi~el  306 (322)
                      +..      ..+. +++++||++|.|+.++
T Consensus       145 ~~~~~~~~~~~~~-~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         145 FIELGATEEQLDF-PVLYASAKNGWASLNL  173 (194)
T ss_pred             HHHhCCccccCcc-CEEEeehhcccccccc
Confidence            211      1233 6999999999877544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.75  E-value=3.3e-17  Score=160.42  Aligned_cols=159  Identities=16%  Similarity=0.253  Sum_probs=108.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeee--eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +.|+++|.+|+|||||+++|++....  ......|.|.+.....+...+..+.+|||||...+            ...+.
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f------------~~~~~   68 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF------------ISNAI   68 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH------------HHHHH
Confidence            36899999999999999999975421  11233566666554445556678999999997532            34455


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChh--HHHHHHHHHhcCCC---CCc
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKK--DLLKVAEQFKHLPG---YER  291 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~--~~~~~~~~~~~~~~---~~~  291 (322)
                      ..+..+|++++|+|++++...+......++..+      +.| +++|+||+|+.+...  ........+....+   ..+
T Consensus        69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~  142 (581)
T TIGR00475        69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAK  142 (581)
T ss_pred             hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence            667889999999999875433333333333332      345 999999999986432  12222333322221   347


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++++||++|.|+++++++|...+..
T Consensus       143 ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       143 IFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             EEEEeCCCCCCchhHHHHHHHHHHh
Confidence            9999999999999999999887654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.75  E-value=4.4e-17  Score=138.41  Aligned_cols=147  Identities=18%  Similarity=0.197  Sum_probs=98.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCe------e---------eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTK------V---------AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG  203 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~------~---------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~  203 (322)
                      .++|+++|.+++|||||+++|++..      .         .......|.|.+.....+...+..+.++||||+..    
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----   77 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----   77 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH----
Confidence            4689999999999999999997531      0         01112446666665555556677899999999853    


Q ss_pred             CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHH---HH
Q 020714          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLL---KV  279 (322)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~---~~  279 (322)
                              ....+...+..+|++++|+|+..+...+.......+...+      .| +|+|+||+|+.......+   ..
T Consensus        78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~------~~~iIvviNK~D~~~~~~~~~~~~~~  143 (195)
T cd01884          78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG------VPYIVVFLNKADMVDDEELLELVEME  143 (195)
T ss_pred             --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCcEEEEEeCCCCCCcHHHHHHHHHH
Confidence                    2344556677899999999998765555445555555443      34 789999999975332222   12


Q ss_pred             HHHHhcCCC----CCcEEEeecCCCCCH
Q 020714          280 AEQFKHLPG----YERIFMTSGLKGAGL  303 (322)
Q Consensus       280 ~~~~~~~~~----~~~~~~iSa~~g~gi  303 (322)
                      ...+....+    ..+++++||++|.|+
T Consensus       144 i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         144 VRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHHHHHhcccccCCeEEEeeCccccCC
Confidence            222222222    257999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=99.75  E-value=2.1e-19  Score=160.52  Aligned_cols=132  Identities=26%  Similarity=0.292  Sum_probs=106.8

Q ss_pred             CCceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeec--cccchhhhh
Q 020714           45 DCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE--AQKGKLRIF  101 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~--~~~~~~~~~  101 (322)
                      .+|||+.|.|||.|..+ +                    ||+||++...++.|...+....+++.|..+  ..-|+..+ 
T Consensus       213 SSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKgal-  291 (572)
T KOG2423|consen  213 SSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKGAL-  291 (572)
T ss_pred             ccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchhHH-
Confidence            79999999999999999 4                    899999999999999999999999988887  55566666 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEE
Q 020714          102 QEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV  181 (322)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~  181 (322)
                               ..+.+++.+-..             .+..+.|+|+|+|||||||+||.|..+++|.+.+.+|-|..-+...
T Consensus       292 ---------I~llRQf~kLh~-------------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt  349 (572)
T KOG2423|consen  292 ---------IQLLRQFAKLHS-------------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT  349 (572)
T ss_pred             ---------HHHHHHHHhhcc-------------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH
Confidence                     223333322221             3356889999999999999999999999999999999887644321


Q ss_pred             EeeCCccEEEEeCCCcccCCC
Q 020714          182 MTKADTQICIFDTPGLMLNKS  202 (322)
Q Consensus       182 ~~~~~~~~~l~DtpG~~~~~~  202 (322)
                         --.+|+|+|+||+..+..
T Consensus       350 ---LmkrIfLIDcPGvVyps~  367 (572)
T KOG2423|consen  350 ---LMKRIFLIDCPGVVYPSS  367 (572)
T ss_pred             ---HHhceeEecCCCccCCCC
Confidence               135789999999986654

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.75  E-value=2.2e-17  Score=140.04  Aligned_cols=163  Identities=13%  Similarity=0.124  Sum_probs=116.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      +.++|+++|.+|||||+|+.++.+..+... .++.. +.......+......+.|+||+|..++..      +..     
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~------~~~-----   69 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSA------MRD-----   69 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChH------HHH-----
Confidence            357899999999999999999888766543 22222 22222222333345678999999654421      111     


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                       ..+...|++++||++++..+++..  ..+...+ ........|+++|+||+|+...+.+..+....++..+++. ++++
T Consensus        70 -~~~~~~~gF~lVysitd~~SF~~~--~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E~  145 (196)
T KOG0395|consen   70 -LYIRNGDGFLLVYSITDRSSFEEA--KQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIET  145 (196)
T ss_pred             -HhhccCcEEEEEEECCCHHHHHHH--HHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEEe
Confidence             235677999999999887666553  3333333 2222334799999999999887777777788888888886 9999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      ||+.+.+++++|..|.+.+..
T Consensus       146 Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  146 SAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             eccCCcCHHHHHHHHHHHHHh
Confidence            999999999999999998876

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.75  E-value=1.7e-17  Score=129.21  Aligned_cols=116  Identities=28%  Similarity=0.440  Sum_probs=86.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+|+|.+|+|||||+|+|++.....++..+++|...........+..+.++||||+.....   .......+..++..+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~---~~~~~~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGES---QDNDGKEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSH---HHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccch---hhHHHHHHHHHHHHH
Confidence            58999999999999999999987778889999999887666667788889999999875322   111112455677778


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK  266 (322)
                      ..+|++++|+|++....   ......++.+.    ...|+++|+||
T Consensus        78 ~~~d~ii~vv~~~~~~~---~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPIT---EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSH---HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCC---HHHHHHHHHHh----cCCCEEEEEcC
Confidence            99999999999755222   22334444443    25789999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.74  E-value=3.5e-17  Score=155.57  Aligned_cols=153  Identities=15%  Similarity=0.229  Sum_probs=102.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeee------------------------------eecCCCCceeeeEEEEEeeCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA------------------------------AVSRKTNTTTHEVLGVMTKAD  186 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~  186 (322)
                      +..++|+++|.+|+|||||+++|+...-.                              ......|+|.+.....+...+
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            35689999999999999999999842111                              011246888888877777778


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC--CCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR--HLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~--~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      ..+.||||||+..+.            ..+...+..+|++++|+|+++  +...+......++..++     ..|+++|+
T Consensus        84 ~~i~liDtpG~~~~~------------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivvi  146 (425)
T PRK12317         84 YYFTIVDCPGHRDFV------------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAI  146 (425)
T ss_pred             eEEEEEECCCcccch------------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEE
Confidence            899999999976432            122334577899999999976  43333333334444333     13589999


Q ss_pred             eCCCCCCChh-H---HHHHHHHHhcCCCC----CcEEEeecCCCCCHHHH
Q 020714          265 NKVDLVTKKK-D---LLKVAEQFKHLPGY----ERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       265 NK~Dl~~~~~-~---~~~~~~~~~~~~~~----~~~~~iSa~~g~gi~el  306 (322)
                      ||+|+..... .   ..+....+....++    .+++++||++|.|++++
T Consensus       147 NK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        147 NKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             EccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence            9999975322 1   12223333322332    36999999999999873

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.74  E-value=6.5e-17  Score=142.00  Aligned_cols=165  Identities=22%  Similarity=0.327  Sum_probs=120.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...-+|+++|+|+||||||+|.|++.+ ..++..+.||.....+.+...|..++++|+||+......-.     -.-++.
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~-----grG~~v  134 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR-----GRGRQV  134 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCC-----CCccee
Confidence            345689999999999999999999876 45677888999999999999999999999999986543111     011345


Q ss_pred             HhhcccccEEEEEEeCCCCCCC-------------------------------------------cHHHHHHHHHHhccc
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTS-------------------------------------------PDSRVIRLIERMGKQ  253 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~-------------------------------------------~~~~~~~~l~~~~~~  253 (322)
                      +..++.||++++|+|+......                                           ....+...+.+++..
T Consensus       135 lsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~  214 (365)
T COG1163         135 LSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIH  214 (365)
T ss_pred             eeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcc
Confidence            5678999999999999744321                                           112344444444432


Q ss_pred             CCC---------------------CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714          254 APP---------------------KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       254 ~~~---------------------~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~  312 (322)
                      +..                     =+|.++|+||+|+... +..+.    +.+.   ++++++||+.|.|+++|.+.|.+
T Consensus       215 nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-e~~~~----l~~~---~~~v~isa~~~~nld~L~e~i~~  286 (365)
T COG1163         215 NADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-EELER----LARK---PNSVPISAKKGINLDELKERIWD  286 (365)
T ss_pred             cceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-HHHHH----HHhc---cceEEEecccCCCHHHHHHHHHH
Confidence            111                     1688999999999873 33332    2222   26899999999999999999998


Q ss_pred             Hhh
Q 020714          313 QFK  315 (322)
Q Consensus       313 ~l~  315 (322)
                      .+.
T Consensus       287 ~L~  289 (365)
T COG1163         287 VLG  289 (365)
T ss_pred             hhC
Confidence            774

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=2.6e-17  Score=127.09  Aligned_cols=165  Identities=18%  Similarity=0.176  Sum_probs=123.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      -.++-+++|.-|||||+|+-.++.+++.. -....|+...+....+.....++++|||.|++.+..          +  +
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfra----------v--t   77 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA----------V--T   77 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHH----------H--H
Confidence            46788999999999999999998776532 222223333222222333345789999999875421          1  2


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ...++.+.+.++|+|+..+.+-  ..+..|+........|+..+++++||.|+...+.+..+..+.|++.+|.. ++++|
T Consensus        78 rsyyrgaagalmvyditrrsty--nhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~-fle~s  154 (215)
T KOG0097|consen   78 RSYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM-FLEAS  154 (215)
T ss_pred             HHHhccccceeEEEEehhhhhh--hhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE-EEEec
Confidence            2457888999999999775433  34667888888777788889999999999888888888889999988885 99999


Q ss_pred             cCCCCCHHHHHHHHHHHhhhc
Q 020714          297 GLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~~  317 (322)
                      |++|+++++.|-.-.+.+..+
T Consensus       155 aktg~nvedafle~akkiyqn  175 (215)
T KOG0097|consen  155 AKTGQNVEDAFLETAKKIYQN  175 (215)
T ss_pred             ccccCcHHHHHHHHHHHHHHh
Confidence            999999999987777766654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.74  E-value=5.3e-17  Score=138.35  Aligned_cols=173  Identities=15%  Similarity=0.163  Sum_probs=114.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHH-HHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK-VRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~-~~~~~~~  217 (322)
                      .+|+++|.||||||||+|.|++......+. ..++|...........+..+.++||||+.....  ...... ...+...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccC--ChHHHHHHHHHHHH
Confidence            369999999999999999999987654442 456777666655556788999999999986532  112222 2333333


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH-------HHHHHHHhcCCCCC
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL-------LKVAEQFKHLPGYE  290 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~-------~~~~~~~~~~~~~~  290 (322)
                      ......|++++|+++.+ .+..+......+..+-.... -.++++|+|++|........       ......+... +. 
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~-~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c-~~-  154 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKV-LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC-GG-  154 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHh-HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh-CC-
Confidence            44578899999999976 66666666666665422111 24689999999977542100       1111222221 11 


Q ss_pred             cEEEe-----ecCCCCCHHHHHHHHHHHhhhcC
Q 020714          291 RIFMT-----SGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       291 ~~~~i-----Sa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      .++..     |+..+.++++|++.|.+.+.+++
T Consensus       155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~  187 (196)
T cd01852         155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKENG  187 (196)
T ss_pred             eEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence            23333     36678999999999999999854

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.74  E-value=9.3e-17  Score=156.70  Aligned_cols=159  Identities=19%  Similarity=0.261  Sum_probs=103.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ..++++|+++|.+|+|||||+++|.+..+.. ...+|.|.+.....+...+ ..+.||||||+..+..      .   . 
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~------~---r-  152 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS------M---R-  152 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchhh------H---H-
Confidence            4577899999999999999999999876543 2334555443333333333 3899999999875421      1   1 


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-hHHHHHHHH---Hhc-CCCC
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQ---FKH-LPGY  289 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-~~~~~~~~~---~~~-~~~~  289 (322)
                        ...+..+|++++|+|++++...+...   .+.....   .+.|+++++||+|+.... .........   ... +.+.
T Consensus       153 --~rga~~aDiaILVVda~dgv~~qT~e---~i~~~~~---~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~  224 (587)
T TIGR00487       153 --ARGAKVTDIVVLVVAADDGVMPQTIE---AISHAKA---ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGD  224 (587)
T ss_pred             --HhhhccCCEEEEEEECCCCCCHhHHH---HHHHHHH---cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCC
Confidence              13467789999999997654333222   2222222   257899999999996532 112121111   111 1122


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHH
Q 020714          290 ERIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       290 ~~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      .+++++||++|+|+++++++|...
T Consensus       225 ~~~v~iSAktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       225 TIFVPVSALTGDGIDELLDMILLQ  248 (587)
T ss_pred             ceEEEEECCCCCChHHHHHhhhhh
Confidence            469999999999999999999753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.74  E-value=7.1e-17  Score=161.16  Aligned_cols=159  Identities=18%  Similarity=0.235  Sum_probs=105.7

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..+++.|+++|.+|+|||||+++|.+..+.. +...|.|.+.....+...+..+.||||||+..|..      +   .. 
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~-~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~------m---~~-  355 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAA-GEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA------M---RA-  355 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccc-cccCceeeeccEEEEEECCEEEEEEECCCCccchh------H---HH-
Confidence            5678999999999999999999998766542 23345554443333445577899999999875421      1   11 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHHHHH---Hhc-CCCCC
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQ---FKH-LPGYE  290 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~---~~~-~~~~~  290 (322)
                        ..+..+|++|+|+|+.++...+....   +.....   .+.|+|+|+||+|+..... ........   +.. +.+..
T Consensus       356 --rga~~aDiaILVVdAddGv~~qT~e~---i~~a~~---~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~v  427 (787)
T PRK05306        356 --RGAQVTDIVVLVVAADDGVMPQTIEA---INHAKA---AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDT  427 (787)
T ss_pred             --hhhhhCCEEEEEEECCCCCCHhHHHH---HHHHHh---cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCc
Confidence              23567899999999977643333222   222222   2578999999999965321 11111111   111 12234


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHH
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      +++++||++|.|+++|+++|...
T Consensus       428 p~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        428 IFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             eEEEEeCCCCCCchHHHHhhhhh
Confidence            79999999999999999999754

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.73  E-value=1.6e-16  Score=125.88  Aligned_cols=161  Identities=18%  Similarity=0.283  Sum_probs=114.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +.++|.++|..|+||||++++|.+.....+.+..|....    .....+..+.+||..|+..             +++.|
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Ik----tl~~~~~~L~iwDvGGq~~-------------lr~~W   77 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIK----TLEYKGYTLNIWDVGGQKT-------------LRSYW   77 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeE----EEEecceEEEEEEcCCcch-------------hHHHH
Confidence            478999999999999999999999886666665554433    3446788999999999863             34444


Q ss_pred             h-hcccccEEEEEEeCCCCCCCcHH--HHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh--hHHHH--HHHHHhcCCCCC
Q 020714          218 S-AVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLK--VAEQFKHLPGYE  290 (322)
Q Consensus       218 ~-~~~~ad~ii~v~D~s~~~~~~~~--~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~--~~~~~--~~~~~~~~~~~~  290 (322)
                      . ++..+|++|+|+|.++....++.  .+...+..   ....+.|++++.||.|+...-  ..+..  ....+.+..-. 
T Consensus        78 ~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~e---erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~-  153 (185)
T KOG0073|consen   78 KNYFESTDGLIWVVDSSDRMRMQECKQELTELLVE---ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW-  153 (185)
T ss_pred             HHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhh---hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc-
Confidence            4 35777999999999876555443  23333332   233357899999999998432  11111  12223222223 


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      +++.|||.+|+++.+-++|+.+.+..+.+
T Consensus       154 ~l~~cs~~tge~l~~gidWL~~~l~~r~~  182 (185)
T KOG0073|consen  154 RLVKCSAVTGEDLLEGIDWLCDDLMSRLF  182 (185)
T ss_pred             eEEEEeccccccHHHHHHHHHHHHHHHhc
Confidence            58999999999999999999998877544

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.73  E-value=4.7e-17  Score=130.71  Aligned_cols=151  Identities=20%  Similarity=0.195  Sum_probs=94.3

Q ss_pred             EEcCCCCchhHHHHHHhCCeee-eecCCCCceeeeEEEEEe--eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          144 IIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       144 v~G~~~vGKStlin~l~~~~~~-~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      ++|++|+|||||+|++.+.... .......  .........  ..+..+.+||+||......            .....+
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------------~~~~~~   66 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI--IDFYSKTIEVDGKKVKLQIWDTAGQERFRS------------LRRLYY   66 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch--hheeeEEEEECCEEEEEEEEecCChHHHHh------------HHHHHh
Confidence            5799999999999999987652 1111111  111111111  2356789999999764311            113456


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHH-HHHhcccCCCCCcEEEEEeCCCCCCChhHHHHH-HHHHhcCCCCCcEEEeecC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRL-IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV-AEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~-l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~iSa~  298 (322)
                      ..+|++++|+|++.......  ...+ ............|+++|+||+|+.......... ...... ....+++++|++
T Consensus        67 ~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~  143 (157)
T cd00882          67 RGADGIILVYDVTDRESFEN--VKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAK-ELGVPYFETSAK  143 (157)
T ss_pred             cCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHh-hcCCcEEEEecC
Confidence            78899999999976433222  2121 112222233468899999999997654332221 222222 334579999999


Q ss_pred             CCCCHHHHHHHHH
Q 020714          299 KGAGLKALTQYLM  311 (322)
Q Consensus       299 ~g~gi~el~~~i~  311 (322)
                      +|.|+++++++|.
T Consensus       144 ~~~~i~~~~~~l~  156 (157)
T cd00882         144 TGENVEELFEELA  156 (157)
T ss_pred             CCCChHHHHHHHh
Confidence            9999999999986

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.73  E-value=1e-18  Score=133.62  Aligned_cols=161  Identities=16%  Similarity=0.159  Sum_probs=113.1

Q ss_pred             EEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       143 ~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +++|.+++|||+|+-++....+..-.-...+..+.....+..+  ...+++|||.|++.+..            -+..++
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrs------------vt~ayy   68 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS------------VTHAYY   68 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhh------------hhHhhh
Confidence            4689999999999877654433211111111111111222233  45689999999986533            122457


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      +.+|.+++++|+.+..+..+.  ..|+.++.......+.+.+++||||+.+.+.+..+..+.+++.++. |+.++||++|
T Consensus        69 rda~allllydiankasfdn~--~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i-pfmetsaktg  145 (192)
T KOG0083|consen   69 RDADALLLLYDIANKASFDNC--QAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI-PFMETSAKTG  145 (192)
T ss_pred             cccceeeeeeecccchhHHHH--HHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCC-Cceecccccc
Confidence            899999999999887777654  4555555444333456899999999988766666777888888888 5999999999


Q ss_pred             CCHHHHHHHHHHHhhhcC
Q 020714          301 AGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       301 ~gi~el~~~i~~~l~~~~  318 (322)
                      -|++-.|-.|.+.+.+.+
T Consensus       146 ~nvd~af~~ia~~l~k~~  163 (192)
T KOG0083|consen  146 FNVDLAFLAIAEELKKLK  163 (192)
T ss_pred             ccHhHHHHHHHHHHHHhc
Confidence            999999999999988654

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.72  E-value=1.3e-16  Score=137.83  Aligned_cols=163  Identities=13%  Similarity=0.118  Sum_probs=104.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeee-eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ...++|+++|++|||||||++++..+.+. ...+..+............+...+.+|||+|...+..          +. 
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~----------~~-   75 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGG----------LR-   75 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhh----------hh-
Confidence            34689999999999999999876654432 2223333322222211223346788999999764321          11 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                       ...+..++++++|+|+++..+.  ..+..|+..+... ..+.|+++|+||+|+....... ... .+....+. .++++
T Consensus        76 -~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~~~~~-~~~-~~~~~~~~-~~~e~  148 (215)
T PTZ00132         76 -DGYYIKGQCAIIMFDVTSRITY--KNVPNWHRDIVRV-CENIPIVLVGNKVDVKDRQVKA-RQI-TFHRKKNL-QYYDI  148 (215)
T ss_pred             -HHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHh-CCCCCEEEEEECccCccccCCH-HHH-HHHHHcCC-EEEEE
Confidence             1234577999999999765433  2344555554422 2357899999999986532211 112 23333444 58999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||++|.|+++.+.+|.+.+..+
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTND  170 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhc
Confidence            9999999999999999988653

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.72  E-value=1.3e-16  Score=157.95  Aligned_cols=160  Identities=14%  Similarity=0.221  Sum_probs=102.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEE--EEee--CCccEEEEeCCCcccCCCCCChhhHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG--VMTK--ADTQICIFDTPGLMLNKSGYSHKDVKV  211 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~  211 (322)
                      ..++.+|+++|.+|+|||||+++|.+..+.. ....|.|.+....  .+..  .+..+.||||||+..|.          
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~----------  309 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS----------  309 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH----------
Confidence            4577899999999999999999998765542 2223333321111  1222  35789999999975321          


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHHHHHH---hc-C
Q 020714          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQF---KH-L  286 (322)
Q Consensus       212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~~---~~-~  286 (322)
                        ......+..+|++++|+|+.++...+....   +..+..   .+.|+|+|+||+|+..... ...+.....   .. .
T Consensus       310 --~mr~rg~~~aDiaILVVDA~dGv~~QT~E~---I~~~k~---~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~  381 (742)
T CHL00189        310 --SMRSRGANVTDIAILIIAADDGVKPQTIEA---INYIQA---ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKW  381 (742)
T ss_pred             --HHHHHHHHHCCEEEEEEECcCCCChhhHHH---HHHHHh---cCceEEEEEECCCccccCHHHHHHHHHHhccchHhh
Confidence              111134577899999999977644333222   222222   2578999999999975421 111111111   11 1


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      .+..+++++||++|.|+++|+++|....
T Consensus       382 g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        382 GGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            2334799999999999999999998764

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.72  E-value=1.1e-16  Score=127.08  Aligned_cols=140  Identities=18%  Similarity=0.299  Sum_probs=94.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|++|+|||||+++|.+....     ...|   +.  +...+   .++||||--...        ...+.......
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~-----~~KT---q~--i~~~~---~~IDTPGEyiE~--------~~~y~aLi~ta   61 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR-----YKKT---QA--IEYYD---NTIDTPGEYIEN--------PRFYHALIVTA   61 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC-----cCcc---ce--eEecc---cEEECChhheeC--------HHHHHHHHHHH
Confidence            6999999999999999999886532     1111   11  11223   459999964221        22344444556


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      ..||+++++.|++.+.+..-..+.   ..      -++|+|-|+||+|+.....+.+... .+...-|..++|++|+.+|
T Consensus        62 ~dad~V~ll~dat~~~~~~pP~fa---~~------f~~pvIGVITK~Dl~~~~~~i~~a~-~~L~~aG~~~if~vS~~~~  131 (143)
T PF10662_consen   62 QDADVVLLLQDATEPRSVFPPGFA---SM------FNKPVIGVITKIDLPSDDANIERAK-KWLKNAGVKEIFEVSAVTG  131 (143)
T ss_pred             hhCCEEEEEecCCCCCccCCchhh---cc------cCCCEEEEEECccCccchhhHHHHH-HHHHHcCCCCeEEEECCCC
Confidence            789999999999765433222221   11      1467999999999985445554433 3444457778999999999


Q ss_pred             CCHHHHHHHHH
Q 020714          301 AGLKALTQYLM  311 (322)
Q Consensus       301 ~gi~el~~~i~  311 (322)
                      +||++|.++|.
T Consensus       132 eGi~eL~~~L~  142 (143)
T PF10662_consen  132 EGIEELKDYLE  142 (143)
T ss_pred             cCHHHHHHHHh
Confidence            99999999885

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK09866 hypothetical protein; Provisional

Probab=99.71  E-value=2e-15  Score=144.43  Aligned_cols=116  Identities=17%  Similarity=0.184  Sum_probs=77.9

Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK  266 (322)
                      ..+.|+||||+.....    ........   ..+..+|+|++|+|+....+..+..+...+...+.    ..|+++|+||
T Consensus       230 ~QIIFVDTPGIhk~~~----~~L~k~M~---eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K----~~PVILVVNK  298 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQ----PHLQKMLN---QQLARASAVLAVLDYTQLKSISDEEVREAILAVGQ----SVPLYVLVNK  298 (741)
T ss_pred             CCEEEEECCCCCCccc----hHHHHHHH---HHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCC----CCCEEEEEEc
Confidence            5688999999985432    11111122   25788899999999977666666666666655332    2479999999


Q ss_pred             CCCCCChh----HHHHHHHHH--hcCCCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714          267 VDLVTKKK----DLLKVAEQF--KHLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       267 ~Dl~~~~~----~~~~~~~~~--~~~~~~~~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      +|+.+...    .........  .....+..+|++||+.|.|+++|++.|...
T Consensus       299 IDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        299 FDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             ccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            99964222    222222212  122335579999999999999999999873

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.70  E-value=4.4e-16  Score=153.06  Aligned_cols=159  Identities=14%  Similarity=0.266  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeee--ecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~--~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .|+++|.+++|||||+++|++.....  .....|.|.+.....+. ..+..+.||||||+..+            ...++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f------------i~~m~   69 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF------------LSNML   69 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH------------HHHHH
Confidence            58999999999999999999754221  22334666554433332 24567899999998532            34455


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--H-HHHHHHHHhcCC-CCCcEE
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--D-LLKVAEQFKHLP-GYERIF  293 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~-~~~~~~~~~~~~-~~~~~~  293 (322)
                      ..+..+|++++|+|+..+...+......++..++.     .++++|+||+|+.+...  . ..+....+.... ...+++
T Consensus        70 ~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi-----~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii  144 (614)
T PRK10512         70 AGVGGIDHALLVVACDDGVMAQTREHLAILQLTGN-----PMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLF  144 (614)
T ss_pred             HHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCC-----CeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence            66788999999999987665555445455544331     13689999999975321  1 122222222221 124799


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhh
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++||++|+|+++|+++|.+....
T Consensus       145 ~VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        145 VTAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             EEeCCCCCCCHHHHHHHHHhhcc
Confidence            99999999999999999876544

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.70  E-value=2.2e-16  Score=154.80  Aligned_cols=158  Identities=15%  Similarity=0.218  Sum_probs=101.6

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeee--------eec------CCCCceeeeEEEEEee---C--CccEEEEeCCCccc
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVA--------AVS------RKTNTTTHEVLGVMTK---A--DTQICIFDTPGLML  199 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~--------~~~------~~~~~t~~~~~~~~~~---~--~~~~~l~DtpG~~~  199 (322)
                      .-+++++|.+++|||||+++|+...-.        ...      ...|.|.......+..   +  ...+.||||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            347999999999999999999753210        111      1225555443332222   2  25789999999975


Q ss_pred             CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHH
Q 020714          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV  279 (322)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~  279 (322)
                      +..            .....+..||++++|+|++++...+....  +.....    .+.|+++|+||+|+....  ....
T Consensus        83 F~~------------~v~~~l~~aD~aILVvDat~g~~~qt~~~--~~~~~~----~~ipiIiViNKiDl~~~~--~~~~  142 (595)
T TIGR01393        83 FSY------------EVSRSLAACEGALLLVDAAQGIEAQTLAN--VYLALE----NDLEIIPVINKIDLPSAD--PERV  142 (595)
T ss_pred             HHH------------HHHHHHHhCCEEEEEecCCCCCCHhHHHH--HHHHHH----cCCCEEEEEECcCCCccC--HHHH
Confidence            421            12234677899999999987654443322  221111    146799999999996532  1222


Q ss_pred             HHHHhcCCCCC--cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          280 AEQFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       280 ~~~~~~~~~~~--~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ...+.+..+..  +++++||++|.|+++++++|.+.+..
T Consensus       143 ~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       143 KKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             HHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence            23333333332  48999999999999999999988764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01858 NGP_1 NGP-1

Probab=99.70  E-value=1.9e-16  Score=130.12  Aligned_cols=128  Identities=25%  Similarity=0.282  Sum_probs=93.2

Q ss_pred             CCCceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhhCCeE-EEeec-cccchhhh
Q 020714           44 NDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRI-VFGEE-AQKGKLRI  100 (322)
Q Consensus        44 ~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~~~~i-~f~~~-~~~~~~~~  100 (322)
                      +.+|+++.+.|++.|... +                    ||+|+.+++....|..+|.+..... +..++ .+.+...+
T Consensus         7 ~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L   86 (157)
T cd01858           7 DSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSL   86 (157)
T ss_pred             hhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHH
Confidence            369999999999998654 2                    7999988877788999998765443 44555 56666555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEE
Q 020714          101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG  180 (322)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~  180 (322)
                      .+..          ...+..             .......+|+++|.||||||||+|+|.+.....++..+|+|+.....
T Consensus        87 ~~~l----------~~~~~~-------------~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~  143 (157)
T cd01858          87 IQLL----------RQFSKL-------------HSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYI  143 (157)
T ss_pred             HHHH----------HHHHhh-------------hccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEE
Confidence            2111          111110             00124578999999999999999999999888999999999876543


Q ss_pred             EEeeCCccEEEEeCCCc
Q 020714          181 VMTKADTQICIFDTPGL  197 (322)
Q Consensus       181 ~~~~~~~~~~l~DtpG~  197 (322)
                      .   .+..+.++||||+
T Consensus       144 ~---~~~~~~liDtPGi  157 (157)
T cd01858         144 T---LMKRIYLIDCPGV  157 (157)
T ss_pred             E---cCCCEEEEECcCC
Confidence            2   2346899999996

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.70  E-value=3.8e-16  Score=152.23  Aligned_cols=157  Identities=18%  Similarity=0.301  Sum_probs=97.1

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCC-ceeeeEEEEEee------------------CCccEEEEeCCCcc
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMTK------------------ADTQICIFDTPGLM  198 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~-~t~~~~~~~~~~------------------~~~~~~l~DtpG~~  198 (322)
                      +++.|+++|.+|+|||||+|+|.+..+..  ..+| +|.+.-...+..                  ....+.||||||+.
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~--~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e   80 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK--REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE   80 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccccc--ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence            45679999999999999999999875532  2222 222100000000                  01248999999986


Q ss_pred             cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh----
Q 020714          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK----  274 (322)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~----  274 (322)
                      .+..      +      ....+..+|++++|+|++++...+......++..   .   +.|+++|+||+|+.....    
T Consensus        81 ~f~~------l------~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~---~---~vpiIVv~NK~Dl~~~~~~~~~  142 (590)
T TIGR00491        81 AFTN------L------RKRGGALADLAILIVDINEGFKPQTQEALNILRM---Y---KTPFVVAANKIDRIPGWRSHEG  142 (590)
T ss_pred             hHHH------H------HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH---c---CCCEEEEEECCCccchhhhccC
Confidence            4321      1      1124578899999999987654443333333322   2   467999999999974210    


Q ss_pred             ----------------HH----HHHHHHHh-------------cCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          275 ----------------DL----LKVAEQFK-------------HLPGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       275 ----------------~~----~~~~~~~~-------------~~~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                                      ..    ......+.             +..+..+++++||++|+|+++|+++|....
T Consensus       143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                            00    00001111             223445899999999999999999987544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.70  E-value=4.3e-16  Score=134.34  Aligned_cols=172  Identities=19%  Similarity=0.250  Sum_probs=117.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ...++++.++|.+|+|||||||+|+......+...+.++...+......++..+.||||||+.+...     ...+.-..
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~-----~D~~~r~~  110 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKD-----KDAEHRQL  110 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchh-----hhHHHHHH
Confidence            4568899999999999999999999776665555444444444434446678899999999986432     11222334


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-----------hH----HH---
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-----------KD----LL---  277 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-----------~~----~~---  277 (322)
                      ..+.+...|++++++++.++.-.-+..+..-+.....    +.++++++|.+|...+.           ..    .+   
T Consensus       111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~  186 (296)
T COG3596         111 YRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGL----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA  186 (296)
T ss_pred             HHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhcc----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence            4455677799999999987765555433333322221    36799999999987541           01    11   


Q ss_pred             -HHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          278 -KVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       278 -~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                       ...+.+.   ...|++..|++.++|++++...+++++..+..
T Consensus       187 ~~~~~~~q---~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r  226 (296)
T COG3596         187 EALGRLFQ---EVKPVVAVSGRLPWGLKELVRALITALPVEAR  226 (296)
T ss_pred             HHHHHHHh---hcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence             1122222   24578999999999999999999999986543

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=1.3e-17  Score=131.21  Aligned_cols=162  Identities=17%  Similarity=0.188  Sum_probs=110.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeee-----eecCCCCceeeeEEEEEe-----eCCccEEEEeCCCcccCCCCCChhhH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKTNTTTHEVLGVMT-----KADTQICIFDTPGLMLNKSGYSHKDV  209 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~-----~~~~~~~~t~~~~~~~~~-----~~~~~~~l~DtpG~~~~~~~~~~~~~  209 (322)
                      ++...+|.+||||||++-+.+..++.     .++...-..+-.......     .....+++|||+|++.|..      .
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS------L   83 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS------L   83 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH------H
Confidence            45677899999999999887765432     222211111110000000     0013578999999986532      1


Q ss_pred             HHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCC
Q 020714          210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG  288 (322)
Q Consensus       210 ~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~  288 (322)
                      ..      ..++.|=+++++||.++..+.  ..+..|+..+... ...+.-+++++||+|+.+.+.+.+.....+++.++
T Consensus        84 TT------AFfRDAMGFlLiFDlT~eqSF--LnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg  155 (219)
T KOG0081|consen   84 TT------AFFRDAMGFLLIFDLTSEQSF--LNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYG  155 (219)
T ss_pred             HH------HHHHhhccceEEEeccchHHH--HHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC
Confidence            11      235666789999999764333  3577888877643 23344589999999999988888888899999999


Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          289 YERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       289 ~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      . |+|++||-+|.|+++..+.+...+.+
T Consensus       156 l-PYfETSA~tg~Nv~kave~LldlvM~  182 (219)
T KOG0081|consen  156 L-PYFETSACTGTNVEKAVELLLDLVMK  182 (219)
T ss_pred             C-CeeeeccccCcCHHHHHHHHHHHHHH
Confidence            8 59999999999999988887776544

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.69  E-value=7.3e-16  Score=133.73  Aligned_cols=153  Identities=17%  Similarity=0.253  Sum_probs=97.2

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeee------e--c-----CCCCcee------------------------eeEEEEEe
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAA------V--S-----RKTNTTT------------------------HEVLGVMT  183 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~------~--~-----~~~~~t~------------------------~~~~~~~~  183 (322)
                      +|+++|..++|||||++++....+..      .  .     ...|.|.                        ......+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            47899999999999999998532211      0  0     0001111                        00012233


Q ss_pred             eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc--ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE
Q 020714          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV  261 (322)
Q Consensus       184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i  261 (322)
                      ..+..+.++||||...+            ...++..+  ..+|++++|+|+..+....+.....++...+      .|++
T Consensus        81 ~~~~~i~liDtpG~~~~------------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~------ip~i  142 (224)
T cd04165          81 KSSKLVTFIDLAGHERY------------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALN------IPVF  142 (224)
T ss_pred             eCCcEEEEEECCCcHHH------------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCEE
Confidence            45678899999997633            12222333  3689999999998776666556666665544      5699


Q ss_pred             EEEeCCCCCCChhHHHHHH----HHHh------------------------cCCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714          262 LCMNKVDLVTKKKDLLKVA----EQFK------------------------HLPGYERIFMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       262 vV~NK~Dl~~~~~~~~~~~----~~~~------------------------~~~~~~~~~~iSa~~g~gi~el~~~i~~  312 (322)
                      +|+||+|+.... ......    ..+.                        ......|+|.+||.+|+|+++|++.|..
T Consensus       143 vvvNK~D~~~~~-~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         143 VVVTKIDLAPAN-ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             EEEECccccCHH-HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            999999987542 222222    2222                        1223448999999999999999988754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.69  E-value=2.9e-16  Score=136.14  Aligned_cols=147  Identities=22%  Similarity=0.280  Sum_probs=93.5

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCe------------------------------eeeecCCCCceeeeEEEEEeeCCccEE
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTK------------------------------VAAVSRKTNTTTHEVLGVMTKADTQIC  190 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~------------------------------~~~~~~~~~~t~~~~~~~~~~~~~~~~  190 (322)
                      +|+++|.+++|||||+.+|+...                              ........|+|++.....+...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            48999999999999999986310                              001112346777777766777888999


Q ss_pred             EEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-------CCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-------~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ++||||+..+            ....+..+..+|++++|+|++.+.       ..+..........++     ..|+++|
T Consensus        81 liDtpG~~~~------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~iiiv  143 (219)
T cd01883          81 ILDAPGHRDF------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLG-----VKQLIVA  143 (219)
T ss_pred             EEECCChHHH------------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcC-----CCeEEEE
Confidence            9999997532            223344567789999999997642       111112222222222     2469999


Q ss_pred             EeCCCCCCC---hhHHHHHHHH---HhcCCCC----CcEEEeecCCCCCHH
Q 020714          264 MNKVDLVTK---KKDLLKVAEQ---FKHLPGY----ERIFMTSGLKGAGLK  304 (322)
Q Consensus       264 ~NK~Dl~~~---~~~~~~~~~~---~~~~~~~----~~~~~iSa~~g~gi~  304 (322)
                      +||+|+...   ..........   +....+.    .+++++||++|.||+
T Consensus       144 vNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         144 VNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             EEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            999999742   2222222222   1222222    469999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.68  E-value=1.1e-15  Score=138.84  Aligned_cols=165  Identities=19%  Similarity=0.208  Sum_probs=107.5

Q ss_pred             EEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee------------------------CCccEEEEeCCCc
Q 020714          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------------ADTQICIFDTPGL  197 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~l~DtpG~  197 (322)
                      |+++|.||||||||+|+|++... .+++.|++|..+..+....                        ....+.+|||||+
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl   79 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL   79 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence            57999999999999999998764 5677788887766654321                        2246899999999


Q ss_pred             ccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCC-----------CcHH-------HHHH--------------
Q 020714          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-----------SPDS-------RVIR--------------  245 (322)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~-----------~~~~-------~~~~--------------  245 (322)
                      .....     .....-...+..++.||++++|+|++....           .+..       ++..              
T Consensus        80 v~ga~-----~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~  154 (318)
T cd01899          80 VPGAH-----EGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIV  154 (318)
T ss_pred             CCCcc-----chhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            74321     111223456677899999999999963110           0000       0000              


Q ss_pred             ------------------------------HHHHhccc------------------CCCCCcEEEEEeCCCCCCChhHHH
Q 020714          246 ------------------------------LIERMGKQ------------------APPKQKRVLCMNKVDLVTKKKDLL  277 (322)
Q Consensus       246 ------------------------------~l~~~~~~------------------~~~~~p~ivV~NK~Dl~~~~~~~~  277 (322)
                                                    .++.-...                  -...+|+|+|+||+|+........
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~  234 (318)
T cd01899         155 RKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNIS  234 (318)
T ss_pred             HHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHH
Confidence                                          00000000                  022479999999999864332222


Q ss_pred             HHHHHHhcCCCCCcEEEeecCCCCCHHHHHH-HHHHHhhh
Q 020714          278 KVAEQFKHLPGYERIFMTSGLKGAGLKALTQ-YLMEQFKD  316 (322)
Q Consensus       278 ~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~-~i~~~l~~  316 (322)
                          .+.......+++++||+.+.|+++|.+ .+.+.+.+
T Consensus       235 ----~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe  270 (318)
T cd01899         235 ----KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG  270 (318)
T ss_pred             ----HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence                222223345799999999999999998 69988865

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.68  E-value=8.9e-16  Score=145.92  Aligned_cols=152  Identities=16%  Similarity=0.235  Sum_probs=99.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC--eee----------------------------eecCCCCceeeeEEEEEeeCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT--KVA----------------------------AVSRKTNTTTHEVLGVMTKAD  186 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~--~~~----------------------------~~~~~~~~t~~~~~~~~~~~~  186 (322)
                      ...++|+++|..++|||||+++|+..  .+.                            ......|.|.+.....+...+
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            45789999999999999999999741  110                            011234677776666666778


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHH---HHHHHHhcccCCCCCcEEEE
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRV---IRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~---~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ..+.||||||+..+            ...++..+..+|++++|+|++++..+.....   ..+...++     ..++++|
T Consensus        85 ~~i~iiDtpGh~~f------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVv  147 (426)
T TIGR00483        85 YEVTIVDCPGHRDF------------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVA  147 (426)
T ss_pred             eEEEEEECCCHHHH------------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEE
Confidence            88999999997532            2334445678999999999987633221111   12222222     2469999


Q ss_pred             EeCCCCCCCh-hHH---HHHHHHHhcCCCC----CcEEEeecCCCCCHHH
Q 020714          264 MNKVDLVTKK-KDL---LKVAEQFKHLPGY----ERIFMTSGLKGAGLKA  305 (322)
Q Consensus       264 ~NK~Dl~~~~-~~~---~~~~~~~~~~~~~----~~~~~iSa~~g~gi~e  305 (322)
                      +||+|+.... ...   ......+....++    .+++++||++|.|+++
T Consensus       148 iNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       148 INKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             EEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            9999997522 211   2223333333332    4699999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.68  E-value=3.1e-16  Score=126.48  Aligned_cols=109  Identities=28%  Similarity=0.451  Sum_probs=83.0

Q ss_pred             CCCceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhh
Q 020714           44 NDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIF  101 (322)
Q Consensus        44 ~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~  101 (322)
                      +.+|+++.+.|++.|... +                    ||+|+.+++....|..++...+..+++.++ ++.+     
T Consensus        10 ~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~-----   84 (141)
T cd01857          10 ERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA-----   84 (141)
T ss_pred             hhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc-----
Confidence            468999999999988765 2                    567776666556677777666666666655 2211     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEE
Q 020714          102 QEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV  181 (322)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~  181 (322)
                                                             +++++|.||||||||+|+|.+.....++..+|+|++.....
T Consensus        85 ---------------------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~  125 (141)
T cd01857          85 ---------------------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIF  125 (141)
T ss_pred             ---------------------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEE
Confidence                                                   58999999999999999999998888888899888866533


Q ss_pred             EeeCCccEEEEeCCCccc
Q 020714          182 MTKADTQICIFDTPGLML  199 (322)
Q Consensus       182 ~~~~~~~~~l~DtpG~~~  199 (322)
                      +   +..+.++||||+..
T Consensus       126 ~---~~~~~i~DtpG~~~  140 (141)
T cd01857         126 L---TPTITLCDCPGLVF  140 (141)
T ss_pred             e---CCCEEEEECCCcCC
Confidence            3   23689999999974

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>CHL00071 tufA elongation factor Tu

Probab=99.67  E-value=6.1e-16  Score=146.06  Aligned_cols=161  Identities=17%  Similarity=0.150  Sum_probs=106.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCee---------------eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV---------------AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      ....++|+++|.+++|||||+|+|++...               .......|.|.+.....+...+..+.|+||||+.. 
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~-   87 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-   87 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH-
Confidence            45678999999999999999999986311               11122356776665555555677899999999642 


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHH--
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLL--  277 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~--  277 (322)
                                 .+..++..+..+|++++|+|+..+...+......++..++      .| +|+++||+|+.......+  
T Consensus        88 -----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g------~~~iIvvvNK~D~~~~~~~~~~~  150 (409)
T CHL00071         88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVG------VPNIVVFLNKEDQVDDEELLELV  150 (409)
T ss_pred             -----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCEEEEEEEccCCCCHHHHHHHH
Confidence                       2444455677889999999998766555545555444433      45 778999999986433221  


Q ss_pred             -HHHHHHhcCCC----CCcEEEeecCCCCC------------------HHHHHHHHHHHh
Q 020714          278 -KVAEQFKHLPG----YERIFMTSGLKGAG------------------LKALTQYLMEQF  314 (322)
Q Consensus       278 -~~~~~~~~~~~----~~~~~~iSa~~g~g------------------i~el~~~i~~~l  314 (322)
                       .....+....+    ..+++++||.+|.+                  +..|++.|...+
T Consensus       151 ~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~  210 (409)
T CHL00071        151 ELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI  210 (409)
T ss_pred             HHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence             12222222222    24799999999973                  466777766654

>PRK12736 elongation factor Tu; Reviewed

Probab=99.67  E-value=1.7e-15  Score=142.34  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=108.4

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCee----------e-----eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV----------A-----AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~----------~-----~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      .+..++|+++|.+++|||||+++|++...          .     ......|.|.+.....+...+..+.|+||||+..+
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            45678999999999999999999986210          0     11124567776655445455678899999997532


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHH--
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLL--  277 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~--  277 (322)
                                  +..++..+..+|++++|+|+..+...+......++...      ++| +|+|+||+|+....+..+  
T Consensus        89 ------------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~------g~~~~IvviNK~D~~~~~~~~~~i  150 (394)
T PRK12736         89 ------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV------GVPYLVVFLNKVDLVDDEELLELV  150 (394)
T ss_pred             ------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc------CCCEEEEEEEecCCcchHHHHHHH
Confidence                        34445556788999999999776555444444544443      345 678999999975432221  


Q ss_pred             -HHHHHHhcCCC----CCcEEEeecCCCC--------CHHHHHHHHHHHhh
Q 020714          278 -KVAEQFKHLPG----YERIFMTSGLKGA--------GLKALTQYLMEQFK  315 (322)
Q Consensus       278 -~~~~~~~~~~~----~~~~~~iSa~~g~--------gi~el~~~i~~~l~  315 (322)
                       .....+....+    ..+++++||++|.        ++.+|++.|.+.+.
T Consensus       151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        151 EMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence             12222222222    2479999999983        68899999888765

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.67  E-value=1.5e-15  Score=143.17  Aligned_cols=161  Identities=19%  Similarity=0.265  Sum_probs=98.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeee--ecCCCCceeeeE--------------------EEEEee------CCccE
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEV--------------------LGVMTK------ADTQI  189 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~--~~~~~~~t~~~~--------------------~~~~~~------~~~~~  189 (322)
                      ..++|+++|.+++|||||+++|.+.....  .....|.|....                    ...+..      .+..+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            46789999999999999999997642211  000112221111                    000000      13578


Q ss_pred             EEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q 020714          190 CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD  268 (322)
Q Consensus       190 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~D  268 (322)
                      .++||||+..+            ...++..+..+|++++|+|++.+. ..+.......+..++     ..|+++|+||+|
T Consensus        83 ~liDtPGh~~f------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g-----i~~iIVvvNK~D  145 (406)
T TIGR03680        83 SFVDAPGHETL------------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG-----IKNIVIVQNKID  145 (406)
T ss_pred             EEEECCCHHHH------------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC-----CCeEEEEEEccc
Confidence            99999997532            233445566789999999998754 333333333333332     235899999999


Q ss_pred             CCCChhH--HHHHHHHHhcCC--CCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          269 LVTKKKD--LLKVAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       269 l~~~~~~--~~~~~~~~~~~~--~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +......  .......+....  ...+++++||++|+|+++|+++|...+.
T Consensus       146 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       146 LVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             cCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            9764321  111122222111  1236999999999999999999998754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.66  E-value=2.3e-15  Score=141.53  Aligned_cols=163  Identities=15%  Similarity=0.160  Sum_probs=107.1

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCC-------eee--------eecCCCCceeeeEEEEEeeCCccEEEEeCCCccc
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGT-------KVA--------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML  199 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~-------~~~--------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~  199 (322)
                      ..+..++|+++|.+++|||||+++|++.       ...        ......|.|.+.....+...+..+.|+||||+..
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            3456789999999999999999999852       110        1112346666655544545667899999999752


Q ss_pred             CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE-EEEeCCCCCCChhH---
Q 020714          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LCMNKVDLVTKKKD---  275 (322)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i-vV~NK~Dl~~~~~~---  275 (322)
                                  .+..+...+..+|++++|+|+..+...+.......+...      ++|.+ +|+||+|+......   
T Consensus        88 ------------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~------gi~~iivvvNK~Dl~~~~~~~~~  149 (396)
T PRK12735         88 ------------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLEL  149 (396)
T ss_pred             ------------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEEEecCCcchHHHHHH
Confidence                        234555667788999999999776544433333333332      34554 68999999753221   


Q ss_pred             HHHHHHHHhcCCC----CCcEEEeecCCCC----------CHHHHHHHHHHHhh
Q 020714          276 LLKVAEQFKHLPG----YERIFMTSGLKGA----------GLKALTQYLMEQFK  315 (322)
Q Consensus       276 ~~~~~~~~~~~~~----~~~~~~iSa~~g~----------gi~el~~~i~~~l~  315 (322)
                      .......+....+    ..+++++||++|.          |+.+|++.|...+.
T Consensus       150 ~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            1212223332222    2468999999994          78899999988653

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.66  E-value=2e-15  Score=148.19  Aligned_cols=158  Identities=16%  Similarity=0.244  Sum_probs=100.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCe--ee------ee------cCCCCceeeeEEEEEee-----CCccEEEEeCCCccc
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTK--VA------AV------SRKTNTTTHEVLGVMTK-----ADTQICIFDTPGLML  199 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~--~~------~~------~~~~~~t~~~~~~~~~~-----~~~~~~l~DtpG~~~  199 (322)
                      .-+++++|..++|||||+++|+...  +.      ..      ....|.|.......+.+     .+..+.||||||+..
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            4579999999999999999997521  10      00      11224444332222222     245789999999975


Q ss_pred             CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHH
Q 020714          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV  279 (322)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~  279 (322)
                      +..            .....+..+|++++|+|++.+...+......+...      .+.|+++|+||+|+.....  ...
T Consensus        87 F~~------------~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~a~~--~~v  146 (600)
T PRK05433         87 FSY------------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPAADP--ERV  146 (600)
T ss_pred             HHH------------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCcccH--HHH
Confidence            421            12234567899999999987654433222222211      1467999999999865321  222


Q ss_pred             HHHHhcCCCCC--cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          280 AEQFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       280 ~~~~~~~~~~~--~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ...+.+..+..  .++++||++|.|+++++++|.+.+..
T Consensus       147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            22333323332  48999999999999999999988764

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.66  E-value=1.8e-15  Score=124.04  Aligned_cols=124  Identities=24%  Similarity=0.244  Sum_probs=84.8

Q ss_pred             CCCCCC-CCCCCCCCCCChhhHHHHHHhh-CCeEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 020714           56 RIPTID-DPQNNNAAKKQEPTWDEKYRER-TDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEV  132 (322)
Q Consensus        56 ~~p~~~-~~k~dl~~~~~~~~w~~~~~~~-~~~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  132 (322)
                      ..|.+. -||+|+++++....|..++... +..+++.++ ++.+...+.+...          .......+    .. ..
T Consensus        29 ~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~----------~~~~~~~~----~~-~~   93 (155)
T cd01849          29 GKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFT----------KQTNSNLK----SY-AK   93 (155)
T ss_pred             CCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHH----------HHhHHHHH----HH-Hh
Confidence            344444 5899998887777898777654 455788888 7777776632211          11100010    00 01


Q ss_pred             hhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCc
Q 020714          133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL  197 (322)
Q Consensus       133 ~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~  197 (322)
                      ........+++++|.||||||||+|+|.+.....++..+++|+.......   +..+.++||||+
T Consensus        94 ~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~  155 (155)
T cd01849          94 DGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI  155 (155)
T ss_pred             ccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence            11234578899999999999999999999887778888999988776433   357899999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.65  E-value=3.3e-15  Score=130.80  Aligned_cols=113  Identities=19%  Similarity=0.330  Sum_probs=75.1

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCee-----eeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKV-----AAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG  203 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~-----~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~  203 (322)
                      +|+++|.+|+|||||+++|+...-     ..+.            ...+.|.......+...+..+.+|||||+..+.  
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~--   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI--   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence            489999999999999999975311     1011            112333333444455678899999999997541  


Q ss_pred             CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (322)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~  271 (322)
                                ..+...+..+|++++|+|+..+...+...+...+..   .   +.|+++++||+|+..
T Consensus        79 ----------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~---~---~~P~iivvNK~D~~~  130 (237)
T cd04168          79 ----------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK---L---NIPTIIFVNKIDRAG  130 (237)
T ss_pred             ----------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH---c---CCCEEEEEECccccC
Confidence                      123345677799999999987654433334443333   2   467999999999975

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.65  E-value=7.3e-15  Score=127.10  Aligned_cols=164  Identities=16%  Similarity=0.218  Sum_probs=107.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .++|+++|++|||||||++++.+..+.................... ....+.+|||+|+..+             +..+
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~-------------~~~~   71 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY-------------RSLR   71 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH-------------HHHH
Confidence            3899999999999999999999887664443222222222222211 1456899999998743             2222


Q ss_pred             -hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHH------------HHHHh
Q 020714          218 -SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV------------AEQFK  284 (322)
Q Consensus       218 -~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~------------~~~~~  284 (322)
                       ..+..++++++++|...... .......|...+........|+++|+||+|+..........            .....
T Consensus        72 ~~y~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (219)
T COG1100          72 PEYYRGANGILIVYDSTLRES-SDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKA  150 (219)
T ss_pred             HHHhcCCCEEEEEEecccchh-hhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHH
Confidence             34588999999999975322 22334456656555443468899999999998764321111            11111


Q ss_pred             --cCCCCCcEEEeecC--CCCCHHHHHHHHHHHhhh
Q 020714          285 --HLPGYERIFMTSGL--KGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       285 --~~~~~~~~~~iSa~--~g~gi~el~~~i~~~l~~  316 (322)
                        .......++++|++  ++.|+++++..+...+..
T Consensus       151 ~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~  186 (219)
T COG1100         151 VLPEVANPALLETSAKSLTGPNVNELFKELLRKLLE  186 (219)
T ss_pred             hhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence              11112238999999  999999999999988864

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.65  E-value=3.4e-15  Score=127.36  Aligned_cols=163  Identities=18%  Similarity=0.256  Sum_probs=101.0

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCC---ceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTN---TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~---~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      +++|+++|.+|||||||+|+|++......+. ..+   +|..... +.......+.+|||||+.....  .   ....++
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~l~l~DtpG~~~~~~--~---~~~~l~   74 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP-YPHPKFPNVTLWDLPGIGSTAF--P---PDDYLE   74 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee-eecCCCCCceEEeCCCCCcccC--C---HHHHHH
Confidence            3689999999999999999999854332111 111   2222111 1111235789999999875322  1   111122


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQ  282 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~  282 (322)
                      .  ..+..+|+++++.+.  +.+..+..+..++...      +.|+++|+||+|+.....            ...+....
T Consensus        75 ~--~~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~  144 (197)
T cd04104          75 E--MKFSEYDFFIIISST--RFSSNDVKLAKAIQCM------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN  144 (197)
T ss_pred             H--hCccCcCEEEEEeCC--CCCHHHHHHHHHHHHh------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHH
Confidence            1  235678998888543  4455555555555553      356999999999954211            12222222


Q ss_pred             HhcC-----CCCCcEEEeecC--CCCCHHHHHHHHHHHhhhc
Q 020714          283 FKHL-----PGYERIFMTSGL--KGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       283 ~~~~-----~~~~~~~~iSa~--~g~gi~el~~~i~~~l~~~  317 (322)
                      +...     ...+++|.+|+.  .+.|+..|.+.|...+.++
T Consensus       145 ~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         145 CLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence            2211     124579999999  6899999999999999875

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.65  E-value=1.2e-15  Score=134.18  Aligned_cols=165  Identities=19%  Similarity=0.185  Sum_probs=111.4

Q ss_pred             CCCCceEEEccccCCCCCC-C--------------------CCCCCCCCCCh-hhHHHHHHhhCCeEEEeec-cccchhh
Q 020714           43 ENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQE-PTWDEKYRERTDRIVFGEE-AQKGKLR   99 (322)
Q Consensus        43 ~~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~-~~w~~~~~~~~~~i~f~~~-~~~~~~~   99 (322)
                      ...+|.++.+.|++.|.++ +                    ||+||.+.... ..|..+|...+..+++.++ ++.+..+
T Consensus        34 ~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~e  113 (245)
T TIGR00157        34 VANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKE  113 (245)
T ss_pred             cccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHH
Confidence            3478888888888877743 2                    89999765443 4788999888888888998 7777766


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecC-------CCC
Q 020714          100 IFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTN  172 (322)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-------~~~  172 (322)
                      +++              .+.                   ...++++|+||||||||||+|.+.....++.       ..+
T Consensus       114 Lf~--------------~l~-------------------~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~h  160 (245)
T TIGR00157       114 LIE--------------ALQ-------------------NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKH  160 (245)
T ss_pred             HHh--------------hhc-------------------CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCC
Confidence            611              110                   1248899999999999999999865443332       234


Q ss_pred             ceeeeEEEEEeeCCccEEEEeCCCcccCCC-CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714          173 TTTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER  249 (322)
Q Consensus       173 ~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~  249 (322)
                      ||+......+ .+   ..++||||+..+.. ......+...|.........|.     |.-+.|..++.+.+.+.++.
T Consensus       161 TT~~~~l~~l-~~---~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~~~~C~-----f~~C~H~~ep~C~v~~a~~~  229 (245)
T TIGR00157       161 TTTHVELFHF-HG---GLIADTPGFNEFGLWHLEPEQLTQGFVEFRDYLGECK-----FRDCLHQSEPGCAVRQAVEQ  229 (245)
T ss_pred             cCCceEEEEc-CC---cEEEeCCCccccCCCCCCHHHHHHhCHHHHHHhCCCC-----CCCCccCCCCCChHHHHHHc
Confidence            6766665443 22   38999999987764 3333555555555444444443     44456778888887776653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.64  E-value=3.5e-15  Score=140.74  Aligned_cols=163  Identities=20%  Similarity=0.301  Sum_probs=100.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeee--eecCCCCceeeeEEEEEe-------------------e--C-----Ccc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVMT-------------------K--A-----DTQ  188 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~--~~~~~~~~t~~~~~~~~~-------------------~--~-----~~~  188 (322)
                      ...++|+++|..++|||||+.+|.+....  ......|.|.........                   .  +     ...
T Consensus         7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            45689999999999999999999763211  111112333322110000                   0  0     257


Q ss_pred             EEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714          189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKV  267 (322)
Q Consensus       189 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~  267 (322)
                      +.||||||...+            ...++.....+|++++|+|++.+. ..+......++...+     ..|+++|+||+
T Consensus        87 i~liDtPG~~~f------------~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~-----i~~iiVVlNK~  149 (411)
T PRK04000         87 VSFVDAPGHETL------------MATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG-----IKNIVIVQNKI  149 (411)
T ss_pred             EEEEECCCHHHH------------HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEEee
Confidence            899999997532            334455567789999999998654 233333333433322     23589999999


Q ss_pred             CCCCChhHH--HHHHHHHhcC--CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          268 DLVTKKKDL--LKVAEQFKHL--PGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       268 Dl~~~~~~~--~~~~~~~~~~--~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      |+.......  .+....+...  ....+++++||++|.|+++|+++|...+..
T Consensus       150 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        150 DLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             ccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            997643211  1222222221  112469999999999999999999987653

>PRK12289 GTPase RsgA; Reviewed

Probab=99.64  E-value=1.7e-15  Score=139.05  Aligned_cols=163  Identities=18%  Similarity=0.220  Sum_probs=105.0

Q ss_pred             CCCCceEEEccccCCCCCC---------------------CCCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhh
Q 020714           43 ENDCDSVFDSSYFRIPTID---------------------DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRI  100 (322)
Q Consensus        43 ~~~~d~v~~~~da~~p~~~---------------------~~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~  100 (322)
                      ...+|.++-+.|+.-|.+.                     -||+||++.+....|..+|...++.+++.++ ++.|...+
T Consensus        87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL  166 (352)
T PRK12289         87 VANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEAL  166 (352)
T ss_pred             hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHH
Confidence            3468877766666544322                     2899999877778999999888888999998 77887666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCC-------c
Q 020714          101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------T  173 (322)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~-------~  173 (322)
                      ++              .+.                   ...++|+|+||||||||||+|++.....++..++       |
T Consensus       167 ~~--------------~L~-------------------~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHT  213 (352)
T PRK12289        167 LE--------------QLR-------------------NKITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHT  213 (352)
T ss_pred             hh--------------hhc-------------------cceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCc
Confidence            11              110                   1137999999999999999999876666665555       6


Q ss_pred             eeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHH
Q 020714          174 TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI  244 (322)
Q Consensus       174 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~  244 (322)
                      |++.....+.. +  ..|+||||+..+......+.+...|........  ..-+-+-| +.|..++.+.+.
T Consensus       214 T~~~~l~~l~~-g--~~liDTPG~~~~~l~~~~~~l~~~F~e~~~~~~--~~~CrF~d-C~H~~EPgCaV~  278 (352)
T PRK12289        214 TRHVELFELPN-G--GLLADTPGFNQPDLDCSPRELAHYFPEARQRLA--QGNCQFND-CLHRDEPNCAVR  278 (352)
T ss_pred             CceeEEEECCC-C--cEEEeCCCccccccccCHHHHHhhHHHHHHhHh--hCceEccC-CccCCCCChhhh
Confidence            76665433322 2  389999999887653333444444443322210  01222334 455566666544

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.64  E-value=4.6e-15  Score=139.54  Aligned_cols=160  Identities=18%  Similarity=0.205  Sum_probs=101.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC------eee---------eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT------KVA---------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      .+..++|+++|..++|||||+++|++.      ...         ......|.|.+.....+...+..+.||||||+..+
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            456789999999999999999999742      100         11123567777655555455667999999998643


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHH--
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLL--  277 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~--  277 (322)
                                  ...++.....+|++++|+|+..+...+......++...+      .| +|+|+||+|+.......+  
T Consensus        89 ------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~g------i~~iIvvvNK~Dl~~~~~~~~~~  150 (394)
T TIGR00485        89 ------------VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVG------VPYIVVFLNKCDMVDDEELLELV  150 (394)
T ss_pred             ------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCEEEEEEEecccCCHHHHHHHH
Confidence                        233444557789999999997755444434444443332      34 457899999976433222  


Q ss_pred             -HHHHHHhcCCCC----CcEEEeecCCCC--------CHHHHHHHHHHH
Q 020714          278 -KVAEQFKHLPGY----ERIFMTSGLKGA--------GLKALTQYLMEQ  313 (322)
Q Consensus       278 -~~~~~~~~~~~~----~~~~~iSa~~g~--------gi~el~~~i~~~  313 (322)
                       .....+....+.    .+++++||++|.        ++.++++.|...
T Consensus       151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~  199 (394)
T TIGR00485       151 EMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY  199 (394)
T ss_pred             HHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence             223333333332    479999999885        345555555543

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.64  E-value=8.1e-15  Score=136.96  Aligned_cols=88  Identities=22%  Similarity=0.306  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee------------------------CCccEEEEeCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------------ADTQICIFDTP  195 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~l~Dtp  195 (322)
                      ++|+++|.||||||||+|+|++... .++..+++|.....+....                        ....+.++|||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a   80 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA   80 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence            5799999999999999999998865 4567788887777654321                        12457899999


Q ss_pred             CcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCC
Q 020714          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (322)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s  233 (322)
                      |+.....     .....-.+.+..++.||++++|+|+.
T Consensus        81 Gl~~ga~-----~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         81 GLVPGAH-----EGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             CcCCCcc-----chhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            9975321     11122345667789999999999996

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.63  E-value=9.2e-16  Score=127.77  Aligned_cols=163  Identities=13%  Similarity=0.134  Sum_probs=114.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-CC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-AD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ..+++.+||..++|||+|+-.+..+.++.... |.+. +........ ++  ..+.+|||.|++++....+         
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yv-PTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRp---------   71 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYV-PTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRP---------   71 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCccccc-CeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccc---------
Confidence            35789999999999999998887665443221 1111 111111222 23  4568999999997754222         


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQ  282 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~  282 (322)
                         -.+..+|+++++|++.++.+..+ ....|+-++.... ++.|+|+|++|.||.....            +..+....
T Consensus        72 ---lsY~~tdvfl~cfsv~~p~S~~n-v~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~  146 (198)
T KOG0393|consen   72 ---LSYPQTDVFLLCFSVVSPESFEN-VKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLE  146 (198)
T ss_pred             ---cCCCCCCEEEEEEEcCChhhHHH-HHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHH
Confidence               25788899999999987765543 3345677766553 7899999999999985421            12334566


Q ss_pred             HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +++..|...+++|||++..|+++.|+..+++...
T Consensus       147 lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  147 LAKEIGAVKYLECSALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             HHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence            6776776789999999999999999999888765

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.63  E-value=9.3e-15  Score=124.74  Aligned_cols=147  Identities=16%  Similarity=0.146  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEe-----eCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMT-----KADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~-----~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ++|+++|.+|||||||++++.+..+... .++.|.+.........     .....+.+|||+|...+.      .    .
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~------~----l   70 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVK------S----T   70 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHH------H----H
Confidence            4799999999999999999998765432 1222222211111111     112467899999986431      1    1


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-------------------CCCCCcEEEEEeCCCCCCChh
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-------------------APPKQKRVLCMNKVDLVTKKK  274 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-------------------~~~~~p~ivV~NK~Dl~~~~~  274 (322)
                      .  -..+..+|++|+|||++++.+..  .+..|+..+...                   ...+.|+++|+||+|+.+.+.
T Consensus        71 ~--~~~yr~ad~iIlVyDvtn~~Sf~--~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~  146 (202)
T cd04102          71 R--AVFYNQVNGIILVHDLTNRKSSQ--NLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE  146 (202)
T ss_pred             H--HHHhCcCCEEEEEEECcChHHHH--HHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc
Confidence            1  13478899999999998764443  455676665431                   124689999999999976432


Q ss_pred             H----HHHHHHHHhcCCCCCcEEEeecCCCC
Q 020714          275 D----LLKVAEQFKHLPGYERIFMTSGLKGA  301 (322)
Q Consensus       275 ~----~~~~~~~~~~~~~~~~~~~iSa~~g~  301 (322)
                      .    .......+++..+.+ .++.+|+.+.
T Consensus       147 ~~~~~~~~~~~~ia~~~~~~-~i~~~c~~~~  176 (202)
T cd04102         147 SSGNLVLTARGFVAEQGNAE-EINLNCTNGR  176 (202)
T ss_pred             cchHHHhhHhhhHHHhcCCc-eEEEecCCcc
Confidence            1    112234456666664 6777887554

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=5e-15  Score=120.45  Aligned_cols=162  Identities=15%  Similarity=0.172  Sum_probs=112.4

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      .....+|+++|-.|+||||++..|...++..+.++.|......    ...+..+.+||..|+....+..           
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v----~ykn~~f~vWDvGGq~k~R~lW-----------   78 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETV----EYKNISFTVWDVGGQEKLRPLW-----------   78 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEE----EEcceEEEEEecCCCcccccch-----------
Confidence            3456889999999999999999998887776655555544433    3568899999999996543321           


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCCChhH--HHHHH--HHHhcCCCCC
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTKKKD--LLKVA--EQFKHLPGYE  290 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~~~~~--~~~~~--~~~~~~~~~~  290 (322)
                       ..++.+.+++|+|+|.+++....+  ..+.+.. +......+.|+++.+||.|+...-..  +.+..  ..+....+  
T Consensus        79 -~~Y~~~t~~lIfVvDS~Dr~Ri~e--ak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w--  153 (181)
T KOG0070|consen   79 -KHYFQNTQGLIFVVDSSDRERIEE--AKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW--  153 (181)
T ss_pred             -hhhccCCcEEEEEEeCCcHHHHHH--HHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc--
Confidence             135688899999999977543322  3333333 33333457899999999999865321  11111  11112111  


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      .+..|+|.+|+|+.|.++|+...+...
T Consensus       154 ~iq~~~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  154 HIQSTCAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             EEeeccccccccHHHHHHHHHHHHhcc
Confidence            478899999999999999999988653

>PRK12288 GTPase RsgA; Reviewed

Probab=99.62  E-value=1.6e-15  Score=139.26  Aligned_cols=156  Identities=17%  Similarity=0.135  Sum_probs=103.8

Q ss_pred             cccCCCCCC-CCCCCCCCCC---ChhhHHHHHHhhCCeEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020714           53 SYFRIPTID-DPQNNNAAKK---QEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEE  127 (322)
Q Consensus        53 ~da~~p~~~-~~k~dl~~~~---~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  127 (322)
                      .+..+|.+. .||+||.+..   ....|..+|...+..+++.++ ++.|...+.              ..+..       
T Consensus       147 ~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~--------------~~L~~-------  205 (347)
T PRK12288        147 ETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELE--------------AALTG-------  205 (347)
T ss_pred             HhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHH--------------HHHhh-------
Confidence            344455555 5999998754   357788888888888999998 788877661              11111       


Q ss_pred             HHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCC-------ceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------TTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       128 ~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                                  ..++|+|.||||||||||+|++.....++..++       ||+......+..+   ..|+||||+..+
T Consensus       206 ------------ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~  270 (347)
T PRK12288        206 ------------RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF  270 (347)
T ss_pred             ------------CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence                        127899999999999999999876655554442       5555444333222   379999999987


Q ss_pred             CCC-CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714          201 KSG-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER  249 (322)
Q Consensus       201 ~~~-~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~  249 (322)
                      ... ...+.+...|.........|.     |.-+.|..++.+.+...++.
T Consensus       271 ~l~~~~~~~l~~~F~ei~~~~~~Cr-----F~dC~H~~EpgCaV~~Av~~  315 (347)
T PRK12288        271 GLWHLEPEQVTQGFVEFRDYLGTCK-----FRDCKHDDDPGCALREAVEE  315 (347)
T ss_pred             cCCCCCHHHHHHhhHHHHHHhcCCC-----CCCCccCCCCCChHHHHHHc
Confidence            653 344555566665555445544     44456667888877766653

>PRK00049 elongation factor Tu; Reviewed

Probab=99.62  E-value=7.6e-15  Score=137.98  Aligned_cols=163  Identities=17%  Similarity=0.196  Sum_probs=108.4

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCee-------e--------eecCCCCceeeeEEEEEeeCCccEEEEeCCCccc
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKV-------A--------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML  199 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~-------~--------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~  199 (322)
                      .....++|+++|.+++|||||+++|++...       .        ......|.|.+.....+...+..+.|+||||+..
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence            345678999999999999999999986210       0        1112456777765554555677899999999752


Q ss_pred             CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE-EEEeCCCCCCChhHH--
Q 020714          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LCMNKVDLVTKKKDL--  276 (322)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i-vV~NK~Dl~~~~~~~--  276 (322)
                                  ....+...+..+|++++|+|+..+...+......++...+      .|.+ +++||+|+.......  
T Consensus        88 ------------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g------~p~iiVvvNK~D~~~~~~~~~~  149 (396)
T PRK00049         88 ------------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG------VPYIVVFLNKCDMVDDEELLEL  149 (396)
T ss_pred             ------------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcC------CCEEEEEEeecCCcchHHHHHH
Confidence                        2344455678899999999998765555444555554433      4565 689999997532222  


Q ss_pred             -H-HHHHHHhcC---CCCCcEEEeecCCCC----------CHHHHHHHHHHHhh
Q 020714          277 -L-KVAEQFKHL---PGYERIFMTSGLKGA----------GLKALTQYLMEQFK  315 (322)
Q Consensus       277 -~-~~~~~~~~~---~~~~~~~~iSa~~g~----------gi~el~~~i~~~l~  315 (322)
                       . +....+...   ....+++++||++|.          |+..|++.|...+.
T Consensus       150 ~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence             1 222222221   122479999999986          67888888887653

>PLN03127 Elongation factor Tu; Provisional

Probab=99.62  E-value=9.2e-15  Score=138.85  Aligned_cols=162  Identities=19%  Similarity=0.192  Sum_probs=106.8

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC------eee---------eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT------KVA---------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      .+..++|+++|..++|||||+++|.+.      ...         ......|.|.+.....+...+..+.|+||||+..+
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            356789999999999999999999731      100         11223677877766666666778999999998632


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHHH-
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLLK-  278 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~~-  278 (322)
                                  +..+...+..+|++++|+|+..+...++.....++..++      +| +|+|+||+|+.......+. 
T Consensus       138 ------------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~g------ip~iIvviNKiDlv~~~~~~~~i  199 (447)
T PLN03127        138 ------------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG------VPSLVVFLNKVDVVDDEELLELV  199 (447)
T ss_pred             ------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC------CCeEEEEEEeeccCCHHHHHHHH
Confidence                        333334455689999999997766555555555555443      45 5789999999864322221 


Q ss_pred             --HHHHHhcCCC----CCcEEEeecC---CCCC-------HHHHHHHHHHHhh
Q 020714          279 --VAEQFKHLPG----YERIFMTSGL---KGAG-------LKALTQYLMEQFK  315 (322)
Q Consensus       279 --~~~~~~~~~~----~~~~~~iSa~---~g~g-------i~el~~~i~~~l~  315 (322)
                        ....+....+    ..+++++||.   +|.|       +.+|+++|...+.
T Consensus       200 ~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        200 EMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence              1222222111    2468888876   5555       7889999888764

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.62  E-value=6.8e-15  Score=138.74  Aligned_cols=149  Identities=18%  Similarity=0.291  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCe--eee------------------------------ecCCCCceeeeEEEEEeeCCc
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTK--VAA------------------------------VSRKTNTTTHEVLGVMTKADT  187 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~--~~~------------------------------~~~~~~~t~~~~~~~~~~~~~  187 (322)
                      ++|+++|..++|||||+++|+...  ...                              ....-|.|.+.....+...+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            479999999999999999986321  000                              011124556655555656677


Q ss_pred             cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV  267 (322)
Q Consensus       188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~  267 (322)
                      .+.|+||||+..+            ...+...+..+|++++|+|+..+...+......++..++.     .++++|+||+
T Consensus        81 ~~~liDtPGh~~f------------~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~-----~~iivviNK~  143 (406)
T TIGR02034        81 KFIVADTPGHEQY------------TRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGI-----RHVVLAVNKM  143 (406)
T ss_pred             EEEEEeCCCHHHH------------HHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCC-----CcEEEEEEec
Confidence            8999999997532            2233345678899999999987766655555555555542     2489999999


Q ss_pred             CCCCChh-HHHHHHHH---HhcCCCC--CcEEEeecCCCCCHHH
Q 020714          268 DLVTKKK-DLLKVAEQ---FKHLPGY--ERIFMTSGLKGAGLKA  305 (322)
Q Consensus       268 Dl~~~~~-~~~~~~~~---~~~~~~~--~~~~~iSa~~g~gi~e  305 (322)
                      |+..... ..+.....   +....++  .+++++||++|+|+++
T Consensus       144 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       144 DLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            9975332 22222222   2222222  3699999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.61  E-value=4.8e-15  Score=115.39  Aligned_cols=158  Identities=18%  Similarity=0.231  Sum_probs=107.1

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ...+.++|-.++|||||+|.+..+...   ...+.|+......+..++..+.+||.||+..             ++..|+
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gGq~r-------------frsmWe   83 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------------FRSMWE   83 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCCCcc-------------HHHHHH
Confidence            466899999999999999987664332   1222233333344557788899999999875             445555


Q ss_pred             h-cccccEEEEEEeCCCCCCCcH--HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh--cC-CCCCcE
Q 020714          219 A-VNLFEVLMVVFDVHRHLTSPD--SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HL-PGYERI  292 (322)
Q Consensus       219 ~-~~~ad~ii~v~D~s~~~~~~~--~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~--~~-~~~~~~  292 (322)
                      . ++.+++++|++|++++..-..  .++..++   ........|+++.+||.|+..+-... ....++.  .. .....+
T Consensus        84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL---~k~~l~gip~LVLGnK~d~~~AL~~~-~li~rmgL~sitdREvcC  159 (186)
T KOG0075|consen   84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLL---DKPSLTGIPLLVLGNKIDLPGALSKI-ALIERMGLSSITDREVCC  159 (186)
T ss_pred             HHhhcCcEEEEEeecCCcccchhhHHHHHHHh---cchhhcCCcEEEecccccCcccccHH-HHHHHhCccccccceEEE
Confidence            4 588999999999987433222  1333333   33444578899999999998764322 2222221  11 122358


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhh
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      |.+||++..||+.+.+||+++-..
T Consensus       160 ~siScke~~Nid~~~~Wli~hsk~  183 (186)
T KOG0075|consen  160 FSISCKEKVNIDITLDWLIEHSKS  183 (186)
T ss_pred             EEEEEcCCccHHHHHHHHHHHhhh
Confidence            999999999999999999988654

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.61  E-value=1.2e-14  Score=139.22  Aligned_cols=155  Identities=17%  Similarity=0.237  Sum_probs=100.7

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeee--e------------ec------------------CCCCceeeeEEEEE
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVA--A------------VS------------------RKTNTTTHEVLGVM  182 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~--~------------~~------------------~~~~~t~~~~~~~~  182 (322)
                      ..+..++|+++|.+++|||||+++|+...-.  .            .+                  ..-|.|.+.....+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            3456799999999999999999998743110  0            01                  01234455544445


Q ss_pred             eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEE
Q 020714          183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL  262 (322)
Q Consensus       183 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~iv  262 (322)
                      ...+..+.|+||||+..+            ...+...+..+|++++|+|+..+...+......++..++.     .++++
T Consensus       103 ~~~~~~i~~iDTPGh~~f------------~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~-----~~iIv  165 (474)
T PRK05124        103 STEKRKFIIADTPGHEQY------------TRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGI-----KHLVV  165 (474)
T ss_pred             ccCCcEEEEEECCCcHHH------------HHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCC-----CceEE
Confidence            566778999999996422            2233344688899999999987765554444445555442     35899


Q ss_pred             EEeCCCCCCChh-HHHHHHHHH---hcCC---CCCcEEEeecCCCCCHHHH
Q 020714          263 CMNKVDLVTKKK-DLLKVAEQF---KHLP---GYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       263 V~NK~Dl~~~~~-~~~~~~~~~---~~~~---~~~~~~~iSa~~g~gi~el  306 (322)
                      |+||+|+..... ........+   ....   ...+++++||++|+|++++
T Consensus       166 vvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        166 AVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             EEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            999999975322 222222222   2222   2357999999999999864

>PRK10218 GTP-binding protein; Provisional

Probab=99.61  E-value=2.7e-14  Score=139.79  Aligned_cols=161  Identities=19%  Similarity=0.215  Sum_probs=108.1

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC--eeee-------------ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT--KVAA-------------VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS  202 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~--~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~  202 (322)
                      ...+|+++|..++|||||+++|+..  .+..             .....|.|.......+...+..+.+|||||...+..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            3467999999999999999999852  1111             112345565555555666788999999999875421


Q ss_pred             CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh--hHHHHHH
Q 020714          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVA  280 (322)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~--~~~~~~~  280 (322)
                                  .+...+..+|++++|+|+..+...+...+...+..   .   +.|.++|+||+|+....  ....+..
T Consensus        84 ------------~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~---~---gip~IVviNKiD~~~a~~~~vl~ei~  145 (607)
T PRK10218         84 ------------EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA---Y---GLKPIVVINKVDRPGARPDWVVDQVF  145 (607)
T ss_pred             ------------HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH---c---CCCEEEEEECcCCCCCchhHHHHHHH
Confidence                        12234678899999999977644433333333322   2   46789999999987543  2333334


Q ss_pred             HHHhcCC-----CCCcEEEeecCCCC----------CHHHHHHHHHHHhhh
Q 020714          281 EQFKHLP-----GYERIFMTSGLKGA----------GLKALTQYLMEQFKD  316 (322)
Q Consensus       281 ~~~~~~~-----~~~~~~~iSa~~g~----------gi~el~~~i~~~l~~  316 (322)
                      ..+....     ...|++++||++|.          |+..|++.|.+.+..
T Consensus       146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~  196 (607)
T PRK10218        146 DLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA  196 (607)
T ss_pred             HHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence            4432211     12369999999998          689999999988764

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.61  E-value=1.8e-14  Score=141.03  Aligned_cols=159  Identities=21%  Similarity=0.276  Sum_probs=95.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe------------------eCCccEEEEeCCCcc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT------------------KADTQICIFDTPGLM  198 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~------------------~~~~~~~l~DtpG~~  198 (322)
                      .+++.|+++|.+|+|||||+|+|.+....... ..+.|.+.-.....                  ..-..+.||||||+.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~-~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE-AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCC-CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            46778999999999999999999876433211 11111110000000                  000137899999987


Q ss_pred             cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh----
Q 020714          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK----  274 (322)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~----  274 (322)
                      .+..      .      ....+..+|++++|+|++++...+.......+..      .+.|+++++||+|+...-.    
T Consensus        83 ~f~~------~------~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~------~~vpiIvviNK~D~~~~~~~~~~  144 (586)
T PRK04004         83 AFTN------L------RKRGGALADIAILVVDINEGFQPQTIEAINILKR------RKTPFVVAANKIDRIPGWKSTED  144 (586)
T ss_pred             HHHH------H------HHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCchhhhhhcC
Confidence            5421      1      1123567899999999987543333333333322      2567999999999853100    


Q ss_pred             ----------------HH----HHHHHHHh-------------cCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          275 ----------------DL----LKVAEQFK-------------HLPGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       275 ----------------~~----~~~~~~~~-------------~~~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                                      ..    .+....+.             +..+..+++++||++|+|+++|++.+....
T Consensus       145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                            00    00111111             122345799999999999999999886533

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.60  E-value=1.6e-14  Score=143.65  Aligned_cols=153  Identities=18%  Similarity=0.260  Sum_probs=99.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeee----------cCC----------------------CCceeeeEEEEEe
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV----------SRK----------------------TNTTTHEVLGVMT  183 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~----------~~~----------------------~~~t~~~~~~~~~  183 (322)
                      .+..++|+++|.+|+|||||+|+|+...-...          +..                      .|.|.+.....+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            34568899999999999999999885321111          011                      2444554444555


Q ss_pred             eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ..+..+.|+||||+..+            .......+..+|++++|+|+..+...+......++..++.     .++++|
T Consensus       101 ~~~~~~~liDtPG~~~f------------~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~-----~~iivv  163 (632)
T PRK05506        101 TPKRKFIVADTPGHEQY------------TRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGI-----RHVVLA  163 (632)
T ss_pred             cCCceEEEEECCChHHH------------HHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCC-----CeEEEE
Confidence            66778999999997532            2223345678899999999987765555445555555442     358899


Q ss_pred             EeCCCCCCCh-hHHHHHHHH---HhcCCCC--CcEEEeecCCCCCHHH
Q 020714          264 MNKVDLVTKK-KDLLKVAEQ---FKHLPGY--ERIFMTSGLKGAGLKA  305 (322)
Q Consensus       264 ~NK~Dl~~~~-~~~~~~~~~---~~~~~~~--~~~~~iSa~~g~gi~e  305 (322)
                      +||+|+.... .........   +....++  .+++++||++|.|+++
T Consensus       164 vNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        164 VNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             EEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            9999997522 222222222   2222233  3599999999999984

>PTZ00099 rab6; Provisional

Probab=99.60  E-value=9e-15  Score=122.38  Aligned_cols=116  Identities=18%  Similarity=0.135  Sum_probs=81.0

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      ...+.||||||...+...            .-..+..+|++|+|||++++.+.  ..+..|+..+.....++.|+++|+|
T Consensus        28 ~v~l~iwDt~G~e~~~~~------------~~~~~~~ad~~ilv~D~t~~~sf--~~~~~w~~~i~~~~~~~~piilVgN   93 (176)
T PTZ00099         28 PVRLQLWDTAGQERFRSL------------IPSYIRDSAAAIVVYDITNRQSF--ENTTKWIQDILNERGKDVIIALVGN   93 (176)
T ss_pred             EEEEEEEECCChHHhhhc------------cHHHhCCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEE
Confidence            457889999998754321            11246889999999999765433  2344566655433335688999999


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      |+|+.............+...++. .+++|||++|.||+++|++|.+.+.+
T Consensus        94 K~DL~~~~~v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         94 KTDLGDLRKVTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CcccccccCCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            999975332222233344444444 48999999999999999999999865

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.60  E-value=2.3e-14  Score=140.37  Aligned_cols=157  Identities=17%  Similarity=0.250  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC--eeee-------------ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT--KVAA-------------VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS  205 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~--~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~  205 (322)
                      +|+++|..++|||||+++|+..  .+..             .....|.|.......+...+..+.||||||+..|.    
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~----   78 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG----   78 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH----
Confidence            6999999999999999999742  1111             11123555555555566778899999999986431    


Q ss_pred             hhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh--hHHHHHHHHH
Q 020714          206 HKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVAEQF  283 (322)
Q Consensus       206 ~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~--~~~~~~~~~~  283 (322)
                              ......+..+|++++|+|+..+...+...   ++..+...   +.|.++|+||+|+....  ....+....+
T Consensus        79 --------~ev~~~l~~aD~alLVVDa~~G~~~qT~~---~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~  144 (594)
T TIGR01394        79 --------GEVERVLGMVDGVLLLVDASEGPMPQTRF---VLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLF  144 (594)
T ss_pred             --------HHHHHHHHhCCEEEEEEeCCCCCcHHHHH---HHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHH
Confidence                    12234467789999999997654333333   33333322   46799999999996543  2233333333


Q ss_pred             hc------CCCCCcEEEeecCCCC----------CHHHHHHHHHHHhhh
Q 020714          284 KH------LPGYERIFMTSGLKGA----------GLKALTQYLMEQFKD  316 (322)
Q Consensus       284 ~~------~~~~~~~~~iSa~~g~----------gi~el~~~i~~~l~~  316 (322)
                      ..      ...+ +++++||++|.          |++.|++.|.+.+..
T Consensus       145 ~~~g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       145 AELGADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             HhhccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence            21      1123 69999999996          899999999998764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.60  E-value=1.1e-15  Score=134.86  Aligned_cols=145  Identities=20%  Similarity=0.232  Sum_probs=100.3

Q ss_pred             CCCCCCCCCChh--hHHHHHHhhCCeEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCc
Q 020714           63 PQNNNAAKKQEP--TWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS  139 (322)
Q Consensus        63 ~k~dl~~~~~~~--~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  139 (322)
                      ||+||.+.+...  ++...|.+.++.+++.++ ++.+...+              ...+.                   +
T Consensus       118 nK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l--------------~~~l~-------------------~  164 (301)
T COG1162         118 NKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEEL--------------AELLA-------------------G  164 (301)
T ss_pred             EccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHH--------------HHHhc-------------------C
Confidence            899999887777  699999999999999998 77777766              12221                   2


Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCe---eeeecCCC----CceeeeEEEEEeeCCccEEEEeCCCcccCCC-CCChhhHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTK---VAAVSRKT----NTTTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKV  211 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~---~~~~~~~~----~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~  211 (322)
                      -..+++|++|||||||+|+|.+..   +..++...    +||+......+..+|   .++|||||..+.- ....+.+..
T Consensus       165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l~~~~~e~l~~  241 (301)
T COG1162         165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGLAHLEPEDLVQ  241 (301)
T ss_pred             CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCcccCCHHHHHH
Confidence            247899999999999999998743   22333333    455555544343345   9999999998775 455566666


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHH
Q 020714          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (322)
Q Consensus       212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~  248 (322)
                      .|.........|.     |.-+.|..++.+.+...++
T Consensus       242 ~F~ef~~~~~~Ck-----Fr~C~H~~EPgCav~~av~  273 (301)
T COG1162         242 AFPEFAELARQCK-----FRDCTHTHEPGCAVKAAVE  273 (301)
T ss_pred             HhHHHHHHhcCCC-----CCCCCCCCCCCcHHHHHHH
Confidence            6666655555443     4445666777776666554

>PLN03126 Elongation factor Tu; Provisional

Probab=99.59  E-value=3.5e-14  Score=135.65  Aligned_cols=148  Identities=18%  Similarity=0.163  Sum_probs=96.8

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCee---------------eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV---------------AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      .+..++|+++|.+++|||||+++|+....               .......|.|.+.....+...+..+.|+||||+..+
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            35678999999999999999999985210               011223456666555555566788999999998642


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHHH-
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLLK-  278 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~~-  278 (322)
                                  +..++..+..+|++++|+|+..+...+.......+..++      +| +++++||+|+.......+. 
T Consensus       158 ------------~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~g------i~~iIvvvNK~Dl~~~~~~~~~i  219 (478)
T PLN03126        158 ------------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG------VPNMVVFLNKQDQVDDEELLELV  219 (478)
T ss_pred             ------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCeEEEEEecccccCHHHHHHHH
Confidence                        344455667889999999998765444434444444333      45 7889999999764322221 


Q ss_pred             --HHHHHhcCC----CCCcEEEeecCCCC
Q 020714          279 --VAEQFKHLP----GYERIFMTSGLKGA  301 (322)
Q Consensus       279 --~~~~~~~~~----~~~~~~~iSa~~g~  301 (322)
                        ....+....    ...+++++||.+|.
T Consensus       220 ~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        220 ELEVRELLSSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence              222222222    13479999999885

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.58  E-value=3.4e-14  Score=126.59  Aligned_cols=141  Identities=19%  Similarity=0.204  Sum_probs=91.5

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC-----eeeee------------cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT-----KVAAV------------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG  203 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~-----~~~~~------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~  203 (322)
                      +|+++|.+|+|||||+|+|+..     +...+            ....|.|.+.....+...+..+.++||||...+   
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df---   77 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF---   77 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence            4899999999999999998631     11111            123356666666666677889999999997642   


Q ss_pred             CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-hHHHHHHHH
Q 020714          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQ  282 (322)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-~~~~~~~~~  282 (322)
                               ...+...+..+|++++|+|+..+...+...+...+..   .   ++|+++++||+|+.... .........
T Consensus        78 ---------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~---~---~~p~ivviNK~D~~~a~~~~~~~~l~~  142 (270)
T cd01886          78 ---------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR---Y---NVPRIAFVNKMDRTGADFFRVVEQIRE  142 (270)
T ss_pred             ---------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence                     1233455677799999999987654444444443333   2   36799999999997532 222233333


Q ss_pred             HhcCCCCCcEEEeecCC
Q 020714          283 FKHLPGYERIFMTSGLK  299 (322)
Q Consensus       283 ~~~~~~~~~~~~iSa~~  299 (322)
                      ......++.++++|+..
T Consensus       143 ~l~~~~~~~~~Pisa~~  159 (270)
T cd01886         143 KLGANPVPLQLPIGEED  159 (270)
T ss_pred             HhCCCceEEEeccccCC
Confidence            33344455568888763

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.58  E-value=3.4e-14  Score=121.71  Aligned_cols=157  Identities=17%  Similarity=0.223  Sum_probs=92.3

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe--eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +|+++|++|||||||+++|....+....  +.++.........  ..+..+.+|||||+..+         .   .....
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~--~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~---------~---~~~~~   67 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTV--TSIEPNVATFILNSEGKGKKFRLVDVPGHPKL---------R---DKLLE   67 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcc--CcEeecceEEEeecCCCCceEEEEECCCCHHH---------H---HHHHH
Confidence            5899999999999999999987543221  1111111111111  13567899999998632         1   11223


Q ss_pred             hcccc-cEEEEEEeCCCCCCCcHHHHHHHHHHhcc---cCCCCCcEEEEEeCCCCCCChh------HHHHHHHHHh----
Q 020714          219 AVNLF-EVLMVVFDVHRHLTSPDSRVIRLIERMGK---QAPPKQKRVLCMNKVDLVTKKK------DLLKVAEQFK----  284 (322)
Q Consensus       219 ~~~~a-d~ii~v~D~s~~~~~~~~~~~~~l~~~~~---~~~~~~p~ivV~NK~Dl~~~~~------~~~~~~~~~~----  284 (322)
                      .+..+ +++|+|+|+.... ........++..+..   ...+..|+++|+||+|+.....      .++.++..+.    
T Consensus        68 ~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~  146 (203)
T cd04105          68 TLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRS  146 (203)
T ss_pred             HHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence            45666 9999999997642 111223333322211   1124688999999999875421      1111111100    


Q ss_pred             ---------------------------cCCCCCcEEEeecCCCC-CHHHHHHHHHH
Q 020714          285 ---------------------------HLPGYERIFMTSGLKGA-GLKALTQYLME  312 (322)
Q Consensus       285 ---------------------------~~~~~~~~~~iSa~~g~-gi~el~~~i~~  312 (322)
                                                 .......++++|++.+. |++.+.+||.+
T Consensus       147 ~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         147 KSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             ccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                                       00111247889998876 69999999875

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.58  E-value=2.7e-15  Score=117.05  Aligned_cols=115  Identities=16%  Similarity=0.214  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeee---eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVA---AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ||+|+|.+||||||||++|.+....   ......+.+..............+.+||++|...+.....            
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~------------   68 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ------------   68 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH------------
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc------------
Confidence            6899999999999999999987755   1122222332222222222233588999999864322111            


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCC
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVD  268 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~D  268 (322)
                      ..+..+|++++|||.++..+.... .+..++..+.... .+.|+++|+||.|
T Consensus        69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            115667999999999765433331 3455666666432 3489999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.58  E-value=9e-14  Score=122.24  Aligned_cols=138  Identities=21%  Similarity=0.212  Sum_probs=90.5

Q ss_pred             hhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCC-CCChhhHH
Q 020714          132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVK  210 (322)
Q Consensus       132 ~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~  210 (322)
                      .++.....++|+++|.+|||||||+|+|++.....++...++|...........+..+.++||||+..... ........
T Consensus        24 ~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~  103 (249)
T cd01853          24 GKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKIL  103 (249)
T ss_pred             hhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHH
Confidence            34556678999999999999999999999988777776666676666555556788899999999985421 01111111


Q ss_pred             HHHHHHHhhcccccEEEEEEeCCC-CCCCcHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCCC
Q 020714          211 VRVESAWSAVNLFEVLMVVFDVHR-HLTSPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       211 ~~~~~~~~~~~~ad~ii~v~D~s~-~~~~~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      ..+.+.+. -...|++++|..++. +....+..+...+.. ++.. . -.++++|+||+|...+
T Consensus       104 ~~I~~~l~-~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~-i-~~~~ivV~T~~d~~~p  164 (249)
T cd01853         104 SSIKRYLK-KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS-I-WRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHHHh-ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh-h-HhCEEEEEeCCccCCC
Confidence            12222221 135688888876643 233444455555555 3321 1 1459999999999754

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PLN00023 GTP-binding protein; Provisional

Probab=99.57  E-value=1.7e-14  Score=129.47  Aligned_cols=140  Identities=19%  Similarity=0.210  Sum_probs=88.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEee-------------CCccEEEEeCCCcccCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTK-------------ADTQICIFDTPGLMLNK  201 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~-------------~~~~~~l~DtpG~~~~~  201 (322)
                      ....+||+++|..|||||||++++.+..+.. ...+.|.+.......+..             ....+.||||+|...+.
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            3456899999999999999999999875432 222333332211111110             12458899999987542


Q ss_pred             CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC------------CCCCcEEEEEeCCCC
Q 020714          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA------------PPKQKRVLCMNKVDL  269 (322)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~------------~~~~p~ivV~NK~Dl  269 (322)
                      .          +..  ..+..+|++|+|||+++..+.  ..+..|+..+....            ..++|+++|+||+|+
T Consensus        98 s----------L~~--~yyr~AdgiILVyDITdr~SF--enL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL  163 (334)
T PLN00023         98 D----------CRS--LFYSQINGVIFVHDLSQRRTK--TSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI  163 (334)
T ss_pred             h----------hhH--HhccCCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence            2          111  247889999999999774433  34556666665321            124789999999999


Q ss_pred             CCCh---h---HHHHHHHHHhcCCCC
Q 020714          270 VTKK---K---DLLKVAEQFKHLPGY  289 (322)
Q Consensus       270 ~~~~---~---~~~~~~~~~~~~~~~  289 (322)
                      ....   .   +..+..+.+++.+++
T Consensus       164 ~~~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        164 APKEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             cccccccccccccHHHHHHHHHHcCC
Confidence            6542   1   234566666665554

>cd04167 Snu114p Snu114p subfamily

Probab=99.57  E-value=3.8e-14  Score=122.33  Aligned_cols=156  Identities=19%  Similarity=0.225  Sum_probs=90.7

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeee------------------cCCCCceeeeEEEEEe-----eCCccEEEEeCCCc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAV------------------SRKTNTTTHEVLGVMT-----KADTQICIFDTPGL  197 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~------------------~~~~~~t~~~~~~~~~-----~~~~~~~l~DtpG~  197 (322)
                      +|+++|.+|+|||||+++|+.......                  ....+.+.......+.     .....+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            489999999999999999986432111                  0011222221111111     12357899999998


Q ss_pred             ccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC-----
Q 020714          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----  272 (322)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~-----  272 (322)
                      ..+.            ..+...+..+|++++|+|+..+......   .++......   +.|+++|+||+|+...     
T Consensus        82 ~~f~------------~~~~~~~~~aD~~llVvD~~~~~~~~~~---~~~~~~~~~---~~p~iiviNK~D~~~~~~~l~  143 (213)
T cd04167          82 VNFM------------DEVAAALRLSDGVVLVVDVVEGVTSNTE---RLIRHAILE---GLPIVLVINKIDRLILELKLP  143 (213)
T ss_pred             cchH------------HHHHHHHHhCCEEEEEEECCCCCCHHHH---HHHHHHHHc---CCCEEEEEECcccCcccccCC
Confidence            7531            1233456678999999999765443322   222332222   3679999999998621     


Q ss_pred             -hh---HHHH---HHHHHhcCCCC----------CcEEEeecCCCCCHH--------HHHHHHHHHh
Q 020714          273 -KK---DLLK---VAEQFKHLPGY----------ERIFMTSGLKGAGLK--------ALTQYLMEQF  314 (322)
Q Consensus       273 -~~---~~~~---~~~~~~~~~~~----------~~~~~iSa~~g~gi~--------el~~~i~~~l  314 (322)
                       .+   ...+   ....+....+.          .++++.|++.|+++.        +|++.|.+.+
T Consensus       144 ~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~  210 (213)
T cd04167         144 PNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI  210 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence             11   1111   11112211111          238899999999887        7777766554

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=3e-14  Score=132.72  Aligned_cols=161  Identities=16%  Similarity=0.209  Sum_probs=109.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe--------------eeeecCCCCceeeeEEEEEeeCC---ccEEEEeCCCcccC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK--------------VAAVSRKTNTTTHEVLGVMTKAD---TQICIFDTPGLMLN  200 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~--------------~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~  200 (322)
                      +.-++.|+-.-.-|||||..+|+...              -.++...-|.|...+...+.+.+   ..+.++||||+.+|
T Consensus        59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF  138 (650)
T KOG0462|consen   59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF  138 (650)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence            34568888888999999999987421              11233445777766666555544   67889999999987


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHH
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKV  279 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~  279 (322)
                      ....+            ..+..||++++|+|++.+...+  .+......+..    +..+|.|+||+|+...+. ..+..
T Consensus       139 s~EVs------------Rslaac~G~lLvVDA~qGvqAQ--T~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q  200 (650)
T KOG0462|consen  139 SGEVS------------RSLAACDGALLVVDASQGVQAQ--TVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQ  200 (650)
T ss_pred             cceeh------------ehhhhcCceEEEEEcCcCchHH--HHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHH
Confidence            54222            3456789999999998765333  33333333332    234999999999987542 22222


Q ss_pred             HHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          280 AEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       280 ~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ...+....+ .+++.+|||+|.|+++++++|++.+..-
T Consensus       201 ~~~lF~~~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP  237 (650)
T KOG0462|consen  201 LFELFDIPP-AEVIYVSAKTGLNVEELLEAIIRRVPPP  237 (650)
T ss_pred             HHHHhcCCc-cceEEEEeccCccHHHHHHHHHhhCCCC
Confidence            333333333 3699999999999999999999988753

>PTZ00258 GTP-binding protein; Provisional

Probab=99.56  E-value=1.2e-13  Score=127.84  Aligned_cols=92  Identities=20%  Similarity=0.215  Sum_probs=71.4

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC-----------------CccEEEEeCCCcc
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-----------------DTQICIFDTPGLM  198 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~l~DtpG~~  198 (322)
                      ....++|+++|.||||||||+|+|++.. ..+++.|++|.....+.+...                 ...+.++||||+.
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            3567899999999999999999998876 478888999988887775443                 2348999999998


Q ss_pred             cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCC
Q 020714          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (322)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s  233 (322)
                      .....     ....-.+++..++.+|++++|+|+.
T Consensus        97 ~ga~~-----g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASE-----GEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcc-----hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            54321     1122346677789999999999984

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=9.4e-14  Score=130.08  Aligned_cols=163  Identities=20%  Similarity=0.239  Sum_probs=109.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee---CCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      .+++-|.++|.--.|||||+..+.+..++. +...|.|-+.-......   ....++|+||||+.-|.      .++.  
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt------~mRa--   73 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFT------AMRA--   73 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHH------HHHh--
Confidence            467789999999999999999998877653 33344444432222322   35789999999986432      1111  


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh-------cC
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK-------HL  286 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~-------~~  286 (322)
                          .-..-+|.+++|+|+.++...+.......++.      .+.|+++++||+|.....  ......++.       .+
T Consensus        74 ----RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~------a~vP~iVAiNKiDk~~~n--p~~v~~el~~~gl~~E~~  141 (509)
T COG0532          74 ----RGASVTDIAILVVAADDGVMPQTIEAINHAKA------AGVPIVVAINKIDKPEAN--PDKVKQELQEYGLVPEEW  141 (509)
T ss_pred             ----cCCccccEEEEEEEccCCcchhHHHHHHHHHH------CCCCEEEEEecccCCCCC--HHHHHHHHHHcCCCHhhc
Confidence                23467799999999988765444333233332      357899999999998643  222222221       23


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLK  320 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~  320 (322)
                      .+...++++||++|+|+++|++.|.-......++
T Consensus       142 gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~elk  175 (509)
T COG0532         142 GGDVIFVPVSAKTGEGIDELLELILLLAEVLELK  175 (509)
T ss_pred             CCceEEEEeeccCCCCHHHHHHHHHHHHHHHhhh
Confidence            3445789999999999999999998766554443

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.55  E-value=1.8e-14  Score=132.93  Aligned_cols=176  Identities=16%  Similarity=0.213  Sum_probs=120.7

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      .+....++++|+||||||||+|.++...+ .+.+.+.||.....+.+...-..++++||||+.......- ..+.-....
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdr-N~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDR-NIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhh-hHHHHHHHH
Confidence            55677899999999999999999887653 4667778888877776666666789999999975332111 111111112


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH---HHHHHHHHhcCCCCCcE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFKHLPGYERI  292 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~  292 (322)
                      ++..++  .+|+|+.|.|..++-.-.....+...++.. ..++|+|+|+||+|+......   -.+....+.+. +..++
T Consensus       243 ALAHLr--aaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~-~~v~v  318 (620)
T KOG1490|consen  243 ALAHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD-GNVKV  318 (620)
T ss_pred             HHHHhh--hhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhc-cCceE
Confidence            223332  578999999887766655444555555532 346889999999999876432   22333444443 33469


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +.+|+.+-+|+.++....++.+...
T Consensus       319 ~~tS~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  319 VQTSCVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             EEecccchhceeeHHHHHHHHHHHH
Confidence            9999999999999888888777654

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.55  E-value=8.8e-14  Score=132.36  Aligned_cols=151  Identities=19%  Similarity=0.267  Sum_probs=96.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC--eee----------------------------eecCCCCceeeeEEEEEeeCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT--KVA----------------------------AVSRKTNTTTHEVLGVMTKAD  186 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~--~~~----------------------------~~~~~~~~t~~~~~~~~~~~~  186 (322)
                      +..++|+++|..++|||||+.+|+..  ...                            ......|.|.+.....+...+
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            45689999999999999999988641  000                            011223566665555566667


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCC-------CcHHHHHHHHHHhcccCCCCCc
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK  259 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~-------~~~~~~~~~l~~~~~~~~~~~p  259 (322)
                      ..+.|+||||+..|            ...+...+..+|++++|+|+..+..       .+......++..++..     .
T Consensus        85 ~~i~lIDtPGh~~f------------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~-----~  147 (446)
T PTZ00141         85 YYFTIIDAPGHRDF------------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVK-----Q  147 (446)
T ss_pred             eEEEEEECCChHHH------------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCC-----e
Confidence            88999999997632            3444556778999999999977642       2333444444444421     2


Q ss_pred             EEEEEeCCCCCC---ChhHHHH----HHHHHhcCCCC----CcEEEeecCCCCCHHH
Q 020714          260 RVLCMNKVDLVT---KKKDLLK----VAEQFKHLPGY----ERIFMTSGLKGAGLKA  305 (322)
Q Consensus       260 ~ivV~NK~Dl~~---~~~~~~~----~~~~~~~~~~~----~~~~~iSa~~g~gi~e  305 (322)
                      +|+++||+|...   .....+.    ....+.. .++    .+++++||.+|+|+.+
T Consensus       148 iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~-~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        148 MIVCINKMDDKTVNYSQERYDEIKKEVSAYLKK-VGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             EEEEEEccccccchhhHHHHHHHHHHHHHHHHh-cCCCcccceEEEeecccCCCccc
Confidence            789999999532   1122222    2222222 222    4699999999999964

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.54  E-value=6.1e-14  Score=126.25  Aligned_cols=165  Identities=16%  Similarity=0.132  Sum_probs=111.2

Q ss_pred             CCCceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhh
Q 020714           44 NDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIF  101 (322)
Q Consensus        44 ~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~  101 (322)
                      ..+|.++-+.|++-|.++ .                    ||+||.+......|..++...+..+++.++ ++.+...+.
T Consensus        77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~  156 (287)
T cd01854          77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELR  156 (287)
T ss_pred             EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHH
Confidence            378988888888877632 1                    899998775556788888778888888888 777766551


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecC-------CCCce
Q 020714          102 QEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTT  174 (322)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-------~~~~t  174 (322)
                                    ..    +               ....++++|++|||||||||.|++.....++.       ..++|
T Consensus       157 --------------~~----L---------------~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT  203 (287)
T cd01854         157 --------------EY----L---------------KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTT  203 (287)
T ss_pred             --------------hh----h---------------ccceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCccc
Confidence                          11    1               01358999999999999999999865443322       22355


Q ss_pred             eeeEEEEEeeCCccEEEEeCCCcccCC-CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714          175 THEVLGVMTKADTQICIFDTPGLMLNK-SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER  249 (322)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~  249 (322)
                      +......+..   ...++||||+..+. ...........|.........|.     |.-+.|..++.+.+...++.
T Consensus       204 ~~~~~~~~~~---~~~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~~~~C~-----F~~C~H~~Ep~Cav~~av~~  271 (287)
T cd01854         204 THRELFPLPG---GGLLIDTPGFREFGLLHIDPEELAHYFPEFRELAGQCK-----FRDCTHTNEPGCAVKAAVEA  271 (287)
T ss_pred             ceEEEEEcCC---CCEEEECCCCCccCCccCCHHHHHHHhHHHHHHhCCCC-----CCCCcCCCCCCCHHHHHHHc
Confidence            5554432221   23899999998765 44555666666666655555554     43345667888887776653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.54  E-value=1.8e-13  Score=124.48  Aligned_cols=156  Identities=18%  Similarity=0.251  Sum_probs=92.5

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCcee-----------------eeEEEE----------
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTT-----------------HEVLGV----------  181 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t~-----------------~~~~~~----------  181 (322)
                      ...+++.|+|+|+||+|||||++.|..      .++..+...|....                 +.....          
T Consensus        52 ~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~  131 (332)
T PRK09435         52 HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLG  131 (332)
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCccccc
Confidence            345788999999999999999998642      23333222221110                 000000          


Q ss_pred             ------------EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714          182 ------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER  249 (322)
Q Consensus       182 ------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~  249 (322)
                                  +...+.++.|+||+|......               .....+|+++++.+...+  ........-.  
T Consensus       132 ~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~---------------~i~~~aD~vlvv~~p~~g--d~iq~~k~gi--  192 (332)
T PRK09435        132 GVARKTRETMLLCEAAGYDVILVETVGVGQSET---------------AVAGMVDFFLLLQLPGAG--DELQGIKKGI--  192 (332)
T ss_pred             chHHHHHHHHHHHhccCCCEEEEECCCCccchh---------------HHHHhCCEEEEEecCCch--HHHHHHHhhh--
Confidence                        112357899999999974211               023458999999764221  1111111111  


Q ss_pred             hcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcC-----CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          250 MGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       250 ~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~-----~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +.      ...++|+||+|+.....   ...+....+...     .+.++++.+||++|.|+++|+++|.+++.
T Consensus       193 ~E------~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        193 ME------LADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             hh------hhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            11      12589999999986432   111222222211     13368999999999999999999999865

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.54  E-value=2.2e-13  Score=117.84  Aligned_cols=112  Identities=20%  Similarity=0.272  Sum_probs=70.2

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeec---------------CCCCceeeeEEE--EEee--------CCccEEEEeCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVS---------------RKTNTTTHEVLG--VMTK--------ADTQICIFDTP  195 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~---------------~~~~~t~~~~~~--~~~~--------~~~~~~l~Dtp  195 (322)
                      +|+++|..++|||||+++|+...-....               ..-|.|......  .+..        .+..+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            5899999999999999998743211000               011222221111  1211        15678899999


Q ss_pred             CcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (322)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~  270 (322)
                      |+..+.            ..+...+..+|++++|+|+..+...+...+......   .   +.|+++|+||+|+.
T Consensus        82 G~~~f~------------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~---~---~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFS------------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK---E---RVKPVLVINKIDRL  138 (222)
T ss_pred             CccccH------------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH---c---CCCEEEEEECCCcc
Confidence            998542            233455678899999999987655544333332222   2   35799999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.54  E-value=6.3e-14  Score=124.30  Aligned_cols=188  Identities=15%  Similarity=0.185  Sum_probs=105.1

Q ss_pred             HHHHHHHHhhHHHHHHhhh--hccCceEEEEEcCCCCchhHHHHHHhCC-----eeeeecCCCCceeeeEEEEEeeCCcc
Q 020714          116 ALLQAALERQEEEEEEVKE--EDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTHEVLGVMTKADTQ  188 (322)
Q Consensus       116 ~~~~~~l~~~~~~~~~~~~--~~~~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~  188 (322)
                      .+.+..++.++.....+|.  ...+.+.+.|+|.||+|||||++.+++.     ....+....++..+...  +...+.+
T Consensus        79 ~~~~~il~~n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~r--I~~~g~p  156 (290)
T PRK10463         79 EVEIDVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAAR--IRATGTP  156 (290)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHH--HHhcCCc
Confidence            4455566666666665554  3456889999999999999999877643     22333333333222111  1122334


Q ss_pred             EEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHHH----H--------HHhcccCC
Q 020714          189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRL----I--------ERMGKQAP  255 (322)
Q Consensus       189 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~----l--------~~~~~~~~  255 (322)
                      +..+.|.+..        .....++..++..+...+.-+++++.......+.. .+...    +        +.++....
T Consensus       157 vvqi~tG~~C--------hl~a~mv~~Al~~L~~~~~d~liIEnvGnLvcPa~fdlge~~~v~vlsV~eg~dkplKyp~~  228 (290)
T PRK10463        157 AIQVNTGKGC--------HLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHM  228 (290)
T ss_pred             EEEecCCCCC--------cCcHHHHHHHHHHHhhcCCcEEEEECCCCccCCCccchhhceeEEEEECccccccchhccch
Confidence            4444444433        11233444555554444333444444321100000 00000    0        00000011


Q ss_pred             CCCcEEEEEeCCCCCCC-hhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714          256 PKQKRVLCMNKVDLVTK-KKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       256 ~~~p~ivV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      -....++|+||+|+.+. ..+.+.....+...++..+++++||++|+|+++|.+||...
T Consensus       229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        229 FAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            12457999999999864 23566667777777777889999999999999999999874

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=2.6e-14  Score=114.52  Aligned_cols=164  Identities=20%  Similarity=0.222  Sum_probs=109.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecC----CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR----KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      +..+.|+++|..|+|||||+.++........+.    ...+|.....+.+...+..+.+||..|+..             
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~-------------   81 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES-------------   81 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH-------------
Confidence            345789999999999999999876543221111    122344444444555688899999999852             


Q ss_pred             HHHHHh-hcccccEEEEEEeCCCCCCCcHH--HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH--HHHHHHHhcCC
Q 020714          213 VESAWS-AVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL--LKVAEQFKHLP  287 (322)
Q Consensus       213 ~~~~~~-~~~~ad~ii~v~D~s~~~~~~~~--~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~--~~~~~~~~~~~  287 (322)
                      .++.|. ++..|++++++||++++...++.  .+..+++.-..   .+.|+++.+||.|+....+..  ...... ++..
T Consensus        82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~l---eg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~  157 (197)
T KOG0076|consen   82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKL---EGAPVLVLANKQDLQNAMEAAELDGVFGL-AELI  157 (197)
T ss_pred             HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHh---cCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhc
Confidence            333343 35778999999999775444433  33333333333   368899999999997653321  111111 1221


Q ss_pred             --CCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          288 --GYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       288 --~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                        ...++.+|||.+|+||++-..|++..+.++
T Consensus       158 ~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  158 PRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             CCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence              223689999999999999999999999887

>cd01859 MJ1464 MJ1464

Probab=99.53  E-value=1e-13  Score=113.70  Aligned_cols=125  Identities=27%  Similarity=0.382  Sum_probs=87.0

Q ss_pred             CCceEEEccccCCCCCC-C------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhhHHH
Q 020714           45 DCDSVFDSSYFRIPTID-D------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEE  104 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~~-~------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~  104 (322)
                      .+|+++.+.|++.|... +                  ||+|+.+.+....|..+....+..+++.++ ++.|..++.   
T Consensus        12 ~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~---   88 (156)
T cd01859          12 ESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILR---   88 (156)
T ss_pred             hCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHH---
Confidence            47888888887776543 2                  899987665556676555555566788888 888877662   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee
Q 020714          105 EEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK  184 (322)
Q Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~  184 (322)
                                 ..+...+           +......+++++|.+|||||||+|++.+.....+++.+|+|......   .
T Consensus        89 -----------~~l~~~~-----------~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~---~  143 (156)
T cd01859          89 -----------RTIKELA-----------KIDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLV---K  143 (156)
T ss_pred             -----------HHHHHHH-----------hhcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEE---E
Confidence                       1111111           11234577899999999999999999987777778888877654422   2


Q ss_pred             CCccEEEEeCCCc
Q 020714          185 ADTQICIFDTPGL  197 (322)
Q Consensus       185 ~~~~~~l~DtpG~  197 (322)
                      .+..+.+|||||+
T Consensus       144 ~~~~~~~~DtpGi  156 (156)
T cd01859         144 ITSKIYLLDTPGV  156 (156)
T ss_pred             cCCCEEEEECcCC
Confidence            2447899999996

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.4e-13  Score=128.19  Aligned_cols=165  Identities=21%  Similarity=0.307  Sum_probs=113.5

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeE-EEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV-LGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ..++++.|-++|.-.-|||||+.+|.+..++.. ...|.|.+.- ..+-...|..++|+||||..-|      ..+++  
T Consensus       149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF------~aMRa--  219 (683)
T KOG1145|consen  149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-EAGGITQHIGAFTVTLPSGKSITFLDTPGHAAF------SAMRA--  219 (683)
T ss_pred             cCCCCCeEEEeecccCChhhHHHHHhhCceehh-hcCCccceeceEEEecCCCCEEEEecCCcHHHH------HHHHh--
Confidence            456889999999999999999999988776543 3334443311 1112236889999999997532      11111  


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH-------HhcC
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-------FKHL  286 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~-------~~~~  286 (322)
                          .-...+|.+++|+.+.++...+.      ++.+......++|+|+.+||||.+..  ..+...+.       +.++
T Consensus       220 ----RGA~vtDIvVLVVAadDGVmpQT------~EaIkhAk~A~VpiVvAinKiDkp~a--~pekv~~eL~~~gi~~E~~  287 (683)
T KOG1145|consen  220 ----RGANVTDIVVLVVAADDGVMPQT------LEAIKHAKSANVPIVVAINKIDKPGA--NPEKVKRELLSQGIVVEDL  287 (683)
T ss_pred             ----ccCccccEEEEEEEccCCccHhH------HHHHHHHHhcCCCEEEEEeccCCCCC--CHHHHHHHHHHcCccHHHc
Confidence                23466799999999977654433      33333333446889999999997653  33333333       3455


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLK  320 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~  320 (322)
                      .|..+++++||++|+|++.|-+++.-...-..++
T Consensus       288 GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLk  321 (683)
T KOG1145|consen  288 GGDVQVIPISALTGENLDLLEEAILLLAEVMDLK  321 (683)
T ss_pred             CCceeEEEeecccCCChHHHHHHHHHHHHHhhcc
Confidence            6677899999999999999999998776655443

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.53  E-value=4.5e-14  Score=123.35  Aligned_cols=160  Identities=21%  Similarity=0.291  Sum_probs=101.7

Q ss_pred             hhhhccCceEEEEEcCCCCchhHHHHHHhC------Ceeee--ecCCCCceeeeEEE-----------------------
Q 020714          132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAA--VSRKTNTTTHEVLG-----------------------  180 (322)
Q Consensus       132 ~~~~~~~~~~v~v~G~~~vGKStlin~l~~------~~~~~--~~~~~~~t~~~~~~-----------------------  180 (322)
                      ..+...+...|+|.|.||+|||||+..|..      .+++.  +.+....|.....+                       
T Consensus        44 l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG  123 (323)
T COG1703          44 LYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRG  123 (323)
T ss_pred             HhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCc
Confidence            346677888999999999999999998752      23332  22222222111110                       


Q ss_pred             --------------EEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHH
Q 020714          181 --------------VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL  246 (322)
Q Consensus       181 --------------~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~  246 (322)
                                    .+.-.|+++.|+.|.|..+...               .....+|.+++|.=...  ...-+.++.-
T Consensus       124 ~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---------------~I~~~aDt~~~v~~pg~--GD~~Q~iK~G  186 (323)
T COG1703         124 TLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---------------DIANMADTFLVVMIPGA--GDDLQGIKAG  186 (323)
T ss_pred             cchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---------------HHhhhcceEEEEecCCC--CcHHHHHHhh
Confidence                          0122467899999999874311               22355688888875532  3333445555


Q ss_pred             HHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH-------HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          247 IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-------FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       247 l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~-------~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +.++.        .|+|+||.|..............       .....+.++++.+||.+|+|+++|++.|.++..-
T Consensus       187 imEia--------Di~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         187 IMEIA--------DIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             hhhhh--------heeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence            55555        79999999965543222221111       2233466789999999999999999999988654

>PRK12739 elongation factor G; Reviewed

Probab=99.52  E-value=1.8e-13  Score=137.20  Aligned_cols=117  Identities=21%  Similarity=0.286  Sum_probs=83.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC-----eeeeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      +..+|+++|.+|+|||||+|+|+..     ....+.            ...|.|.+.....+...+..+.++||||+..+
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f   86 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF   86 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence            4568999999999999999999642     111111            24467777666667778889999999998642


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                                  ...+...+..+|++++|+|+..+...++..+...+...      +.|.|+++||+|+...
T Consensus        87 ------------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~------~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         87 ------------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY------GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             ------------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEEEECCCCCCC
Confidence                        12344566778999999999877655554444444432      3579999999999853

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.52  E-value=2.5e-13  Score=131.38  Aligned_cols=117  Identities=19%  Similarity=0.291  Sum_probs=74.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC--Cee---eeecC----------------CCCceeeeEEEEEeeCCccEEEEeCCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG--TKV---AAVSR----------------KTNTTTHEVLGVMTKADTQICIFDTPG  196 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~--~~~---~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~DtpG  196 (322)
                      +..+|+++|.+|+|||||+++|+.  +..   ..+..                .-|.+.......+...+..+.+|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            456899999999999999999863  111   11110                012222233333556678899999999


Q ss_pred             cccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      +..+.            ..++..+..+|++|+|+|+..+...+..   .++......   +.|+++++||+|+...
T Consensus        89 ~~df~------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~---~l~~~~~~~---~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         89 HEDFS------------EDTYRTLTAVDSALMVIDAAKGVEPQTR---KLMEVCRLR---DTPIFTFINKLDRDGR  146 (526)
T ss_pred             chhhH------------HHHHHHHHHCCEEEEEEecCCCCCHHHH---HHHHHHHhc---CCCEEEEEECCccccc
Confidence            86432            1233456778999999999776433222   233332222   5679999999998753

>PRK00098 GTPase RsgA; Reviewed

Probab=99.51  E-value=1.8e-13  Score=123.88  Aligned_cols=164  Identities=17%  Similarity=0.144  Sum_probs=107.6

Q ss_pred             CCCceEEEccccCCCCCC-C--------------------CCCCCC-CCCChhhHHHHHHhhCCeEEEeec-cccchhhh
Q 020714           44 NDCDSVFDSSYFRIPTID-D--------------------PQNNNA-AKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRI  100 (322)
Q Consensus        44 ~~~d~v~~~~da~~p~~~-~--------------------~k~dl~-~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~  100 (322)
                      ..+|+++-+.|+.-|.++ +                    ||+||. .++....|..++...+..+++.++ ++.+...+
T Consensus        79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L  158 (298)
T PRK00098         79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDEL  158 (298)
T ss_pred             ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHH
Confidence            478888888887666543 2                    799997 444556788888888888888888 77776665


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCC-------Cc
Q 020714          101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-------NT  173 (322)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~-------~~  173 (322)
                      .              ..+                   .+..++++|.+|||||||+|+|.+.....++..+       +|
T Consensus       159 ~--------------~~l-------------------~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~ht  205 (298)
T PRK00098        159 K--------------PLL-------------------AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHT  205 (298)
T ss_pred             H--------------hhc-------------------cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcc
Confidence            1              111                   1335899999999999999999987554433333       25


Q ss_pred             eeeeEEEEEeeCCccEEEEeCCCcccCCC-CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHH
Q 020714          174 TTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (322)
Q Consensus       174 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~  248 (322)
                      |+......+.   ....++||||+..+.. ....+.....|.........|.     |.-+.|..++.+.+...++
T Consensus       206 T~~~~~~~~~---~~~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~~~~c~-----f~~c~h~~ep~c~v~~a~~  273 (298)
T PRK00098        206 TTHVELYDLP---GGGLLIDTPGFSSFGLHDLEAEELEHYFPEFRPLSGDCK-----FRNCTHLHEPGCAVKAAVE  273 (298)
T ss_pred             cccEEEEEcC---CCcEEEECCCcCccCCCCCCHHHHHHHHHHHHHHhCCCC-----CCCCcCCCCCCChHHHHHH
Confidence            5444432222   2349999999986543 2344556666666555555544     4444566777777666555

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.50  E-value=5.8e-13  Score=114.80  Aligned_cols=174  Identities=17%  Similarity=0.261  Sum_probs=109.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ++|+++|.+|+||||++|.+++......+ ...+.|...........+..+.++||||+.....  ........+.+.+.
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~--~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG--SDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE--EHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc--cHHHHHHHHHHHHH
Confidence            47999999999999999999998876554 2344555555555567899999999999965432  23333333444333


Q ss_pred             -hcccccEEEEEEeCCCCCCCcHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCCChhHHHH--------HHHHHhcCCC
Q 020714          219 -AVNLFEVLMVVFDVHRHLTSPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTKKKDLLK--------VAEQFKHLPG  288 (322)
Q Consensus       219 -~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~--------~~~~~~~~~~  288 (322)
                       .....+++|+|+... +.+..+.....++.. ++....  .-+++|+|..|...... .++        ....+.+..+
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~-~~~~l~~~~~~~l~~li~~c~  154 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDS-LEDYLKKESNEALQELIEKCG  154 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHH--hHhhHHhhhcccccccc-HHHHHhccCchhHhHHhhhcC
Confidence             346789999999997 667767666665554 443222  34899999998776533 111        1122222223


Q ss_pred             CCcEEEeecC------CCCCHHHHHHHHHHHhhhcCCc
Q 020714          289 YERIFMTSGL------KGAGLKALTQYLMEQFKDLGLK  320 (322)
Q Consensus       289 ~~~~~~iSa~------~g~gi~el~~~i~~~l~~~~~~  320 (322)
                      . .++.++.+      ....+.+|++.|.+.+.+++-.
T Consensus       155 ~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~  191 (212)
T PF04548_consen  155 G-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQ  191 (212)
T ss_dssp             T-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             C-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence            2 46766665      4468999999999999887643

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.49  E-value=1.1e-13  Score=123.62  Aligned_cols=149  Identities=16%  Similarity=0.254  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeee-----eecC------------CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVA-----AVSR------------KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG  203 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~-----~~~~------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~  203 (322)
                      +|+++|.+|+|||||+|+|+...-.     .+..            ..+.+.......+...+..+.+|||||...+   
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f---   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF---   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence            4899999999999999998743211     1110            0122223333345556788999999998532   


Q ss_pred             CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH
Q 020714          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF  283 (322)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~  283 (322)
                               ...+...+..+|++++|+|++.+.......+..++..   .   +.|.++|+||+|+....  .......+
T Consensus        78 ---------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~---~---~~p~iivvNK~D~~~~~--~~~~~~~l  140 (268)
T cd04170          78 ---------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE---A---GIPRIIFINKMDRERAD--FDKTLAAL  140 (268)
T ss_pred             ---------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH---c---CCCEEEEEECCccCCCC--HHHHHHHH
Confidence                     1233345677899999999977544433333333332   2   46799999999987642  23333344


Q ss_pred             hcCCCCCcEE--EeecCCCCCHHHHHHHH
Q 020714          284 KHLPGYERIF--MTSGLKGAGLKALTQYL  310 (322)
Q Consensus       284 ~~~~~~~~~~--~iSa~~g~gi~el~~~i  310 (322)
                      ....+. +++  .+...+|.|+..+.+.+
T Consensus       141 ~~~~~~-~~~~~~ip~~~~~~~~~~vd~~  168 (268)
T cd04170         141 QEAFGR-PVVPLQLPIGEGDDFKGVVDLL  168 (268)
T ss_pred             HHHhCC-CeEEEEecccCCCceeEEEEcc
Confidence            333333 233  34456666655444444

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.49  E-value=3.6e-13  Score=127.92  Aligned_cols=163  Identities=17%  Similarity=0.266  Sum_probs=100.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeee--ecCCCCceeeeEE---------------------------EEEe----
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVL---------------------------GVMT----  183 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~--~~~~~~~t~~~~~---------------------------~~~~----  183 (322)
                      ...++|+++|.-..|||||+.+|++.....  .....|.|.+.-.                           ..+.    
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            457899999999999999999999743211  0011111100000                           0000    


Q ss_pred             --eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcE
Q 020714          184 --KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKR  260 (322)
Q Consensus       184 --~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~  260 (322)
                        .....+.|+||||...            ....++..+..+|++++|+|+..+. ..+.......+..++.     .++
T Consensus       112 ~~~~~~~i~~IDtPGH~~------------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi-----~~i  174 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDI------------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKL-----KHI  174 (460)
T ss_pred             cccccceEeeeeCCCHHH------------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCC-----CcE
Confidence              0023689999999642            3455566678889999999997642 2222233333333332     358


Q ss_pred             EEEEeCCCCCCChhH---HHHHHHHHhc-CCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          261 VLCMNKVDLVTKKKD---LLKVAEQFKH-LPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       261 ivV~NK~Dl~~~~~~---~~~~~~~~~~-~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      |+|+||+|+.+....   ..+....+.. .....+++++||++|.|+++|++.|.+.+..
T Consensus       175 IVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        175 IILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             EEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            999999999753221   1122222211 1123479999999999999999999976653

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.49  E-value=1.7e-13  Score=117.82  Aligned_cols=126  Identities=19%  Similarity=0.227  Sum_probs=83.8

Q ss_pred             ccEEEEeCCCccc-CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          187 TQICIFDTPGLML-NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       187 ~~~~l~DtpG~~~-~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      ....++||||+++ |.+..+...+.+.+...+.     -+++||+|..+. +.+...+..++-..........|+|+|.|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~p-----tvv~YvvDt~rs-~~p~tFMSNMlYAcSilyktklp~ivvfN  189 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFP-----TVVVYVVDTPRS-TSPTTFMSNMLYACSILYKTKLPFIVVFN  189 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCC-----eEEEEEecCCcC-CCchhHHHHHHHHHHHHHhccCCeEEEEe
Confidence            4579999999964 4455555666666665544     678999998542 33333444455444444445678999999


Q ss_pred             CCCCCCChh------HHHHHHHHHh-------------------cCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          266 KVDLVTKKK------DLLKVAEQFK-------------------HLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       266 K~Dl~~~~~------~~~~~~~~~~-------------------~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      |+|+.+...      +.+.++..+.                   ..+.....+.+|+.+|.|.+++|..+.+.+.+..
T Consensus       190 K~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~  267 (366)
T KOG1532|consen  190 KTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE  267 (366)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence            999988742      2222222222                   1122235899999999999999999998877643

>cd04169 RF3 RF3 subfamily

Probab=99.49  E-value=5.2e-13  Score=118.89  Aligned_cols=115  Identities=18%  Similarity=0.276  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCe--e---eeecC----------------CCCceeeeEEEEEeeCCccEEEEeCCCcc
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTK--V---AAVSR----------------KTNTTTHEVLGVMTKADTQICIFDTPGLM  198 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~--~---~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~  198 (322)
                      -+|+++|.+|+|||||+++|+...  .   ..+..                .-+.+.......+...+..+.+|||||..
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            369999999999999999987421  1   11110                01222223333455678899999999986


Q ss_pred             cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      .+.            ..++..+..+|++++|+|++.+.......+   ++.....   +.|+++++||+|+...
T Consensus        83 df~------------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i---~~~~~~~---~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFS------------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKL---FEVCRLR---GIPIITFINKLDREGR  138 (267)
T ss_pred             HHH------------HHHHHHHHHCCEEEEEEECCCCccHHHHHH---HHHHHhc---CCCEEEEEECCccCCC
Confidence            431            123445677899999999976543322222   2222222   4679999999998764

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01882 BMS1 Bms1

Probab=99.48  E-value=1.6e-12  Score=113.03  Aligned_cols=140  Identities=16%  Similarity=0.334  Sum_probs=89.4

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...+..|+++|.+|+|||||+|.|.+.. ........|+.     ......+..+.++||||..               .
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-----~i~~~~~~~i~~vDtPg~~---------------~   95 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-----TVVTGKKRRLTFIECPNDI---------------N   95 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-----EEEecCCceEEEEeCCchH---------------H
Confidence            4567889999999999999999998652 11122222221     1122457789999999842               2


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHHH----HHHHH-hcCCC
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLLK----VAEQF-KHLPG  288 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~~----~~~~~-~~~~~  288 (322)
                      .++..+..+|++++|+|++.+....+..+..++...+      .| +++|+||+|+.......+.    ..+.+ .....
T Consensus        96 ~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g------~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~  169 (225)
T cd01882          96 AMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHG------FPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQ  169 (225)
T ss_pred             HHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcC------CCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCC
Confidence            2334457789999999997766555544544444322      34 4569999999754332222    22222 22344


Q ss_pred             CCcEEEeecCCCC
Q 020714          289 YERIFMTSGLKGA  301 (322)
Q Consensus       289 ~~~~~~iSa~~g~  301 (322)
                      ..+++++||++.-
T Consensus       170 ~~ki~~iSa~~~~  182 (225)
T cd01882         170 GAKLFYLSGIVHG  182 (225)
T ss_pred             CCcEEEEeeccCC
Confidence            5689999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.48  E-value=8.3e-13  Score=117.99  Aligned_cols=135  Identities=24%  Similarity=0.329  Sum_probs=87.2

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ......++|+++|.+||||||++|+|++.+...++...+.+...........+..+.++||||+....  .........+
T Consensus        33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~--~~~e~~~~~i  110 (313)
T TIGR00991        33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG--YINDQAVNII  110 (313)
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH--HHHHHHHHHH
Confidence            33456889999999999999999999998876666655555444444444578899999999997531  1111111222


Q ss_pred             HHHHhhcccccEEEEEEeCCC-CCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          214 ESAWSAVNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~-~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      +..+. -...|++++|...+. +.+..+..+...+..+-.... -.++|+|+|++|..++
T Consensus       111 k~~l~-~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i-w~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       111 KRFLL-GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI-WRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HHHhh-cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh-hccEEEEEECCccCCC
Confidence            22211 236899999966532 344455555555554422211 2469999999998743

>PRK00007 elongation factor G; Reviewed

Probab=99.48  E-value=7e-13  Score=132.98  Aligned_cols=116  Identities=21%  Similarity=0.274  Sum_probs=83.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC---C--eeeeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG---T--KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~---~--~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      +..+|+++|.+|+|||||+|+|+.   .  ....+.            ...|+|.+.....+...+..+.|+||||+..+
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f   88 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF   88 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence            456899999999999999999963   1  111111            24467777666666777889999999998642


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~  271 (322)
                                  ...+...+..+|++++|+|+..+...++..+...+...+      .|.++++||+|+..
T Consensus        89 ------------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~------~p~iv~vNK~D~~~  141 (693)
T PRK00007         89 ------------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK------VPRIAFVNKMDRTG  141 (693)
T ss_pred             ------------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcC------CCEEEEEECCCCCC
Confidence                        112444566779999999998776666655555555443      56899999999874

>PRK13768 GTPase; Provisional

Probab=99.47  E-value=7.3e-13  Score=117.14  Aligned_cols=127  Identities=20%  Similarity=0.188  Sum_probs=76.6

Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK  266 (322)
                      ..+.++||||..++...   ......+.+.+.... ++++++|+|++......+.....++....... .+.|+++|+||
T Consensus        97 ~~~~~~d~~g~~~~~~~---~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK  171 (253)
T PRK13768         97 ADYVLVDTPGQMELFAF---RESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNK  171 (253)
T ss_pred             CCEEEEeCCcHHHHHhh---hHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEh
Confidence            47899999998754321   111112222222222 79999999997654444433333332111101 25789999999


Q ss_pred             CCCCCChhH--HHHHHH-------------------------HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          267 VDLVTKKKD--LLKVAE-------------------------QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       267 ~Dl~~~~~~--~~~~~~-------------------------~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      +|+....+.  ......                         .+.+.....+++++|++++.|+++|+++|.+.+..++
T Consensus       172 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~  250 (253)
T PRK13768        172 ADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGE  250 (253)
T ss_pred             HhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCC
Confidence            999865321  111111                         1122233347899999999999999999999987553

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.47  E-value=5.3e-14  Score=114.38  Aligned_cols=135  Identities=23%  Similarity=0.258  Sum_probs=81.3

Q ss_pred             hhHHHHHHhhCCeEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCch
Q 020714           74 PTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGK  152 (322)
Q Consensus        74 ~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGK  152 (322)
                      ++|...|+..++.+++.++ +..+...+              +..+                   ..-.++++|++||||
T Consensus         2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l--------------~~~l-------------------~~k~~vl~G~SGvGK   48 (161)
T PF03193_consen    2 EELLEQYEKLGYPVFFISAKTGEGIEEL--------------KELL-------------------KGKTSVLLGQSGVGK   48 (161)
T ss_dssp             HHHHHHHHHTTSEEEE-BTTTTTTHHHH--------------HHHH-------------------TTSEEEEECSTTSSH
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCcCHHHH--------------HHHh-------------------cCCEEEEECCCCCCH
Confidence            6799999999999999999 78887776              1111                   124588999999999


Q ss_pred             hHHHHHHhCCeeee---ecC----CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC-CChhhHHHHHHHHHhhccccc
Q 020714          153 SSIINYMVGTKVAA---VSR----KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFE  224 (322)
Q Consensus       153 Stlin~l~~~~~~~---~~~----~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~ad  224 (322)
                      |||||.|.+.....   ++.    .-+||+......+   .....++||||+..+... .....+...|.........|.
T Consensus        49 SSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~~~~Ck  125 (161)
T PF03193_consen   49 SSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSFGLWHIDPEELAQYFPEFRPLAGQCK  125 (161)
T ss_dssp             HHHHHHHHTSS----S--------------SEEEEEE---TTSEEEECSHHHHT--GCCS-HHHHHHCSGGGHHHTTHSS
T ss_pred             HHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec---CCCcEEEECCCCCccccccCCHHHHHHHHHHhccccCCCC
Confidence            99999999864322   222    2245555544333   234599999999877643 333333333333333334444


Q ss_pred             EEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714          225 VLMVVFDVHRHLTSPDSRVIRLIER  249 (322)
Q Consensus       225 ~ii~v~D~s~~~~~~~~~~~~~l~~  249 (322)
                           |.-+.|..++.+.+...++.
T Consensus       126 -----F~~C~H~~Ep~CaV~~av~~  145 (161)
T PF03193_consen  126 -----FRDCTHIHEPGCAVKAAVEN  145 (161)
T ss_dssp             -----STTTTSSSSTT-HHHHHHHT
T ss_pred             -----ccCCCCCCCCCChHHHHHHC
Confidence                 34456678888888777663

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.47  E-value=3.6e-12  Score=103.74  Aligned_cols=157  Identities=20%  Similarity=0.241  Sum_probs=106.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-----cC-CCC---ceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChh
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-----SR-KTN---TTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHK  207 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-----~~-~~~---~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~  207 (322)
                      ...+|+++|+-++||||++..+.......+     .. ..+   +|.....+.+... +..++|+||||+.++       
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF-------   81 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF-------   81 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH-------
Confidence            467899999999999999999987653222     11 112   3333333334444 378999999999754       


Q ss_pred             hHHHHHHHHHhh-cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714          208 DVKVRVESAWSA-VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL  286 (322)
Q Consensus       208 ~~~~~~~~~~~~-~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~  286 (322)
                            .-.|+. .+.+.++++++|.+.+.......+.+.+....     ..|+++..||.|+..... .+++.+.+...
T Consensus        82 ------~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~-----~ip~vVa~NK~DL~~a~p-pe~i~e~l~~~  149 (187)
T COG2229          82 ------KFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRN-----PIPVVVAINKQDLFDALP-PEKIREALKLE  149 (187)
T ss_pred             ------HHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhcc-----CCCEEEEeeccccCCCCC-HHHHHHHHHhc
Confidence                  333333 47789999999998876663334444443322     168999999999987532 33333444333


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      .--.++++++|.+++|..+.++.+...
T Consensus       150 ~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         150 LLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cCCCceeeeecccchhHHHHHHHHHhh
Confidence            222379999999999999999888766

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.47  E-value=1.3e-13  Score=119.11  Aligned_cols=157  Identities=19%  Similarity=0.289  Sum_probs=90.6

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHh------CCeeee--ecCCCCce---------------ee--e-EEE-------
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAA--VSRKTNTT---------------TH--E-VLG-------  180 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~------~~~~~~--~~~~~~~t---------------~~--~-~~~-------  180 (322)
                      +...+.+.|+|.|+||+|||||++.|.      +.+++.  +.+....|               .+  . ...       
T Consensus        24 ~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~l  103 (266)
T PF03308_consen   24 PHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSL  103 (266)
T ss_dssp             GGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSH
T ss_pred             hhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCC
Confidence            445578899999999999999999875      233332  22211111               00  0 000       


Q ss_pred             ------------EEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHH
Q 020714          181 ------------VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (322)
Q Consensus       181 ------------~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~  248 (322)
                                  .+...|.++.|+.|.|..+       .+        .+....+|.+++|+-...+..-+  .++.-+.
T Consensus       104 GGls~~t~~~v~ll~aaG~D~IiiETVGvGQ-------sE--------~~I~~~aD~~v~v~~Pg~GD~iQ--~~KaGim  166 (266)
T PF03308_consen  104 GGLSRATRDAVRLLDAAGFDVIIIETVGVGQ-------SE--------VDIADMADTVVLVLVPGLGDEIQ--AIKAGIM  166 (266)
T ss_dssp             HHHHHHHHHHHHHHHHTT-SEEEEEEESSST-------HH--------HHHHTTSSEEEEEEESSTCCCCC--TB-TTHH
T ss_pred             CCccHhHHHHHHHHHHcCCCEEEEeCCCCCc-------cH--------HHHHHhcCeEEEEecCCCccHHH--HHhhhhh
Confidence                        0112468899999999864       11        13456789999999875443322  2333334


Q ss_pred             HhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh-----cCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK-----HLPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       249 ~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      ++.        .++|+||+|+........+....+.     ...+.+|++.+||.+|.||++|++.|.++..
T Consensus       167 Eia--------Di~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  167 EIA--------DIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             HH---------SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhc--------cEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            433        6999999996544332222222222     1124578999999999999999999988654

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01855 YqeH YqeH

Probab=99.47  E-value=5.3e-13  Score=113.13  Aligned_cols=123  Identities=17%  Similarity=0.158  Sum_probs=80.9

Q ss_pred             CCCceEEEccccCCCCCC-----------------CCCCCCCCCCChh----hHHHHH--HhhC---CeEEEeec-cccc
Q 020714           44 NDCDSVFDSSYFRIPTID-----------------DPQNNNAAKKQEP----TWDEKY--RERT---DRIVFGEE-AQKG   96 (322)
Q Consensus        44 ~~~d~v~~~~da~~p~~~-----------------~~k~dl~~~~~~~----~w~~~~--~~~~---~~i~f~~~-~~~~   96 (322)
                      ..+|+++.+.|++.+...                 .||+|+.+++...    .|...+  ...+   ..+++.++ ++.|
T Consensus        33 ~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~g  112 (190)
T cd01855          33 PKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWG  112 (190)
T ss_pred             cCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCC
Confidence            368888888887655422                 2899997655433    344111  2222   24677888 7778


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCee--------eeec
Q 020714           97 KLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV--------AAVS  168 (322)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~--------~~~~  168 (322)
                      ...+++              .+...+              +....++++|.||||||||||+|.+...        ..++
T Consensus       113 i~eL~~--------------~l~~~l--------------~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~  164 (190)
T cd01855         113 VEELIN--------------AIKKLA--------------KKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTS  164 (190)
T ss_pred             HHHHHH--------------HHHHHh--------------hcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccC
Confidence            776621              111111              1245799999999999999999987542        3567


Q ss_pred             CCCCceeeeEEEEEeeCCccEEEEeCCCc
Q 020714          169 RKTNTTTHEVLGVMTKADTQICIFDTPGL  197 (322)
Q Consensus       169 ~~~~~t~~~~~~~~~~~~~~~~l~DtpG~  197 (322)
                      ..+|+|+......+.   ..+.++||||+
T Consensus       165 ~~~gtT~~~~~~~~~---~~~~~~DtPG~  190 (190)
T cd01855         165 PIPGTTLDLIKIPLG---NGKKLYDTPGI  190 (190)
T ss_pred             CCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence            788999887765432   25799999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=8.6e-13  Score=102.14  Aligned_cols=158  Identities=16%  Similarity=0.214  Sum_probs=110.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+.+++..+|-.++||||++-.|.-.....+.++.|....+    +.+.+..+.+||..|...             ++..
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvet----VtykN~kfNvwdvGGqd~-------------iRpl   77 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK-------------IRPL   77 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCcccccccceeEEE----EEeeeeEEeeeeccCchh-------------hhHH
Confidence            34688999999999999999999766544444444433332    336688899999999853             3333


Q ss_pred             Hh-hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH-----HhcCCCCC
Q 020714          217 WS-AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-----FKHLPGYE  290 (322)
Q Consensus       217 ~~-~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~  290 (322)
                      |. ++....++|+|+|..+. ..-++.-.++-..+......+.++++..||.|+..+.... ++.+.     +.+..+  
T Consensus        78 WrhYy~gtqglIFV~Dsa~~-dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pq-ei~d~leLe~~r~~~W--  153 (180)
T KOG0071|consen   78 WRHYYTGTQGLIFVVDSADR-DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQ-EIQDKLELERIRDRNW--  153 (180)
T ss_pred             HHhhccCCceEEEEEeccch-hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHH-HHHHHhccccccCCcc--
Confidence            43 46888999999999764 3333333344455555666678899999999998764321 21222     223333  


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .+.++||.+|+|+.|-+.||...+.
T Consensus       154 ~vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  154 YVQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             EeeccccccchhHHHHHHHHHhhcc
Confidence            3789999999999999999988765

>cd01850 CDC_Septin CDC/Septin

Probab=99.46  E-value=2.3e-12  Score=115.35  Aligned_cols=128  Identities=18%  Similarity=0.275  Sum_probs=75.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecC--------CCCce-eeeEEEEEeeCC--ccEEEEeCCCcccCCCCCC-
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR--------KTNTT-THEVLGVMTKAD--TQICIFDTPGLMLNKSGYS-  205 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~--------~~~~t-~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~-  205 (322)
                      -.++|+++|.+|+|||||+|+|++..+.....        ...++ .......+...+  ..+.+|||||+........ 
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            35899999999999999999999877654322        12222 122222233334  4689999999976532110 


Q ss_pred             hhhHH----HHHHHHHh---------hc--ccccEEEEEEeCCCC-CCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q 020714          206 HKDVK----VRVESAWS---------AV--NLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL  269 (322)
Q Consensus       206 ~~~~~----~~~~~~~~---------~~--~~ad~ii~v~D~s~~-~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl  269 (322)
                      ...+.    ..+...+.         .+  ..+|+++++++.+.+ ....+..+   ++.+..    .+|+++|+||+|+
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~---lk~l~~----~v~vi~VinK~D~  155 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEF---MKRLSK----RVNIIPVIAKADT  155 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHH---HHHHhc----cCCEEEEEECCCc
Confidence            11111    11222111         11  357889999988643 22333333   333332    3679999999999


Q ss_pred             CCC
Q 020714          270 VTK  272 (322)
Q Consensus       270 ~~~  272 (322)
                      ...
T Consensus       156 l~~  158 (276)
T cd01850         156 LTP  158 (276)
T ss_pred             CCH
Confidence            763

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK13351 elongation factor G; Reviewed

Probab=99.45  E-value=8.4e-13  Score=132.68  Aligned_cols=117  Identities=20%  Similarity=0.293  Sum_probs=76.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe--e---eeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK--V---AAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~--~---~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      ...+|+++|..|+|||||+++|+...  .   ..+.            ...+.|.......+...+..+.+|||||+..+
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df   86 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF   86 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence            35689999999999999999997421  0   0000            01233333333345566789999999998643


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      .            ..+...+..+|++++|+|++.+...........+.   ..   +.|+++|+||+|+...
T Consensus        87 ~------------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~---~~---~~p~iiviNK~D~~~~  140 (687)
T PRK13351         87 T------------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQAD---RY---GIPRLIFINKMDRVGA  140 (687)
T ss_pred             H------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH---hc---CCCEEEEEECCCCCCC
Confidence            1            12334567789999999997765444333333322   22   4679999999998864

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.45  E-value=1.2e-12  Score=124.46  Aligned_cols=152  Identities=17%  Similarity=0.250  Sum_probs=95.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe--ee----------------------------eecCCCCceeeeEEEEEeeCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VA----------------------------AVSRKTNTTTHEVLGVMTKAD  186 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~--~~----------------------------~~~~~~~~t~~~~~~~~~~~~  186 (322)
                      +..++|+++|..++|||||+.+|+...  ..                            .....-|.|.+.....+...+
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            456889999999999999999886310  00                            011123556555555555667


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCC-------CcHHHHHHHHHHhcccCCCCCc
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK  259 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~-------~~~~~~~~~l~~~~~~~~~~~p  259 (322)
                      ..+.++||||...|            +..+...+..+|++++|+|+..+.-       .+......+...++.     .+
T Consensus        85 ~~i~liDtPGh~df------------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi-----~~  147 (447)
T PLN00043         85 YYCTVIDAPGHRDF------------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV-----KQ  147 (447)
T ss_pred             EEEEEEECCCHHHH------------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCC-----Cc
Confidence            78999999998643            3445556788999999999976421       111122222333332     24


Q ss_pred             EEEEEeCCCCCCC---hhHH---HHHHHHHhcCCCC----CcEEEeecCCCCCHHH
Q 020714          260 RVLCMNKVDLVTK---KKDL---LKVAEQFKHLPGY----ERIFMTSGLKGAGLKA  305 (322)
Q Consensus       260 ~ivV~NK~Dl~~~---~~~~---~~~~~~~~~~~~~----~~~~~iSa~~g~gi~e  305 (322)
                      +|+++||+|+...   ....   .+....+.+..++    .+++++||++|+|+.+
T Consensus       148 iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        148 MICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             EEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            7899999998621   1112   2223333333332    3699999999999853

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.45  E-value=1.5e-12  Score=130.77  Aligned_cols=144  Identities=15%  Similarity=0.189  Sum_probs=93.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe--e---eeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK--V---AAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~--~---~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      +..+|+++|.+|+|||||+|+|+...  .   ..+.            ...|+|.+.....+...+..+.+|||||+..+
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            35689999999999999999996321  1   1111            12466666666667778889999999999753


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh--hHHHH
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLK  278 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~--~~~~~  278 (322)
                      ..            .+...+..+|++++|+|+..+...+...+..++...      +.|+++|+||+|+....  ....+
T Consensus        89 ~~------------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~------~~p~ivviNK~D~~~~~~~~~~~~  150 (689)
T TIGR00484        89 TV------------EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY------EVPRIAFVNKMDKTGANFLRVVNQ  150 (689)
T ss_pred             hH------------HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHH
Confidence            21            223445677999999999876555544444443332      36799999999998643  11222


Q ss_pred             HHHHHhcCCCCCcEEEeecCCC
Q 020714          279 VAEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       279 ~~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      ....+ .......++++|+..+
T Consensus       151 i~~~l-~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       151 IKQRL-GANAVPIQLPIGAEDN  171 (689)
T ss_pred             HHHHh-CCCceeEEeccccCCC
Confidence            22222 2223334677887666

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.43  E-value=3.4e-14  Score=114.28  Aligned_cols=165  Identities=17%  Similarity=0.186  Sum_probs=111.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ...++++++|..+|||||+|.+++.+-+..- ....|+..-.....+......+.+|||+|+.++..          +  
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDa----------I--   85 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDA----------I--   85 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHH----------H--
Confidence            4578999999999999999999986543321 12222221111111223456778999999986421          1  


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      +-.++++|...++||..+++.++  +.+..|-+.+... ...+|.++|-||+|+.+.......+.+.+++.... .++.+
T Consensus        86 tkAyyrgaqa~vLVFSTTDr~SF--ea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~-RlyRt  161 (246)
T KOG4252|consen   86 TKAYYRGAQASVLVFSTTDRYSF--EATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHK-RLYRT  161 (246)
T ss_pred             HHHHhccccceEEEEecccHHHH--HHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhh-hhhhh
Confidence            22457889999999999776554  4466666666543 23688999999999997644333333344333333 47999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      |++...|+...|.+|++.+...
T Consensus       162 Svked~NV~~vF~YLaeK~~q~  183 (246)
T KOG4252|consen  162 SVKEDFNVMHVFAYLAEKLTQQ  183 (246)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHH
Confidence            9999999999999999887653

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.42  E-value=8.1e-12  Score=114.51  Aligned_cols=88  Identities=23%  Similarity=0.319  Sum_probs=69.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-----------------ccEEEEeCCCcccCCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNKS  202 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~  202 (322)
                      ++|+++|.||||||||+|+|++.. ..+++.|++|.+...+.....+                 ..+.++|+||+.....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~   81 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   81 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence            689999999999999999999988 6788889999888777654433                 2489999999985322


Q ss_pred             CCChhhHHHHHHHHHhhcccccEEEEEEeCC
Q 020714          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (322)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s  233 (322)
                           .......+.+..++.||++++|+|+.
T Consensus        82 -----~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         82 -----KGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             -----hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                 11223456777889999999999985

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=3.3e-12  Score=116.18  Aligned_cols=153  Identities=21%  Similarity=0.312  Sum_probs=103.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC---------------------C---eeee------ecCCCCceeeeEEEEEeeCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG---------------------T---KVAA------VSRKTNTTTHEVLGVMTKAD  186 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~---------------------~---~~~~------~~~~~~~t~~~~~~~~~~~~  186 (322)
                      +..++++|+|...+|||||+-+|+-                     +   .++.      ....-|.|.+.....+..+.
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            4568899999999999999998862                     0   0111      11223677776666666677


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC-------CCCcHHHHHHHHHHhcccCCCCCc
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQK  259 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~-------~~~~~~~~~~~l~~~~~~~~~~~p  259 (322)
                      ..++++|+||...            .+..+..-...||+.++|+|++.+       ...+.....-+...++..     .
T Consensus        85 ~~~tIiDaPGHrd------------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~-----~  147 (428)
T COG5256          85 YNFTIIDAPGHRD------------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIK-----Q  147 (428)
T ss_pred             ceEEEeeCCchHH------------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCc-----e
Confidence            7899999999654            366677778889999999999876       223333333444444532     3


Q ss_pred             EEEEEeCCCCCCChh-HHHHHH---HHHhcCCCC----CcEEEeecCCCCCHHHH
Q 020714          260 RVLCMNKVDLVTKKK-DLLKVA---EQFKHLPGY----ERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       260 ~ivV~NK~Dl~~~~~-~~~~~~---~~~~~~~~~----~~~~~iSa~~g~gi~el  306 (322)
                      +|+++||+|+..-.+ ..++..   ..+.+..|+    .++++||+.+|+|+.+.
T Consensus       148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            899999999986432 222222   223333333    36999999999998754

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=6.7e-13  Score=103.19  Aligned_cols=158  Identities=18%  Similarity=0.250  Sum_probs=108.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +..++.++|..|+||+|++-++.-.++....+.+|......    ...+-++.+||..|...             ++..|
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v----~yKNLk~~vwdLggqtS-------------irPyW   79 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETV----PYKNLKFQVWDLGGQTS-------------IRPYW   79 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccc----ccccccceeeEccCccc-------------ccHHH
Confidence            56789999999999999999987777666666665544333    24678899999998753             22233


Q ss_pred             h-hcccccEEEEEEeCCCCCCCcHH--HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH---HHHH-HHHHhcCCCCC
Q 020714          218 S-AVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKV-AEQFKHLPGYE  290 (322)
Q Consensus       218 ~-~~~~ad~ii~v~D~s~~~~~~~~--~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~-~~~~~~~~~~~  290 (322)
                      . ++.+.|.+|||+|.++...-...  .+..++.+-..+   +..+++++||.|.....-.   .... ...+.+.  .-
T Consensus        80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq---~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r--~~  154 (182)
T KOG0072|consen   80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQ---HAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR--IW  154 (182)
T ss_pred             HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhc---CceEEEEeccccchhhhhHHHHHHHhChHHHhhh--ee
Confidence            3 46788999999999875433322  344455444443   3558999999998764221   1111 1222221  23


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      .+|.+||.+|+|+++.++|+.+-+..+
T Consensus       155 ~Iv~tSA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  155 QIVKTSAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             EEEeeccccccCCcHHHHHHHHHHhcc
Confidence            689999999999999999999988754

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.41  E-value=6.9e-12  Score=98.57  Aligned_cols=167  Identities=14%  Similarity=0.187  Sum_probs=112.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      ..+..+|+++|.-+||||++|..|+-.+.........|..+.....+..+   ...+.|.||.|+.....    +     
T Consensus         6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~----e-----   76 (198)
T KOG3883|consen    6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ----E-----   76 (198)
T ss_pred             hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh----h-----
Confidence            45678999999999999999999875443322222333344444333222   34688999999875321    1     


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCc
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER  291 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  291 (322)
                      +.+  .++..+|++++|++..+..+++.- .+..++...+  ....+|+++++||+|+..+.....+....+++.-.. .
T Consensus        77 Lpr--hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~K--dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkv-k  151 (198)
T KOG3883|consen   77 LPR--HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHK--DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKV-K  151 (198)
T ss_pred             hhH--hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcc--ccccccEEEEechhhcccchhcCHHHHHHHHhhhhe-e
Confidence            111  345677999999999775544332 2333444422  334589999999999987766555566666655443 5


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      .++++|.....+-|-|..+...+..
T Consensus       152 l~eVta~dR~sL~epf~~l~~rl~~  176 (198)
T KOG3883|consen  152 LWEVTAMDRPSLYEPFTYLASRLHQ  176 (198)
T ss_pred             EEEEEeccchhhhhHHHHHHHhccC
Confidence            8999999999999999998877644

>TIGR00101 ureG urease accessory protein UreG

Probab=99.39  E-value=1.1e-11  Score=105.70  Aligned_cols=83  Identities=19%  Similarity=0.238  Sum_probs=55.0

Q ss_pred             ccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC-hhHHHHHHHHHhcCCCCCcEEEeecCCCC
Q 020714          223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-KKDLLKVAEQFKHLPGYERIFMTSGLKGA  301 (322)
Q Consensus       223 ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~iSa~~g~  301 (322)
                      +|.++.|+|+.+.....    ......+..      -.++|+||+|+.+. ....+...+......+..+++++||++|+
T Consensus       113 ~~~~i~vvD~~~~~~~~----~~~~~qi~~------ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~  182 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIP----RKGGPGITR------SDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKE  182 (199)
T ss_pred             hCcEEEEEEcchhhhhh----hhhHhHhhh------ccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            47899999995432211    111122221      25999999999853 12333334444444566789999999999


Q ss_pred             CHHHHHHHHHHHhh
Q 020714          302 GLKALTQYLMEQFK  315 (322)
Q Consensus       302 gi~el~~~i~~~l~  315 (322)
                      |+++++++|.+.+.
T Consensus       183 gi~el~~~i~~~~~  196 (199)
T TIGR00101       183 GLDTVIDWIEHYAL  196 (199)
T ss_pred             CHHHHHHHHHhhcC
Confidence            99999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.38  E-value=3.5e-12  Score=123.50  Aligned_cols=117  Identities=20%  Similarity=0.281  Sum_probs=75.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC--Cee---eeecC----------------CCCceeeeEEEEEeeCCccEEEEeCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG--TKV---AAVSR----------------KTNTTTHEVLGVMTKADTQICIFDTP  195 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~--~~~---~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~Dtp  195 (322)
                      .+..+|+++|.+|+|||||+++|+.  +..   ..+..                .-|.+.......+...+..+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4567899999999999999999852  211   11110                11233333333455678889999999


Q ss_pred             CcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (322)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~  271 (322)
                      |+..+            ...++..+..+|++|+|+|+..+.......+.   +.....   +.|+++++||+|+..
T Consensus        89 G~~df------------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~---~~~~~~---~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDF------------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLM---EVTRLR---DTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhH------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHH---HHHHhc---CCCEEEEEECccccC
Confidence            98533            12344556788999999999765433322332   222222   468999999999865

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.38  E-value=2.4e-12  Score=118.31  Aligned_cols=157  Identities=16%  Similarity=0.254  Sum_probs=103.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCe--------------eeeecCCCCceeeeEEEEEee-----CCccEEEEeCCCcccCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTK--------------VAAVSRKTNTTTHEVLGVMTK-----ADTQICIFDTPGLMLNK  201 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~--------------~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~DtpG~~~~~  201 (322)
                      +..++-.-.-|||||..+|+...              .-.....-|.|...+...+..     ....+.|+||||+..|.
T Consensus        11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs   90 (603)
T COG0481          11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   90 (603)
T ss_pred             ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence            46677777899999999987421              011223345665544443322     23567899999999875


Q ss_pred             CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHH
Q 020714          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE  281 (322)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~  281 (322)
                      -..+            ..+..|.+.++|+|++.+...  +.+......+..    +.-+|-|+||+||+..+  .+....
T Consensus        91 YEVS------------RSLAACEGalLvVDAsQGveA--QTlAN~YlAle~----~LeIiPViNKIDLP~Ad--pervk~  150 (603)
T COG0481          91 YEVS------------RSLAACEGALLVVDASQGVEA--QTLANVYLALEN----NLEIIPVLNKIDLPAAD--PERVKQ  150 (603)
T ss_pred             EEeh------------hhHhhCCCcEEEEECccchHH--HHHHHHHHHHHc----CcEEEEeeecccCCCCC--HHHHHH
Confidence            4222            234567999999999875433  334443333332    34499999999998743  334444


Q ss_pred             HHhcCCCCC--cEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          282 QFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       282 ~~~~~~~~~--~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++.+..|..  ..+.+|||+|.||+++++.|++.+..-
T Consensus       151 eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P  188 (603)
T COG0481         151 EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP  188 (603)
T ss_pred             HHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence            444444443  579999999999999999999988653

>PRK12740 elongation factor G; Reviewed

Probab=99.37  E-value=6.6e-12  Score=125.99  Aligned_cols=110  Identities=20%  Similarity=0.235  Sum_probs=71.1

Q ss_pred             EcCCCCchhHHHHHHhCCeee-----ee------------cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChh
Q 020714          145 IGAPNAGKSSIINYMVGTKVA-----AV------------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHK  207 (322)
Q Consensus       145 ~G~~~vGKStlin~l~~~~~~-----~~------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~  207 (322)
                      +|.+|+|||||+++|+...-.     .+            ....|.|.......+...+..+.+|||||...+       
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~-------   73 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF-------   73 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence            589999999999999532110     00            112344444444456667889999999998632       


Q ss_pred             hHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          208 DVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       208 ~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                           ...+...+..+|++++|+|++.+.......+...+..   .   +.|+++|+||+|+...
T Consensus        74 -----~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~---~---~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         74 -----TGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK---Y---GVPRIIFVNKMDRAGA  127 (668)
T ss_pred             -----HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH---c---CCCEEEEEECCCCCCC
Confidence                 1223344567899999999977654433333332222   2   4679999999998754

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.36  E-value=2.7e-11  Score=111.14  Aligned_cols=166  Identities=19%  Similarity=0.286  Sum_probs=89.8

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCee-----eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK  210 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~  210 (322)
                      ...+++|+|+|.+|+|||||||+|.|-.-     +.++. ..||..... +....-..+.+||.||+....  .+..   
T Consensus        32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~-Y~~p~~pnv~lWDlPG~gt~~--f~~~---  104 (376)
T PF05049_consen   32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTP-YPHPKFPNVTLWDLPGIGTPN--FPPE---  104 (376)
T ss_dssp             HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EE-EE-SS-TTEEEEEE--GGGSS----HH---
T ss_pred             hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCee-CCCCCCCCCeEEeCCCCCCCC--CCHH---
Confidence            35678999999999999999999987321     11111 234443333 223445689999999997542  2222   


Q ss_pred             HHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC-C----------Chh-HHHH
Q 020714          211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV-T----------KKK-DLLK  278 (322)
Q Consensus       211 ~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~-~----------~~~-~~~~  278 (322)
                      ..+..  ..+...|++|++.+.  +++..+..+...+..++      +|+.+|-||+|.. .          .++ ..++
T Consensus       105 ~Yl~~--~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~g------K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~  174 (376)
T PF05049_consen  105 EYLKE--VKFYRYDFFIIISSE--RFTENDVQLAKEIQRMG------KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQE  174 (376)
T ss_dssp             HHHHH--TTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-------EEEEEE--HHHHHHHHHCC-STT--HHTHHHH
T ss_pred             HHHHH--ccccccCEEEEEeCC--CCchhhHHHHHHHHHcC------CcEEEEEecccccHhhhhccCCcccCHHHHHHH
Confidence            22221  246777988887764  44555545555666655      4599999999961 0          111 1122


Q ss_pred             ----HHHHHhcCC-CCCcEEEeecCCC--CCHHHHHHHHHHHhhhcC
Q 020714          279 ----VAEQFKHLP-GYERIFMTSGLKG--AGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       279 ----~~~~~~~~~-~~~~~~~iSa~~g--~gi~el~~~i~~~l~~~~  318 (322)
                          ....+.+.. ..+++|-+|+..-  .++..|.+.|.+.+..++
T Consensus       175 IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  175 IRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             HHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             HHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence                223333322 3357899999854  468889999998887653

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.35  E-value=1.1e-10  Score=105.92  Aligned_cols=157  Identities=20%  Similarity=0.221  Sum_probs=90.0

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCcee-------e----------eEEE--E-------
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTT-------H----------EVLG--V-------  181 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t~-------~----------~~~~--~-------  181 (322)
                      ........|+|+|++|+|||||++.+..      ..+..+...+....       +          ....  .       
T Consensus        29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (300)
T TIGR00750        29 PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHL  108 (300)
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccc
Confidence            3445678899999999999999998753      22222111111000       0          0000  0       


Q ss_pred             -------------EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHH
Q 020714          182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (322)
Q Consensus       182 -------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~  248 (322)
                                   +...+.++.|+||+|.....               ...+..+|.++++.+..   ...+  +.....
T Consensus       109 ~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e---------------~~i~~~aD~i~vv~~~~---~~~e--l~~~~~  168 (300)
T TIGR00750       109 GGLSQATRELILLLDAAGYDVIIVETVGVGQSE---------------VDIANMADTFVVVTIPG---TGDD--LQGIKA  168 (300)
T ss_pred             cchhHHHHHHHHHHHhCCCCEEEEeCCCCchhh---------------hHHHHhhceEEEEecCC---ccHH--HHHHHH
Confidence                         01136788999999976321               12244568888775442   1111  222222


Q ss_pred             HhcccCCCCCcEEEEEeCCCCCCChhHHH--H-H---HHHHhcC--CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLL--K-V---AEQFKHL--PGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       249 ~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~--~-~---~~~~~~~--~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .+.     .+|.++|+||+|+........  . .   ...+...  .+.++++++||++|.|+++++++|.+...
T Consensus       169 ~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       169 GLM-----EIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHh-----hhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            221     356899999999986532111  0 0   1111111  12246999999999999999999998744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.35  E-value=2.3e-11  Score=105.34  Aligned_cols=168  Identities=17%  Similarity=0.200  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      ||+++|+.|+||||+.+.+..+..+.-....+.|.+....... .+...+.+||+||+..+...+-...       .-..
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~-------~~~i   73 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQ-------REEI   73 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCC-------HHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccccccc-------HHHH
Confidence            6899999999999999999987666544555566555544443 4567999999999986543210000       1123


Q ss_pred             cccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH-------HHHHHHHHhcCCC-CC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-------LLKVAEQFKHLPG-YE  290 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~-------~~~~~~~~~~~~~-~~  290 (322)
                      ++.++++|||+|+....-..+ ..+...+..+.. ..|+..+-+.+.|+|+......       .+...+...+... ..
T Consensus        74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~-~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~  152 (232)
T PF04670_consen   74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQ-YSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDI  152 (232)
T ss_dssp             HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHH-HSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSE
T ss_pred             HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHH-hCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccce
Confidence            678899999999963321111 133334444332 3457789999999999865321       1222333333221 13


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      .++.+|-.. ..+-+.|..|++.+..+
T Consensus       153 ~~~~TSI~D-~Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  153 TFFLTSIWD-ESLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             EEEEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred             EEEeccCcC-cHHHHHHHHHHHHHccc
Confidence            578899887 58888888888877653

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.34  E-value=3.2e-12  Score=111.74  Aligned_cols=122  Identities=20%  Similarity=0.218  Sum_probs=61.0

Q ss_pred             cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV  267 (322)
Q Consensus       188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~  267 (322)
                      .+.++||||+.+...   ....-..+-+.+.. ...-++++++|+.. .+.....+..++..+...-.-..|.|.|+||+
T Consensus        92 ~y~l~DtPGQiElf~---~~~~~~~i~~~L~~-~~~~~~v~LvD~~~-~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~  166 (238)
T PF03029_consen   92 DYLLFDTPGQIELFT---HSDSGRKIVERLQK-NGRLVVVFLVDSSF-CSDPSKFVSSLLLSLSIMLRLELPHVNVLSKI  166 (238)
T ss_dssp             SEEEEE--SSHHHHH---HSHHHHHHHHTSSS-----EEEEEE-GGG--SSHHHHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred             cEEEEeCCCCEEEEE---echhHHHHHHHHhh-hcceEEEEEEeccc-ccChhhHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence            789999999986432   11111122222222 33457888899843 23333333333322221111246899999999


Q ss_pred             CCCCCh--h--------------------HHHHHHHHHhcCCCCC-cEEEeecCCCCCHHHHHHHHHHHh
Q 020714          268 DLVTKK--K--------------------DLLKVAEQFKHLPGYE-RIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       268 Dl~~~~--~--------------------~~~~~~~~~~~~~~~~-~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      |+....  .                    ........+-+.++.. +++++|+.+++|+++|+..|.+++
T Consensus       167 Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  167 DLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             CcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            998721  0                    0111122233345555 799999999999999999998875

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.34  E-value=2.2e-11  Score=104.67  Aligned_cols=57  Identities=25%  Similarity=0.345  Sum_probs=41.8

Q ss_pred             CcEEEEEeCCCCCCChh-HHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          258 QKRVLCMNKVDLVTKKK-DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       258 ~p~ivV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      .|.++++||+|+..... ........+....+..+++++||++|.|++++++++.+..
T Consensus       149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45899999999975422 2333344444444455799999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.34  E-value=8.4e-12  Score=102.98  Aligned_cols=80  Identities=25%  Similarity=0.270  Sum_probs=56.7

Q ss_pred             EEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-hHHHHHHHHHhcCCCCCcEEEeecCCCCCH
Q 020714          225 VLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGL  303 (322)
Q Consensus       225 ~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi  303 (322)
                      +-++|+|++.+..-+.        +. .+... .-.++|+||.|+.+.. .+.+...+.....++..+++++|+++|+|+
T Consensus       120 ~~v~VidvteGe~~P~--------K~-gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~  189 (202)
T COG0378         120 LRVVVIDVTEGEDIPR--------KG-GPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL  189 (202)
T ss_pred             eEEEEEECCCCCCCcc--------cC-CCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence            7788888865533221        10 00011 1379999999998763 345555666777778889999999999999


Q ss_pred             HHHHHHHHHHh
Q 020714          304 KALTQYLMEQF  314 (322)
Q Consensus       304 ~el~~~i~~~l  314 (322)
                      +++++|+....
T Consensus       190 ~~~~~~i~~~~  200 (202)
T COG0378         190 DEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHhhc
Confidence            99999998764

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.33  E-value=1.4e-11  Score=93.78  Aligned_cols=142  Identities=19%  Similarity=0.268  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +++++|..|+|||||.+.|.|.....-        .++...+ .+.   ..+||||--..        ....+...+...
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--------KTQAve~-~d~---~~IDTPGEy~~--------~~~~Y~aL~tt~   62 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--------KTQAVEF-NDK---GDIDTPGEYFE--------HPRWYHALITTL   62 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhc--------ccceeec-cCc---cccCCchhhhh--------hhHHHHHHHHHh
Confidence            689999999999999999988653211        1111111 111   35899996422        122344445556


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      ..+|++++|-.+.++.+..-    ..+..+.     .+|+|-|++|+|+..+ .++....+.+.+ -|..++|.+|+.++
T Consensus        63 ~dadvi~~v~~and~~s~f~----p~f~~~~-----~k~vIgvVTK~DLaed-~dI~~~~~~L~e-aGa~~IF~~s~~d~  131 (148)
T COG4917          63 QDADVIIYVHAANDPESRFP----PGFLDIG-----VKKVIGVVTKADLAED-ADISLVKRWLRE-AGAEPIFETSAVDN  131 (148)
T ss_pred             hccceeeeeecccCccccCC----ccccccc-----ccceEEEEecccccch-HhHHHHHHHHHH-cCCcceEEEeccCc
Confidence            78899999998866543322    2222222     4569999999999863 444443444443 35668999999999


Q ss_pred             CCHHHHHHHHHHH
Q 020714          301 AGLKALTQYLMEQ  313 (322)
Q Consensus       301 ~gi~el~~~i~~~  313 (322)
                      .|+++|++.+...
T Consensus       132 ~gv~~l~~~L~~~  144 (148)
T COG4917         132 QGVEELVDYLASL  144 (148)
T ss_pred             ccHHHHHHHHHhh
Confidence            9999999988653

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.32  E-value=7.6e-11  Score=108.10  Aligned_cols=168  Identities=12%  Similarity=0.189  Sum_probs=102.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC----eee-----------eecCCCC---ceeeeEE---EE--Eee---CCccEE
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT----KVA-----------AVSRKTN---TTTHEVL---GV--MTK---ADTQIC  190 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~----~~~-----------~~~~~~~---~t~~~~~---~~--~~~---~~~~~~  190 (322)
                      ...+-|+++|+-|+|||||||++.+.    ...           -+++.+|   +|+++..   ..  +..   ...++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            45677999999999999999999987    444           4566677   5555443   11  111   136889


Q ss_pred             EEeCCCcccCCC-------------------CCChhhHHHHHHHHHhhcc-cccEEEEEE-eCC------CCCCCcHHHH
Q 020714          191 IFDTPGLMLNKS-------------------GYSHKDVKVRVESAWSAVN-LFEVLMVVF-DVH------RHLTSPDSRV  243 (322)
Q Consensus       191 l~DtpG~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-~ad~ii~v~-D~s------~~~~~~~~~~  243 (322)
                      ++||+|+.....                   ..+++..++  --+...+. ++|+.++|. |.+      ....+.+.  
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAe--iGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe--  170 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAE--IGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEE--  170 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhh--hhHHHHHHhcCcEEEEEEcCCCccccccccchHHHH--
Confidence            999999975432                   222222221  11334455 889999998 774      22233333  


Q ss_pred             HHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       244 ~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                       .++.+++..   ++|+++|+||+|-...  ........+...++. +++++||.. -.-+++...+.+.+++
T Consensus       171 -~~i~eLk~~---~kPfiivlN~~dp~~~--et~~l~~~l~eky~v-pvl~v~c~~-l~~~DI~~il~~vL~E  235 (492)
T TIGR02836       171 -RVIEELKEL---NKPFIILLNSTHPYHP--ETEALRQELEEKYDV-PVLAMDVES-MRESDILSVLEEVLYE  235 (492)
T ss_pred             -HHHHHHHhc---CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCC-ceEEEEHHH-cCHHHHHHHHHHHHhc
Confidence             444444443   4679999999994322  133334455555665 588888853 3556666666666654

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.32  E-value=5.5e-11  Score=114.74  Aligned_cols=131  Identities=18%  Similarity=0.177  Sum_probs=82.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCC-CCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ..-.++|+++|.+||||||++|.|++.....+... ++||. .........+..+.++||||+.......  ........
T Consensus       115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq--~~neeILk  191 (763)
T TIGR00993       115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQ--SKNEKILS  191 (763)
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccch--HHHHHHHH
Confidence            34467899999999999999999999876665554 45554 3333344567889999999998653211  11122222


Q ss_pred             HHHhhc--ccccEEEEEEeCCCCCCC-cHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCC
Q 020714          215 SAWSAV--NLFEVLMVVFDVHRHLTS-PDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVT  271 (322)
Q Consensus       215 ~~~~~~--~~ad~ii~v~D~s~~~~~-~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~  271 (322)
                      .....+  ...|++|+|..++..... .+..+...+.. ++....  ..+|||+|+.|..+
T Consensus       192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tIVVFThgD~lp  250 (763)
T TIGR00993       192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEEEEEeCCccCC
Confidence            222222  357999999877533332 23334444443 343222  34899999999986

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.31  E-value=8.4e-12  Score=106.18  Aligned_cols=165  Identities=18%  Similarity=0.274  Sum_probs=108.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...-+|+++|.|.||||||+..+++-+.. ....-.||.....+++...+..++++|.||+.+... .+    .-.-++.
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAs-qg----kGRGRQv  133 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGAS-QG----KGRGRQV  133 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccc-cC----CCCCceE
Confidence            34568999999999999999999875532 233445777777788888999999999999986432 11    0112334


Q ss_pred             HhhcccccEEEEEEeCCCCCCC-------------------------------------------cHHHHHHHHHHhccc
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTS-------------------------------------------PDSRVIRLIERMGKQ  253 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~-------------------------------------------~~~~~~~~l~~~~~~  253 (322)
                      ....+.||++++|+|++.+...                                           .+..+...+.+++..
T Consensus       134 iavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~  213 (364)
T KOG1486|consen  134 IAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIH  213 (364)
T ss_pred             EEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeec
Confidence            4556888999999999653211                                           001111122222221


Q ss_pred             CCC---------------------CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714          254 APP---------------------KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       254 ~~~---------------------~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~  312 (322)
                      +..                     =.+.+.|.||+|...-     +..++++..   +.-+-+||..+.|++.+++.|.+
T Consensus       214 Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~-----eevdrlAr~---PnsvViSC~m~lnld~lle~iWe  285 (364)
T KOG1486|consen  214 NAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSI-----EEVDRLARQ---PNSVVISCNMKLNLDRLLERIWE  285 (364)
T ss_pred             cceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecH-----HHHHHHhcC---CCcEEEEeccccCHHHHHHHHHH
Confidence            110                     0456888888886653     223444433   34688999999999999999998


Q ss_pred             Hhh
Q 020714          313 QFK  315 (322)
Q Consensus       313 ~l~  315 (322)
                      .+.
T Consensus       286 ~l~  288 (364)
T KOG1486|consen  286 ELN  288 (364)
T ss_pred             Hhc
Confidence            774

>PRK13796 GTPase YqeH; Provisional

Probab=99.30  E-value=2.1e-11  Score=113.37  Aligned_cols=106  Identities=20%  Similarity=0.315  Sum_probs=71.7

Q ss_pred             CCCCCCCCC----ChhhHHHHHHh-hCC---eEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 020714           63 PQNNNAAKK----QEPTWDEKYRE-RTD---RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVK  133 (322)
Q Consensus        63 ~k~dl~~~~----~~~~w~~~~~~-~~~---~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  133 (322)
                      ||+||.+++    ....|..++.. .+.   .+++.++ ++.+..++++.              +...            
T Consensus       104 NK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~--------------I~~~------------  157 (365)
T PRK13796        104 NKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEA--------------IEKY------------  157 (365)
T ss_pred             EchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHH--------------HHHh------------
Confidence            899997653    34567665543 332   4677777 77776666211              1110            


Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHhCC-----eeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                         ....++.++|.||||||||||+|++.     +...++..||||++.....+.   ....++||||+...
T Consensus       158 ---~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~---~~~~l~DTPGi~~~  223 (365)
T PRK13796        158 ---REGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD---DGSFLYDTPGIIHR  223 (365)
T ss_pred             ---cCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC---CCcEEEECCCcccc
Confidence               01246999999999999999999854     345678899999987764332   23589999999743

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.29  E-value=1.2e-11  Score=96.01  Aligned_cols=161  Identities=17%  Similarity=0.202  Sum_probs=105.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..+.++++++|-.|+|||||+..|.+.+.....+.-|......   -..+...+.+||..|...             ++.
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v---~~~g~f~LnvwDiGGqr~-------------IRp   77 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKV---EYDGTFHLNVWDIGGQRG-------------IRP   77 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEE---eecCcEEEEEEecCCccc-------------cch
Confidence            4578999999999999999999999887655555444433222   223457899999999863             222


Q ss_pred             HHh-hcccccEEEEEEeCCCCCCCcHH--HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHH-HHHHHhcC-CCCC
Q 020714          216 AWS-AVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK-VAEQFKHL-PGYE  290 (322)
Q Consensus       216 ~~~-~~~~ad~ii~v~D~s~~~~~~~~--~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~-~~~~~~~~-~~~~  290 (322)
                      .|. ++.+.|.+|||+|..+....++.  .+.++++..+..   .+|+++..||.|+.......+. ....+..+ ...-
T Consensus        78 yWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~---~vpvlIfankQdlltaa~~eeia~klnl~~lrdRsw  154 (185)
T KOG0074|consen   78 YWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLA---EVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSW  154 (185)
T ss_pred             hhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhh---ccceeehhhhhHHHhhcchHHHHHhcchhhhhhceE
Confidence            232 45777999999997554322221  333444444433   5789999999999764322111 11111111 0112


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .+.+|||.+++|+.+-.+|+.....
T Consensus       155 hIq~csals~eg~~dg~~wv~sn~~  179 (185)
T KOG0074|consen  155 HIQECSALSLEGSTDGSDWVQSNPE  179 (185)
T ss_pred             EeeeCccccccCccCcchhhhcCCC
Confidence            5889999999999999999886554

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.28  E-value=9.7e-12  Score=117.06  Aligned_cols=162  Identities=19%  Similarity=0.214  Sum_probs=106.8

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCC-CCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      +....++|+++|..||||||||-+|++.++.. +.+. +..+..   ...........++||+.-...         .  
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~~---------~--   70 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSDD---------R--   70 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccCcCcCceEEEecccccch---------h--
Confidence            44578999999999999999999999876543 2111 112221   113345666899999743321         1  


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC--CCCCcEEEEEeCCCCCCChhH-----HHHHHHHHhc
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKD-----LLKVAEQFKH  285 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~--~~~~p~ivV~NK~Dl~~~~~~-----~~~~~~~~~~  285 (322)
                       .....+++.||++++++++++..+-. .-...||-.+....  ..+.|+|+|+||+|...+...     +..++.++.+
T Consensus        71 -~~l~~EirkA~vi~lvyavd~~~T~D-~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E  148 (625)
T KOG1707|consen   71 -LCLRKEIRKADVICLVYAVDDESTVD-RISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE  148 (625)
T ss_pred             -HHHHHHHhhcCEEEEEEecCChHHhh-hhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH
Confidence             11124577889999999986643332 22334554444322  235899999999999875432     3444455544


Q ss_pred             CCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          286 LPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       286 ~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .   ..+++|||++-.++.|+|....+++.
T Consensus       149 i---EtciecSA~~~~n~~e~fYyaqKaVi  175 (625)
T KOG1707|consen  149 I---ETCIECSALTLANVSELFYYAQKAVI  175 (625)
T ss_pred             H---HHHHhhhhhhhhhhHhhhhhhhheee
Confidence            3   46899999999999999998877654

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=3.8e-11  Score=95.80  Aligned_cols=162  Identities=14%  Similarity=0.165  Sum_probs=105.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      .++.-++++.|-.|+|||||++.|...+..+.-++.+.|.    ..+..++..++.+|..|...            .-+-
T Consensus        17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS----E~l~Ig~m~ftt~DLGGH~q------------Arr~   80 (193)
T KOG0077|consen   17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS----EELSIGGMTFTTFDLGGHLQ------------ARRV   80 (193)
T ss_pred             hccCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh----HHheecCceEEEEccccHHH------------HHHH
Confidence            3456789999999999999999999887766555444433    33457899999999999642            1222


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHH-HHH---HHHhcCCC---
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL-KVA---EQFKHLPG---  288 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~-~~~---~~~~~~~~---  288 (322)
                      .-..+..+|.+++.+|+.+.....+... ++-.-+......+.|+++.+||+|...+..+.+ ...   ..+....+   
T Consensus        81 wkdyf~~v~~iv~lvda~d~er~~es~~-eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~  159 (193)
T KOG0077|consen   81 WKDYFPQVDAIVYLVDAYDQERFAESKK-ELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVN  159 (193)
T ss_pred             HHHHHhhhceeEeeeehhhHHHhHHHHH-HHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhccccccc
Confidence            2345688899999999976554443311 111111222234688999999999987642211 111   11111111   


Q ss_pred             -------CCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          289 -------YERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       289 -------~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                             -..++.||...+.|..+.|.|+...+
T Consensus       160 ~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  160 LTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             ccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence                   11479999999999999998886543

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.25  E-value=1.5e-10  Score=118.74  Aligned_cols=146  Identities=18%  Similarity=0.234  Sum_probs=87.9

Q ss_pred             CchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee------------------CCccEEEEeCCCcccCCCCCChhhHHH
Q 020714          150 AGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------ADTQICIFDTPGLMLNKSGYSHKDVKV  211 (322)
Q Consensus       150 vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~l~DtpG~~~~~~~~~~~~~~~  211 (322)
                      ++||||+.+|.+..++. +...|.|.+.-...+..                  .-..+.||||||+..+..      .  
T Consensus       472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~------l--  542 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTS------L--  542 (1049)
T ss_pred             cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHH------H--
Confidence            56999999999877643 22223332211111111                  113489999999764311      1  


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-----------------
Q 020714          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-----------------  274 (322)
Q Consensus       212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-----------------  274 (322)
                          ....+..+|++++|+|++++...+.......+...      +.|+++|+||+|+.+...                 
T Consensus       543 ----r~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~------~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~  612 (1049)
T PRK14845        543 ----RKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY------KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQH  612 (1049)
T ss_pred             ----HHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc------CCCEEEEEECCCCccccccccchhhhhhhhhhHHH
Confidence                11235678999999999876544443343433332      467999999999964210                 


Q ss_pred             HHHHH-------HHHH-------------hcCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          275 DLLKV-------AEQF-------------KHLPGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       275 ~~~~~-------~~~~-------------~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      ...+.       ...+             .+..+..+++++||++|+||++|+.+|....
T Consensus       613 ~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        613 ALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             HHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence            00111       0001             1223456899999999999999999987543

>cd01900 YchF YchF subfamily

Probab=99.24  E-value=2.8e-11  Score=107.48  Aligned_cols=86  Identities=22%  Similarity=0.313  Sum_probs=66.6

Q ss_pred             EEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc-----------------cEEEEeCCCcccCCCCC
Q 020714          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-----------------QICIFDTPGLMLNKSGY  204 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~DtpG~~~~~~~~  204 (322)
                      |+++|.||||||||+|+|++... .+++.|++|.+...+.....+.                 .+.++|+||+.....  
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~--   77 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS--   77 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc--
Confidence            57999999999999999999886 7788899998887776554433                 389999999985322  


Q ss_pred             ChhhHHHHHHHHHhhcccccEEEEEEeCC
Q 020714          205 SHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (322)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~ad~ii~v~D~s  233 (322)
                         .......+.+..++.+|++++|+|+.
T Consensus        78 ---~~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          78 ---KGEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             ---hhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence               11122345667788999999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.24  E-value=9.1e-11  Score=108.98  Aligned_cols=124  Identities=19%  Similarity=0.206  Sum_probs=83.4

Q ss_pred             CCceEEEccccCCCCCC-----------------CCCCCCCCCCC----hhhHHH-HHHhhCC---eEEEeec-cccchh
Q 020714           45 DCDSVFDSSYFRIPTID-----------------DPQNNNAAKKQ----EPTWDE-KYRERTD---RIVFGEE-AQKGKL   98 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~~-----------------~~k~dl~~~~~----~~~w~~-~~~~~~~---~i~f~~~-~~~~~~   98 (322)
                      ..++++-+.|+..+..+                 .||+|+.++..    ...|.. ++.+.+.   .+++.++ ++.+..
T Consensus        63 ~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~  142 (360)
T TIGR03597        63 SNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGID  142 (360)
T ss_pred             CCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHH
Confidence            56788877776544322                 28999987643    455653 3444443   3677787 777777


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCe-----eeeecCCCCc
Q 020714           99 RIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAVSRKTNT  173 (322)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~-----~~~~~~~~~~  173 (322)
                      ++++..              ...               ..+.+++++|.+|||||||+|+|++..     .+.++..||+
T Consensus       143 eL~~~l--------------~~~---------------~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgt  193 (360)
T TIGR03597       143 ELLDKI--------------KKA---------------RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGT  193 (360)
T ss_pred             HHHHHH--------------HHH---------------hCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCe
Confidence            662111              110               013579999999999999999998743     4678888999


Q ss_pred             eeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          174 TTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       174 t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      |.......+   +..+.++||||+...
T Consensus       194 T~~~~~~~~---~~~~~l~DtPG~~~~  217 (360)
T TIGR03597       194 TLDLIEIPL---DDGHSLYDTPGIINS  217 (360)
T ss_pred             EeeEEEEEe---CCCCEEEECCCCCCh
Confidence            988665332   345689999999754

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>smart00053 DYNc Dynamin, GTPase

Probab=99.23  E-value=1.3e-09  Score=95.11  Aligned_cols=83  Identities=16%  Similarity=0.318  Sum_probs=49.7

Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHH-HHhhcc-cccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEE
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVES-AWSAVN-LFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-~~~~~~-~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ..++|+||||+...............+.. +..++. ..+++++|+|+.......+. .+..++..   .   ..|+++|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~---~~rti~V  198 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---Q---GERTIGV  198 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---c---CCcEEEE
Confidence            67899999999633211111222222333 344455 44699999998765555442 33333333   2   4569999


Q ss_pred             EeCCCCCCChhH
Q 020714          264 MNKVDLVTKKKD  275 (322)
Q Consensus       264 ~NK~Dl~~~~~~  275 (322)
                      +||+|......+
T Consensus       199 iTK~D~~~~~~~  210 (240)
T smart00053      199 ITKLDLMDEGTD  210 (240)
T ss_pred             EECCCCCCccHH
Confidence            999999875443

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=2.1e-10  Score=105.34  Aligned_cols=157  Identities=17%  Similarity=0.270  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCee--eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .|+-.|.---|||||+..+++...  ......-|+|.+.........+..+.|+|.||...+            +..++.
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~------------i~~mia   69 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF------------ISNLLA   69 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH------------HHHHHh
Confidence            367778888999999999998643  334456688888877777777788999999998643            556666


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC--CCCCcEEEee
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTS  296 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~iS  296 (322)
                      .+...|..++|+|+.++...+..+....+..++..     ..++|+||+|..+.. ..++..+.+...  +...+++.+|
T Consensus        70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~-----~giivltk~D~~d~~-r~e~~i~~Il~~l~l~~~~i~~~s  143 (447)
T COG3276          70 GLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIK-----NGIIVLTKADRVDEA-RIEQKIKQILADLSLANAKIFKTS  143 (447)
T ss_pred             hhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCC-----ceEEEEeccccccHH-HHHHHHHHHHhhcccccccccccc
Confidence            77888999999999887777766666777777754     269999999998753 222222222221  3455789999


Q ss_pred             cCCCCCHHHHHHHHHHHhh
Q 020714          297 GLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~  315 (322)
                      +++|+||++|.+.|.+...
T Consensus       144 ~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         144 AKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             cccCCCHHHHHHHHHHhhh
Confidence            9999999999999999884

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.22  E-value=1.3e-10  Score=96.18  Aligned_cols=113  Identities=23%  Similarity=0.359  Sum_probs=67.0

Q ss_pred             EEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeE-------------------------------------------
Q 020714          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV-------------------------------------------  178 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~-------------------------------------------  178 (322)
                      |+|+|..++|||||||+|+|.....++..+.|...+.                                           
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            6899999999999999999976544333332111100                                           


Q ss_pred             ------------EEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHH
Q 020714          179 ------------LGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL  246 (322)
Q Consensus       179 ------------~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~  246 (322)
                                  ..........+.|+||||+........        .-+...+..+|++++|+++....+..+  ...+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~--------~~~~~~~~~~d~vi~V~~~~~~~~~~~--~~~l  150 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT--------EITEEYLPKADVVIFVVDANQDLTESD--MEFL  150 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS--------HHHHHHHSTTEEEEEEEETTSTGGGHH--HHHH
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhH--------HHHHHhhccCCEEEEEeccCcccchHH--HHHH
Confidence                        000111235689999999975322211        222244588899999999976544433  3333


Q ss_pred             HHHhcccCCCCCcEEEEEeCC
Q 020714          247 IERMGKQAPPKQKRVLCMNKV  267 (322)
Q Consensus       247 l~~~~~~~~~~~p~ivV~NK~  267 (322)
                      .+.....   ...+++|.||+
T Consensus       151 ~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  151 KQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             HHHHTTT---CSSEEEEEE-G
T ss_pred             HHHhcCC---CCeEEEEEcCC
Confidence            3333332   23399999995

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.21  E-value=1.1e-10  Score=104.07  Aligned_cols=151  Identities=18%  Similarity=0.243  Sum_probs=104.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCee-----------------e---------------eecCCCCceeeeEEEEEee
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV-----------------A---------------AVSRKTNTTTHEVLGVMTK  184 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~-----------------~---------------~~~~~~~~t~~~~~~~~~~  184 (322)
                      +..++++-+|.-.=||||||-+|+....                 .               +.....|.|.+....++.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            4568899999999999999999874210                 0               0112236777777777777


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      ...+|.+.||||.+++            .+.+..-..-||+.|+++|+..+..++...-.....-++..     .+++.+
T Consensus        84 ~KRkFIiADTPGHeQY------------TRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIr-----hvvvAV  146 (431)
T COG2895          84 EKRKFIIADTPGHEQY------------TRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIR-----HVVVAV  146 (431)
T ss_pred             ccceEEEecCCcHHHH------------hhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCc-----EEEEEE
Confidence            7889999999998755            34444566788999999999777665554444444444533     389999


Q ss_pred             eCCCCCCChh-HHHHHH---HHHhcCCCC--CcEEEeecCCCCCHH
Q 020714          265 NKVDLVTKKK-DLLKVA---EQFKHLPGY--ERIFMTSGLKGAGLK  304 (322)
Q Consensus       265 NK~Dl~~~~~-~~~~~~---~~~~~~~~~--~~~~~iSa~~g~gi~  304 (322)
                      ||+||++..+ ..+++.   ..|+...+.  ..++++||+.|+|+-
T Consensus       147 NKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         147 NKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             eeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            9999998654 233322   233333333  258999999999984

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.19  E-value=5.8e-11  Score=101.52  Aligned_cols=161  Identities=22%  Similarity=0.305  Sum_probs=108.7

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      -+|+++|.|.|||||++..|.+-.. .+....++|-.+..+.....+..+.+.|.||+.+...+-.     -.-++.+..
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgk-----grg~qviav  133 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK-----GRGKQVIAV  133 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCC-----CCccEEEEE
Confidence            3899999999999999999988643 3555667777777777778899999999999986532110     112334456


Q ss_pred             cccccEEEEEEeCCCCCCCc--------------------------------------HH-HHH----------------
Q 020714          220 VNLFEVLMVVFDVHRHLTSP--------------------------------------DS-RVI----------------  244 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~--------------------------------------~~-~~~----------------  244 (322)
                      .+.|.++++|+|+..+.+..                                      +. .+.                
T Consensus       134 artcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr  213 (358)
T KOG1487|consen  134 ARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALR  213 (358)
T ss_pred             eecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeee
Confidence            68889999999986543220                                      00 011                


Q ss_pred             ------HHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          245 ------RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       245 ------~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                            .++..+..... -+|.+.++||+|...-++        +.-.+..+..+++||.+++|++++++.+.+.+.
T Consensus       214 ~DaT~DdLIdvVegnr~-yVp~iyvLNkIdsISiEE--------Ldii~~iphavpISA~~~wn~d~lL~~mweyL~  281 (358)
T KOG1487|consen  214 FDATADDLIDVVEGNRI-YVPCIYVLNKIDSISIEE--------LDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK  281 (358)
T ss_pred             cCcchhhhhhhhccCce-eeeeeeeecccceeeeec--------cceeeeccceeecccccccchHHHHHHHhhcch
Confidence                  11111111100 267889999999765321        222345567899999999999999999887654

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=3.3e-10  Score=102.61  Aligned_cols=90  Identities=21%  Similarity=0.312  Sum_probs=68.0

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC------------------CccEEEEeCCCcccC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------------------DTQICIFDTPGLMLN  200 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~l~DtpG~~~~  200 (322)
                      .++++|||.||||||||.|+++... +...+.|.+|.++..+.....                  ...+.|+|.+|+...
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            4689999999999999999999988 778889999988777653221                  124689999999854


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~  234 (322)
                      .+ .+ .   -.-.+.+..++.+|++++|+|++.
T Consensus        81 As-~G-e---GLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          81 AS-KG-E---GLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             cc-cC-C---CcchHHHHhhhhcCeEEEEEEecC
Confidence            32 11 0   112455678899999999999873

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.17  E-value=2.4e-10  Score=90.19  Aligned_cols=166  Identities=15%  Similarity=0.210  Sum_probs=108.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      -.++|+++|.+.+|||||+-...+....+ .....|.........+......+.+||..|..++..-.+           
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lP-----------   87 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLP-----------   87 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCc-----------
Confidence            46899999999999999998888765432 122233322222222222345668999999986544222           


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC--h---hHHHHHHHHHhcCCCCCc
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK--K---KDLLKVAEQFKHLPGYER  291 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~--~---~~~~~~~~~~~~~~~~~~  291 (322)
                       -....+-+++++||.+++.+.  ..+..|.+.....+..-+| |+|++|-|+.-.  .   ..+....+.+++.... +
T Consensus        88 -iac~dsvaIlFmFDLt~r~TL--nSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA-s  162 (205)
T KOG1673|consen   88 -IACKDSVAILFMFDLTRRSTL--NSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNA-S  162 (205)
T ss_pred             -eeecCcEEEEEEEecCchHHH--HHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC-c
Confidence             235677889999999876544  3466676666554443333 678999997532  1   1222233444444433 6


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      .|+||+....|++.+|..+...+....+
T Consensus       163 L~F~Sts~sINv~KIFK~vlAklFnL~~  190 (205)
T KOG1673|consen  163 LFFCSTSHSINVQKIFKIVLAKLFNLPW  190 (205)
T ss_pred             EEEeeccccccHHHHHHHHHHHHhCCce
Confidence            9999999999999999999988876544

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=2.8e-10  Score=109.50  Aligned_cols=162  Identities=20%  Similarity=0.290  Sum_probs=102.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeee-----ecCCCCceeeeEEEE------------EeeCCccEEEEeCCCccc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-----VSRKTNTTTHEVLGV------------MTKADTQICIFDTPGLML  199 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~-----~~~~~~~t~~~~~~~------------~~~~~~~~~l~DtpG~~~  199 (322)
                      -+.+.|+|+|.-.+|||-|+..+.+..+..     .....|.|......+            ....-..+.++||||...
T Consensus       473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs  552 (1064)
T KOG1144|consen  473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES  552 (1064)
T ss_pred             cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence            355677899999999999999998765432     111222222211100            011234689999999876


Q ss_pred             CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC-----hh
Q 020714          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----KK  274 (322)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~-----~~  274 (322)
                      |.....            .....||++|+|+|+.++...+......+|+.      .+.|+|+.+||+|....     ..
T Consensus       553 FtnlRs------------rgsslC~~aIlvvdImhGlepqtiESi~lLR~------rktpFivALNKiDRLYgwk~~p~~  614 (1064)
T KOG1144|consen  553 FTNLRS------------RGSSLCDLAILVVDIMHGLEPQTIESINLLRM------RKTPFIVALNKIDRLYGWKSCPNA  614 (1064)
T ss_pred             hhhhhh------------ccccccceEEEEeehhccCCcchhHHHHHHHh------cCCCeEEeehhhhhhcccccCCCc
Confidence            543111            23467899999999988765554444444443      25679999999998742     00


Q ss_pred             ------------H-------HHHHHHHHhcC-------------CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          275 ------------D-------LLKVAEQFKHL-------------PGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       275 ------------~-------~~~~~~~~~~~-------------~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                                  .       +..++..|+.+             ..+..++++||.+|+||.+|+-+|++....
T Consensus       615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk  688 (1064)
T KOG1144|consen  615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK  688 (1064)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence                        0       11122222221             122358999999999999999999987654

>PTZ00416 elongation factor 2; Provisional

Probab=99.16  E-value=3.9e-10  Score=115.19  Aligned_cols=116  Identities=20%  Similarity=0.214  Sum_probs=75.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCC---------------CceeeeEEEEEeeC----------CccEEE
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT---------------NTTTHEVLGVMTKA----------DTQICI  191 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~---------------~~t~~~~~~~~~~~----------~~~~~l  191 (322)
                      .+..+|+++|..++|||||+++|+...-.......               |.|.......+...          +..+.|
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            34558999999999999999999853211111111               22222211112222          456899


Q ss_pred             EeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714          192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (322)
Q Consensus       192 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~  270 (322)
                      +||||+..+            ...+...+..+|++|+|+|+..+...+...+...+...      +.|+++++||+|+.
T Consensus        97 iDtPG~~~f------------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~------~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDF------------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE------RIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhH------------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc------CCCEEEEEEChhhh
Confidence            999998753            22344557888999999999887766665554444332      35799999999997

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.15  E-value=1.3e-10  Score=96.62  Aligned_cols=117  Identities=19%  Similarity=0.221  Sum_probs=64.8

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe---eCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT---KADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ..|+++|++|+|||+|...|..+....+-     |.........   ..+..+.++|+||...-..         .+...
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-----tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~---------~~~~~   69 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTV-----TSMENNIAYNVNNSKGKKLRLVDIPGHPRLRS---------KLLDE   69 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B--------SSEEEECCGSSTCGTCECEEEETT-HCCCH---------HHHHH
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCee-----ccccCCceEEeecCCCCEEEEEECCCcHHHHH---------HHHHh
Confidence            45899999999999999999876432211     1111111111   2456899999999864321         22222


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHH----HHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI----ERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l----~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      +.....+.+||+|+|.+.-. ..-..+.++|    ...... ....|++++.||.|+...
T Consensus        70 ~~~~~~~k~IIfvvDSs~~~-~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   70 LKYLSNAKGIIFVVDSSTDQ-KELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             HHHHGGEEEEEEEEETTTHH-HHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT-
T ss_pred             hhchhhCCEEEEEEeCccch-hhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCcccccc
Confidence            23467789999999985311 1112333333    222211 235789999999999865

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.14  E-value=5e-10  Score=113.21  Aligned_cols=117  Identities=22%  Similarity=0.255  Sum_probs=73.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecC---------------CCCceeeeEEEEEe----eCCccEEEEeCCCc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR---------------KTNTTTHEVLGVMT----KADTQICIFDTPGL  197 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~---------------~~~~t~~~~~~~~~----~~~~~~~l~DtpG~  197 (322)
                      .+.-+|+++|..++|||||+++|+...-.....               .-|.|.......+.    ..+..+.|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            345679999999999999999987421110000               01222222211111    13567889999999


Q ss_pred             ccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (322)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~  271 (322)
                      ..+.            ..+...+..+|++++|+|+..+...+...+.......      +.|.|+++||+|+..
T Consensus        98 ~df~------------~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~------~~~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDFG------------GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE------RVKPVLFINKVDRLI  153 (731)
T ss_pred             cChH------------HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc------CCCeEEEEECchhhc
Confidence            7641            2233445777999999999877655554444433322      245799999999863

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=8.4e-10  Score=104.24  Aligned_cols=152  Identities=20%  Similarity=0.290  Sum_probs=103.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC---------------------C-ee--e------eecCCCCceeeeEEEEEeeCCc
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG---------------------T-KV--A------AVSRKTNTTTHEVLGVMTKADT  187 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~---------------------~-~~--~------~~~~~~~~t~~~~~~~~~~~~~  187 (322)
                      ..+.++++|...+|||||+.+|+-                     + .+  +      ......|+|.+.....+.....
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            568899999999999999988752                     0 00  0      1223346777766666766778


Q ss_pred             cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-------CCcHHHHHHHHHHhcccCCCCCcE
Q 020714          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQKR  260 (322)
Q Consensus       188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-------~~~~~~~~~~l~~~~~~~~~~~p~  260 (322)
                      .++|+|+||+..|-+            .++.....+|+.++|+|++.+.       ..+..+...+++.++..     ..
T Consensus       256 ~~tliDaPGhkdFi~------------nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~-----ql  318 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIP------------NMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGIS-----QL  318 (603)
T ss_pred             eEEEecCCCccccch------------hhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcc-----eE
Confidence            899999999876643            4445667789999999997542       22334566677777743     38


Q ss_pred             EEEEeCCCCCCChhH-HHH---HHHHHh-cCCCC----CcEEEeecCCCCCHHHH
Q 020714          261 VLCMNKVDLVTKKKD-LLK---VAEQFK-HLPGY----ERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       261 ivV~NK~Dl~~~~~~-~~~---~~~~~~-~~~~~----~~~~~iSa~~g~gi~el  306 (322)
                      |+++||+|++.-.++ .++   ....|. +..|+    ..+++||+.+|+|+-..
T Consensus       319 ivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  319 IVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             EEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            999999999864332 222   222222 33333    26899999999998654

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.12  E-value=2e-09  Score=99.18  Aligned_cols=159  Identities=18%  Similarity=0.288  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCe--------ee-------eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTK--------VA-------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY  204 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~--------~~-------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~  204 (322)
                      -+|+++-.-.-|||||+..|+...        +.       .....-|.|.-.....+.+.+..+.++||||.-.|... 
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE-   84 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE-   84 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch-
Confidence            468899999999999999987531        10       01112244443333345567889999999999877541 


Q ss_pred             ChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh--hHHHHHHHH
Q 020714          205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVAEQ  282 (322)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~--~~~~~~~~~  282 (322)
                              ++   ..+...|.+++++|+..+.--+...+..-  .+..    +.+-|+|+||+|....+  .+.++..+.
T Consensus        85 --------VE---Rvl~MVDgvlLlVDA~EGpMPQTrFVlkK--Al~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDL  147 (603)
T COG1217          85 --------VE---RVLSMVDGVLLLVDASEGPMPQTRFVLKK--ALAL----GLKPIVVINKIDRPDARPDEVVDEVFDL  147 (603)
T ss_pred             --------hh---hhhhhcceEEEEEEcccCCCCchhhhHHH--HHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHH
Confidence                    12   33566799999999988776665543332  2221    23368999999998764  344454555


Q ss_pred             HhcC------CCCCcEEEeecCCCC----------CHHHHHHHHHHHhhhc
Q 020714          283 FKHL------PGYERIFMTSGLKGA----------GLKALTQYLMEQFKDL  317 (322)
Q Consensus       283 ~~~~------~~~~~~~~iSa~~g~----------gi~el~~~i~~~l~~~  317 (322)
                      |..+      ..+ |+++.|++.|.          ++.-||+.|.+++..-
T Consensus       148 f~~L~A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P  197 (603)
T COG1217         148 FVELGATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP  197 (603)
T ss_pred             HHHhCCChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence            5433      344 69999999986          7889999999988754

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.11  E-value=3.5e-10  Score=114.05  Aligned_cols=116  Identities=19%  Similarity=0.219  Sum_probs=73.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe---------------eeeecCCCCceeeeEEE----EEeeCCccEEEEeCCCcc
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK---------------VAAVSRKTNTTTHEVLG----VMTKADTQICIFDTPGLM  198 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~---------------~~~~~~~~~~t~~~~~~----~~~~~~~~~~l~DtpG~~  198 (322)
                      ...+|+++|..++|||||+++|+...               ........+.|......    .....+..+.++||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            46789999999999999999986420               00000112333322211    123446788999999997


Q ss_pred             cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (322)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~  271 (322)
                      .+.            ..+...+..+|++++|+|+..+...+...+......   .   +.|.++|+||+|...
T Consensus        98 ~f~------------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~---~---~~p~ivviNKiD~~~  152 (720)
T TIGR00490        98 DFG------------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK---E---NVKPVLFINKVDRLI  152 (720)
T ss_pred             ccH------------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH---c---CCCEEEEEEChhccc
Confidence            642            123345677899999999977655544433333222   1   356889999999874

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.09  E-value=5.2e-10  Score=96.87  Aligned_cols=170  Identities=19%  Similarity=0.154  Sum_probs=103.4

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecC-CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC-hhhHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVR  212 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~  212 (322)
                      ..+...+++.|.+|||||+|||.++..+... .+. .+|.|....   ....+..++++|.||.....-+.. .++....
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in---~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAIN---HFHVGKSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeee---eeeccceEEEEecCCcccccCCccCcchHhHh
Confidence            3456889999999999999999998765332 222 455554333   335678899999999543321111 1222222


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-----HHHHHHHHHhcC-
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-----DLLKVAEQFKHL-  286 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-----~~~~~~~~~~~~-  286 (322)
                      ...++.+-..--.+++.+|++.+....+...+.|+.+.      ++|+.+|+||||......     ........+..+ 
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~------~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~  283 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN------NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI  283 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc------CCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence            33333332333446667888777666666666676663      467999999999875421     011111111111 


Q ss_pred             ---C-CCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          287 ---P-GYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       287 ---~-~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                         + ...|.+.+|+.++.|+++|+-.|.+..
T Consensus       284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~  315 (320)
T KOG2486|consen  284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR  315 (320)
T ss_pred             ccceeccCCceeeecccccCceeeeeehhhhh
Confidence               1 112567899999999999987776543

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=3.6e-10  Score=92.23  Aligned_cols=161  Identities=16%  Similarity=0.209  Sum_probs=103.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+++++++|..|.||+|++++.+.+.+.. .....|...+.....-..+..++..|||.|++.+.....           
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd-----------   77 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD-----------   77 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc-----------
Confidence            47899999999999999999977665543 334445444443322222236789999999986543111           


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                       -.+=.....+++||+....+-.+  +..|-+.+... ..++|+++++||.|........+  .-.+-....+ +++++|
T Consensus        78 -gyyI~~qcAiimFdVtsr~t~~n--~~rwhrd~~rv-~~NiPiv~cGNKvDi~~r~~k~k--~v~~~rkknl-~y~~iS  150 (216)
T KOG0096|consen   78 -GYYIQGQCAIIMFDVTSRFTYKN--VPRWHRDLVRV-RENIPIVLCGNKVDIKARKVKAK--PVSFHRKKNL-QYYEIS  150 (216)
T ss_pred             -ccEEecceeEEEeeeeehhhhhc--chHHHHHHHHH-hcCCCeeeeccceeccccccccc--cceeeecccc-eeEEee
Confidence             12233467888899976554433  44444444322 12578999999999876431111  1111122223 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |+++.|.+.-|-|+.+.+..
T Consensus       151 aksn~NfekPFl~LarKl~G  170 (216)
T KOG0096|consen  151 AKSNYNFERPFLWLARKLTG  170 (216)
T ss_pred             cccccccccchHHHhhhhcC
Confidence            99999999999999988754

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=3.2e-09  Score=88.52  Aligned_cols=161  Identities=18%  Similarity=0.228  Sum_probs=94.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .-.|.++|+.++|||+|.-.|..+....    .-+......+.+..++....++|.||...         .+..+...+.
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~----TvtSiepn~a~~r~gs~~~~LVD~PGH~r---------lR~kl~e~~~  104 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRG----TVTSIEPNEATYRLGSENVTLVDLPGHSR---------LRRKLLEYLK  104 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccC----eeeeeccceeeEeecCcceEEEeCCCcHH---------HHHHHHHHcc
Confidence            3469999999999999998887653211    11111122333445566689999999853         2222222222


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc---CCCCCcEEEEEeCCCCCCCh--hH----HHHHHHHHh-----
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKK--KD----LLKVAEQFK-----  284 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~---~~~~~p~ivV~NK~Dl~~~~--~~----~~~~~~~~~-----  284 (322)
                      .-..+-++++|+|...-... -..+.+++-.+-..   .....|++++.||.|+..+.  +.    ++.++..+.     
T Consensus       105 ~~~~akaiVFVVDSa~f~k~-vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa  183 (238)
T KOG0090|consen  105 HNYSAKAIVFVVDSATFLKN-VRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSA  183 (238)
T ss_pred             ccccceeEEEEEeccccchh-hHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence            22367899999998532211 12344443332221   12346799999999997642  11    111111110     


Q ss_pred             -------------------------cCC-CCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          285 -------------------------HLP-GYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       285 -------------------------~~~-~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                                               ... ....+.++|+++| +++++-+||.+++
T Consensus       184 ~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  184 LRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             hhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                                     111 1124788999999 9999999998764

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.8e-09  Score=95.17  Aligned_cols=164  Identities=18%  Similarity=0.284  Sum_probs=102.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeee-------------------ecCCCCce---eeeEEEEEeeCC------cc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-------------------VSRKTNTT---THEVLGVMTKAD------TQ  188 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~-------------------~~~~~~~t---~~~~~~~~~~~~------~~  188 (322)
                      ...++|+.+|.---|||||..+|.|--...                   ....+.+.   ...+...+...+      ..
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            356899999999999999999998721110                   01111111   111111111111      35


Q ss_pred             EEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714          189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKV  267 (322)
Q Consensus       189 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~  267 (322)
                      +.|+|.||.+        ..++    .++.-..-.|+.++|++++.++-.+.. +-...++-++.     +.+|+|-||+
T Consensus        88 VSfVDaPGHe--------~LMA----TMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigi-----k~iiIvQNKI  150 (415)
T COG5257          88 VSFVDAPGHE--------TLMA----TMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGI-----KNIIIVQNKI  150 (415)
T ss_pred             EEEeeCCchH--------HHHH----HHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhcc-----ceEEEEeccc
Confidence            6799999975        2232    233344555999999999887766543 22233444443     3489999999


Q ss_pred             CCCCChhHH---HHHHHHHhcC-CCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          268 DLVTKKKDL---LKVAEQFKHL-PGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       268 Dl~~~~~~~---~~~~~~~~~~-~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      |++..+...   +++.+.+... -...|++++||..+.||+.|+++|.+.+..-
T Consensus       151 DlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         151 DLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             ceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            999865432   2322333222 1234899999999999999999999988754

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.06  E-value=1.3e-09  Score=111.57  Aligned_cols=117  Identities=18%  Similarity=0.213  Sum_probs=75.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCC---------------CceeeeEEEEEee----------------
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT---------------NTTTHEVLGVMTK----------------  184 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~---------------~~t~~~~~~~~~~----------------  184 (322)
                      ..+..+|+++|..++|||||+++|+...-.......               |.|.......+..                
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            345678999999999999999998743211001111               2222221111212                


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      .+..+.|+||||+..|            ...+...+..+|++|+|+|+..+...+...+......   .   +.|+++++
T Consensus        96 ~~~~inliDtPGh~dF------------~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~---~---~~p~i~~i  157 (843)
T PLN00116         96 NEYLINLIDSPGHVDF------------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---E---RIRPVLTV  157 (843)
T ss_pred             CceEEEEECCCCHHHH------------HHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH---C---CCCEEEEE
Confidence            2456789999998754            2333455678899999999987766655544443332   2   45799999


Q ss_pred             eCCCCC
Q 020714          265 NKVDLV  270 (322)
Q Consensus       265 NK~Dl~  270 (322)
                      ||+|..
T Consensus       158 NK~D~~  163 (843)
T PLN00116        158 NKMDRC  163 (843)
T ss_pred             ECCccc
Confidence            999998

>PRK01889 GTPase RsgA; Reviewed

Probab=99.06  E-value=1.9e-10  Score=106.58  Aligned_cols=164  Identities=19%  Similarity=0.207  Sum_probs=90.3

Q ss_pred             CCCceEEEccccCCCCCC-C--------------------CCCCCCCCCC-hhhHHHHHHhhCCeEEEeec-cccchhhh
Q 020714           44 NDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQ-EPTWDEKYRERTDRIVFGEE-AQKGKLRI  100 (322)
Q Consensus        44 ~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~-~~~w~~~~~~~~~~i~f~~~-~~~~~~~~  100 (322)
                      .++|.++-+.++. |.+. .                    ||+||++... ...|...+ ..++.+++.++ ++.+...+
T Consensus       111 ANvD~vliV~s~~-p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~~L  188 (356)
T PRK01889        111 ANVDTVFIVCSLN-HDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLDVL  188 (356)
T ss_pred             EeCCEEEEEEecC-CCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHHHH
Confidence            3678776666665 3333 2                    8999987521 22333333 45678888888 77776665


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecC-------CCCc
Q 020714          101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNT  173 (322)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-------~~~~  173 (322)
                      .              ..    +              ..+-+++++|.+|+|||||+|.|.+......+.       ..++
T Consensus       189 ~--------------~~----L--------------~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t  236 (356)
T PRK01889        189 A--------------AW----L--------------SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT  236 (356)
T ss_pred             H--------------HH----h--------------hcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch
Confidence            1              11    1              123468999999999999999998754332221       1223


Q ss_pred             eeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714          174 TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER  249 (322)
Q Consensus       174 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~  249 (322)
                      |.......+..   ...++||||+..+............|.........    |.+-|. .+..++.+.+...++.
T Consensus       237 t~~~~l~~l~~---~~~l~DtpG~~~~~l~~~~~~l~~~f~~~~~~~~~----c~f~~c-~h~~E~~c~v~~a~~~  304 (356)
T PRK01889        237 TTHRELHPLPS---GGLLIDTPGMRELQLWDAEDGVEETFSDIEELAAQ----CRFRDC-AHEAEPGCAVQAAIEN  304 (356)
T ss_pred             hhhccEEEecC---CCeecCCCchhhhcccCchhhHHHhHHHHHHHHcc----CCCCCC-CCCCCCCChHHHHHHc
Confidence            43333322222   23788999997655432222222333322222222    222233 4445666666655543

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.04  E-value=3.1e-11  Score=98.01  Aligned_cols=165  Identities=21%  Similarity=0.172  Sum_probs=113.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      .-+++.|+|+-||||++++.+.+...+.. .....|+.+.  ..++..+   -.++.|||..|+..+...          
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfa--lkVl~wdd~t~vRlqLwdIagQerfg~m----------   91 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFA--LKVLQWDDKTIVRLQLWDIAGQERFGNM----------   91 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHH--HHHhccChHHHHHHHHhcchhhhhhcce----------
Confidence            35678999999999999999876533221 1111222111  1112222   246789999999865431          


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc----ccCCCCCcEEEEEeCCCCCCChh-HHHHHHHHHhcCCC
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG----KQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQFKHLPG  288 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~----~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~~~~~~~  288 (322)
                        +--.++.+.+..+|||+++..+++.  +..|.+.+.    .......|+++..||||+.+... ........+.+.++
T Consensus        92 --trVyykea~~~~iVfdvt~s~tfe~--~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~keng  167 (229)
T KOG4423|consen   92 --TRVYYKEAHGAFIVFDVTRSLTFEP--VSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENG  167 (229)
T ss_pred             --EEEEecCCcceEEEEEccccccccH--HHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccC
Confidence              1134678899999999988766643  455555543    34444588999999999976432 22355677888899


Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          289 YERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       289 ~~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      +...+++|+|.+.+++|.-+.+++.+..+.
T Consensus       168 f~gwtets~Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  168 FEGWTETSAKENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             ccceeeeccccccChhHHHHHHHHHHHhhc
Confidence            999999999999999999999999876653

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1.4e-08  Score=90.43  Aligned_cols=164  Identities=19%  Similarity=0.327  Sum_probs=97.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCC-----CceeeeEEEEEe-e------C--CccEEEEeCCCcccCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKT-----NTTTHEVLGVMT-K------A--DTQICIFDTPGLMLNK  201 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~-----~~t~~~~~~~~~-~------~--~~~~~l~DtpG~~~~~  201 (322)
                      +..+++++.|.-.+|||||..+|..-. .+.-...|     |.|.+.-...+. .      .  .-.+.++|+||..   
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---   81 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---   81 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH---
Confidence            345899999999999999999986421 11111112     222221111010 1      1  1246899999974   


Q ss_pred             CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh---hHHHH
Q 020714          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLK  278 (322)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~---~~~~~  278 (322)
                           ..    ++..+....--|+.++|+|+..+..-+..+ ...+.++.     ....++|+||+|..+..   ..++.
T Consensus        82 -----sL----IRtiiggaqiiDlm~lviDv~kG~QtQtAE-cLiig~~~-----c~klvvvinkid~lpE~qr~ski~k  146 (522)
T KOG0461|consen   82 -----SL----IRTIIGGAQIIDLMILVIDVQKGKQTQTAE-CLIIGELL-----CKKLVVVINKIDVLPENQRASKIEK  146 (522)
T ss_pred             -----HH----HHHHHhhhheeeeeeEEEehhcccccccch-hhhhhhhh-----ccceEEEEeccccccchhhhhHHHH
Confidence                 22    222233344559999999997654333211 12233322     23489999999987652   22333


Q ss_pred             HHHHHh------cCCCCCcEEEeecCCC----CCHHHHHHHHHHHhhhcC
Q 020714          279 VAEQFK------HLPGYERIFMTSGLKG----AGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       279 ~~~~~~------~~~~~~~~~~iSa~~g----~gi~el~~~i~~~l~~~~  318 (322)
                      ....+.      ...+..|++++||+.|    ++|.+|.+.|...+..-.
T Consensus       147 ~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~  196 (522)
T KOG0461|consen  147 SAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK  196 (522)
T ss_pred             HHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence            222222      2345568999999999    899999999988876543

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.02  E-value=4e-09  Score=94.46  Aligned_cols=128  Identities=16%  Similarity=0.270  Sum_probs=70.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecC--------C-CCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCC-h
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR--------K-TNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYS-H  206 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~--------~-~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~-~  206 (322)
                      .++|+|+|.+|+|||||||.|++........        . ...........+...+  ..+.++||||+........ .
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            5899999999999999999999865433320        1 1111222222233333  3578999999975433211 1


Q ss_pred             hh----HHHHHHHHHhhc----------ccccEEEEEEeCCCC-CCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714          207 KD----VKVRVESAWSAV----------NLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (322)
Q Consensus       207 ~~----~~~~~~~~~~~~----------~~ad~ii~v~D~s~~-~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~  271 (322)
                      ..    +...+...+..-          ...|+++|+++.+.+ ....+.   ..++.+..    .+++|-|+.|+|...
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di---~~mk~Ls~----~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI---EFMKRLSK----RVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH---HHHHHHTT----TSEEEEEESTGGGS-
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH---HHHHHhcc----cccEEeEEecccccC
Confidence            11    222333333311          345999999998643 232232   44555553    356999999999987


Q ss_pred             Ch
Q 020714          272 KK  273 (322)
Q Consensus       272 ~~  273 (322)
                      ..
T Consensus       157 ~~  158 (281)
T PF00735_consen  157 PE  158 (281)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01858 NGP_1 NGP-1

Probab=98.89  E-value=1.3e-08  Score=83.46  Aligned_cols=93  Identities=17%  Similarity=0.180  Sum_probs=68.5

Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      .|..+..+|++++|+|++.+....+..+...+...    ..++|+++|+||+|+.+. .....+...+.+.+... ++++
T Consensus         2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~----~~~~p~ilVlNKiDl~~~-~~~~~~~~~~~~~~~~~-~~~i   75 (157)
T cd01858           2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE----KPHKHLIFVLNKCDLVPT-WVTARWVKILSKEYPTI-AFHA   75 (157)
T ss_pred             hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhc----cCCCCEEEEEEchhcCCH-HHHHHHHHHHhcCCcEE-EEEe
Confidence            35667889999999999877655555565655542    224689999999999754 33445566665554432 6889


Q ss_pred             ecCCCCCHHHHHHHHHHHh
Q 020714          296 SGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l  314 (322)
                      ||++|.|+++++++|.+.+
T Consensus        76 Sa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          76 SINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             eccccccHHHHHHHHHHHH
Confidence            9999999999999998765

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.4e-08  Score=91.22  Aligned_cols=136  Identities=20%  Similarity=0.362  Sum_probs=82.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-------------C------------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-------------A------------------  185 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-------------~------------------  185 (322)
                      ....-|+++|+-..||||+|+.|+..+++.....+..|.+.-..++..             +                  
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            345678999999999999999999887664333232222211111100             0                  


Q ss_pred             ----------CccEEEEeCCCcccCCC-----CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh
Q 020714          186 ----------DTQICIFDTPGLMLNKS-----GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM  250 (322)
Q Consensus       186 ----------~~~~~l~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~  250 (322)
                                =..+.++||||+.....     ++.+....+.|      ...||.|+++||+..  -+...+....+..+
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WF------aeR~D~IiLlfD~hK--LDIsdEf~~vi~aL  207 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWF------AERVDRIILLFDAHK--LDISDEFKRVIDAL  207 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHH------HHhccEEEEEechhh--ccccHHHHHHHHHh
Confidence                      03578999999974322     23333322222      367899999999832  22223455666666


Q ss_pred             cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH
Q 020714          251 GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF  283 (322)
Q Consensus       251 ~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~  283 (322)
                      +....   .+-+|+||.|.++..+-+.-....+
T Consensus       208 kG~Ed---kiRVVLNKADqVdtqqLmRVyGALm  237 (532)
T KOG1954|consen  208 KGHED---KIRVVLNKADQVDTQQLMRVYGALM  237 (532)
T ss_pred             hCCcc---eeEEEeccccccCHHHHHHHHHHHH
Confidence            65533   3889999999988655443333333

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=5.9e-08  Score=84.83  Aligned_cols=163  Identities=19%  Similarity=0.230  Sum_probs=107.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC----------eeeeec-----CCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT----------KVAAVS-----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~----------~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      .+..++|+.+|.-+-|||||..+++.-          .+.+..     ...|.|..+....+...+..+-.+|+||.-. 
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD-   87 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD-   87 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH-
Confidence            345789999999999999998887531          111222     2236777777666667778889999999753 


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHH---
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL---  277 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~---  277 (322)
                                 .+++.+.-....|..|+|+.+.++.--+...-..+.+.++..     .+++++||+|++++.+-++   
T Consensus        88 -----------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp-----~ivvflnK~Dmvdd~ellelVe  151 (394)
T COG0050          88 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVP-----YIVVFLNKVDMVDDEELLELVE  151 (394)
T ss_pred             -----------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCc-----EEEEEEecccccCcHHHHHHHH
Confidence                       456666666778999999999887655554444444554432     3889999999998654332   


Q ss_pred             HHHHHHhcCCCCC----cEEEeecCC-CCC-------HHHHHHHHHHHhh
Q 020714          278 KVAEQFKHLPGYE----RIFMTSGLK-GAG-------LKALTQYLMEQFK  315 (322)
Q Consensus       278 ~~~~~~~~~~~~~----~~~~iSa~~-g~g-------i~el~~~i~~~l~  315 (322)
                      .+...+...++++    |++.-||.. .+|       |.+|++++...+.
T Consensus       152 mEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip  201 (394)
T COG0050         152 MEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP  201 (394)
T ss_pred             HHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence            2334444445543    667767653 232       4666666655544

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.84  E-value=1.7e-07  Score=84.74  Aligned_cols=130  Identities=14%  Similarity=0.213  Sum_probs=77.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeee----cCC-----CCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV----SRK-----TNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYS  205 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~----~~~-----~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~  205 (322)
                      .-.++|+++|++|.|||||+|.|++......    ...     +..........+..++.  .+.++|||||..+-....
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            5689999999999999999999998643221    111     11122222223333343  578999999987755332


Q ss_pred             h-hh----HHHHHHHHHhhc-----------ccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q 020714          206 H-KD----VKVRVESAWSAV-----------NLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD  268 (322)
Q Consensus       206 ~-~~----~~~~~~~~~~~~-----------~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~D  268 (322)
                      . ..    +...+...+..-           ...++++|++..+.+. ...+.   ..++.+..    .+.+|-|+.|+|
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI---e~Mk~ls~----~vNlIPVI~KaD  173 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI---EAMKRLSK----RVNLIPVIAKAD  173 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH---HHHHHHhc----ccCeeeeeeccc
Confidence            1 12    223333333311           4458999999875543 33332   23333332    244899999999


Q ss_pred             CCCCh
Q 020714          269 LVTKK  273 (322)
Q Consensus       269 l~~~~  273 (322)
                      ....+
T Consensus       174 ~lT~~  178 (373)
T COG5019         174 TLTDD  178 (373)
T ss_pred             cCCHH
Confidence            98753

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=1.2e-07  Score=86.32  Aligned_cols=131  Identities=17%  Similarity=0.251  Sum_probs=78.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee------ecCCCCc--eeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA------VSRKTNT--TTHEVLGVMTKADT--QICIFDTPGLMLNKSGYS  205 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~------~~~~~~~--t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~  205 (322)
                      ..-.+.++++|.+|.|||||||.|+......      ....+..  +.......+..+|.  +++++||||+.+.-....
T Consensus        18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~   97 (366)
T KOG2655|consen   18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN   97 (366)
T ss_pred             cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence            3446899999999999999999998763321      1112211  22222223333443  568999999986543221


Q ss_pred             -----hhhHHHHHHHHHhhc----------ccccEEEEEEeCCCC-CCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q 020714          206 -----HKDVKVRVESAWSAV----------NLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL  269 (322)
Q Consensus       206 -----~~~~~~~~~~~~~~~----------~~ad~ii~v~D~s~~-~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl  269 (322)
                           ...+...+.+.+..-          ...++++|++..+.+ ....+...   ++.+..    .+.+|-|+.|+|.
T Consensus        98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~---Mk~l~~----~vNiIPVI~KaD~  170 (366)
T KOG2655|consen   98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEF---MKKLSK----KVNLIPVIAKADT  170 (366)
T ss_pred             cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHH---HHHHhc----cccccceeecccc
Confidence                 122333444444321          356899999998655 33333333   333332    3558999999999


Q ss_pred             CCCh
Q 020714          270 VTKK  273 (322)
Q Consensus       270 ~~~~  273 (322)
                      ....
T Consensus       171 lT~~  174 (366)
T KOG2655|consen  171 LTKD  174 (366)
T ss_pred             CCHH
Confidence            8764

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=4.1e-08  Score=97.41  Aligned_cols=119  Identities=21%  Similarity=0.314  Sum_probs=82.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC-----eeeeec------------CCCCceeeeEEEEEeeCC-ccEEEEeCCCcc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVS------------RKTNTTTHEVLGVMTKAD-TQICIFDTPGLM  198 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~------------~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~  198 (322)
                      .+.-+|+++|.-.+|||||..+|+-.     +...+.            ..-|.|.......+.+.+ ..+.|+||||+.
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV   87 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV   87 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence            35568999999999999999998621     111111            112455555544566664 899999999999


Q ss_pred             cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh
Q 020714          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK  273 (322)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~  273 (322)
                      +|..         .+.   ..++.+|++++|+|+..+...+.+.+.+.....      ++|.++++||+|....+
T Consensus        88 DFt~---------EV~---rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~------~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          88 DFTI---------EVE---RSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY------GVPRILFVNKMDRLGAD  144 (697)
T ss_pred             ccHH---------HHH---HHHHhhcceEEEEECCCCeeecHHHHHHHHhhc------CCCeEEEEECccccccC
Confidence            7743         122   334556999999999887766665555554443      46799999999998653

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.76  E-value=3.4e-08  Score=83.40  Aligned_cols=125  Identities=22%  Similarity=0.266  Sum_probs=81.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH-
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW-  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~-  217 (322)
                      -||.++|.+|+|||++-..+.....+.-...+|.|.+....... .++.-+.+||+.|+..+        +...+.... 
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f--------men~~~~q~d   76 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF--------MENYLSSQED   76 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH--------HHHHHhhcch
Confidence            47999999999999987666655444444556666665554433 34467789999998732        222222111 


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHH-HHHHhcccCCCCCcEEEEEeCCCCCCCh
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIR-LIERMGKQAPPKQKRVLCMNKVDLVTKK  273 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~-~l~~~~~~~~~~~p~ivV~NK~Dl~~~~  273 (322)
                      ..+...+++++|||++...-+.+..... -++.+ .+..|...+.+.+.|.|++...
T Consensus        77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~l-l~~SP~AkiF~l~hKmDLv~~d  132 (295)
T KOG3886|consen   77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEAL-LQNSPEAKIFCLLHKMDLVQED  132 (295)
T ss_pred             hhheeheeeeeeeeccchhhhhhHHHHHHHHHHH-HhcCCcceEEEEEeechhcccc
Confidence            2357889999999997654443332222 23333 3456678899999999998753

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.74  E-value=8.6e-08  Score=84.39  Aligned_cols=88  Identities=20%  Similarity=0.310  Sum_probs=63.7

Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .+.++|.+++|+|+.++.... ..+..|+..+..   .+.|+++|+||+||........+....+.. .+. +++++||+
T Consensus        33 ~~~n~D~viiV~d~~~p~~s~-~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g~-~v~~~SAk  106 (245)
T TIGR00157        33 IVANIDQIVIVSSAVLPELSL-NQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IGY-QVLMTSSK  106 (245)
T ss_pred             ccccCCEEEEEEECCCCCCCH-HHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHHH-CCC-eEEEEecC
Confidence            467889999999997654322 335566655543   357799999999997654444344555554 455 69999999


Q ss_pred             CCCCHHHHHHHHHH
Q 020714          299 KGAGLKALTQYLME  312 (322)
Q Consensus       299 ~g~gi~el~~~i~~  312 (322)
                      +|.|++++++.+..
T Consensus       107 tg~gi~eLf~~l~~  120 (245)
T TIGR00157       107 NQDGLKELIEALQN  120 (245)
T ss_pred             CchhHHHHHhhhcC
Confidence            99999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00092 GTP-binding protein YchF

Probab=98.73  E-value=2.2e-08  Score=92.09  Aligned_cols=89  Identities=21%  Similarity=0.241  Sum_probs=66.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-----------------ccEEEEeCCCcccCCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNKS  202 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~  202 (322)
                      ++++++|.||+|||||.|+|++.....+...|.+|.....+.....+                 ..+.+.|.||+.....
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            68999999999999999999998864667778888877776654433                 2578999999986422


Q ss_pred             CCChhhHHHHHHHHHhhcccccEEEEEEeCC
Q 020714          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (322)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s  233 (322)
                      .-  .   ..-...+..++.+|++++|+|+.
T Consensus        83 ~g--~---Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KG--E---GLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cc--c---CcchHHHHHHHhCCEEEEEEeCC
Confidence            10  0   01234556788899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01855 YqeH YqeH

Probab=98.72  E-value=9.3e-08  Score=80.91  Aligned_cols=89  Identities=20%  Similarity=0.161  Sum_probs=57.5

Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHH---HHHHHH-hcCC--CCCcE
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL---KVAEQF-KHLP--GYERI  292 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~---~~~~~~-~~~~--~~~~~  292 (322)
                      .+..+|++++|+|+++........+    .. .   ..+.|+++|+||+|+........   .+.... ....  +..++
T Consensus        31 ~~~~ad~il~VvD~~~~~~~~~~~l----~~-~---~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (190)
T cd01855          31 ISPKKALVVHVVDIFDFPGSLIPRL----RL-F---GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDV  102 (190)
T ss_pred             cccCCcEEEEEEECccCCCccchhH----HH-h---cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccE
Confidence            4588899999999976543332222    11 1   12468999999999975432211   111001 0111  22368


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhh
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +++||++|.|+++|+++|.+.+.
T Consensus       103 ~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855         103 ILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            99999999999999999998764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.69  E-value=1.3e-06  Score=82.18  Aligned_cols=149  Identities=16%  Similarity=0.155  Sum_probs=80.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCc----------e-ee--eEEEEEe--------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNT----------T-TH--EVLGVMT--------------  183 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~----------t-~~--~~~~~~~--------------  183 (322)
                      ..+..|+++|.+||||||++..|.      +.++..+...+..          . ..  .......              
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~  177 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK  177 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence            346788999999999999998875      3344333322210          0 00  0010000              


Q ss_pred             --eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE
Q 020714          184 --KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV  261 (322)
Q Consensus       184 --~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i  261 (322)
                        ..+.++.|+||||.....     ......+.... .....+.+++|+|+..+.   +.  ....+.+....   .+.-
T Consensus       178 ~~~~~~DvViIDTaGr~~~d-----~~lm~El~~i~-~~~~p~e~lLVlda~~Gq---~a--~~~a~~F~~~~---~~~g  243 (429)
T TIGR01425       178 FKKENFDIIIVDTSGRHKQE-----DSLFEEMLQVA-EAIQPDNIIFVMDGSIGQ---AA--EAQAKAFKDSV---DVGS  243 (429)
T ss_pred             HHhCCCCEEEEECCCCCcch-----HHHHHHHHHHh-hhcCCcEEEEEeccccCh---hH--HHHHHHHHhcc---CCcE
Confidence              025689999999975321     22222233332 234568899999986432   11  22334443221   2468


Q ss_pred             EEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       262 vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      +|+||.|...............    +. |+.+++  +|++++++
T Consensus       244 ~IlTKlD~~argG~aLs~~~~t----~~-PI~fig--~Ge~v~Dl  281 (429)
T TIGR01425       244 VIITKLDGHAKGGGALSAVAAT----KS-PIIFIG--TGEHIDDF  281 (429)
T ss_pred             EEEECccCCCCccHHhhhHHHH----CC-CeEEEc--CCCChhhc
Confidence            9999999865433332222221    22 466666  56666655

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=1.2e-06  Score=74.56  Aligned_cols=128  Identities=19%  Similarity=0.276  Sum_probs=74.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeec-------CCCCcee-eeEEEEEeeCCc--cEEEEeCCCcccCCCCCCh-
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-------RKTNTTT-HEVLGVMTKADT--QICIFDTPGLMLNKSGYSH-  206 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-------~~~~~t~-~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~-  206 (322)
                      -.|+|++||.+|.|||||+|.|...++...+       +.+.|+. ......+...+.  ++.++|||||...-..... 
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            3689999999999999999999865443322       2222222 222333434444  5689999999865332110 


Q ss_pred             ----hhHHHHHHHHHhh---------c--ccccEEEEEEeCCCCCCCc-HHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714          207 ----KDVKVRVESAWSA---------V--NLFEVLMVVFDVHRHLTSP-DSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (322)
Q Consensus       207 ----~~~~~~~~~~~~~---------~--~~ad~ii~v~D~s~~~~~~-~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~  270 (322)
                          ..+.+.+.+.+..         +  ...++++|++..+.+.-.. +.+++.-|.++       +.++-|+-|+|-.
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-------vNvvPVIakaDtl  197 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-------VNVVPVIAKADTL  197 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-------heeeeeEeecccc
Confidence                1112222222221         1  4457888888887665443 23444433332       2389999999977


Q ss_pred             CC
Q 020714          271 TK  272 (322)
Q Consensus       271 ~~  272 (322)
                      .-
T Consensus       198 Tl  199 (336)
T KOG1547|consen  198 TL  199 (336)
T ss_pred             cH
Confidence            54

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.67  E-value=1.8e-07  Score=81.22  Aligned_cols=92  Identities=21%  Similarity=0.203  Sum_probs=60.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC--eeeeecCCCCceeeeEEEEEee---CCccEEEEeCCCcccCCCCCChhhHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT--KVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~--~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      ....|+|+|++++|||+|+|.|++.  .+........+|+..+......   .+..+.++||||+....... .....  
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~-~~~~~--   82 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE-FEDDA--   82 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc-hhhhh--
Confidence            3456899999999999999999998  6655555567777666544333   25789999999997554322 01111  


Q ss_pred             HHHHHhhcccccEEEEEEeCC
Q 020714          213 VESAWSAVNLFEVLMVVFDVH  233 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s  233 (322)
                      ...++..+ -++++|+..+..
T Consensus        83 ~~~~l~~l-lss~~i~n~~~~  102 (224)
T cd01851          83 RLFALATL-LSSVLIYNSWET  102 (224)
T ss_pred             HHHHHHHH-HhCEEEEeccCc
Confidence            11111111 368888888764

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01859 MJ1464 MJ1464

Probab=98.66  E-value=1.9e-07  Score=76.40  Aligned_cols=88  Identities=24%  Similarity=0.272  Sum_probs=59.4

Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      +..+|++++|+|++.+....+..+...+..   .   +.|+++|+||+|+.... ...... .+....+. +++++||++
T Consensus        10 ~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~---~---~~p~iiv~NK~Dl~~~~-~~~~~~-~~~~~~~~-~~~~iSa~~   80 (156)
T cd01859          10 IKESDVVLEVLDARDPELTRSRKLERYVLE---L---GKKLLIVLNKADLVPKE-VLEKWK-SIKESEGI-PVVYVSAKE   80 (156)
T ss_pred             HhhCCEEEEEeeCCCCcccCCHHHHHHHHh---C---CCcEEEEEEhHHhCCHH-HHHHHH-HHHHhCCC-cEEEEEccc
Confidence            356899999999976555444333333221   1   46799999999996532 222222 22222333 689999999


Q ss_pred             CCCHHHHHHHHHHHhhh
Q 020714          300 GAGLKALTQYLMEQFKD  316 (322)
Q Consensus       300 g~gi~el~~~i~~~l~~  316 (322)
                      |.|+++|++.|.+.+..
T Consensus        81 ~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          81 RLGTKILRRTIKELAKI   97 (156)
T ss_pred             cccHHHHHHHHHHHHhh
Confidence            99999999999988754

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.66  E-value=2.9e-07  Score=76.55  Aligned_cols=96  Identities=21%  Similarity=0.350  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCC
Q 020714          208 DVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP  287 (322)
Q Consensus       208 ~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~  287 (322)
                      ++.....+.+..+..+|++++|+|++.+....+..+   +..+.     ++|.++|+||+|+... .........+... 
T Consensus         5 ~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i---~~~~~-----~k~~ilVlNK~Dl~~~-~~~~~~~~~~~~~-   74 (171)
T cd01856           5 HMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLL---EKILG-----NKPRIIVLNKADLADP-KKTKKWLKYFESK-   74 (171)
T ss_pred             HHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhh---HhHhc-----CCCEEEEEehhhcCCh-HHHHHHHHHHHhc-
Confidence            356667788888999999999999976554433322   22221     3579999999999653 2222232333322 


Q ss_pred             CCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          288 GYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       288 ~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      + .+++.+||++|.|++++.+.|...+
T Consensus        75 ~-~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          75 G-EKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             C-CeEEEEECCCcccHHHHHHHHHHHH
Confidence            2 3589999999999999999998875

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.63  E-value=4.7e-07  Score=81.24  Aligned_cols=99  Identities=19%  Similarity=0.310  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714          207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL  286 (322)
Q Consensus       207 ~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~  286 (322)
                      .++....++....+..+|++++|+|+..+.+..+..+...+   .     ++|+++|+||+|+.+. .....+...+.. 
T Consensus         6 gHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l---~-----~kp~IiVlNK~DL~~~-~~~~~~~~~~~~-   75 (276)
T TIGR03596         6 GHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR---G-----NKPRLIVLNKADLADP-AVTKQWLKYFEE-   75 (276)
T ss_pred             HHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH---C-----CCCEEEEEEccccCCH-HHHHHHHHHHHH-
Confidence            34566677788889999999999999776665554443333   1     4679999999999653 223334444433 


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      .+. +++.+||++|.|+++|.+.|.+.+.+
T Consensus        76 ~~~-~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        76 KGI-KALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             cCC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            232 58999999999999999999887754

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=2.4e-07  Score=85.18  Aligned_cols=114  Identities=18%  Similarity=0.336  Sum_probs=74.9

Q ss_pred             EEEEEcCCCCchhHHHHHHh--CCeee-------------------eecCCCCceeeeEEEEEeeCCccEEEEeCCCccc
Q 020714          141 AVGIIGAPNAGKSSIINYMV--GTKVA-------------------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML  199 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~--~~~~~-------------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~  199 (322)
                      ..+|+..|.+|||||-..|+  |+.+.                   .....-|....+..-.+.+.+..+.|+||||...
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD   93 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED   93 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence            47899999999999998765  22110                   0111122223333333667788999999999987


Q ss_pred             CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      |..            .++.-+..+|..++|+|+..+...   +..++.+..+..   +.|++-.+||.|....
T Consensus        94 FSE------------DTYRtLtAvDsAvMVIDaAKGiE~---qT~KLfeVcrlR---~iPI~TFiNKlDR~~r  148 (528)
T COG4108          94 FSE------------DTYRTLTAVDSAVMVIDAAKGIEP---QTLKLFEVCRLR---DIPIFTFINKLDREGR  148 (528)
T ss_pred             cch------------hHHHHHHhhheeeEEEecccCccH---HHHHHHHHHhhc---CCceEEEeeccccccC
Confidence            632            334445566999999999765433   334444444443   6789999999998653

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.61  E-value=2.9e-06  Score=77.37  Aligned_cols=152  Identities=17%  Similarity=0.273  Sum_probs=84.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCce----------eeeEEEEE------------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT----------THEVLGVM------------------  182 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t----------~~~~~~~~------------------  182 (322)
                      ..+..++++|++|+||||++..|.+      .++.-....+...          .......+                  
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~  191 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA  191 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence            3467889999999999999887653      2332222111000          00000000                  


Q ss_pred             -eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc-----ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCC
Q 020714          183 -TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV-----NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP  256 (322)
Q Consensus       183 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~  256 (322)
                       ...+.++.|+||||......     .....+......+     ...+..++|+|++.+.    ..+.. ...+....  
T Consensus       192 ~~~~~~D~ViIDTaGr~~~~~-----~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~----~~~~~-a~~f~~~~--  259 (318)
T PRK10416        192 AKARGIDVLIIDTAGRLHNKT-----NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ----NALSQ-AKAFHEAV--  259 (318)
T ss_pred             HHhCCCCEEEEeCCCCCcCCH-----HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh----HHHHH-HHHHHhhC--
Confidence             12356899999999864322     1112222222221     3457889999996432    22222 22222111  


Q ss_pred             CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHH
Q 020714          257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ  308 (322)
Q Consensus       257 ~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~  308 (322)
                       .+.-+|+||.|..............+    +. |+.+++  +|+++++|..
T Consensus       260 -~~~giIlTKlD~t~~~G~~l~~~~~~----~~-Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        260 -GLTGIILTKLDGTAKGGVVFAIADEL----GI-PIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             -CCCEEEEECCCCCCCccHHHHHHHHH----CC-CEEEEe--CCCChhhCcc
Confidence             13579999999765544444433333    33 688998  9999988754

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=5.3e-07  Score=85.15  Aligned_cols=141  Identities=13%  Similarity=0.291  Sum_probs=89.1

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ..+.++.|+++|+||+||||||..|.......+-..+.   .+.. +......+++|+.+|.-               +.
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~---GPiT-vvsgK~RRiTflEcp~D---------------l~  125 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIR---GPIT-VVSGKTRRITFLECPSD---------------LH  125 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccC---CceE-EeecceeEEEEEeChHH---------------HH
Confidence            46678999999999999999999998754332221111   0111 12234567899999832               23


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHH-----HHhcCCCC
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE-----QFKHLPGY  289 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~-----~~~~~~~~  289 (322)
                      +..+...-||++++++|..-++.-+   .++.|.-+.....|  .++-|++..|+.....-+.....     .+...+..
T Consensus       126 ~miDvaKIaDLVlLlIdgnfGfEME---TmEFLnil~~HGmP--rvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqG  200 (1077)
T COG5192         126 QMIDVAKIADLVLLLIDGNFGFEME---TMEFLNILISHGMP--RVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQG  200 (1077)
T ss_pred             HHHhHHHhhheeEEEeccccCceeh---HHHHHHHHhhcCCC--ceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCC
Confidence            4445667789999999986544332   33444444444333  38899999999887654433333     33445555


Q ss_pred             CcEEEeecCC
Q 020714          290 ERIFMTSGLK  299 (322)
Q Consensus       290 ~~~~~iSa~~  299 (322)
                      ...|.+|...
T Consensus       201 aKlFylsgV~  210 (1077)
T COG5192         201 AKLFYLSGVE  210 (1077)
T ss_pred             ceEEEecccc
Confidence            5788888653

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.59  E-value=4.1e-07  Score=74.35  Aligned_cols=84  Identities=25%  Similarity=0.325  Sum_probs=56.8

Q ss_pred             cEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH
Q 020714          224 EVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL  303 (322)
Q Consensus       224 d~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi  303 (322)
                      |++++|+|+..+....+..+..  ..+...   ++|+++|+||+|+... .....+...+....+ ..++.+||++|.|+
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~--~~~~~~---~~p~IiVlNK~Dl~~~-~~~~~~~~~~~~~~~-~~ii~vSa~~~~gi   73 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIER--VLIKEK---GKKLILVLNKADLVPK-EVLRKWLAYLRHSYP-TIPFKISATNGQGI   73 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHH--HHHhcC---CCCEEEEEechhcCCH-HHHHHHHHHHHhhCC-ceEEEEeccCCcCh
Confidence            7899999997765554432321  222222   4689999999999754 323333334443333 35899999999999


Q ss_pred             HHHHHHHHHHh
Q 020714          304 KALTQYLMEQF  314 (322)
Q Consensus       304 ~el~~~i~~~l  314 (322)
                      +++.+.|.+..
T Consensus        74 ~~L~~~i~~~~   84 (155)
T cd01849          74 EKKESAFTKQT   84 (155)
T ss_pred             hhHHHHHHHHh
Confidence            99999997754

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.58  E-value=9.7e-08  Score=85.10  Aligned_cols=91  Identities=20%  Similarity=0.306  Sum_probs=67.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC-----------------CccEEEEeCCCccc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-----------------DTQICIFDTPGLML  199 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~l~DtpG~~~  199 (322)
                      ...++++|||.||||||||.|.|+..... .++.|.+|.++........                 ...+.+.|.+|+..
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            35679999999999999999999998766 7888888888666543221                 13578999999975


Q ss_pred             CCC-CCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714          200 NKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (322)
Q Consensus       200 ~~~-~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~  234 (322)
                      ... +.+      .-...+..++.+|.+++|+++..
T Consensus        97 GAs~G~G------LGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   97 GASAGEG------LGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             CcccCcC------chHHHHHhhhhccceeEEEEecC
Confidence            432 111      12345677899999999998753

>PRK14974 cell division protein FtsY; Provisional

Probab=98.55  E-value=9.9e-07  Score=80.80  Aligned_cols=152  Identities=18%  Similarity=0.237  Sum_probs=84.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCC----------------CceeeeEE-E------------E
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKT----------------NTTTHEVL-G------------V  181 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~----------------~~t~~~~~-~------------~  181 (322)
                      .++..++++|++|+||||++..|..      ..+..+....                +....... +            .
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~  217 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH  217 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence            3567899999999999998776642      2222222111                10000000 0            0


Q ss_pred             EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE
Q 020714          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV  261 (322)
Q Consensus       182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i  261 (322)
                      ....+.++.|+||+|.....     ......++.... ....|.+++|+|+..+.   +  .......+....   ...-
T Consensus       218 ~~~~~~DvVLIDTaGr~~~~-----~~lm~eL~~i~~-~~~pd~~iLVl~a~~g~---d--~~~~a~~f~~~~---~~~g  283 (336)
T PRK14974        218 AKARGIDVVLIDTAGRMHTD-----ANLMDELKKIVR-VTKPDLVIFVGDALAGN---D--AVEQAREFNEAV---GIDG  283 (336)
T ss_pred             HHhCCCCEEEEECCCccCCc-----HHHHHHHHHHHH-hhCCceEEEeeccccch---h--HHHHHHHHHhcC---CCCE
Confidence            01134679999999987421     222222333322 23468889999985431   1  122223332211   1258


Q ss_pred             EEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHH
Q 020714          262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQY  309 (322)
Q Consensus       262 vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~  309 (322)
                      +|+||.|...............    +. |+.+++  +|+++++|..+
T Consensus       284 iIlTKlD~~~~~G~~ls~~~~~----~~-Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        284 VILTKVDADAKGGAALSIAYVI----GK-PILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             EEEeeecCCCCccHHHHHHHHH----Cc-CEEEEe--CCCChhhcccC
Confidence            9999999976544443333332    33 688888  89999888643

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.54  E-value=1.7e-05  Score=70.87  Aligned_cols=153  Identities=16%  Similarity=0.234  Sum_probs=84.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCc-----------eeeeEEEEE-----------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNT-----------TTHEVLGVM-----------------  182 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~-----------t~~~~~~~~-----------------  182 (322)
                      ..+..++++|++|+||||++..|.      +.++.-+...+..           .........                 
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~  149 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK  149 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence            345678899999999999987664      2233222211100           000000000                 


Q ss_pred             -eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc-----ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCC
Q 020714          183 -TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV-----NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP  256 (322)
Q Consensus       183 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~  256 (322)
                       ...+.++.|+||||.....     ......+.......     ..+|.+++|+|++.+    ...+.. ...+....  
T Consensus       150 ~~~~~~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~----~~~~~~-~~~f~~~~--  217 (272)
T TIGR00064       150 AKARNIDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG----QNALEQ-AKVFNEAV--  217 (272)
T ss_pred             HHHCCCCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC----HHHHHH-HHHHHhhC--
Confidence             0245789999999986421     22222222222222     237899999999532    122222 22222111  


Q ss_pred             CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHH
Q 020714          257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQY  309 (322)
Q Consensus       257 ~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~  309 (322)
                       .+.-+|+||.|..............+    +. |+.+++  +|++++++..+
T Consensus       218 -~~~g~IlTKlDe~~~~G~~l~~~~~~----~~-Pi~~~~--~Gq~~~dl~~~  262 (272)
T TIGR00064       218 -GLTGIILTKLDGTAKGGIILSIAYEL----KL-PIKFIG--VGEKIDDLAPF  262 (272)
T ss_pred             -CCCEEEEEccCCCCCccHHHHHHHHH----Cc-CEEEEe--CCCChHhCccC
Confidence             13679999999876555444433333    33 688888  89999887543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.53  E-value=1.4e-06  Score=79.00  Aligned_cols=162  Identities=20%  Similarity=0.300  Sum_probs=95.4

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeee-------------cCCCCceeeeEEEEEee-----------------
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-------------SRKTNTTTHEVLGVMTK-----------------  184 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~-------------~~~~~~t~~~~~~~~~~-----------------  184 (322)
                      ..+..+.|+..|.-+.|||||+-.|.-.+...-             .-..|.+.+....++-+                 
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            356678999999999999999988763321100             00112222222222111                 


Q ss_pred             ------CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc--ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCC
Q 020714          185 ------ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP  256 (322)
Q Consensus       185 ------~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~  256 (322)
                            .+.-+.|+||.|.+..            ++.++.-+  ...|..++++.+.++.+....+-...+-.+      
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpw------------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~------  254 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPW------------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAM------  254 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHH------------HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhh------
Confidence                  1234679999998743            22222222  556899999998777655433222222222      


Q ss_pred             CCcEEEEEeCCCCCCChh------HHHHHHHH--------------------HhcCCCCCcEEEeecCCCCCHHHHHHHH
Q 020714          257 KQKRVLCMNKVDLVTKKK------DLLKVAEQ--------------------FKHLPGYERIFMTSGLKGAGLKALTQYL  310 (322)
Q Consensus       257 ~~p~ivV~NK~Dl~~~~~------~~~~~~~~--------------------~~~~~~~~~~~~iSa~~g~gi~el~~~i  310 (322)
                      ..|+++|+||+|+.+...      +.....+.                    ...-.+..|+|.+|+.+|+|++-|.+.+
T Consensus       255 ~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         255 ELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             cCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            467999999999987531      11111111                    1111235589999999999998777766


Q ss_pred             HHHh
Q 020714          311 MEQF  314 (322)
Q Consensus       311 ~~~l  314 (322)
                      ...=
T Consensus       335 ~~Lp  338 (527)
T COG5258         335 LLLP  338 (527)
T ss_pred             HhCC
Confidence            5443

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.52  E-value=1.5e-06  Score=82.62  Aligned_cols=162  Identities=15%  Similarity=0.123  Sum_probs=99.1

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceee-eEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH-EVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      ..++.+.+.++|+.|+|||.+++.++|+.+.. .....+... ....+...+ ..-+.+.|.+-. ......+       
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~-------  491 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTS-------  491 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccC-------
Confidence            44567899999999999999999999987655 221111111 111111122 233455555432 1111000       


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                           .+ ..||+++++||.+++.+...  .....+... .. ...|+++|++|+|+....+.....-..+...++.++.
T Consensus       492 -----ke-~~cDv~~~~YDsS~p~sf~~--~a~v~~~~~-~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P  561 (625)
T KOG1707|consen  492 -----KE-AACDVACLVYDSSNPRSFEY--LAEVYNKYF-DL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPP  561 (625)
T ss_pred             -----cc-ceeeeEEEecccCCchHHHH--HHHHHHHhh-hc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCC
Confidence                 11 56899999999986544332  222222222 22 4678999999999987654333333777777888888


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhh
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +.+|.+.... .++|..|..+..-
T Consensus       562 ~~~S~~~~~s-~~lf~kL~~~A~~  584 (625)
T KOG1707|consen  562 IHISSKTLSS-NELFIKLATMAQY  584 (625)
T ss_pred             eeeccCCCCC-chHHHHHHHhhhC
Confidence            9999985222 8888888876654

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.50  E-value=7.8e-07  Score=71.50  Aligned_cols=82  Identities=26%  Similarity=0.419  Sum_probs=58.0

Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                      ..++..+..+|++++|+|+..+.+..+..+..++....    .++|+++|+||+|+... .........+... + .+++
T Consensus         3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~----~~k~~iivlNK~DL~~~-~~~~~~~~~~~~~-~-~~ii   75 (141)
T cd01857           3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD----PRKKNILLLNKADLLTE-EQRKAWAEYFKKE-G-IVVV   75 (141)
T ss_pred             HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc----CCCcEEEEEechhcCCH-HHHHHHHHHHHhc-C-CeEE
Confidence            45566788899999999998877766666667766542    25689999999999753 2333334444433 3 3689


Q ss_pred             EeecCCCCC
Q 020714          294 MTSGLKGAG  302 (322)
Q Consensus       294 ~iSa~~g~g  302 (322)
                      ++||++|.+
T Consensus        76 ~iSa~~~~~   84 (141)
T cd01857          76 FFSALKENA   84 (141)
T ss_pred             EEEecCCCc
Confidence            999998864

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.50  E-value=1.4e-06  Score=78.67  Aligned_cols=99  Identities=23%  Similarity=0.346  Sum_probs=71.0

Q ss_pred             hhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714          207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL  286 (322)
Q Consensus       207 ~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~  286 (322)
                      .++....++....+..+|++++|+|+..+.+..+..+...+   .     ++|+++|+||+|+.+. .....+...+...
T Consensus         9 gHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~---~-----~kp~iiVlNK~DL~~~-~~~~~~~~~~~~~   79 (287)
T PRK09563          9 GHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKII---G-----NKPRLLILNKSDLADP-EVTKKWIEYFEEQ   79 (287)
T ss_pred             HHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh---C-----CCCEEEEEEchhcCCH-HHHHHHHHHHHHc
Confidence            44566778888889999999999999776655543333322   1     4679999999999653 2233444444322


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                       + .+++.+||+++.|++++.+.|...+..
T Consensus        80 -~-~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         80 -G-IKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             -C-CeEEEEECCCcccHHHHHHHHHHHHHH
Confidence             2 358999999999999999999887754

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.46  E-value=3.7e-06  Score=74.72  Aligned_cols=61  Identities=15%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             CcEEEEEeCCCCCCC-------hh----HHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          258 QKRVLCMNKVDLVTK-------KK----DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       258 ~p~ivV~NK~Dl~~~-------~~----~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      +|+++|.+|||.+.-       +.    -+...++.|+-.+|.. .|++|+|...||+-|..+|.+..+...+
T Consensus       223 i~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa-LiyTSvKE~KNidllyKYivhr~yG~~f  294 (473)
T KOG3905|consen  223 IPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA-LIYTSVKETKNIDLLYKYIVHRSYGFPF  294 (473)
T ss_pred             CcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce-eEEeecccccchHHHHHHHHHHhcCccc
Confidence            789999999998531       11    1334567777778874 8999999999999999999998875443

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.45  E-value=7.6e-06  Score=75.88  Aligned_cols=152  Identities=14%  Similarity=0.253  Sum_probs=78.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC--------eeeeecCCC----------------CceeeeEEE-------EEeeC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT--------KVAAVSRKT----------------NTTTHEVLG-------VMTKA  185 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~--------~~~~~~~~~----------------~~t~~~~~~-------~~~~~  185 (322)
                      ..+-.++|+|++||||||++..|...        .+..+....                +........       .....
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~  214 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR  214 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence            44668899999999999999887532        121111111                110000000       00113


Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCC----CcE
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPK----QKR  260 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~----~p~  260 (322)
                      +..+.|+||+|......     ...+.+. .+.....+.-.++|+++..+.    ..+...+..+.... .+.    ...
T Consensus       215 ~~DlVLIDTaG~~~~d~-----~l~e~La-~L~~~~~~~~~lLVLsAts~~----~~l~evi~~f~~~~~~p~~~~~~~~  284 (374)
T PRK14722        215 NKHMVLIDTIGMSQRDR-----TVSDQIA-MLHGADTPVQRLLLLNATSHG----DTLNEVVQAYRSAAGQPKAALPDLA  284 (374)
T ss_pred             CCCEEEEcCCCCCcccH-----HHHHHHH-HHhccCCCCeEEEEecCccCh----HHHHHHHHHHHHhhcccccccCCCC
Confidence            56899999999864321     1122222 222334445678899985432    22333333333211 000    124


Q ss_pred             EEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHH
Q 020714          261 VLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA  305 (322)
Q Consensus       261 ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~e  305 (322)
                      =+|+||.|....-..........    +. |+.+++  +|++|.+
T Consensus       285 ~~I~TKlDEt~~~G~~l~~~~~~----~l-Pi~yvt--~Gq~VPe  322 (374)
T PRK14722        285 GCILTKLDEASNLGGVLDTVIRY----KL-PVHYVS--TGQKVPE  322 (374)
T ss_pred             EEEEeccccCCCccHHHHHHHHH----Cc-CeEEEe--cCCCCCc
Confidence            68899999876544443333332    23 577776  6776654

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=1.8e-06  Score=83.10  Aligned_cols=118  Identities=21%  Similarity=0.347  Sum_probs=74.6

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecC----------------CCCceeee--EEEEEee---CCccEEEEe
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR----------------KTNTTTHE--VLGVMTK---ADTQICIFD  193 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~----------------~~~~t~~~--~~~~~~~---~~~~~~l~D  193 (322)
                      ......+|+++|.-..|||+|+..|.....+....                .-|.+...  ....+..   ...-+.++|
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            34567789999999999999999997643322110                01111111  1111111   134568999


Q ss_pred             CCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714          194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (322)
Q Consensus       194 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~  270 (322)
                      |||...+..            .+...++.+|++++|+|+..+.....+.   .++.....   +.|+++|+||+|..
T Consensus       204 TPGHVnF~D------------E~ta~l~~sDgvVlvvDv~EGVmlntEr---~ikhaiq~---~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  204 TPGHVNFSD------------ETTASLRLSDGVVLVVDVAEGVMLNTER---IIKHAIQN---RLPIVVVINKVDRL  262 (971)
T ss_pred             CCCcccchH------------HHHHHhhhcceEEEEEEcccCceeeHHH---HHHHHHhc---cCcEEEEEehhHHH
Confidence            999987632            2224466779999999998776655443   33333333   56799999999975

>smart00275 G_alpha G protein alpha subunit

Probab=98.40  E-value=6.7e-06  Score=75.94  Aligned_cols=125  Identities=14%  Similarity=0.153  Sum_probs=75.4

Q ss_pred             eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC--------CCcHHHHHHHHHHhc-cc
Q 020714          183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL--------TSPDSRVIRLIERMG-KQ  253 (322)
Q Consensus       183 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~--------~~~~~~~~~~l~~~~-~~  253 (322)
                      ...+..+.+||.+|.....            +.+...+..++++++|+|.++-.        ..........++.+- ..
T Consensus       180 ~~~~~~~~~~DvgGqr~~R------------~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~  247 (342)
T smart00275      180 IVKKLFFRMFDVGGQRSER------------KKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR  247 (342)
T ss_pred             EECCeEEEEEecCCchhhh------------hhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence            3456678899999985321            12234567889999999997521        111112223333332 33


Q ss_pred             CCCCCcEEEEEeCCCCCCCh----------------hH----HHHHHHHHhcCCC-----CCcEEEeecCCCCCHHHHHH
Q 020714          254 APPKQKRVLCMNKVDLVTKK----------------KD----LLKVAEQFKHLPG-----YERIFMTSGLKGAGLKALTQ  308 (322)
Q Consensus       254 ~~~~~p~ivV~NK~Dl~~~~----------------~~----~~~~~~~~~~~~~-----~~~~~~iSa~~g~gi~el~~  308 (322)
                      ...+.|+++++||.|+....                .+    ..-+...|.....     ..-+..++|..-.++..+|+
T Consensus       248 ~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~  327 (342)
T smart00275      248 WFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFD  327 (342)
T ss_pred             cccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHH
Confidence            44568999999999986321                01    1112233332221     12346788999999999999


Q ss_pred             HHHHHhhhcCC
Q 020714          309 YLMEQFKDLGL  319 (322)
Q Consensus       309 ~i~~~l~~~~~  319 (322)
                      .+.+.+....+
T Consensus       328 ~v~~~I~~~~l  338 (342)
T smart00275      328 AVKDIILQRNL  338 (342)
T ss_pred             HHHHHHHHHHH
Confidence            98888876543

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK00098 GTPase RsgA; Reviewed

Probab=98.37  E-value=2.4e-06  Score=77.48  Aligned_cols=86  Identities=20%  Similarity=0.318  Sum_probs=59.0

Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      +.++|.+++|+|+.++... ...+..++..+...   +.|.++|+||+|+.............+.. .+. +++++||++
T Consensus        78 aaniD~vllV~d~~~p~~~-~~~idr~L~~~~~~---~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-~g~-~v~~vSA~~  151 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFS-TDLLDRFLVLAEAN---GIKPIIVLNKIDLLDDLEEARELLALYRA-IGY-DVLELSAKE  151 (298)
T ss_pred             eecCCEEEEEEECCCCCCC-HHHHHHHHHHHHHC---CCCEEEEEEhHHcCCCHHHHHHHHHHHHH-CCC-eEEEEeCCC
Confidence            5788999999999654332 22334555554433   56799999999997443333333333322 344 699999999


Q ss_pred             CCCHHHHHHHHH
Q 020714          300 GAGLKALTQYLM  311 (322)
Q Consensus       300 g~gi~el~~~i~  311 (322)
                      |.|+++|++.|.
T Consensus       152 g~gi~~L~~~l~  163 (298)
T PRK00098        152 GEGLDELKPLLA  163 (298)
T ss_pred             CccHHHHHhhcc
Confidence            999999998874

>PRK12289 GTPase RsgA; Reviewed

Probab=98.37  E-value=2.4e-06  Score=78.92  Aligned_cols=87  Identities=24%  Similarity=0.367  Sum_probs=60.3

Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      +.++|.+++|+|+.++. .....+..++.....   .+.|+++|+||+|+.... ....+...+. ..++ +++++||++
T Consensus        87 ~aNvD~vLlV~d~~~p~-~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~-~~~~~~~~~~-~~g~-~v~~iSA~t  159 (352)
T PRK12289         87 VANADQILLVFALAEPP-LDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPT-EQQQWQDRLQ-QWGY-QPLFISVET  159 (352)
T ss_pred             hhcCCEEEEEEECCCCC-CCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChH-HHHHHHHHHH-hcCC-eEEEEEcCC
Confidence            57789999999997543 222234455554433   257799999999997542 2333444443 3455 589999999


Q ss_pred             CCCHHHHHHHHHHH
Q 020714          300 GAGLKALTQYLMEQ  313 (322)
Q Consensus       300 g~gi~el~~~i~~~  313 (322)
                      |.|+++|++.|...
T Consensus       160 g~GI~eL~~~L~~k  173 (352)
T PRK12289        160 GIGLEALLEQLRNK  173 (352)
T ss_pred             CCCHHHHhhhhccc
Confidence            99999999988653

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.37  E-value=3.9e-06  Score=78.15  Aligned_cols=93  Identities=18%  Similarity=0.211  Sum_probs=60.5

Q ss_pred             HHHHHhhc-ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcCCC
Q 020714          213 VESAWSAV-NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPG  288 (322)
Q Consensus       213 ~~~~~~~~-~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~~~  288 (322)
                      +...+..+ ..++++++|+|+.+......    ..+....    .+.|+++|+||+|+.+...   ....+........+
T Consensus        53 f~~~l~~~~~~~~~Il~VvD~~d~~~s~~----~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g  124 (360)
T TIGR03597        53 FLNLLNSLGDSNALIVYVVDIFDFEGSLI----PELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG  124 (360)
T ss_pred             HHHHHhhcccCCcEEEEEEECcCCCCCcc----HHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence            44444444 67789999999965443332    2222221    1467999999999976432   23333333333344


Q ss_pred             C--CcEEEeecCCCCCHHHHHHHHHHH
Q 020714          289 Y--ERIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       289 ~--~~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      .  ..++.+||++|.|++++++.|.+.
T Consensus       125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       125 LKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            4  258999999999999999999765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.37  E-value=1.1e-06  Score=74.68  Aligned_cols=100  Identities=15%  Similarity=0.177  Sum_probs=56.1

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      +.++.|+||||.....     ......+...+... ..+-+++|++++.+    ...+...........    +.=+|+|
T Consensus        83 ~~D~vlIDT~Gr~~~d-----~~~~~el~~~~~~~-~~~~~~LVlsa~~~----~~~~~~~~~~~~~~~----~~~lIlT  148 (196)
T PF00448_consen   83 GYDLVLIDTAGRSPRD-----EELLEELKKLLEAL-NPDEVHLVLSATMG----QEDLEQALAFYEAFG----IDGLILT  148 (196)
T ss_dssp             TSSEEEEEE-SSSSTH-----HHHHHHHHHHHHHH-SSSEEEEEEEGGGG----GHHHHHHHHHHHHSS----TCEEEEE
T ss_pred             CCCEEEEecCCcchhh-----HHHHHHHHHHhhhc-CCccceEEEecccC----hHHHHHHHHHhhccc----CceEEEE
Confidence            4679999999986321     22233344444444 55788999998543    222322222222111    2467799


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      |.|....-..........    +. |+-++|  +|++|+++
T Consensus       149 KlDet~~~G~~l~~~~~~----~~-Pi~~it--~Gq~V~Dl  182 (196)
T PF00448_consen  149 KLDETARLGALLSLAYES----GL-PISYIT--TGQRVDDL  182 (196)
T ss_dssp             STTSSSTTHHHHHHHHHH----TS-EEEEEE--SSSSTTGE
T ss_pred             eecCCCCcccceeHHHHh----CC-CeEEEE--CCCChhcC
Confidence            999876655444433332    22 577777  77777554

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.37  E-value=3.4e-06  Score=80.54  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=48.9

Q ss_pred             CcEEEEEeCCCCCCC--------h---hHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714          258 QKRVLCMNKVDLVTK--------K---KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLK  320 (322)
Q Consensus       258 ~p~ivV~NK~Dl~~~--------~---~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~  320 (322)
                      +|++||.+|+|....        +   .-+.+.++.++-.+|.. .|++|++...+++.|+.+|.+.++...++
T Consensus       197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAs-L~yts~~~~~n~~~L~~yi~h~l~~~~f~  269 (472)
T PF05783_consen  197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGAS-LIYTSVKEEKNLDLLYKYILHRLYGFPFK  269 (472)
T ss_pred             cceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCe-EEEeeccccccHHHHHHHHHHHhccCCCC
Confidence            799999999997631        1   12345567777778875 89999999999999999999998875544

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.37  E-value=4.5e-06  Score=76.03  Aligned_cols=153  Identities=22%  Similarity=0.251  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC----eee-------eecCCC-C----c---eeeeEEEE--Ee---------------e
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT----KVA-------AVSRKT-N----T---TTHEVLGV--MT---------------K  184 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~----~~~-------~~~~~~-~----~---t~~~~~~~--~~---------------~  184 (322)
                      ..++.|+=|+|||||||.++..    +++       .++-.. .    +   ......+.  +.               .
T Consensus         3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~   82 (323)
T COG0523           3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR   82 (323)
T ss_pred             EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence            3568899999999999998742    222       122110 0    0   00111111  11               2


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHH--HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVES--AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL  262 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~iv  262 (322)
                      ++.+..++.|-|+-.+.+      ....+..  .+...-.-|.++-|+|+.+-.............++...      .++
T Consensus        83 ~~~D~ivIEtTGlA~P~p------v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~i  150 (323)
T COG0523          83 DRPDRLVIETTGLADPAP------VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVI  150 (323)
T ss_pred             CCCCEEEEeCCCCCCCHH------HHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEE
Confidence            345678999999876522      2222221  22233445889999999653322221112223333333      699


Q ss_pred             EEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHH
Q 020714          263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT  307 (322)
Q Consensus       263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~  307 (322)
                      |+||+|+..... .......+.+.++..+++.+|. .+.+..+++
T Consensus       151 vlNK~Dlv~~~~-l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         151 VLNKTDLVDAEE-LEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             EEecccCCCHHH-HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            999999998764 6677778888888888998887 444554444

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=1.4e-06  Score=84.83  Aligned_cols=113  Identities=24%  Similarity=0.265  Sum_probs=71.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCC---------------CCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK---------------TNTTTHEVLGVMTKADTQICIFDTPGLMLNKS  202 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~---------------~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~  202 (322)
                      +.-+++++..-.-|||||+..|....-...+..               -|.|...........+..+.++|+||..+|..
T Consensus         8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s   87 (887)
T KOG0467|consen    8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS   87 (887)
T ss_pred             ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence            455788888889999999999874332211111               23333322222334677889999999998754


Q ss_pred             CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q 020714          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD  268 (322)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~D  268 (322)
                      ...            .....+|+.++++|+-.+...+...+   ++.....   +...++|+||+|
T Consensus        88 evs------------sas~l~d~alvlvdvvegv~~qt~~v---lrq~~~~---~~~~~lvinkid  135 (887)
T KOG0467|consen   88 EVS------------SASRLSDGALVLVDVVEGVCSQTYAV---LRQAWIE---GLKPILVINKID  135 (887)
T ss_pred             hhh------------hhhhhcCCcEEEEeeccccchhHHHH---HHHHHHc---cCceEEEEehhh
Confidence            221            22355799999999976665554433   3333322   234899999999

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.36  E-value=6e-07  Score=69.84  Aligned_cols=115  Identities=15%  Similarity=0.077  Sum_probs=65.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      ++++++|..|||||+|+.++....+.... .. .|..            +..+|        .               ..
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~-~~-~t~~------------~~~~~--------~---------------~~   43 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVP-TV-FTIG------------IDVYD--------P---------------TS   43 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccC-ce-ehhh------------hhhcc--------c---------------cc
Confidence            47999999999999999999655432110 00 0100            11111        0               12


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      ...++.++.+++.....+...  .  |...+......+.|.++++||.|+........+    ..     .+++++|+++
T Consensus        44 ~~s~~~~~~v~~~~~~~s~~~--~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~----~~-----~~~~~~s~~~  110 (124)
T smart00010       44 YESFDVVLQCWRVDDRDSADN--K--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATE----EG-----LEFAETSAKT  110 (124)
T ss_pred             cCCCCEEEEEEEccCHHHHHH--H--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHH----HH-----HHHHHHhCCC
Confidence            345588888888855333211  1  333333333345778999999998432211111    11     1356789999


Q ss_pred             CCCHH
Q 020714          300 GAGLK  304 (322)
Q Consensus       300 g~gi~  304 (322)
                      |.|+.
T Consensus       111 ~~~~~  115 (124)
T smart00010      111 PEEGE  115 (124)
T ss_pred             cchhh
Confidence            99984

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd00066 G-alpha G protein alpha subunit

Probab=98.34  E-value=1.1e-05  Score=73.93  Aligned_cols=126  Identities=14%  Similarity=0.155  Sum_probs=75.4

Q ss_pred             EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC--------CCcHHHHHHHHHHhc-c
Q 020714          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL--------TSPDSRVIRLIERMG-K  252 (322)
Q Consensus       182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~--------~~~~~~~~~~l~~~~-~  252 (322)
                      +...+..+.+||++|.....            ......+..++++++|+|.++-.        ...-......++.+- .
T Consensus       156 f~~~~~~~~~~DvgGq~~~R------------~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~  223 (317)
T cd00066         156 FTIKNLKFRMFDVGGQRSER------------KKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS  223 (317)
T ss_pred             EEecceEEEEECCCCCcccc------------hhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence            33456778899999986422            12334567889999999997521        011112223333332 2


Q ss_pred             cCCCCCcEEEEEeCCCCCCCh-----------------hHHH----HHHHHHhcCCC----CCcEEEeecCCCCCHHHHH
Q 020714          253 QAPPKQKRVLCMNKVDLVTKK-----------------KDLL----KVAEQFKHLPG----YERIFMTSGLKGAGLKALT  307 (322)
Q Consensus       253 ~~~~~~p~ivV~NK~Dl~~~~-----------------~~~~----~~~~~~~~~~~----~~~~~~iSa~~g~gi~el~  307 (322)
                      ....+.|+++++||.|+....                 ...+    -+...|.....    ..-+..++|..-.++..+|
T Consensus       224 ~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf  303 (317)
T cd00066         224 RWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVF  303 (317)
T ss_pred             ccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHH
Confidence            333568999999999965310                 1111    12233332221    1124668999999999999


Q ss_pred             HHHHHHhhhcCC
Q 020714          308 QYLMEQFKDLGL  319 (322)
Q Consensus       308 ~~i~~~l~~~~~  319 (322)
                      +.+.+.+....+
T Consensus       304 ~~v~~~i~~~~l  315 (317)
T cd00066         304 DAVKDIILQNNL  315 (317)
T ss_pred             HHHHHHHHHHHh
Confidence            999988877654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.32  E-value=8.5e-06  Score=75.43  Aligned_cols=148  Identities=16%  Similarity=0.232  Sum_probs=81.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCc--------e----ee-eEEEEE------------e-eC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT--------T----TH-EVLGVM------------T-KA  185 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~--------t----~~-~~~~~~------------~-~~  185 (322)
                      .+..|+++|++||||||++..|..      .++..+...+..        +    .. ......            . ..
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            346899999999999999988752      122222211110        0    00 000000            0 01


Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      +.++.|+||||.....     ......+...+.. ...+.+++|+|++..    ...+...++.+....    ..=+|+|
T Consensus       320 ~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~-~~PdevlLVLsATtk----~~d~~~i~~~F~~~~----idglI~T  385 (436)
T PRK11889        320 RVDYILIDTAGKNYRA-----SETVEEMIETMGQ-VEPDYICLTLSASMK----SKDMIEIITNFKDIH----IDGIVFT  385 (436)
T ss_pred             CCCEEEEeCccccCcC-----HHHHHHHHHHHhh-cCCCeEEEEECCccC----hHHHHHHHHHhcCCC----CCEEEEE
Confidence            4689999999986421     1212223333332 234678888987432    233455666665422    2578999


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      |.|...............    +. |+.+++  +|+++.+=
T Consensus       386 KLDET~k~G~iLni~~~~----~l-PIsyit--~GQ~VPeD  419 (436)
T PRK11889        386 KFDETASSGELLKIPAVS----SA-PIVLMT--DGQDVKKN  419 (436)
T ss_pred             cccCCCCccHHHHHHHHH----Cc-CEEEEe--CCCCCCcc
Confidence            999876555544434333    33 577776  67776543

>PRK13796 GTPase YqeH; Provisional

Probab=98.31  E-value=6.9e-06  Score=76.57  Aligned_cols=95  Identities=19%  Similarity=0.187  Sum_probs=63.9

Q ss_pred             HHHHHHhhccccc-EEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh---hHHHHHHHHHhcCC
Q 020714          212 RVESAWSAVNLFE-VLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLKVAEQFKHLP  287 (322)
Q Consensus       212 ~~~~~~~~~~~ad-~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~---~~~~~~~~~~~~~~  287 (322)
                      .+...+..+...+ ++++|+|+.+....    +...+..+..    +.|+++|+||+|+.+..   .....+...+....
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~s----~~~~L~~~~~----~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFNGS----WIPGLHRFVG----NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCCCc----hhHHHHHHhC----CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence            4566777777666 99999999653322    2233333321    45799999999997532   22333444444444


Q ss_pred             CC--CcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          288 GY--ERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       288 ~~--~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      +.  ..++.+||++|.|++++++.|.+..
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            43  2589999999999999999997754

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.30  E-value=1.5e-05  Score=75.08  Aligned_cols=149  Identities=11%  Similarity=0.161  Sum_probs=81.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe--------eeeecCC----------------CCceeeeEEE-------EEeeCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK--------VAAVSRK----------------TNTTTHEVLG-------VMTKAD  186 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~--------~~~~~~~----------------~~~t~~~~~~-------~~~~~~  186 (322)
                      .+-+++++|++|+||||++..|.+..        ...+...                .|........       .....+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            45689999999999999998775421        1100000                0100000000       011235


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK  266 (322)
                      ..+.++||+|.....     ......+.. +.......-.++|+|++.    ....+...+..+....    ..=+|+||
T Consensus       270 ~d~VLIDTaGrsqrd-----~~~~~~l~~-l~~~~~~~~~~LVl~at~----~~~~~~~~~~~f~~~~----~~~~I~TK  335 (420)
T PRK14721        270 KHMVLIDTVGMSQRD-----QMLAEQIAM-LSQCGTQVKHLLLLNATS----SGDTLDEVISAYQGHG----IHGCIITK  335 (420)
T ss_pred             CCEEEecCCCCCcch-----HHHHHHHHH-HhccCCCceEEEEEcCCC----CHHHHHHHHHHhcCCC----CCEEEEEe
Confidence            678999999987431     112222222 222233456778898853    2344555666665332    25689999


Q ss_pred             CCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH-HHHH
Q 020714          267 VDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KALT  307 (322)
Q Consensus       267 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi-~el~  307 (322)
                      .|....-..........    +. |+.+++  +|++| +++.
T Consensus       336 lDEt~~~G~~l~~~~~~----~l-Pi~yvt--~Gq~VP~Dl~  370 (420)
T PRK14721        336 VDEAASLGIALDAVIRR----KL-VLHYVT--NGQKVPEDLH  370 (420)
T ss_pred             eeCCCCccHHHHHHHHh----CC-CEEEEE--CCCCchhhhh
Confidence            99876544443333332    33 577777  78888 5554

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.30  E-value=6.4e-06  Score=67.58  Aligned_cols=71  Identities=14%  Similarity=0.178  Sum_probs=41.7

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHH--HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVR--VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~--~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ..+..++||||+..+.      .....  ....+...-..|.+++++|+..-.... .....+...+...      .++|
T Consensus        86 ~~d~I~IEt~G~~~p~------~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~-~~~~~~~~Qi~~a------d~iv  152 (158)
T cd03112          86 AFDRIVIETTGLADPG------PVAQTFFMDEELAERYLLDGVITLVDAKHANQHL-DQQTEAQSQIAFA------DRIL  152 (158)
T ss_pred             CCCEEEEECCCcCCHH------HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHh-hccHHHHHHHHHC------CEEE
Confidence            4577899999997542      22221  123445566779999999985321111 0111233444433      5889


Q ss_pred             EeCCCC
Q 020714          264 MNKVDL  269 (322)
Q Consensus       264 ~NK~Dl  269 (322)
                      +||+|+
T Consensus       153 lnk~dl  158 (158)
T cd03112         153 LNKTDL  158 (158)
T ss_pred             EecccC
Confidence            999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=1.2e-05  Score=72.01  Aligned_cols=161  Identities=18%  Similarity=0.235  Sum_probs=105.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC----------Ceeeeec-----CCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG----------TKVAAVS-----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~----------~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~  201 (322)
                      +..++|+-+|.-.-|||||-.+++.          .++.+..     ..-|.|..............+-=.|+||.-+  
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD--  129 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD--  129 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH--
Confidence            4568999999999999999887753          1122222     2235665555544444556667799999753  


Q ss_pred             CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH---HH
Q 020714          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LK  278 (322)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~---~~  278 (322)
                                .++..+.-....|+.|+|+.+.++.-.+..+-.-+-+.++..     .+++.+||.|++++.+..   +.
T Consensus       130 ----------YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~-----~ivvfiNKvD~V~d~e~leLVEm  194 (449)
T KOG0460|consen  130 ----------YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVK-----HIVVFINKVDLVDDPEMLELVEM  194 (449)
T ss_pred             ----------HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCc-----eEEEEEecccccCCHHHHHHHHH
Confidence                      466666667778999999999988777666555566666653     389999999999765433   23


Q ss_pred             HHHHHhcCCCC----CcEEEeec---CCCCC-------HHHHHHHHHHHh
Q 020714          279 VAEQFKHLPGY----ERIFMTSG---LKGAG-------LKALTQYLMEQF  314 (322)
Q Consensus       279 ~~~~~~~~~~~----~~~~~iSa---~~g~g-------i~el~~~i~~~l  314 (322)
                      +++++...+++    .|++.=||   +.|.+       |.+|++++...+
T Consensus       195 E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi  244 (449)
T KOG0460|consen  195 EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI  244 (449)
T ss_pred             HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence            34455444554    36776555   45532       555555555544

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.26  E-value=1.5e-05  Score=73.71  Aligned_cols=146  Identities=14%  Similarity=0.160  Sum_probs=81.0

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCee--eeecCCCCceeeeEEE-------------------E----------EeeCCc
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLG-------------------V----------MTKADT  187 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~--~~~~~~~~~t~~~~~~-------------------~----------~~~~~~  187 (322)
                      +-.|++||++||||||.+-.|.....  .......-.|.++...                   .          .....+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            56789999999999999877653222  0000000011111110                   0          011346


Q ss_pred             cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV  267 (322)
Q Consensus       188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~  267 (322)
                      ++.|+||.|......    .. ...+...... ....-+.+|+++    +.....+...+..+.....    .-+++||.
T Consensus       283 d~ILVDTaGrs~~D~----~~-i~el~~~~~~-~~~i~~~Lvlsa----t~K~~dlkei~~~f~~~~i----~~~I~TKl  348 (407)
T COG1419         283 DVILVDTAGRSQYDK----EK-IEELKELIDV-SHSIEVYLVLSA----TTKYEDLKEIIKQFSLFPI----DGLIFTKL  348 (407)
T ss_pred             CEEEEeCCCCCccCH----HH-HHHHHHHHhc-cccceEEEEEec----CcchHHHHHHHHHhccCCc----ceeEEEcc
Confidence            899999999875432    11 1223333222 244556777877    3344567777777775433    46889999


Q ss_pred             CCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHH
Q 020714          268 DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA  305 (322)
Q Consensus       268 Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~e  305 (322)
                      |....-..+-....+.    +. |+-+++  +|++|.+
T Consensus       349 DET~s~G~~~s~~~e~----~~-PV~YvT--~GQ~VPe  379 (407)
T COG1419         349 DETTSLGNLFSLMYET----RL-PVSYVT--NGQRVPE  379 (407)
T ss_pred             cccCchhHHHHHHHHh----CC-CeEEEe--CCCCCCc
Confidence            9876544443333332    22 466665  6776643

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=1.6e-05  Score=76.98  Aligned_cols=122  Identities=24%  Similarity=0.385  Sum_probs=68.3

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee------------ecCC---------CC----------------------
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA------------VSRK---------TN----------------------  172 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~------------~~~~---------~~----------------------  172 (322)
                      .+...||+|.|.+++||||++|+++..++..            +...         ++                      
T Consensus       106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~  185 (749)
T KOG0448|consen  106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD  185 (749)
T ss_pred             hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence            4567899999999999999999987533221            1110         01                      


Q ss_pred             ceeeeEEEEEeeCC------ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHH
Q 020714          173 TTTHEVLGVMTKAD------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL  246 (322)
Q Consensus       173 ~t~~~~~~~~~~~~------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~  246 (322)
                      ........++-..+      .++.++|.||+.....      ....+.   .....+|++|+|..+.+..+..+..   .
T Consensus       186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se------~tswid---~~cldaDVfVlV~NaEntlt~sek~---F  253 (749)
T KOG0448|consen  186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE------LTSWID---SFCLDADVFVLVVNAENTLTLSEKQ---F  253 (749)
T ss_pred             cCcceEEEEEecCccchhhhccceeccCCCCCCchh------hhHHHH---HHhhcCCeEEEEecCccHhHHHHHH---H
Confidence            00001111111111      3678999999864321      111111   2346779999999986544443322   2


Q ss_pred             HHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          247 IERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       247 l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      +......   ...+.++-||.|....
T Consensus       254 f~~vs~~---KpniFIlnnkwDasas  276 (749)
T KOG0448|consen  254 FHKVSEE---KPNIFILNNKWDASAS  276 (749)
T ss_pred             HHHhhcc---CCcEEEEechhhhhcc
Confidence            2222222   1227788888898765

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.25  E-value=8.4e-07  Score=74.29  Aligned_cols=139  Identities=19%  Similarity=0.282  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCchhHHHHHHh-----CCeeeeecCCCCc-ee-------e-eEEEEE---------------------eeC
Q 020714          141 AVGIIGAPNAGKSSIINYMV-----GTKVAAVSRKTNT-TT-------H-EVLGVM---------------------TKA  185 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~-----~~~~~~~~~~~~~-t~-------~-~~~~~~---------------------~~~  185 (322)
                      .+++.|+.|+||||||+.++     +.+.+......|. ..       . .....+                     ...
T Consensus         2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~   81 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY   81 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence            46799999999999999988     2333333332320 00       0 001100                     112


Q ss_pred             --CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          186 --DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       186 --~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                        ..+..++.+.|...+..      ... ....+...-..+.++.|+|+..- .........+...+...      .++|
T Consensus        82 ~~~~d~IiIE~sG~a~p~~------l~~-~~~~~~~~~~~~~iI~vVDa~~~-~~~~~~~~~~~~Qi~~A------DvIv  147 (178)
T PF02492_consen   82 EERPDRIIIETSGLADPAP------LIL-QDPPLKEDFRLDSIITVVDATNF-DELENIPELLREQIAFA------DVIV  147 (178)
T ss_dssp             HGC-SEEEEEEECSSGGGG------HHH-HSHHHHHHESESEEEEEEEGTTH-GGHTTHCHHHHHHHCT-------SEEE
T ss_pred             CCCcCEEEECCccccccch------hhh-ccccccccccccceeEEeccccc-cccccchhhhhhcchhc------CEEE
Confidence              35778899999765432      111 12233334455899999999542 11111122234444443      6999


Q ss_pred             EeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       264 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                      +||+|+.+.....+...+.+.+.++..+++
T Consensus       148 lnK~D~~~~~~~i~~~~~~ir~lnp~a~Iv  177 (178)
T PF02492_consen  148 LNKIDLVSDEQKIERVREMIRELNPKAPIV  177 (178)
T ss_dssp             EE-GGGHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred             EeccccCChhhHHHHHHHHHHHHCCCCEEe
Confidence            999999876533455566666666655554

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.25  E-value=5.9e-06  Score=74.52  Aligned_cols=87  Identities=18%  Similarity=0.272  Sum_probs=58.9

Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .+.++|.+++|+|+..+.. ....+..++..+...   +.|.++|+||+|+...... ....... ...+. +++++||+
T Consensus        75 i~anvD~vllV~d~~~p~~-s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~~-~~~~~~~-~~~g~-~v~~vSA~  147 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFF-NPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEEE-ELELVEA-LALGY-PVLAVSAK  147 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCC-CHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHHH-HHHHHHH-HhCCC-eEEEEECC
Confidence            3678899999999976541 122344555554433   4679999999999765221 1212222 22344 69999999


Q ss_pred             CCCCHHHHHHHHHH
Q 020714          299 KGAGLKALTQYLME  312 (322)
Q Consensus       299 ~g~gi~el~~~i~~  312 (322)
                      +|.|+++|+.+|..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.21  E-value=8.1e-05  Score=68.78  Aligned_cols=147  Identities=14%  Similarity=0.204  Sum_probs=79.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCce------------ee-eEEEEEe-------------eC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT------------TH-EVLGVMT-------------KA  185 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t------------~~-~~~~~~~-------------~~  185 (322)
                      .+-.++++|++||||||++..|..      .++..+...+...            .. .......             ..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            456789999999999999987652      2232222211100            00 0000000             02


Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      +.++.|+||||.....     ......+....... ..+.+++|+++.    .....+...+..+...    .+.-+|+|
T Consensus       285 ~~D~VLIDTAGr~~~d-----~~~l~EL~~l~~~~-~p~~~~LVLsag----~~~~d~~~i~~~f~~l----~i~glI~T  350 (407)
T PRK12726        285 CVDHILIDTVGRNYLA-----EESVSEISAYTDVV-HPDLTCFTFSSG----MKSADVMTILPKLAEI----PIDGFIIT  350 (407)
T ss_pred             CCCEEEEECCCCCccC-----HHHHHHHHHHhhcc-CCceEEEECCCc----ccHHHHHHHHHhcCcC----CCCEEEEE
Confidence            4689999999986421     22222233333222 346677777662    2223344555554432    13578899


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHH
Q 020714          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA  305 (322)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~e  305 (322)
                      |.|....-..........    +. |+.++|  +|++|.+
T Consensus       351 KLDET~~~G~~Lsv~~~t----gl-PIsylt--~GQ~Vpd  383 (407)
T PRK12726        351 KMDETTRIGDLYTVMQET----NL-PVLYMT--DGQNITE  383 (407)
T ss_pred             cccCCCCccHHHHHHHHH----CC-CEEEEe--cCCCCCc
Confidence            999876544444333332    33 577777  7887775

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.21  E-value=4.1e-05  Score=76.76  Aligned_cols=152  Identities=13%  Similarity=0.220  Sum_probs=83.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC--------eeeeecCCC----------------CceeeeEEE-------EEeeCCc
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT--------KVAAVSRKT----------------NTTTHEVLG-------VMTKADT  187 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~--------~~~~~~~~~----------------~~t~~~~~~-------~~~~~~~  187 (322)
                      +-.++|+|++||||||++..|.+.        ++..+....                +........       .-...+.
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~  264 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK  264 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence            457899999999999999877642        221111111                100000000       0011346


Q ss_pred             cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV  267 (322)
Q Consensus       188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~  267 (322)
                      +++|+||||.....     .......... ......+-+++|+|++.    ....+.+.++.+..... ..+.=+|+||.
T Consensus       265 D~VLIDTAGRs~~d-----~~l~eel~~l-~~~~~p~e~~LVLsAt~----~~~~l~~i~~~f~~~~~-~~i~glIlTKL  333 (767)
T PRK14723        265 HLVLIDTVGMSQRD-----RNVSEQIAML-CGVGRPVRRLLLLNAAS----HGDTLNEVVHAYRHGAG-EDVDGCIITKL  333 (767)
T ss_pred             CEEEEeCCCCCccC-----HHHHHHHHHH-hccCCCCeEEEEECCCC----cHHHHHHHHHHHhhccc-CCCCEEEEecc
Confidence            78999999976422     1222222222 22334567889999853    33345555555543210 01246889999


Q ss_pred             CCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH-HHHHH
Q 020714          268 DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KALTQ  308 (322)
Q Consensus       268 Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi-~el~~  308 (322)
                      |....-..........    +. |+.+++  +|++| ++|..
T Consensus       334 DEt~~~G~iL~i~~~~----~l-PI~yit--~GQ~VPdDL~~  368 (767)
T PRK14723        334 DEATHLGPALDTVIRH----RL-PVHYVS--TGQKVPEHLEL  368 (767)
T ss_pred             CCCCCccHHHHHHHHH----CC-CeEEEe--cCCCChhhccc
Confidence            9876555444433332    33 578887  78888 66543

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.18  E-value=8.1e-05  Score=71.58  Aligned_cols=148  Identities=18%  Similarity=0.247  Sum_probs=76.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC--------CeeeeecCCCCc------------eeee-EEEEE----------eeC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG--------TKVAAVSRKTNT------------TTHE-VLGVM----------TKA  185 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~--------~~~~~~~~~~~~------------t~~~-~~~~~----------~~~  185 (322)
                      ..+-.++|+|++|+||||++..|..        .++..+......            .... .....          ...
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~  427 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR  427 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence            3456889999999999999987753        122222211100            0000 00000          013


Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      +.++.|+||||......     .....+. .+.... ....++|++....    ...+...++.+...    .+.-+|+|
T Consensus       428 ~~DLVLIDTaG~s~~D~-----~l~eeL~-~L~aa~-~~a~lLVLpAtss----~~Dl~eii~~f~~~----~~~gvILT  492 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDR-----ALAAQLN-WLRAAR-QVTSLLVLPANAH----FSDLDEVVRRFAHA----KPQGVVLT  492 (559)
T ss_pred             cCCEEEecCCCcchhhH-----HHHHHHH-HHHHhh-cCCcEEEEECCCC----hhHHHHHHHHHHhh----CCeEEEEe
Confidence            56899999999863211     1111111 111222 2346677777432    22333445554432    24679999


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH-HHH
Q 020714          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KAL  306 (322)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi-~el  306 (322)
                      |.|....-.........    .+. ++.+++  +|+.| ++|
T Consensus       493 KlDEt~~lG~aLsv~~~----~~L-PI~yvt--~GQ~VPeDL  527 (559)
T PRK12727        493 KLDETGRFGSALSVVVD----HQM-PITWVT--DGQRVPDDL  527 (559)
T ss_pred             cCcCccchhHHHHHHHH----hCC-CEEEEe--CCCCchhhh
Confidence            99986544333322222    233 577777  77777 443

>PRK12288 GTPase RsgA; Reviewed

Probab=98.18  E-value=1.2e-05  Score=74.18  Aligned_cols=87  Identities=21%  Similarity=0.346  Sum_probs=59.2

Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHHHHHhcCCCCCcEEEeec
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+.|.+++|++.....+.  ..+..|+......   ++|.++|+||+|+.....  ........+.. .+. +++++||
T Consensus       118 aANvD~vlIV~s~~p~~s~--~~Ldr~L~~a~~~---~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~-~g~-~v~~vSA  190 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSL--NIIDRYLVACETL---GIEPLIVLNKIDLLDDEGRAFVNEQLDIYRN-IGY-RVLMVSS  190 (347)
T ss_pred             EEEccEEEEEEeCCCCCCH--HHHHHHHHHHHhc---CCCEEEEEECccCCCcHHHHHHHHHHHHHHh-CCC-eEEEEeC
Confidence            4678999999998543322  3444555544432   467999999999976432  22333333323 344 6999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 020714          298 LKGAGLKALTQYLMEQ  313 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~  313 (322)
                      ++|.|+++|+++|...
T Consensus       191 ~tg~GideL~~~L~~k  206 (347)
T PRK12288        191 HTGEGLEELEAALTGR  206 (347)
T ss_pred             CCCcCHHHHHHHHhhC
Confidence            9999999999998753

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.15  E-value=1.3e-05  Score=76.06  Aligned_cols=149  Identities=15%  Similarity=0.162  Sum_probs=79.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCC----------------CceeeeEE--EE--------E-e
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKT----------------NTTTHEVL--GV--------M-T  183 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~----------------~~t~~~~~--~~--------~-~  183 (322)
                      ..+..|+++|.+|+||||++..|..      .++..+....                +.......  ..        + .
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            3567899999999999999876642      2222221111                00000000  00        0 0


Q ss_pred             eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      .....+.|+||||.....     ......+... .....+|.+++|+|++.+   +  ......+.+....   ...-+|
T Consensus       173 ~~~~DvVIIDTAGr~~~d-----~~lm~El~~l-~~~~~pdevlLVvda~~g---q--~av~~a~~F~~~l---~i~gvI  238 (437)
T PRK00771        173 FKKADVIIVDTAGRHALE-----EDLIEEMKEI-KEAVKPDEVLLVIDATIG---Q--QAKNQAKAFHEAV---GIGGII  238 (437)
T ss_pred             hhcCCEEEEECCCcccch-----HHHHHHHHHH-HHHhcccceeEEEecccc---H--HHHHHHHHHHhcC---CCCEEE
Confidence            023478999999986321     1111222222 234457899999998653   1  2223344443221   124688


Q ss_pred             EeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       264 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      +||.|...............    +. |+.+++  +|+.+++|
T Consensus       239 lTKlD~~a~~G~~ls~~~~~----~~-Pi~fig--~Ge~v~Dl  274 (437)
T PRK00771        239 ITKLDGTAKGGGALSAVAET----GA-PIKFIG--TGEKIDDL  274 (437)
T ss_pred             EecccCCCcccHHHHHHHHH----Cc-CEEEEe--cCCCcccC
Confidence            99999865444433323332    33 577777  57766655

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.15  E-value=2.8e-05  Score=74.37  Aligned_cols=149  Identities=14%  Similarity=0.220  Sum_probs=79.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC--------eeeeecCCCC----------------ceeeeEEE-------EEeeCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT--------KVAAVSRKTN----------------TTTHEVLG-------VMTKAD  186 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~--------~~~~~~~~~~----------------~t~~~~~~-------~~~~~~  186 (322)
                      .+..++|+|++||||||++..|.+.        ++..+...+.                ........       .....+
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d  334 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN  334 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence            4567899999999999999887631        2222211110                00000000       011124


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK  266 (322)
                      ..+.++||+|.....     ..... ....+.......-.++|+|+..+    ...+......+....    ..-+|+||
T Consensus       335 ~d~VLIDTaGr~~~d-----~~~~e-~~~~l~~~~~p~e~~LVLdAt~~----~~~l~~i~~~f~~~~----~~g~IlTK  400 (484)
T PRK06995        335 KHIVLIDTIGMSQRD-----RMVSE-QIAMLHGAGAPVKRLLLLNATSH----GDTLNEVVQAYRGPG----LAGCILTK  400 (484)
T ss_pred             CCeEEeCCCCcChhh-----HHHHH-HHHHHhccCCCCeeEEEEeCCCc----HHHHHHHHHHhccCC----CCEEEEeC
Confidence            578999999976321     11111 11122222112337788888532    234445555555432    24678999


Q ss_pred             CCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH-HHHH
Q 020714          267 VDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KALT  307 (322)
Q Consensus       267 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi-~el~  307 (322)
                      .|....-..........    +. |+.+++  +|++| ++|.
T Consensus       401 lDet~~~G~~l~i~~~~----~l-PI~yvt--~GQ~VPeDL~  435 (484)
T PRK06995        401 LDEAASLGGALDVVIRY----KL-PLHYVS--NGQRVPEDLH  435 (484)
T ss_pred             CCCcccchHHHHHHHHH----CC-CeEEEe--cCCCChhhhc
Confidence            99876544444333332    33 577777  78888 6654

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.15  E-value=1.8e-05  Score=72.36  Aligned_cols=94  Identities=9%  Similarity=0.142  Sum_probs=52.7

Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHH--HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRV--ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~--~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      .+..++.|.|...+      ..+...+  ...+...-..+.++.|+|+.+.....+ ........+...      .++|+
T Consensus        91 ~d~IvIEttG~a~p------~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~-~~~~~~~Qi~~A------D~Ivl  157 (318)
T PRK11537         91 FDRLVIECTGMADP------GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYA------DRILL  157 (318)
T ss_pred             CCEEEEECCCccCH------HHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcc-ccHHHHHHHHhC------CEEEE
Confidence            45688888888643      2222222  112222233488999999954221111 111222333333      69999


Q ss_pred             eCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ||+|+....   +.....+...++..+++.++
T Consensus       158 nK~Dl~~~~---~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        158 TKTDVAGEA---EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             eccccCCHH---HHHHHHHHHhCCCCEEEEec
Confidence            999998743   45556666666766666654

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.14  E-value=4.9e-05  Score=80.97  Aligned_cols=131  Identities=15%  Similarity=0.176  Sum_probs=74.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeec-------CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC--hhhH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVS-------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS--HKDV  209 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~  209 (322)
                      -+-.+|+|++|+||||+|+.- |..++-..       ...+.|+....    .-.....++||+|.........  ....
T Consensus       111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w----wf~~~avliDtaG~y~~~~~~~~~~~~~  185 (1169)
T TIGR03348       111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW----WFTDEAVLIDTAGRYTTQDSDPEEDAAA  185 (1169)
T ss_pred             CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce----EecCCEEEEcCCCccccCCCcccccHHH
Confidence            356789999999999999876 33332211       11122222111    1234568999999754332111  0111


Q ss_pred             HHHHHHHHhhc---ccccEEEEEEeCCCCCCCcHH-------HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh
Q 020714          210 KVRVESAWSAV---NLFEVLMVVFDVHRHLTSPDS-------RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK  274 (322)
Q Consensus       210 ~~~~~~~~~~~---~~ad~ii~v~D~s~~~~~~~~-------~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~  274 (322)
                      -..+-..+...   ...++||+++|+.+-......       .+...+.++...-.-..|+.+|+||||+...-.
T Consensus       186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~GF~  260 (1169)
T TIGR03348       186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGFE  260 (1169)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcCHH
Confidence            12233333322   567999999999654322211       233344555544444689999999999987643

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.14  E-value=0.0002  Score=67.01  Aligned_cols=151  Identities=11%  Similarity=0.172  Sum_probs=83.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC----------CeeeeecCCC----------------CceeeeEEEE-------Eee
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG----------TKVAAVSRKT----------------NTTTHEVLGV-------MTK  184 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~----------~~~~~~~~~~----------------~~t~~~~~~~-------~~~  184 (322)
                      .+..++++|++||||||.+..|..          ..+..+...+                +.........       ...
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            356889999999999999876642          2222222111                1100000000       011


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      .+..+.++||+|.....    ... ...+...+.......-+++|+|++.+    ...+...+..+....    +.=+|+
T Consensus       253 ~~~DlVLIDTaGr~~~~----~~~-l~el~~~l~~~~~~~e~~LVlsat~~----~~~~~~~~~~~~~~~----~~~~I~  319 (388)
T PRK12723        253 KDFDLVLVDTIGKSPKD----FMK-LAEMKELLNACGRDAEFHLAVSSTTK----TSDVKEIFHQFSPFS----YKTVIF  319 (388)
T ss_pred             CCCCEEEEcCCCCCccC----HHH-HHHHHHHHHhcCCCCeEEEEEcCCCC----HHHHHHHHHHhcCCC----CCEEEE
Confidence            35789999999986321    111 12233344433323358899999543    334445566655321    357899


Q ss_pred             eCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH-HHHHH
Q 020714          265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KALTQ  308 (322)
Q Consensus       265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi-~el~~  308 (322)
                      ||.|....-..........    +. |+.+++  +|+++ +++..
T Consensus       320 TKlDet~~~G~~l~~~~~~----~~-Pi~yit--~Gq~vPeDl~~  357 (388)
T PRK12723        320 TKLDETTCVGNLISLIYEM----RK-EVSYVT--DGQIVPHNISI  357 (388)
T ss_pred             EeccCCCcchHHHHHHHHH----CC-CEEEEe--CCCCChhhhhh
Confidence            9999876555444433332    23 577777  78888 55543

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=2.4e-05  Score=70.90  Aligned_cols=157  Identities=18%  Similarity=0.258  Sum_probs=90.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeee-------------ecCCCCceeeeEEEE---------------------Ee
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-------------VSRKTNTTTHEVLGV---------------------MT  183 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-------------~~~~~~~t~~~~~~~---------------------~~  183 (322)
                      -.++++++|-..+|||||+--|+......             .....|.|......+                     ..
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            35799999999999999998876432110             001112221111110                     11


Q ss_pred             eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ....-++|+|.+|...+...-.         ..+.. ...+..++|+.+..+.+....+-..++..++      .|++++
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi---------~gLtg-Y~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~------iPfFvl  309 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTI---------HGLTG-YTPHFACLVVSADRGITWTTREHLGLIAALN------IPFFVL  309 (591)
T ss_pred             hhcceEEEeecccchhhheeee---------eeccc-CCCceEEEEEEcCCCCccccHHHHHHHHHhC------CCeEEE
Confidence            1234578999999875532100         01111 1237888999888776665544444444443      579999


Q ss_pred             EeCCCCCCChh---HHHHHHHHH------------------------hcCCCCCcEEEeecCCCCCHHHHHHHH
Q 020714          264 MNKVDLVTKKK---DLLKVAEQF------------------------KHLPGYERIFMTSGLKGAGLKALTQYL  310 (322)
Q Consensus       264 ~NK~Dl~~~~~---~~~~~~~~~------------------------~~~~~~~~~~~iSa~~g~gi~el~~~i  310 (322)
                      ++|+|+.....   ...+....+                        ....+..|+|.+|..+|+|++-+...+
T Consensus       310 vtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  310 VTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             EEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence            99999987621   111111110                        112234579999999999998765443

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.12  E-value=0.0002  Score=66.39  Aligned_cols=169  Identities=13%  Similarity=0.158  Sum_probs=93.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC-----------------eeeeecCCCCceeeeEEEE----------Ee-eCCcc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT-----------------KVAAVSRKTNTTTHEVLGV----------MT-KADTQ  188 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~-----------------~~~~~~~~~~~t~~~~~~~----------~~-~~~~~  188 (322)
                      ...+=+++||+--+||||||.++...                 ..++  +..|.|..++...          +. ....+
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQ--S~aGktImTTEPKFiP~eAv~I~l~~~~~~k   92 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQ--SGAGKTIMTTEPKFIPNEAVEITLDDGIKVK   92 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCc--CCCCCceeccCCcccCCcceEEEecCCceEE
Confidence            45677999999999999999997531                 1111  2223333322221          11 12356


Q ss_pred             EEEEeCCCcccCC-------------------CCCChhhHHHHHHHHHhhccccc--EEEEEEeCCCCCCC---cHHHHH
Q 020714          189 ICIFDTPGLMLNK-------------------SGYSHKDVKVRVESAWSAVNLFE--VLMVVFDVHRHLTS---PDSRVI  244 (322)
Q Consensus       189 ~~l~DtpG~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ad--~ii~v~D~s~~~~~---~~~~~~  244 (322)
                      +.++||.|+....                   ...+++..++  --+...+..=.  ++++.-|.|-..-.   ....-.
T Consensus        93 VRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAe--iGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEe  170 (492)
T PF09547_consen   93 VRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAE--IGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEE  170 (492)
T ss_pred             EEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHh--hcccceeccCCceeEEEecCCCccCCChHHHHHHHH
Confidence            7899999986432                   2233333221  00111121112  23333444321100   011222


Q ss_pred             HHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          245 RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       245 ~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ..+.+++.-   ++|+++++|-.+  +......+....+...++. ++++++|. .-.-+++...+.+.+.+
T Consensus       171 rvI~ELk~i---gKPFvillNs~~--P~s~et~~L~~eL~ekY~v-pVlpvnc~-~l~~~DI~~Il~~vLyE  235 (492)
T PF09547_consen  171 RVIEELKEI---GKPFVILLNSTK--PYSEETQELAEELEEKYDV-PVLPVNCE-QLREEDITRILEEVLYE  235 (492)
T ss_pred             HHHHHHHHh---CCCEEEEEeCCC--CCCHHHHHHHHHHHHHhCC-cEEEeehH-HcCHHHHHHHHHHHHhc
Confidence            334444433   467999999998  4446677778888888888 59999985 34666777777776664

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.11  E-value=2.2e-05  Score=63.62  Aligned_cols=19  Identities=47%  Similarity=0.989  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhHHHHHHh
Q 020714          142 VGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~  160 (322)
                      ++++|.+|+||||++..+.
T Consensus         2 i~~~G~~GsGKTt~~~~l~   20 (148)
T cd03114           2 IGITGVPGAGKSTLIDALI   20 (148)
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7899999999999988765

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.10  E-value=1.7e-05  Score=66.55  Aligned_cols=122  Identities=15%  Similarity=0.229  Sum_probs=64.2

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH---HHHHHHHHhcccCCCCCcEEE
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS---RVIRLIERMGKQAPPKQKRVL  262 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~---~~~~~l~~~~~~~~~~~p~iv  262 (322)
                      ...+.++|+||+++-..   +..+...+-+.+..+.--=.+++++|.. -..+...   .....+..+..-   ..|-|=
T Consensus        97 eddylifDcPGQIELyt---H~pVm~~iv~hl~~~~F~~c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~l---E~P~IN  169 (273)
T KOG1534|consen   97 EDDYLIFDCPGQIELYT---HLPVMPQIVEHLKQWNFNVCVVYLLDSQ-FLVDSTKFISGCLSALSAMISL---EVPHIN  169 (273)
T ss_pred             cCCEEEEeCCCeeEEee---cChhHHHHHHHHhcccCceeEEEEeccc-hhhhHHHHHHHHHHHHHHHHHh---cCcchh
Confidence            35789999999986432   2222223333333332223456666652 1112222   222222222222   467899


Q ss_pred             EEeCCCCCCChh--HHHH---------------------------HHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714          263 CMNKVDLVTKKK--DLLK---------------------------VAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       263 V~NK~Dl~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      |++|.||.....  ..+.                           .+..+-+-++...+++.-....+.|+.++..|..+
T Consensus       170 vlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~a  249 (273)
T KOG1534|consen  170 VLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDA  249 (273)
T ss_pred             hhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHH
Confidence            999999987521  1110                           11112233455567777777777888887777665


Q ss_pred             h
Q 020714          314 F  314 (322)
Q Consensus       314 l  314 (322)
                      +
T Consensus       250 i  250 (273)
T KOG1534|consen  250 I  250 (273)
T ss_pred             H
Confidence            5

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.09  E-value=0.00014  Score=68.19  Aligned_cols=148  Identities=14%  Similarity=0.200  Sum_probs=79.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC-------eeeeecCCC----------------CceeeeEEE------EEeeCCcc
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT-------KVAAVSRKT----------------NTTTHEVLG------VMTKADTQ  188 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~-------~~~~~~~~~----------------~~t~~~~~~------~~~~~~~~  188 (322)
                      .+..++++|++||||||++..|...       .+..+...+                +........      .....+.+
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D  301 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE  301 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence            3456889999999999999877531       222111111                110000000      00113668


Q ss_pred             EEEEeCCCcccCCCCCChhhHHHHHHHHHhhcc--cccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714          189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN--LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (322)
Q Consensus       189 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK  266 (322)
                      +.++||||.....     ......+...+....  ...-.++|+|++.+    ...+......+....    +.-+|+||
T Consensus       302 ~VLIDTaGr~~rd-----~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~----~~~~~~~~~~f~~~~----~~glIlTK  368 (432)
T PRK12724        302 LILIDTAGYSHRN-----LEQLERMQSFYSCFGEKDSVENLLVLSSTSS----YHHTLTVLKAYESLN----YRRILLTK  368 (432)
T ss_pred             EEEEeCCCCCccC-----HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC----HHHHHHHHHHhcCCC----CCEEEEEc
Confidence            8999999986321     122223333333332  23467889998543    234445555554332    25789999


Q ss_pred             CCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHH
Q 020714          267 VDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA  305 (322)
Q Consensus       267 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~e  305 (322)
                      .|....-..........    +. |+.+++  +|++|.+
T Consensus       369 LDEt~~~G~il~i~~~~----~l-PI~ylt--~GQ~VPe  400 (432)
T PRK12724        369 LDEADFLGSFLELADTY----SK-SFTYLS--VGQEVPF  400 (432)
T ss_pred             ccCCCCccHHHHHHHHH----CC-CEEEEe--cCCCCCC
Confidence            99876544443333332    33 566766  6666644

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.06  E-value=1.4e-05  Score=70.42  Aligned_cols=164  Identities=13%  Similarity=0.252  Sum_probs=94.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeec--------------------------CCCCceeeeE-----EEEEee
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS--------------------------RKTNTTTHEV-----LGVMTK  184 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~--------------------------~~~~~t~~~~-----~~~~~~  184 (322)
                      +...++|+-+|.---||||++.++.|-....-.                          +.|+.-+..-     ...+..
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            345789999999999999999988762211000                          0011000000     000000


Q ss_pred             CC--------ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCC
Q 020714          185 AD--------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAP  255 (322)
Q Consensus       185 ~~--------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~  255 (322)
                      .+        ..+.|+|+||..-        .+    ..++.-..-.|..++++.....+-.+.. +-...++.+..   
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDi--------LM----aTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L---  179 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDI--------LM----ATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL---  179 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHH--------HH----HHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh---
Confidence            01        2357999999641        12    2223333444888888877654433332 22233333332   


Q ss_pred             CCCcEEEEEeCCCCCCChhHH---HHHHHHHhcCC-CCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          256 PKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLP-GYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       256 ~~~p~ivV~NK~Dl~~~~~~~---~~~~~~~~~~~-~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                        +.++++-||+|+....+..   +++...+.... ...|++++||.-+.||+-+.++|.+.+..
T Consensus       180 --khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv  242 (466)
T KOG0466|consen  180 --KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV  242 (466)
T ss_pred             --ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence              2389999999998764432   23333333221 23479999999999999999999988753

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.06  E-value=1.2e-05  Score=76.80  Aligned_cols=117  Identities=26%  Similarity=0.336  Sum_probs=77.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC---C--eeeeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG---T--KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~---~--~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      +.-+|+++-.--+||||+-++++.   .  +...+.            ..-|.|.......+.+.+.++.++||||...|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            345678888889999999998752   1  111111            12244444444445566889999999999877


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      ..         .+.+++..+   |+.++|+|+..+...+...+...+.+.      ++|.+..+||.|....
T Consensus       118 T~---------EVeRALrVl---DGaVlvl~aV~GVqsQt~tV~rQ~~ry------~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  118 TF---------EVERALRVL---DGAVLVLDAVAGVESQTETVWRQMKRY------NVPRICFINKMDRMGA  171 (721)
T ss_pred             EE---------Eehhhhhhc---cCeEEEEEcccceehhhHHHHHHHHhc------CCCeEEEEehhhhcCC
Confidence            54         233444444   899999998777666555555555544      4679999999998754

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.05  E-value=4.6e-05  Score=72.33  Aligned_cols=149  Identities=15%  Similarity=0.179  Sum_probs=78.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC--------CeeeeecCCCCce------------ee-eEEEE----------EeeCCc
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG--------TKVAAVSRKTNTT------------TH-EVLGV----------MTKADT  187 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~--------~~~~~~~~~~~~t------------~~-~~~~~----------~~~~~~  187 (322)
                      +-.++|+|++||||||++..|..        .++..+...+...            .. .....          ....+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~  300 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC  300 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence            34789999999999998766532        2233222222100            00 00000          011356


Q ss_pred             cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV  267 (322)
Q Consensus       188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~  267 (322)
                      ++.|+||||......    .. ...+...+.......-+.+|++++.    ....+......+....    +.-+|+||.
T Consensus       301 DlVlIDt~G~~~~d~----~~-~~~L~~ll~~~~~~~~~~LVl~a~~----~~~~l~~~~~~f~~~~----~~~vI~TKl  367 (424)
T PRK05703        301 DVILIDTAGRSQRDK----RL-IEELKALIEFSGEPIDVYLVLSATT----KYEDLKDIYKHFSRLP----LDGLIFTKL  367 (424)
T ss_pred             CEEEEeCCCCCCCCH----HH-HHHHHHHHhccCCCCeEEEEEECCC----CHHHHHHHHHHhCCCC----CCEEEEecc
Confidence            899999999863211    11 2223333332223356677888743    2234445555555321    236899999


Q ss_pred             CCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH-HHHH
Q 020714          268 DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KALT  307 (322)
Q Consensus       268 Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi-~el~  307 (322)
                      |..............    .+. |+.+++  +|++| +++.
T Consensus       368 Det~~~G~i~~~~~~----~~l-Pv~yit--~Gq~VpdDl~  401 (424)
T PRK05703        368 DETSSLGSILSLLIE----SGL-PISYLT--NGQRVPDDIK  401 (424)
T ss_pred             cccccccHHHHHHHH----HCC-CEEEEe--CCCCChhhhh
Confidence            986554433222222    233 577777  78886 5544

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=98.05  E-value=1.5e-05  Score=67.84  Aligned_cols=82  Identities=17%  Similarity=0.211  Sum_probs=43.2

Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK  266 (322)
                      ..+.++|+||+.+....+   .....+-+.++...-.=+++.++|. .-++++..-+..++..+..--.-..|-+=|++|
T Consensus        97 ~~Y~lFDcPGQVELft~h---~~l~~I~~~Lek~~~rl~~V~LiDs-~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK  172 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHH---DSLNKIFRKLEKLDYRLVAVNLIDS-HYCSDPSKFISSLLVSLATMLHMELPHVNVLSK  172 (290)
T ss_pred             CcEEEEeCCCcEEEEecc---chHHHHHHHHHHcCceEEEEEeeec-eeeCChHHHHHHHHHHHHHHHhhcccchhhhhH
Confidence            568999999998765422   2223333333334333455566665 333444433333332222111113457889999


Q ss_pred             CCCCCC
Q 020714          267 VDLVTK  272 (322)
Q Consensus       267 ~Dl~~~  272 (322)
                      +|+...
T Consensus       173 ~Dl~~~  178 (290)
T KOG1533|consen  173 ADLLKK  178 (290)
T ss_pred             hHHHHh
Confidence            999753

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.01  E-value=3.7e-05  Score=69.19  Aligned_cols=153  Identities=16%  Similarity=0.232  Sum_probs=84.8

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC------CeeeeecC----------------CCCceeee-------EEEE-----
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSR----------------KTNTTTHE-------VLGV-----  181 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~----------------~~~~t~~~-------~~~~-----  181 (322)
                      ..+++.++++|-.|+||||.|-.|..      .++.....                ..|+..-.       ....     
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            45689999999999999999877652      11111100                00111100       0000     


Q ss_pred             -EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccE-----EEEEEeCCCCCCCcHHHHHHHHHHhcccCC
Q 020714          182 -MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEV-----LMVVFDVHRHLTSPDSRVIRLIERMGKQAP  255 (322)
Q Consensus       182 -~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~-----ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~  255 (322)
                       -...+.++.|+||+|-....     ..+...+......+...+.     +++++|+..+.+.-     ...+.+.....
T Consensus       216 ~Akar~~DvvliDTAGRLhnk-----~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal-----~QAk~F~eav~  285 (340)
T COG0552         216 AAKARGIDVVLIDTAGRLHNK-----KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL-----SQAKIFNEAVG  285 (340)
T ss_pred             HHHHcCCCEEEEeCcccccCc-----hhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH-----HHHHHHHHhcC
Confidence             01135789999999986432     3333334444444444444     88889997543221     22222222111


Q ss_pred             CCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHH
Q 020714          256 PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ  308 (322)
Q Consensus       256 ~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~  308 (322)
                         -.-+|+||+|..........+...+    +. |+.++.  -|+++++|..
T Consensus       286 ---l~GiIlTKlDgtAKGG~il~I~~~l----~~-PI~fiG--vGE~~~DL~~  328 (340)
T COG0552         286 ---LDGIILTKLDGTAKGGIILSIAYEL----GI-PIKFIG--VGEGYDDLRP  328 (340)
T ss_pred             ---CceEEEEecccCCCcceeeeHHHHh----CC-CEEEEe--CCCChhhccc
Confidence               1468999999654433333333333    33 688887  6899998864

>PRK10867 signal recognition particle protein; Provisional

Probab=97.97  E-value=0.00045  Score=65.58  Aligned_cols=101  Identities=15%  Similarity=0.187  Sum_probs=53.3

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      +.++.|+||||.....     ......+...... ...+.+++|+|+..   .  .......+.+....   ...-+|+|
T Consensus       183 ~~DvVIIDTaGrl~~d-----~~lm~eL~~i~~~-v~p~evllVlda~~---g--q~av~~a~~F~~~~---~i~giIlT  248 (433)
T PRK10867        183 GYDVVIVDTAGRLHID-----EELMDELKAIKAA-VNPDEILLVVDAMT---G--QDAVNTAKAFNEAL---GLTGVILT  248 (433)
T ss_pred             CCCEEEEeCCCCcccC-----HHHHHHHHHHHHh-hCCCeEEEEEeccc---H--HHHHHHHHHHHhhC---CCCEEEEe
Confidence            4679999999976321     2222222222222 34567799999843   1  22233344444221   12467889


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHH
Q 020714          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT  307 (322)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~  307 (322)
                      |.|..............    .+. |+.+++  +|+++++|.
T Consensus       249 KlD~~~rgG~alsi~~~----~~~-PI~fig--~Ge~v~DLe  283 (433)
T PRK10867        249 KLDGDARGGAALSIRAV----TGK-PIKFIG--TGEKLDDLE  283 (433)
T ss_pred             CccCcccccHHHHHHHH----HCc-CEEEEe--CCCccccCc
Confidence            99975543433332222    233 577776  366665543

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.96  E-value=0.00016  Score=66.09  Aligned_cols=128  Identities=15%  Similarity=0.214  Sum_probs=77.9

Q ss_pred             EEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC--CCCcHH---HHH---HHHHHh-c
Q 020714          181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH--LTSPDS---RVI---RLIERM-G  251 (322)
Q Consensus       181 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~--~~~~~~---~~~---~~l~~~-~  251 (322)
                      .+...+..+.++|.+|+...            -+.....+.+++++|++++.+.-  ...++.   .+.   .+.+.+ .
T Consensus       189 ~F~~k~~~f~~~DvGGQRse------------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n  256 (354)
T KOG0082|consen  189 EFTIKGLKFRMFDVGGQRSE------------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN  256 (354)
T ss_pred             EEEeCCCceEEEeCCCcHHH------------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence            35566788999999998621            23444567889999999988642  122222   222   222222 3


Q ss_pred             ccCCCCCcEEEEEeCCCCCCCh--------------------hHHHHHHHHHhcCCCC--Cc--EEEeecCCCCCHHHHH
Q 020714          252 KQAPPKQKRVLCMNKVDLVTKK--------------------KDLLKVAEQFKHLPGY--ER--IFMTSGLKGAGLKALT  307 (322)
Q Consensus       252 ~~~~~~~p~ivV~NK~Dl~~~~--------------------~~~~~~~~~~~~~~~~--~~--~~~iSa~~g~gi~el~  307 (322)
                      .....+.++|+.+||.|+-...                    ....-+...|...+..  .+  +..+.|..-.+|+.+|
T Consensus       257 ~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf  336 (354)
T KOG0082|consen  257 NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVF  336 (354)
T ss_pred             CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHH
Confidence            3444568899999999986421                    0111122223222211  11  4556888888999999


Q ss_pred             HHHHHHhhhcCCc
Q 020714          308 QYLMEQFKDLGLK  320 (322)
Q Consensus       308 ~~i~~~l~~~~~~  320 (322)
                      +.+.+.+..+.++
T Consensus       337 ~av~d~Ii~~nlk  349 (354)
T KOG0082|consen  337 DAVTDTIIQNNLK  349 (354)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888776543

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.94  E-value=0.00044  Score=61.61  Aligned_cols=147  Identities=17%  Similarity=0.254  Sum_probs=82.1

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC------eeeeecCCCC--------ce----ee-eEEEEE-------------eeC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT------KVAAVSRKTN--------TT----TH-EVLGVM-------------TKA  185 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~------~~~~~~~~~~--------~t----~~-~~~~~~-------------~~~  185 (322)
                      .+-+++++|++|+||||++..+...      .+..+.....        .+    .. ......             ...
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            4468999999999999998876431      2221111110        00    00 000000             012


Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      +.++.++||||......    ..+ ..+...+.. ...+-+++|+|++.    ........++.+...    .+.=+|+|
T Consensus       154 ~~D~ViIDt~Gr~~~~~----~~l-~el~~~~~~-~~~~~~~LVl~a~~----~~~d~~~~~~~f~~~----~~~~~I~T  219 (270)
T PRK06731        154 RVDYILIDTAGKNYRAS----ETV-EEMIETMGQ-VEPDYICLTLSASM----KSKDMIEIITNFKDI----HIDGIVFT  219 (270)
T ss_pred             CCCEEEEECCCCCcCCH----HHH-HHHHHHHhh-hCCCeEEEEEcCcc----CHHHHHHHHHHhCCC----CCCEEEEE
Confidence            56899999999863221    222 223333332 23467899999843    223455666666643    23578999


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHH
Q 020714          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA  305 (322)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~e  305 (322)
                      |.|...............    +. |+.+++  +|+++.+
T Consensus       220 KlDet~~~G~~l~~~~~~----~~-Pi~~it--~Gq~vp~  252 (270)
T PRK06731        220 KFDETASSGELLKIPAVS----SA-PIVLMT--DGQDVKK  252 (270)
T ss_pred             eecCCCCccHHHHHHHHH----Cc-CEEEEe--CCCCCCc
Confidence            999877554444433332    33 577777  7777764

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=6.6e-06  Score=75.28  Aligned_cols=116  Identities=22%  Similarity=0.253  Sum_probs=77.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC--------e---------eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT--------K---------VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~--------~---------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~  201 (322)
                      .-+|+++..-.+||||...+++--        +         +.......|.|.......+.+.|.++.++||||...|.
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence            346889999999999999887521        0         11122233556665555577889999999999998775


Q ss_pred             CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      .         .+.+.+   +.-|+++.|||++.+...+...++..      ...-+.|-++.+||+|....
T Consensus       117 l---------evercl---rvldgavav~dasagve~qtltvwrq------adk~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  117 L---------EVERCL---RVLDGAVAVFDASAGVEAQTLTVWRQ------ADKFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             E---------EHHHHH---HHhcCeEEEEeccCCcccceeeeehh------ccccCCchhhhhhhhhhhhh
Confidence            3         122332   33399999999988765544333332      22334678999999998754

>PRK01889 GTPase RsgA; Reviewed

Probab=97.89  E-value=9.3e-05  Score=68.80  Aligned_cols=84  Identities=18%  Similarity=0.324  Sum_probs=55.4

Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      +.+.|.+++|+++......  ..+..++..+...   +.+.++|+||+||.+......+....+   ....+++.+|+++
T Consensus       110 aANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~~~~~~~~~~---~~g~~Vi~vSa~~  181 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNL--RRIERYLALAWES---GAEPVIVLTKADLCEDAEEKIAEVEAL---APGVPVLAVSALD  181 (356)
T ss_pred             EEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHc---CCCEEEEEEChhcCCCHHHHHHHHHHh---CCCCcEEEEECCC
Confidence            5778999999999543322  2344455444433   345789999999986532222222222   2233699999999


Q ss_pred             CCCHHHHHHHHH
Q 020714          300 GAGLKALTQYLM  311 (322)
Q Consensus       300 g~gi~el~~~i~  311 (322)
                      |.|+++|..+|.
T Consensus       182 g~gl~~L~~~L~  193 (356)
T PRK01889        182 GEGLDVLAAWLS  193 (356)
T ss_pred             CccHHHHHHHhh
Confidence            999999999885

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.89  E-value=0.00021  Score=66.05  Aligned_cols=108  Identities=16%  Similarity=0.184  Sum_probs=58.6

Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHH-HHhhcccccEEEEEEeCCCCCC-----Cc---------------HHHHHH
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVES-AWSAVNLFEVLMVVFDVHRHLT-----SP---------------DSRVIR  245 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~ad~ii~v~D~s~~~~-----~~---------------~~~~~~  245 (322)
                      .+..++.|.|+..+      ..+...+.. .+...-..|.++.|+|+.+-..     ..               ...+..
T Consensus        93 ~d~IvIEtsG~a~P------~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (341)
T TIGR02475        93 PDHILIETSGLALP------KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEE  166 (341)
T ss_pred             CCEEEEeCCCCCCH------HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHH
Confidence            56789999998754      333333311 1112234588999999963211     00               000111


Q ss_pred             -HHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCC-CCcEEEeecCCCCCHHHHHH
Q 020714          246 -LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG-YERIFMTSGLKGAGLKALTQ  308 (322)
Q Consensus       246 -~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~iSa~~g~gi~el~~  308 (322)
                       +...+...      .++|+||+|+... .........+...++ ..+++.++ ........++.
T Consensus       167 ~~~~Qi~~A------D~IvlnK~Dl~~~-~~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~  223 (341)
T TIGR02475       167 LFEDQLACA------DLVILNKADLLDA-AGLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG  223 (341)
T ss_pred             HHHHHHHhC------CEEEEeccccCCH-HHHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence             22333333      6999999999875 445555666666444 33455554 34445555554

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=97.88  E-value=0.0025  Score=60.73  Aligned_cols=132  Identities=17%  Similarity=0.294  Sum_probs=77.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee---------------ecC-------------------------------
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA---------------VSR-------------------------------  169 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~---------------~~~-------------------------------  169 (322)
                      ...-++|++||.-.+||||.+..+...++..               .+.                               
T Consensus       305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E  384 (980)
T KOG0447|consen  305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE  384 (980)
T ss_pred             cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence            4456789999999999999998876422110               000                               


Q ss_pred             -------CCCceeeeEEEEEeeCC---ccEEEEeCCCcccCC-CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCC
Q 020714          170 -------KTNTTTHEVLGVMTKAD---TQICIFDTPGLMLNK-SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS  238 (322)
Q Consensus       170 -------~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~  238 (322)
                             ..|.|.......+...|   .+..++|.||++..- .++....-...+.-+-.++.+.+.||+++--  +..+
T Consensus       385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD--GSVD  462 (980)
T KOG0447|consen  385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD--GSVD  462 (980)
T ss_pred             HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc--CCcc
Confidence                   11222322222233333   356899999997543 2222222233344444567777888877642  1122


Q ss_pred             cH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          239 PD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       239 ~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      .+ ..+.+++..+...   +...|+|++|+|+...
T Consensus       463 AERSnVTDLVsq~DP~---GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  463 AERSIVTDLVSQMDPH---GRRTIFVLTKVDLAEK  494 (980)
T ss_pred             hhhhhHHHHHHhcCCC---CCeeEEEEeecchhhh
Confidence            22 3466666666544   5679999999999865

>TIGR00959 ffh signal recognition particle protein

Probab=97.88  E-value=0.0001  Score=69.81  Aligned_cols=100  Identities=15%  Similarity=0.197  Sum_probs=53.0

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      +.++.|+||||.....     ......+..... .-..|.+++|+|+..+   ++  .......+....   ...-+|+|
T Consensus       182 ~~DvVIIDTaGr~~~d-----~~l~~eL~~i~~-~~~p~e~lLVvda~tg---q~--~~~~a~~f~~~v---~i~giIlT  247 (428)
T TIGR00959       182 GFDVVIVDTAGRLQID-----EELMEELAAIKE-ILNPDEILLVVDAMTG---QD--AVNTAKTFNERL---GLTGVVLT  247 (428)
T ss_pred             CCCEEEEeCCCccccC-----HHHHHHHHHHHH-hhCCceEEEEEeccch---HH--HHHHHHHHHhhC---CCCEEEEe
Confidence            4678999999976321     112222222222 3346888999998532   22  223333333211   12468899


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      |.|..............    .+. |+.+++  +|+.++++
T Consensus       248 KlD~~~~~G~~lsi~~~----~~~-PI~fi~--~Ge~i~dl  281 (428)
T TIGR00959       248 KLDGDARGGAALSVRSV----TGK-PIKFIG--VGEKIDDL  281 (428)
T ss_pred             CccCcccccHHHHHHHH----HCc-CEEEEe--CCCChhhC
Confidence            99975543433333333    233 577766  36666554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.84  E-value=0.0017  Score=52.52  Aligned_cols=80  Identities=11%  Similarity=0.191  Sum_probs=46.3

Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      +..||+++  +|-=.+.......+.+.++.+-..   ++|.|.++.+-+..+       ..+.+....+.  +++   .+
T Consensus        98 ~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~---~kpliatlHrrsr~P-------~v~~ik~~~~v--~v~---lt  160 (179)
T COG1618          98 LEEADVII--IDEIGPMELKSKKFREAVEEVLKS---GKPLIATLHRRSRHP-------LVQRIKKLGGV--YVF---LT  160 (179)
T ss_pred             hhcCCEEE--EecccchhhccHHHHHHHHHHhcC---CCcEEEEEecccCCh-------HHHHhhhcCCE--EEE---Ec
Confidence            34467665  776444444334566666666644   467888888776522       12233333222  333   56


Q ss_pred             CCCHHHHHHHHHHHhhh
Q 020714          300 GAGLKALTQYLMEQFKD  316 (322)
Q Consensus       300 g~gi~el~~~i~~~l~~  316 (322)
                      -.|=+.++..|...+..
T Consensus       161 ~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         161 PENRNRILNEILSVLKG  177 (179)
T ss_pred             cchhhHHHHHHHHHhcc
Confidence            66666888888887754

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=97.73  E-value=0.00011  Score=64.88  Aligned_cols=136  Identities=18%  Similarity=0.332  Sum_probs=72.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC----CeeeeecCCCCceee-------eE-------------EEE------------
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG----TKVAAVSRKTNTTTH-------EV-------------LGV------------  181 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~----~~~~~~~~~~~~t~~-------~~-------------~~~------------  181 (322)
                      +.+.-.+.|+-|+|||||+|.++.    ++++..-+.+|-..+       ..             .+.            
T Consensus        56 rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvra  135 (391)
T KOG2743|consen   56 RIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVRA  135 (391)
T ss_pred             ccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHHH
Confidence            344557899999999999999873    344433333322100       00             000            


Q ss_pred             -----EeeCCccEEEEeCCCcccCCCCCChhhHHHHH--HHHHhhcccccEEEEEEeCCCCC---C--CcHHHHHHHHHH
Q 020714          182 -----MTKADTQICIFDTPGLMLNKSGYSHKDVKVRV--ESAWSAVNLFEVLMVVFDVHRHL---T--SPDSRVIRLIER  249 (322)
Q Consensus       182 -----~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~--~~~~~~~~~ad~ii~v~D~s~~~---~--~~~~~~~~~l~~  249 (322)
                           ...+..+..++.|-|+-.+.+      ++.+|  ...+..--.-|+++-|+|+-+..   .  ..+..+.+....
T Consensus       136 ie~lvqkkGkfD~IllETTGlAnPaP------ia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q  209 (391)
T KOG2743|consen  136 IENLVQKKGKFDHILLETTGLANPAP------IASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ  209 (391)
T ss_pred             HHHHHhcCCCcceEEEeccCCCCcHH------HHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence                 012334678999999976643      22222  12222223449999999985321   1  111123333333


Q ss_pred             hcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714          250 MGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL  286 (322)
Q Consensus       250 ~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~  286 (322)
                      +...      .-+++||.|++.. +........+...
T Consensus       210 iA~A------D~II~NKtDli~~-e~~~~l~q~I~~I  239 (391)
T KOG2743|consen  210 IALA------DRIIMNKTDLVSE-EEVKKLRQRIRSI  239 (391)
T ss_pred             Hhhh------heeeeccccccCH-HHHHHHHHHHHHh
Confidence            3322      4678999999986 3344444444433

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.71  E-value=0.0021  Score=53.28  Aligned_cols=76  Identities=13%  Similarity=0.139  Sum_probs=41.0

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      +..+.++||||.....     ......+.... .....+.+++|+|....   . ... .....+....  + ..-+|+|
T Consensus        82 ~~d~viiDt~g~~~~~-----~~~l~~l~~l~-~~~~~~~~~lVv~~~~~---~-~~~-~~~~~~~~~~--~-~~~vilt  147 (173)
T cd03115          82 NFDVVIVDTAGRLQID-----ENLMEELKKIK-RVVKPDEVLLVVDAMTG---Q-DAV-NQAKAFNEAL--G-ITGVILT  147 (173)
T ss_pred             CCCEEEEECcccchhh-----HHHHHHHHHHH-hhcCCCeEEEEEECCCC---h-HHH-HHHHHHHhhC--C-CCEEEEE
Confidence            5578999999975321     11122222222 22347999999998432   1 112 2333332111  1 2578889


Q ss_pred             CCCCCCChhH
Q 020714          266 KVDLVTKKKD  275 (322)
Q Consensus       266 K~Dl~~~~~~  275 (322)
                      |.|.......
T Consensus       148 k~D~~~~~g~  157 (173)
T cd03115         148 KLDGDARGGA  157 (173)
T ss_pred             CCcCCCCcch
Confidence            9998765443

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.0002  Score=65.34  Aligned_cols=123  Identities=15%  Similarity=0.152  Sum_probs=66.0

Q ss_pred             hhhccCceEEEEEcCCCCchhHHHHHHhC------CeeeeecC-CC--C----------ceeeeEEEE------------
Q 020714          133 KEEDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSR-KT--N----------TTTHEVLGV------------  181 (322)
Q Consensus       133 ~~~~~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~-~~--~----------~t~~~~~~~------------  181 (322)
                      .+...++-.|+++|--|+||||.+-.|..      -+.+-+-. ++  +          .++.+..+.            
T Consensus        95 ~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~e  174 (483)
T KOG0780|consen   95 QPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASE  174 (483)
T ss_pred             ccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHH
Confidence            34566777899999999999999876541      11111000 00  0          000001000            


Q ss_pred             ----EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh--hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC
Q 020714          182 ----MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS--AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP  255 (322)
Q Consensus       182 ----~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~--~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~  255 (322)
                          +...+.++.|+||.|-+.        .....|.+..+  ..-..|.+|+|+|++-+..-.     ...+.++....
T Consensus       175 gv~~fKke~fdvIIvDTSGRh~--------qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae-----~Qa~aFk~~vd  241 (483)
T KOG0780|consen  175 GVDRFKKENFDVIIVDTSGRHK--------QEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE-----AQARAFKETVD  241 (483)
T ss_pred             HHHHHHhcCCcEEEEeCCCchh--------hhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH-----HHHHHHHHhhc
Confidence                122467899999999763        22222332222  234469999999997653222     22222322211


Q ss_pred             CCCcEEEEEeCCCCCC
Q 020714          256 PKQKRVLCMNKVDLVT  271 (322)
Q Consensus       256 ~~~p~ivV~NK~Dl~~  271 (322)
                      -   --+++||.|...
T Consensus       242 v---g~vIlTKlDGha  254 (483)
T KOG0780|consen  242 V---GAVILTKLDGHA  254 (483)
T ss_pred             c---ceEEEEecccCC
Confidence            0   357899999753

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.00028  Score=73.78  Aligned_cols=161  Identities=15%  Similarity=0.146  Sum_probs=86.0

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCe-eeeecC-----CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHH--
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTK-VAAVSR-----KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK--  210 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~-----~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~--  210 (322)
                      -+=-+|+|+||+||||++..---.. ......     .+| |++...    .-+..-.++||.|-.....+.+.....  
T Consensus       125 LPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdw----wf~deaVlIDtaGry~~q~s~~~~~~~~W  199 (1188)
T COG3523         125 LPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDW----WFTDEAVLIDTAGRYITQDSADEVDRAEW  199 (1188)
T ss_pred             CCceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCc----ccccceEEEcCCcceecccCcchhhHHHH
Confidence            3456799999999999986432211 111111     122 333221    224566899999986544322212211  


Q ss_pred             HHHHHHH---hhcccccEEEEEEeCCCCCCCcHHH-------HHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHH
Q 020714          211 VRVESAW---SAVNLFEVLMVVFDVHRHLTSPDSR-------VIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA  280 (322)
Q Consensus       211 ~~~~~~~---~~~~~ad~ii~v~D~s~~~~~~~~~-------~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~  280 (322)
                      .++-..+   .....-++||+.+|+++-.+.....       +..-+.++...-....|+.+++||.|+.+.-...-.-.
T Consensus       200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l  279 (1188)
T COG3523         200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSL  279 (1188)
T ss_pred             HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhcc
Confidence            1221122   2336669999999986543333221       22235555544444688999999999998644321111


Q ss_pred             --HHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          281 --EQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       281 --~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                        ..-.+..|.  .|+..+....+.-..
T Consensus       280 ~~~~r~qvwG~--tf~~~~~~~~~~~~~  305 (1188)
T COG3523         280 NKEEREQVWGV--TFPLDARRNANLAAE  305 (1188)
T ss_pred             CHHHHhhhcee--ccccccccccchHHH
Confidence              111223343  477777766444333

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.67  E-value=0.00042  Score=63.01  Aligned_cols=155  Identities=15%  Similarity=0.231  Sum_probs=82.1

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeee-----------------eecCCCCce---------------------eeeEEE
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVA-----------------AVSRKTNTT---------------------THEVLG  180 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~-----------------~~~~~~~~t---------------------~~~~~~  180 (322)
                      ..+|+++|.-.+|||||+--|+.....                 ..+....+.                     .-.+..
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            469999999999999998766532110                 011110000                     001111


Q ss_pred             EEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcE
Q 020714          181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR  260 (322)
Q Consensus       181 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~  260 (322)
                      ++.....-++|+|.+|.+.+...--       |-   .--...|..++++-+..+.-....      +.++..-.-.+|+
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTv-------FG---MTGH~PDf~MLMiGaNaGIiGmTK------EHLgLALaL~VPV  276 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTV-------FG---MTGHMPDFTMLMIGANAGIIGMTK------EHLGLALALHVPV  276 (641)
T ss_pred             eccccceeEEEEeccchhhhhheee-------ec---cccCCCCceEEEecccccceeccH------HhhhhhhhhcCcE
Confidence            2222234578999999875532100       00   001233777777766443211111      1122222225789


Q ss_pred             EEEEeCCCCCCChhHHHHHH---HHHhcC-------------------------CCCCcEEEeecCCCCCHHHHHHHH
Q 020714          261 VLCMNKVDLVTKKKDLLKVA---EQFKHL-------------------------PGYERIFMTSGLKGAGLKALTQYL  310 (322)
Q Consensus       261 ivV~NK~Dl~~~~~~~~~~~---~~~~~~-------------------------~~~~~~~~iSa~~g~gi~el~~~i  310 (322)
                      .+|.+|+|+.+.. .+++..   ..+.+.                         ....|+|.+|-.+|+|++-|...+
T Consensus       277 fvVVTKIDMCPAN-iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL  353 (641)
T KOG0463|consen  277 FVVVTKIDMCPAN-ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL  353 (641)
T ss_pred             EEEEEeeccCcHH-HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence            9999999998753 222211   111111                         112378999999999998776554

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.64  E-value=0.00028  Score=58.67  Aligned_cols=58  Identities=26%  Similarity=0.348  Sum_probs=39.1

Q ss_pred             cEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714          224 EVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL  286 (322)
Q Consensus       224 d~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~  286 (322)
                      |++++|+|+..+.+..+..+.+.+. +...   ++|+|+|+||+|+.+. .....+...+...
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~-l~~~---~kp~IlVlNK~DL~~~-~~l~~~~~~~~~~   58 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVL-QAGG---NKKLVLVLNKIDLVPK-ENVEKWLKYLRRE   58 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHH-hccC---CCCEEEEEehhhcCCH-HHHHHHHHHHHhh
Confidence            7899999998776666555544432 2222   4689999999999764 4455556666544

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.61  E-value=0.00018  Score=62.88  Aligned_cols=129  Identities=16%  Similarity=0.200  Sum_probs=70.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeee---ecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCC-CCChhhH--
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA---VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKS-GYSHKDV--  209 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~-~~~~~~~--  209 (322)
                      -.++|+-||.+|.|||||++.|.+-.+..   ....+++........+...+  ..++++||.|+..--. .-+...+  
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            46899999999999999999998765432   12222222222222222223  3578999999974322 1111222  


Q ss_pred             --HHHHHHHHh----------hc--ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          210 --KVRVESAWS----------AV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       210 --~~~~~~~~~----------~~--~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                        ...|...+.          .+  ...++++|++..+.+.-..- .+ -.++.+..    .+.+|-|+-|.|-...
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKsl-DL-vtmk~Lds----kVNIIPvIAKaDtisK  191 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSL-DL-VTMKKLDS----KVNIIPVIAKADTISK  191 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHH-HH-HHHHHHhh----hhhhHHHHHHhhhhhH
Confidence              222332222          22  44578888888765432211 11 11222221    2448888999997764

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.54  E-value=0.00036  Score=59.78  Aligned_cols=45  Identities=24%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~  270 (322)
                      ..+|.+|+|+|.+...-.-...+.++-.+++     -+++.+|+||+|-.
T Consensus       154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg-----~k~i~~V~NKv~e~  198 (255)
T COG3640         154 EGVDLVIVVVDPSYKSLRTAERIKELAEELG-----IKRIFVVLNKVDEE  198 (255)
T ss_pred             cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC-----CceEEEEEeeccch
Confidence            6679999999997543332234445555555     24699999999954

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=0.00038  Score=63.90  Aligned_cols=156  Identities=19%  Similarity=0.215  Sum_probs=91.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCe------------------------------eeeecCCCCceeeeEEEEEeeC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK------------------------------VAAVSRKTNTTTHEVLGVMTKA  185 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~------------------------------~~~~~~~~~~t~~~~~~~~~~~  185 (322)
                      ...+.++.|+|.--+||||+-..+....                              .......-|.|...-..++...
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            3568899999999999999966554200                              0011122244555555556667


Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-------CCcHHHHHHHHHHhcccCCCCC
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQ  258 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-------~~~~~~~~~~l~~~~~~~~~~~  258 (322)
                      ...+.+.|+||.-.+-+            .+..-+..||+-++|+.+..+.       ..+...-..+.+..+.     .
T Consensus       156 ~~~ftiLDApGHk~fv~------------nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv-----~  218 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVP------------NMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV-----K  218 (501)
T ss_pred             ceeEEeeccCcccccch------------hhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc-----c
Confidence            78899999999876543            3345567778888888774321       1111111122222222     2


Q ss_pred             cEEEEEeCCCCCCCh---hHH----HHHHHHHh--cCC--CCCcEEEeecCCCCCHHHHHH
Q 020714          259 KRVLCMNKVDLVTKK---KDL----LKVAEQFK--HLP--GYERIFMTSGLKGAGLKALTQ  308 (322)
Q Consensus       259 p~ivV~NK~Dl~~~~---~~~----~~~~~~~~--~~~--~~~~~~~iSa~~g~gi~el~~  308 (322)
                      ..|+++||+|=....   +..    +.....+.  ..+  ....++++|..+|.++++..+
T Consensus       219 ~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  219 HLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             eEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            389999999965321   111    11111222  112  223579999999999988764

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.47  E-value=0.00034  Score=46.29  Aligned_cols=47  Identities=15%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD  268 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~D  268 (322)
                      .-.+++++++|.|..++-.-+....+.++++.. .+++|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-FPNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-TTTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-cCCCCEEEEEeccC
Confidence            345899999999988777665555666666543 34689999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.001  Score=57.14  Aligned_cols=161  Identities=14%  Similarity=0.184  Sum_probs=88.8

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeee----eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC-CChhhHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVA----AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG-YSHKDVKVRVE  214 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~~~~~~~~~~~  214 (322)
                      .+|.++|.-.+||||+-.-...+..+    -..++...|++..    ...-.++.+||-||+..+... ...+       
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~i----s~sfinf~v~dfPGQ~~~Fd~s~D~e-------   96 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHI----SNSFINFQVWDFPGQMDFFDPSFDYE-------   96 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhh----hhhhcceEEeecCCccccCCCccCHH-------
Confidence            56999999999999998766554322    1122222222211    112356899999999876532 2211       


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH-------HHHHHHHHhcCC
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-------LLKVAEQFKHLP  287 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~-------~~~~~~~~~~~~  287 (322)
                         ..++.+-++++|+|+.+..-+....+...+.+.. ...++..+=+.+.|.|....+..       ..+..+.+++..
T Consensus        97 ---~iF~~~gALifvIDaQddy~eala~L~~~v~ray-kvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~g  172 (347)
T KOG3887|consen   97 ---MIFRGVGALIFVIDAQDDYMEALARLHMTVERAY-KVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAG  172 (347)
T ss_pred             ---HHHhccCeEEEEEechHHHHHHHHHHHHHhhhee-ecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhh
Confidence               2356678999999984322221112222222221 22356667899999998865321       222223333321


Q ss_pred             --CCC-cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          288 --GYE-RIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       288 --~~~-~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                        +.. .++-+|-. ...|-|.|..+++.+..
T Consensus       173 le~v~vsf~LTSIy-DHSIfEAFSkvVQkLip  203 (347)
T KOG3887|consen  173 LEKVQVSFYLTSIY-DHSIFEAFSKVVQKLIP  203 (347)
T ss_pred             hccceEEEEEeeec-chHHHHHHHHHHHHHhh
Confidence              111 24445554 44777777777776654

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.41  E-value=0.0011  Score=62.56  Aligned_cols=120  Identities=13%  Similarity=0.160  Sum_probs=68.9

Q ss_pred             Eee-CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC--------CCcHHHHHHHHHHh-c
Q 020714          182 MTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL--------TSPDSRVIRLIERM-G  251 (322)
Q Consensus       182 ~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~--------~~~~~~~~~~l~~~-~  251 (322)
                      +.. .+..+.++|++|+...            -+.+...+...++||+|++.+.-.        .........+.+.+ .
T Consensus       230 f~~~~~~~~~~~DvGGqr~e------------RkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~  297 (389)
T PF00503_consen  230 FNFSGSRKFRLIDVGGQRSE------------RKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICN  297 (389)
T ss_dssp             EEE-TTEEEEEEEETSSGGG------------GGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHT
T ss_pred             EEeecccccceecCCCCchh------------hhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHh
Confidence            445 7788999999999632            134445678889999999986311        11111222333332 2


Q ss_pred             ccCCCCCcEEEEEeCCCCCCC-----------------h--hHHHH----HHHHHhcCCC------CCcEEEeecCCCCC
Q 020714          252 KQAPPKQKRVLCMNKVDLVTK-----------------K--KDLLK----VAEQFKHLPG------YERIFMTSGLKGAG  302 (322)
Q Consensus       252 ~~~~~~~p~ivV~NK~Dl~~~-----------------~--~~~~~----~~~~~~~~~~------~~~~~~iSa~~g~g  302 (322)
                      .....+.|+|+++||.|+...                 .  ...+.    +...|.....      ..-+..++|.....
T Consensus       298 ~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~  377 (389)
T PF00503_consen  298 NPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTEN  377 (389)
T ss_dssp             SGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHH
T ss_pred             CcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHH
Confidence            333346899999999997521                 0  11122    2222322211      11245788888888


Q ss_pred             HHHHHHHHHHH
Q 020714          303 LKALTQYLMEQ  313 (322)
Q Consensus       303 i~el~~~i~~~  313 (322)
                      +..+|+.+.+.
T Consensus       378 ~~~v~~~v~~~  388 (389)
T PF00503_consen  378 IRKVFNAVKDI  388 (389)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhcCc
Confidence            88888877654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0023  Score=60.12  Aligned_cols=81  Identities=15%  Similarity=0.238  Sum_probs=49.9

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      .+.++.|+||+|......     .+...+.. +......|.|++|-.+--+ ++.-..+...-+.+.....|..-.-+++
T Consensus       465 ~gfDVvLiDTAGR~~~~~-----~lm~~l~k-~~~~~~pd~i~~vgealvg-~dsv~q~~~fn~al~~~~~~r~id~~~l  537 (587)
T KOG0781|consen  465 QGFDVVLIDTAGRMHNNA-----PLMTSLAK-LIKVNKPDLILFVGEALVG-NDSVDQLKKFNRALADHSTPRLIDGILL  537 (587)
T ss_pred             cCCCEEEEeccccccCCh-----hHHHHHHH-HHhcCCCceEEEehhhhhC-cHHHHHHHHHHHHHhcCCCccccceEEE
Confidence            467899999999875433     12222222 2345777999999877433 2222344444455555544444567999


Q ss_pred             eCCCCCCC
Q 020714          265 NKVDLVTK  272 (322)
Q Consensus       265 NK~Dl~~~  272 (322)
                      +|+|-++.
T Consensus       538 tk~dtv~d  545 (587)
T KOG0781|consen  538 TKFDTVDD  545 (587)
T ss_pred             Eeccchhh
Confidence            99998764

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.29  E-value=0.0015  Score=60.06  Aligned_cols=83  Identities=20%  Similarity=0.185  Sum_probs=59.0

Q ss_pred             HHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCC
Q 020714          210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY  289 (322)
Q Consensus       210 ~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~  289 (322)
                      .+........+..+|+||.|+|+.++.+.--..+.+++....    .++..|+|+||+|+++. ++.+.+..++...++.
T Consensus       134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~----gnKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~~pt  208 (435)
T KOG2484|consen  134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAH----GNKKLILVLNKIDLVPR-EVVEKWLVYLRREGPT  208 (435)
T ss_pred             HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhcc----CCceEEEEeehhccCCH-HHHHHHHHHHHhhCCc
Confidence            344555555677889999999998877665555555554333    24669999999999885 7788999999887654


Q ss_pred             CcEEEeecC
Q 020714          290 ERIFMTSGL  298 (322)
Q Consensus       290 ~~~~~iSa~  298 (322)
                      . +|..|..
T Consensus       209 v-~fkast~  216 (435)
T KOG2484|consen  209 V-AFKASTQ  216 (435)
T ss_pred             c-eeecccc
Confidence            3 4444443

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.23  E-value=0.0037  Score=49.94  Aligned_cols=101  Identities=17%  Similarity=0.170  Sum_probs=55.5

Q ss_pred             EEEcCCCCchhHHHHHHh------CCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          143 GIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       143 ~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ..-|.+|+||||+.-.+.      +..+..+...++...         -..++.++|||+....              ..
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~---------~~yd~VIiD~p~~~~~--------------~~   60 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN---------LDYDYIIIDTGAGISD--------------NV   60 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC---------CCCCEEEEECCCCCCH--------------HH
Confidence            345689999999965443      222333332221111         1167899999975421              11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~  270 (322)
                      ...+..+|.++++++.+... .  ......++.+... ....++.+|+|+++-.
T Consensus        61 ~~~l~~aD~vviv~~~~~~s-~--~~~~~~l~~l~~~-~~~~~~~lVvN~~~~~  110 (139)
T cd02038          61 LDFFLAADEVIVVTTPEPTS-I--TDAYALIKKLAKQ-LRVLNFRVVVNRAESP  110 (139)
T ss_pred             HHHHHhCCeEEEEcCCChhH-H--HHHHHHHHHHHHh-cCCCCEEEEEeCCCCH
Confidence            23466779999999884321 1  1222333333221 1234688999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK13695 putative NTPase; Provisional

Probab=97.20  E-value=0.01  Score=49.30  Aligned_cols=82  Identities=12%  Similarity=0.278  Sum_probs=44.3

Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+++  +++|--......+......+..+...   +.|++++.||....       .+...+...... .++.+  
T Consensus        92 ~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~---~~~~i~v~h~~~~~-------~~~~~i~~~~~~-~i~~~--  156 (174)
T PRK13695         92 RALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDS---EKPVIATLHRRSVH-------PFVQEIKSRPGG-RVYEL--  156 (174)
T ss_pred             hccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhC---CCeEEEEECchhhH-------HHHHHHhccCCc-EEEEE--
Confidence            34566776  57884222112223344555554432   46799999985321       122333333333 46666  


Q ss_pred             CCCCCHHHHHHHHHHHhh
Q 020714          298 LKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~  315 (322)
                       +.+|=+++...|.+.++
T Consensus       157 -~~~~r~~~~~~~~~~~~  173 (174)
T PRK13695        157 -TPENRDSLPFEILNRLK  173 (174)
T ss_pred             -cchhhhhHHHHHHHHHh
Confidence             45566788888877654

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.15  E-value=0.0096  Score=49.53  Aligned_cols=67  Identities=15%  Similarity=0.090  Sum_probs=41.1

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      ...++.++|||+...       .       .....+..+|.+++++..+...   ......+++.+...   +.|+.+|+
T Consensus        91 ~~~d~viiDtpp~~~-------~-------~~~~~l~~aD~vliv~~~~~~~---~~~~~~~~~~l~~~---~~~~~vV~  150 (179)
T cd03110          91 EGAELIIIDGPPGIG-------C-------PVIASLTGADAALLVTEPTPSG---LHDLERAVELVRHF---GIPVGVVI  150 (179)
T ss_pred             cCCCEEEEECcCCCc-------H-------HHHHHHHcCCEEEEEecCCccc---HHHHHHHHHHHHHc---CCCEEEEE
Confidence            467899999996542       1       1123346789999999885321   12233333333322   34588999


Q ss_pred             eCCCCCC
Q 020714          265 NKVDLVT  271 (322)
Q Consensus       265 NK~Dl~~  271 (322)
                      ||+|...
T Consensus       151 N~~~~~~  157 (179)
T cd03110         151 NKYDLND  157 (179)
T ss_pred             eCCCCCc
Confidence            9999754

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.13  E-value=0.0038  Score=47.43  Aligned_cols=97  Identities=13%  Similarity=0.191  Sum_probs=52.1

Q ss_pred             EEEEc-CCCCchhHHHHHHhC-------CeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          142 VGIIG-APNAGKSSIINYMVG-------TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       142 v~v~G-~~~vGKStlin~l~~-------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      |+++| ..|+||||+.-.|..       .++.-..-.+.            .+.++.++|||+....             
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~------------~~~D~IIiDtpp~~~~-------------   56 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ------------FGDDYVVVDLGRSLDE-------------   56 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC------------CCCCEEEEeCCCCcCH-------------
Confidence            34444 689999998655432       22222211111            1227899999986421             


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK  266 (322)
                       .....+..+|.++++++.+......-..+..+++..+..  +..++.+|+|+
T Consensus        57 -~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~--~~~~~~lVvNr  106 (106)
T cd03111          57 -VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYS--LPAKIELVLNR  106 (106)
T ss_pred             -HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCC--CcCceEEEecC
Confidence             112335667999999987432211112344444444322  13457788885

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.08  E-value=0.0041  Score=46.77  Aligned_cols=64  Identities=13%  Similarity=0.208  Sum_probs=39.2

Q ss_pred             EEEEc-CCCCchhHHHHHHhCC------eeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          142 VGIIG-APNAGKSSIINYMVGT------KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       142 v~v~G-~~~vGKStlin~l~~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      +++.| ..|+||||+.-.|...      ++..+...+              ..++.++|+|+....              
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~--------------~~d~viiD~p~~~~~--------------   53 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDP--------------QYDYIIIDTPPSLGL--------------   53 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCC--------------CCCEEEEeCcCCCCH--------------
Confidence            56666 6799999987655321      221111111              167899999986421              


Q ss_pred             HHHhhcccccEEEEEEeCC
Q 020714          215 SAWSAVNLFEVLMVVFDVH  233 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s  233 (322)
                      .....+..+|.++++++.+
T Consensus        54 ~~~~~l~~ad~viv~~~~~   72 (104)
T cd02042          54 LTRNALAAADLVLIPVQPS   72 (104)
T ss_pred             HHHHHHHHCCEEEEeccCC
Confidence            1113445679999999874

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.04  E-value=0.012  Score=48.64  Aligned_cols=109  Identities=12%  Similarity=0.078  Sum_probs=56.0

Q ss_pred             EEcCCCCchhHHHHHHh------CCeeeeecCCCC-ceeeeE--------EEEEeeCCccEEEEeCCCcccCCCCCChhh
Q 020714          144 IIGAPNAGKSSIINYMV------GTKVAAVSRKTN-TTTHEV--------LGVMTKADTQICIFDTPGLMLNKSGYSHKD  208 (322)
Q Consensus       144 v~G~~~vGKStlin~l~------~~~~~~~~~~~~-~t~~~~--------~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~  208 (322)
                      .-+..|+||||+.-.|.      |.++..+...+. ......        ......-..++.++||||....       .
T Consensus         5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~-------~   77 (179)
T cd02036           5 TSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER-------G   77 (179)
T ss_pred             eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH-------H
Confidence            34579999999975543      334444433331 111100        0000001127899999975421       1


Q ss_pred             HHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714          209 VKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (322)
Q Consensus       209 ~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~  271 (322)
                             ....+..+|.++++++.+...-   .....+++.+....  .....+|+|+.|...
T Consensus        78 -------~~~~l~~ad~viiv~~~~~~s~---~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~  128 (179)
T cd02036          78 -------FITAIAPADEALLVTTPEISSL---RDADRVKGLLEALG--IKVVGVIVNRVRPDM  128 (179)
T ss_pred             -------HHHHHHhCCcEEEEeCCCcchH---HHHHHHHHHHHHcC--CceEEEEEeCCcccc
Confidence                   1123457799999998854221   12223333333221  124679999998654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.00  E-value=0.0064  Score=44.44  Aligned_cols=69  Identities=12%  Similarity=0.148  Sum_probs=41.8

Q ss_pred             EEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcc
Q 020714          142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN  221 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~  221 (322)
                      +++.|.+|+||||+...+...-..     .+..    .  ...+  ++.++|+||........           ......
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~----v--~~~~--d~iivD~~~~~~~~~~~-----------~~~~~~   57 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-----RGKR----V--LLID--DYVLIDTPPGLGLLVLL-----------CLLALL   57 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-----CCCe----E--EEEC--CEEEEeCCCCccchhhh-----------hhhhhh
Confidence            678899999999998877542110     1100    0  1111  78999999876321100           123345


Q ss_pred             cccEEEEEEeCCC
Q 020714          222 LFEVLMVVFDVHR  234 (322)
Q Consensus       222 ~ad~ii~v~D~s~  234 (322)
                      .+|.++++++...
T Consensus        58 ~~~~vi~v~~~~~   70 (99)
T cd01983          58 AADLVIIVTTPEA   70 (99)
T ss_pred             hCCEEEEecCCch
Confidence            6799999998753

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG1162 Predicted GTPases [General function prediction only]

Probab=96.99  E-value=0.0074  Score=54.07  Aligned_cols=88  Identities=18%  Similarity=0.221  Sum_probs=54.9

Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      .+.|-+++|+.+..+. .....+..+|-.....   +..-++|+||+|+........+.........+. +++.+|++++
T Consensus        78 ~n~d~~iiIvs~~~P~-~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy-~v~~~s~~~~  152 (301)
T COG1162          78 ANNDQAIIVVSLVDPD-FNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGY-PVLFVSAKNG  152 (301)
T ss_pred             cccceEEEEEeccCCC-CCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCe-eEEEecCcCc
Confidence            3346666666664442 2223344455444444   333688899999997644332233333444566 5999999999


Q ss_pred             CCHHHHHHHHHHH
Q 020714          301 AGLKALTQYLMEQ  313 (322)
Q Consensus       301 ~gi~el~~~i~~~  313 (322)
                      .|+++|.+++...
T Consensus       153 ~~~~~l~~~l~~~  165 (301)
T COG1162         153 DGLEELAELLAGK  165 (301)
T ss_pred             ccHHHHHHHhcCC
Confidence            9999999887643

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.99  E-value=0.005  Score=48.03  Aligned_cols=21  Identities=19%  Similarity=0.441  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchhHHHHHHhCC
Q 020714          142 VGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~  162 (322)
                      |++.|+||+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            579999999999999998653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.99  E-value=0.00044  Score=57.33  Aligned_cols=53  Identities=15%  Similarity=0.203  Sum_probs=33.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFD  193 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D  193 (322)
                      .+.-+++.|++||||||++++|+... ...-+...||+....+.  .+|..+.|++
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gE--v~G~dY~Fvs   55 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGE--VDGVDYFFVT   55 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCC--cCCceeEeCC
Confidence            35668899999999999999998766 32223334554433322  3345555444

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=96.95  E-value=0.0033  Score=59.57  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=63.0

Q ss_pred             HHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCC
Q 020714          210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY  289 (322)
Q Consensus       210 ~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~  289 (322)
                      .+..++.|..+..+|+|+.++|+.++.-..-..+..++.....    .+..++++||+||... .....+..+|.+.+  
T Consensus       162 LE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~----~K~~~LLvNKaDLl~~-~qr~aWa~YF~~~n--  234 (562)
T KOG1424|consen  162 LEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDP----SKANVLLVNKADLLPP-EQRVAWAEYFRQNN--  234 (562)
T ss_pred             HHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhcccc----ccceEEEEehhhcCCH-HHHHHHHHHHHhcC--
Confidence            4467888999999999999999988765555566666666553    3558999999999886 34556777776654  


Q ss_pred             CcEEEeecCC
Q 020714          290 ERIFMTSGLK  299 (322)
Q Consensus       290 ~~~~~iSa~~  299 (322)
                      .++++.||..
T Consensus       235 i~~vf~SA~~  244 (562)
T KOG1424|consen  235 IPVVFFSALA  244 (562)
T ss_pred             ceEEEEeccc
Confidence            4699999986

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.94  E-value=0.012  Score=55.07  Aligned_cols=123  Identities=14%  Similarity=0.174  Sum_probs=65.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCC----------------CCceeeeEEE---E---------
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRK----------------TNTTTHEVLG---V---------  181 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~----------------~~~t~~~~~~---~---------  181 (322)
                      ...+..|+++|--|+||||.+-.|.      +.++.-++..                .++.......   .         
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~  176 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE  176 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence            4567889999999999999976553      1222111111                1111111000   0         


Q ss_pred             -EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcE
Q 020714          182 -MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR  260 (322)
Q Consensus       182 -~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~  260 (322)
                       ....+.++.|+||+|-..-     .+.+...+... ...-..|=+++|+|+..+   ++  ....-+.+...-.   -.
T Consensus       177 ~ak~~~~DvvIvDTAGRl~i-----de~Lm~El~~I-k~~~~P~E~llVvDam~G---Qd--A~~~A~aF~e~l~---it  242 (451)
T COG0541         177 KAKEEGYDVVIVDTAGRLHI-----DEELMDELKEI-KEVINPDETLLVVDAMIG---QD--AVNTAKAFNEALG---IT  242 (451)
T ss_pred             HHHHcCCCEEEEeCCCcccc-----cHHHHHHHHHH-HhhcCCCeEEEEEecccc---hH--HHHHHHHHhhhcC---Cc
Confidence             0112458999999997621     12222223322 234556889999999653   22  2223333332211   13


Q ss_pred             EEEEeCCCCCCC
Q 020714          261 VLCMNKVDLVTK  272 (322)
Q Consensus       261 ivV~NK~Dl~~~  272 (322)
                      =+|+||.|....
T Consensus       243 GvIlTKlDGdaR  254 (451)
T COG0541         243 GVILTKLDGDAR  254 (451)
T ss_pred             eEEEEcccCCCc
Confidence            588999998644

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=96.86  E-value=0.003  Score=59.62  Aligned_cols=116  Identities=22%  Similarity=0.261  Sum_probs=66.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCce---------------eeeEEEEE----------------eeC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT---------------THEVLGVM----------------TKA  185 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t---------------~~~~~~~~----------------~~~  185 (322)
                      .+.-++.++..-.-|||||...|..+.-...+...|.+               ...+...+                ...
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            34455677777889999999998754322222222222               11111111                012


Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      +.-+.++|.||...|...            .-..++..|+.++|+|.-++.--+.+.+...  .+..    .+.-++++|
T Consensus        97 ~FLiNLIDSPGHVDFSSE------------VTAALRVTDGALVVVDcv~GvCVQTETVLrQ--A~~E----RIkPvlv~N  158 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSE------------VTAALRVTDGALVVVDCVSGVCVQTETVLRQ--AIAE----RIKPVLVMN  158 (842)
T ss_pred             ceeEEeccCCCcccchhh------------hhheeEeccCcEEEEEccCceEechHHHHHH--HHHh----hccceEEee
Confidence            345689999999977431            1134567799999999866554444433321  1111    122478999


Q ss_pred             CCCCC
Q 020714          266 KVDLV  270 (322)
Q Consensus       266 K~Dl~  270 (322)
                      |.|..
T Consensus       159 K~DRA  163 (842)
T KOG0469|consen  159 KMDRA  163 (842)
T ss_pred             hhhHH
Confidence            99964

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.84  E-value=0.001  Score=56.03  Aligned_cols=40  Identities=20%  Similarity=0.143  Sum_probs=27.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeee
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE  177 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~  177 (322)
                      .+.-++++|++|+|||||+++|....-......+.||+..
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~   42 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP   42 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC
Confidence            3556899999999999999999875322222334555543

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.84  E-value=0.009  Score=55.01  Aligned_cols=98  Identities=20%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                      ...+..+.-+|++|.|+|+.++..-.-..+..+++.    ..+.+-+|+|+|||||++. -+...+...+...++-. .|
T Consensus       205 ~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkk----e~phKHli~vLNKvDLVPt-wvt~~Wv~~lSkeyPTi-Af  278 (572)
T KOG2423|consen  205 GELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKK----EKPHKHLIYVLNKVDLVPT-WVTAKWVRHLSKEYPTI-AF  278 (572)
T ss_pred             HHHHHhhcccceeEEeeeccCCcccccHHHHHHHhh----cCCcceeEEEeeccccccH-HHHHHHHHHHhhhCcce-ee
Confidence            344556688899999999988765543344444444    4456779999999999874 56677777777766543 46


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhc
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      -.|-.+..|=..|++.+.++..-+
T Consensus       279 HAsi~nsfGKgalI~llRQf~kLh  302 (572)
T KOG2423|consen  279 HASINNSFGKGALIQLLRQFAKLH  302 (572)
T ss_pred             ehhhcCccchhHHHHHHHHHHhhc
Confidence            667777778888888877766543

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.80  E-value=0.0085  Score=54.96  Aligned_cols=86  Identities=23%  Similarity=0.316  Sum_probs=62.5

Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                      .+.....+...|+++.|+|+..+.+.....+    ..+..    ..+.++|+||+|+.+. ....++...+....+. ..
T Consensus        25 ~~~~~~~~~~~d~vvevvDar~P~~s~~~~l----~~~v~----~k~~i~vlNK~DL~~~-~~~~~W~~~~~~~~~~-~~   94 (322)
T COG1161          25 KRQLKEVLKSVDVVVEVVDARDPLGTRNPEL----ERIVK----EKPKLLVLNKADLAPK-EVTKKWKKYFKKEEGI-KP   94 (322)
T ss_pred             HHHHHHhcccCCEEEEEEeccccccccCccH----HHHHc----cCCcEEEEehhhcCCH-HHHHHHHHHHHhcCCC-cc
Confidence            3444556788899999999987766655333    33322    2346999999999885 4577888888877655 47


Q ss_pred             EEeecCCCCCHHHHHH
Q 020714          293 FMTSGLKGAGLKALTQ  308 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~  308 (322)
                      +.+|++++.+...+..
T Consensus        95 ~~v~~~~~~~~~~i~~  110 (322)
T COG1161          95 IFVSAKSRQGGKKIRK  110 (322)
T ss_pred             EEEEeecccCccchHH
Confidence            8899998888887774

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.78  E-value=0.0011  Score=51.27  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +|+|.|+||+||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999764

...

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.70  E-value=0.0015  Score=56.04  Aligned_cols=26  Identities=27%  Similarity=0.394  Sum_probs=22.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+..++|+|++|+|||||++.|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            35667889999999999999999754

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.70  E-value=0.026  Score=50.73  Aligned_cols=118  Identities=12%  Similarity=0.126  Sum_probs=70.0

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC------------C
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN------------K  201 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~------------~  201 (322)
                      +...+..+++++|++|.|||++++++...+-....  .+.           ...++..+.+|.--..            .
T Consensus        56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d--~~~-----------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD--EDA-----------ERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC--CCC-----------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            55667788999999999999999999876532211  111           1234555666522100            0


Q ss_pred             CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC----CCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH----LTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (322)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~----~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK  266 (322)
                      +..+...........+..++...+=++|+|--++    .......+..+++.++..  -.+|+|.|+++
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne--L~ipiV~vGt~  189 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE--LQIPIVGVGTR  189 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc--cCCCeEEeccH
Confidence            0111122223333444566777888999996433    222334677788887643  35789988865

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.65  E-value=0.0017  Score=50.81  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCe
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+.+.|++|+|||++++.+....
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999987643

>PHA02518 ParA-like protein; Provisional

Probab=96.60  E-value=0.027  Score=47.92  Aligned_cols=70  Identities=7%  Similarity=0.043  Sum_probs=38.5

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEE
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCM  264 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~  264 (322)
                      ..++.|+||||-..        .      .....+..+|.+|+++..+...-..-..+..++....... ...+ ..++.
T Consensus        76 ~~d~viiD~p~~~~--------~------~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~  140 (211)
T PHA02518         76 GYDYVVVDGAPQDS--------E------LARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT-DGLPKFAFII  140 (211)
T ss_pred             cCCEEEEeCCCCcc--------H------HHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC-CCCceEEEEE
Confidence            46889999998531        1      1123455679999999885322111223444444433221 1233 45777


Q ss_pred             eCCCCC
Q 020714          265 NKVDLV  270 (322)
Q Consensus       265 NK~Dl~  270 (322)
                      |+.+..
T Consensus       141 n~~~~~  146 (211)
T PHA02518        141 SRAIKN  146 (211)
T ss_pred             eccCCc
Confidence            887643

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.60  E-value=0.0017  Score=56.06  Aligned_cols=29  Identities=28%  Similarity=0.508  Sum_probs=23.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeee
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA  165 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~  165 (322)
                      ..+=-++|+|++|+|||||+|.+.+-..+
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~p   57 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKP   57 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            34456899999999999999999775433

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=96.57  E-value=0.0076  Score=57.58  Aligned_cols=158  Identities=13%  Similarity=0.159  Sum_probs=91.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ..++++|||..++|||+|+-+++...+..... +...+.....+......-+.+.|-.| ...      .          
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~kkE~vv~gqs~lLlirdeg~-~~~------a----------   90 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRFKKEVVVDGQSHLLLIRDEGG-HPD------A----------   90 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccC-CcCccceeeEEeeccceEeeeecccC-Cch------h----------
Confidence            45789999999999999998876555433222 22222222222333344556677666 211      0          


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCC--hhHHHH-HHHHHhcCCCCCcEE
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTK--KKDLLK-VAEQFKHLPGYERIF  293 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~--~~~~~~-~~~~~~~~~~~~~~~  293 (322)
                      ......|.+|+||...+..+.  ..+..+-..+... .....|+++++++.=....  +...+. ......+...+ .+|
T Consensus        91 Qft~wvdavIfvf~~~d~~s~--q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krc-sy~  167 (749)
T KOG0705|consen   91 QFCQWVDAVVFVFSVEDEQSF--QAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRC-SYY  167 (749)
T ss_pred             hhhhhccceEEEEEeccccCH--HHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCcc-cee
Confidence            223445888999988654333  2333333333322 2345677888877543322  122222 23334455555 489


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhh
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++++.+|.+++..|+.+...+..
T Consensus       168 et~atyGlnv~rvf~~~~~k~i~  190 (749)
T KOG0705|consen  168 ETCATYGLNVERVFQEVAQKIVQ  190 (749)
T ss_pred             ecchhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999988877654

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.56  E-value=0.0018  Score=56.16  Aligned_cols=27  Identities=30%  Similarity=0.557  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCee
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKV  164 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~  164 (322)
                      .+=-|+++|++|+|||||+|.+.|-..
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            344588999999999999999987543

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.56  E-value=0.0016  Score=54.27  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCe
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .++++|++|+|||||++.|.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            48899999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.54  E-value=0.032  Score=46.09  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=30.7

Q ss_pred             EEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC-CCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH
Q 020714          227 MVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV-DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL  303 (322)
Q Consensus       227 i~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi  303 (322)
                      ++|+|--.+.......+...+..+-.   +++|+|.++-+. +..-        .+.+....+. .++.++..+.+-+
T Consensus        98 liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~~--------l~~i~~~~~~-~i~~vt~~NRd~l  163 (168)
T PF03266_consen   98 LIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNPF--------LEEIKRRPDV-KIFEVTEENRDAL  163 (168)
T ss_dssp             EEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SCC--------HHHHHTTTTS-EEEE--TTTCCCH
T ss_pred             EEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcHH--------HHHHHhCCCc-EEEEeChhHHhhH
Confidence            77788655444443455565555554   356788888887 4221        2334443333 5788876655444

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=96.53  E-value=0.0017  Score=64.83  Aligned_cols=82  Identities=13%  Similarity=0.215  Sum_probs=52.1

Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh-cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA-VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~-~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      ..++++|.||+..-..+-.+..+...++..... +.....+++.+...+    .+....++++..+..+..+...+-|++
T Consensus       132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an----~d~ats~alkiarevDp~g~RTigvit  207 (657)
T KOG0446|consen  132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN----SDIATSPALVVAREVDPGGSRTLEVIT  207 (657)
T ss_pred             chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh----hhhhcCHHHHHHHhhCCCccchhHHhh
Confidence            467899999997665544445555555555443 466677777776633    223333445555544455667899999


Q ss_pred             CCCCCCC
Q 020714          266 KVDLVTK  272 (322)
Q Consensus       266 K~Dl~~~  272 (322)
                      |.|+.+.
T Consensus       208 K~Dlmdk  214 (657)
T KOG0446|consen  208 KFDFMDK  214 (657)
T ss_pred             hHHhhhc
Confidence            9998864

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.52  E-value=0.002  Score=53.30  Aligned_cols=27  Identities=33%  Similarity=0.608  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCee
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKV  164 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~  164 (322)
                      .+-.++|+|++|+|||||+|.+.|-..
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhccC
Confidence            445799999999999999999987443

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.51  E-value=0.0025  Score=43.20  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~  160 (322)
                      ..+|.|++|+||||++.++.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999864

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=96.49  E-value=0.015  Score=50.22  Aligned_cols=105  Identities=8%  Similarity=0.107  Sum_probs=60.7

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      +..+.|+||.|.....        ..      ..+..+|++|+=.-.+.---.+-.....++.+.........|.-++.|
T Consensus        83 ~~d~VlvDleG~as~~--------~~------~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~T  148 (231)
T PF07015_consen   83 GFDFVLVDLEGGASEL--------ND------YAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFT  148 (231)
T ss_pred             CCCEEEEeCCCCCchh--------HH------HHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEe
Confidence            4578999999975211        10      123457888765544221111112555667766655556788999999


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHH
Q 020714          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ  308 (322)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~  308 (322)
                      ++.-..... .......+.+  + .|++.+.-.+...+.+++.
T Consensus       149 r~~~~~~~~-~~~~~~e~~~--~-lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  149 RVPAARLTR-AQRIISEQLE--S-LPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             cCCcchhhH-HHHHHHHHHh--c-CCccccccccHHHHHHHHH
Confidence            998442222 2222333322  2 3688888887777777665

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.42  E-value=0.0033  Score=50.18  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=19.2

Q ss_pred             EEEEcCCCCchhHHHHHHhCC
Q 020714          142 VGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~  162 (322)
                      ++++|++|+|||||++.|.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=96.42  E-value=0.015  Score=49.81  Aligned_cols=67  Identities=15%  Similarity=0.205  Sum_probs=41.5

Q ss_pred             cCCCCCcEEEEEeCCCCCCChh-----------------HHH---H-HHHHHhcCCCCC-c---EEEeecCCCCCHHHHH
Q 020714          253 QAPPKQKRVLCMNKVDLVTKKK-----------------DLL---K-VAEQFKHLPGYE-R---IFMTSGLKGAGLKALT  307 (322)
Q Consensus       253 ~~~~~~p~ivV~NK~Dl~~~~~-----------------~~~---~-~~~~~~~~~~~~-~---~~~iSa~~g~gi~el~  307 (322)
                      ....+.++|+.+||.|+....-                 +..   + +.+-+.+.++.. .   -.++.|..-+||.-+|
T Consensus       262 PWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVF  341 (359)
T KOG0085|consen  262 PWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVF  341 (359)
T ss_pred             ccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHH
Confidence            3445678999999999985421                 111   1 112222322221 1   2457788889999999


Q ss_pred             HHHHHHhhhcCC
Q 020714          308 QYLMEQFKDLGL  319 (322)
Q Consensus       308 ~~i~~~l~~~~~  319 (322)
                      ..+.+.+....+
T Consensus       342 aaVkDtiLq~~L  353 (359)
T KOG0085|consen  342 AAVKDTILQLNL  353 (359)
T ss_pred             HHHHHHHHHhhh
Confidence            999888776554

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.35  E-value=0.0031  Score=49.91  Aligned_cols=27  Identities=26%  Similarity=0.465  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCee
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKV  164 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~  164 (322)
                      .+-.++|+|++|+|||||++.|.+...
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CCCEEEEEccCCCccccceeeeccccc
Confidence            455689999999999999999988653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.30  E-value=0.039  Score=43.19  Aligned_cols=24  Identities=17%  Similarity=0.407  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ...+++.|++|+|||++++.+...
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999998764

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK07261 topology modulation protein; Provisional

Probab=96.28  E-value=0.0034  Score=52.10  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      +|+|+|+||+|||||...|..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=96.25  E-value=0.024  Score=52.58  Aligned_cols=26  Identities=27%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHh
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      ......+++++|+.++|||||...|.
T Consensus        69 ~~~~~~~vmvvG~vDSGKSTLt~~La   94 (398)
T COG1341          69 SAGKVGVVMVVGPVDSGKSTLTTYLA   94 (398)
T ss_pred             hccCCcEEEEECCcCcCHHHHHHHHH
Confidence            34567889999999999999975554

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.24  E-value=0.0046  Score=52.68  Aligned_cols=25  Identities=20%  Similarity=0.484  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+..++++|++|+|||||++.|.+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4556899999999999999999875

>TIGR00235 udk uridine kinase

Probab=96.23  E-value=0.0038  Score=53.42  Aligned_cols=26  Identities=23%  Similarity=0.486  Sum_probs=22.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +.+..|+|+|++|+|||||++.|.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999998753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.23  E-value=0.0036  Score=49.88  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=18.3

Q ss_pred             EEEEcCCCCchhHHHHHHhC
Q 020714          142 VGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~  161 (322)
                      |+++|+||+||||++..|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

...

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.21  E-value=0.0045  Score=43.05  Aligned_cols=21  Identities=24%  Similarity=0.518  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchhHHHHHHhCC
Q 020714          142 VGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~  162 (322)
                      +++.|.+|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999998754

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK08118 topology modulation protein; Reviewed

Probab=96.20  E-value=0.0041  Score=51.42  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      +|+|+|+||+|||||...|..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.19  E-value=0.0031  Score=51.76  Aligned_cols=22  Identities=27%  Similarity=0.611  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            5899999999999999999754

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.17  E-value=0.0042  Score=51.90  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +|+|+|+||+||||+...|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999765

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.17  E-value=0.0047  Score=52.53  Aligned_cols=28  Identities=32%  Similarity=0.531  Sum_probs=23.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCee
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV  164 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~  164 (322)
                      ..+=.++++|++|+|||||+.++-+-+.
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence            3455689999999999999999876553

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.16  E-value=0.0062  Score=51.20  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=22.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+-.++++|++|+|||||++.|.+.
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34567999999999999999998864

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.11  E-value=0.0044  Score=48.17  Aligned_cols=21  Identities=33%  Similarity=0.680  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchhHHHHHHhCC
Q 020714          142 VGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~  162 (322)
                      |+|.|.|||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988754

...

>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]

Probab=96.09  E-value=0.06  Score=49.08  Aligned_cols=27  Identities=22%  Similarity=0.438  Sum_probs=23.0

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +...+.++++||+.++||||+...|++
T Consensus        99 ~~~~GPrv~vVGp~d~GKsTl~r~L~n  125 (415)
T KOG2749|consen   99 ESSYGPRVMVVGPTDVGKSTLCRILLN  125 (415)
T ss_pred             hhccCCEEEEECCCccchHHHHHHHHH
Confidence            445688999999999999999887763

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.08  E-value=0.012  Score=51.13  Aligned_cols=27  Identities=37%  Similarity=0.689  Sum_probs=23.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..++..++|.|++|+|||||++.|.+.
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~   56 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEAL   56 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999999988753

>PRK08233 hypothetical protein; Provisional

Probab=96.02  E-value=0.0061  Score=50.68  Aligned_cols=24  Identities=13%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +..|+|.|.||+|||||.+.|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            467899999999999999998753

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.01  E-value=0.0056  Score=52.41  Aligned_cols=26  Identities=23%  Similarity=0.563  Sum_probs=22.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .++..|+|+|.+|+|||||++.|.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45788999999999999999988753

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.94  E-value=0.0064  Score=51.09  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .++|+|++|+|||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999664

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.92  E-value=0.19  Score=42.73  Aligned_cols=21  Identities=19%  Similarity=0.414  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      -|.+.|+||+||||+.+-|..
T Consensus         3 LiIlTGyPgsGKTtfakeLak   23 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAK   23 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHH
Confidence            378999999999999987753

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=95.89  E-value=0.095  Score=44.91  Aligned_cols=48  Identities=10%  Similarity=-0.008  Sum_probs=26.4

Q ss_pred             cccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714          222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (322)
Q Consensus       222 ~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~  270 (322)
                      .||.++++++.+...-..-..+.++++.+.... ......+|.|+.+..
T Consensus       141 ~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~-~~~~~gvv~N~~~~~  188 (212)
T cd02117         141 KADEIYIVTSGEFMALYAANNICKGIRKYAKSG-GVRLGGLICNSRNTD  188 (212)
T ss_pred             cCcEEEEEecccHHHHHHHHHHHHHHHHhCccc-CCcEEEEEEeCCCCc
Confidence            578888888764321111124455566654321 112245999999954

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.87  E-value=0.0066  Score=50.55  Aligned_cols=22  Identities=23%  Similarity=0.594  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .++|+|++|+||||+++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.86  E-value=0.0075  Score=50.35  Aligned_cols=27  Identities=22%  Similarity=0.589  Sum_probs=23.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.+..
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            345678999999999999999998854

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=95.86  E-value=0.057  Score=47.07  Aligned_cols=70  Identities=9%  Similarity=-0.019  Sum_probs=38.8

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      ++.++.|+||||...       .       .....+..+|.+|+.+..+...-..-......+........++.|..++.
T Consensus        82 ~~yD~iiID~pp~~~-------~-------~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~  147 (231)
T PRK13849         82 QGFDYALADTHGGSS-------E-------LNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILR  147 (231)
T ss_pred             CCCCEEEEeCCCCcc-------H-------HHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence            357899999999652       1       11233456799988887632111111123233333322223356778999


Q ss_pred             eCCC
Q 020714          265 NKVD  268 (322)
Q Consensus       265 NK~D  268 (322)
                      |.++
T Consensus       148 ~~~~  151 (231)
T PRK13849        148 QRVP  151 (231)
T ss_pred             Eecc
Confidence            9987

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.85  E-value=0.0078  Score=46.81  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..++++|+||+||||++..+...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~   25 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARE   25 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc
Confidence            46899999999999999998764

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.83  E-value=0.0073  Score=51.73  Aligned_cols=25  Identities=20%  Similarity=0.498  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+ .++++|++|+|||||++.+.|..
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            35 79999999999999999998753

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=95.79  E-value=0.0064  Score=51.56  Aligned_cols=21  Identities=24%  Similarity=0.635  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchhHHHHHHhCC
Q 020714          142 VGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~  162 (322)
                      |+++|++|+|||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.79  E-value=0.0089  Score=49.56  Aligned_cols=25  Identities=12%  Similarity=0.263  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ....++|+|++|+|||||++++...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            3457899999999999999998753

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=0.053  Score=47.00  Aligned_cols=122  Identities=11%  Similarity=0.022  Sum_probs=62.8

Q ss_pred             eEEEEEcCCCC--chhHHHHHHhCCeeeeecCCCC-ceeeeEEEEEeeCCccEEEEeCCCcc-cCCCCCChhhHHHHHHH
Q 020714          140 VAVGIIGAPNA--GKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDVKVRVES  215 (322)
Q Consensus       140 ~~v~v~G~~~v--GKStlin~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~~~~~~~~~~  215 (322)
                      ..++++|.+||  ||-+++.+|....+...+.... +..+.+..--.+....+.+.=.+-.. .+.+             
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lp-------------   71 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLP-------------   71 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccC-------------
Confidence            46789999999  9999999998776543332222 22222221111111122222222111 1111             


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHH
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK  278 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~  278 (322)
                      ..........+++|||.+...+.  ..+..|+.........  -.++++||+|.+++.-...+
T Consensus        72 n~~~a~pl~a~vmvfdlse~s~l--~alqdwl~htdinsfd--illcignkvdrvphhlahde  130 (418)
T KOG4273|consen   72 NAEIAEPLQAFVMVFDLSEKSGL--DALQDWLPHTDINSFD--ILLCIGNKVDRVPHHLAHDE  130 (418)
T ss_pred             CcccccceeeEEEEEeccchhhh--HHHHhhccccccccch--hheecccccccccchhhhhH
Confidence            11112233678899999653222  3455666543333221  25789999999876443333

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.78  E-value=0.0088  Score=49.87  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=21.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+-.++++|++|+|||||++.++.
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhh
Confidence            4566799999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=95.78  E-value=0.0076  Score=49.42  Aligned_cols=20  Identities=25%  Similarity=0.625  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchhHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~  160 (322)
                      +|++.|.||+||||+.+.|.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH
Confidence            68999999999999999886

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.73  E-value=0.0094  Score=51.01  Aligned_cols=27  Identities=30%  Similarity=0.466  Sum_probs=23.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            345578999999999999999998854

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.73  E-value=0.0079  Score=48.16  Aligned_cols=21  Identities=29%  Similarity=0.699  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|+|+|+.|+|||||+..|.+
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~   22 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLIN   22 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.72  E-value=0.0094  Score=51.30  Aligned_cols=27  Identities=33%  Similarity=0.598  Sum_probs=23.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            345578999999999999999998854

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=95.72  E-value=0.064  Score=47.66  Aligned_cols=63  Identities=22%  Similarity=0.259  Sum_probs=40.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCee-eeecCCC-CceeeeEEEEE---eeCCccEEEEeCCCccc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV-AAVSRKT-NTTTHEVLGVM---TKADTQICIFDTPGLML  199 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~-~~~~~~~-~~t~~~~~~~~---~~~~~~~~l~DtpG~~~  199 (322)
                      .....|.|+|+..+|||.|+|.|++... ..++... ..|...+.-..   ...+..+.++||.|+..
T Consensus        19 ~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~   86 (260)
T PF02263_consen   19 QPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD   86 (260)
T ss_dssp             SBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred             CCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence            4456788999999999999999987432 1233222 33433322111   11345789999999976

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.71  E-value=0.009  Score=50.28  Aligned_cols=26  Identities=27%  Similarity=0.485  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|++|+|||||++.+.|..
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44568999999999999999998754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.71  E-value=0.008  Score=55.04  Aligned_cols=24  Identities=25%  Similarity=0.529  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCe
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      =-++++|++|+|||||++.+.|-.
T Consensus        30 ef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          30 EFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            347799999999999999998754

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.71  E-value=0.0095  Score=51.20  Aligned_cols=27  Identities=30%  Similarity=0.540  Sum_probs=23.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|..
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345578999999999999999998853

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.70  E-value=0.0097  Score=45.16  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCchhHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~  160 (322)
                      .-.++++|++|+|||||++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4568999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.68  E-value=0.0099  Score=51.84  Aligned_cols=27  Identities=30%  Similarity=0.612  Sum_probs=22.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          24 RRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345568999999999999999998753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.68  E-value=0.0098  Score=49.71  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~  160 (322)
                      ..|+++|+||+||||+++.|.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999999987

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	322
1x18_X	292	Contact Sites Of Era Gtpase On The Thermus Thermoph		2e-10
1ega_A	301	Crystal Structure Of A Widely Conserved Gtpase Era		2e-10
3r9w_A	307	Crystal Structure Of Era In Complex With Mggdpnp An		2e-09
3iev_A	308	Crystal Structure Of Era In Complex With Mggnp And		2e-09
1wf3_A	301	Crystal Structure Of Gtp-Binding Protein Tt1341 Fro		2e-09
4dcs_A	456	Crystal Structure Of B. Subtilis Enga In Complex Wi		2e-06
4dcs_A	456	Crystal Structure Of B. Subtilis Enga In Complex Wi		4e-04
2hjg_A	436	The Crystal Structure Of The B. Subtilis Yphc Gtpas		2e-05
2hjg_A	436	The Crystal Structure Of The B. Subtilis Yphc Gtpas		5e-04
3a1t_A	258	Crystal Structue Of The Cytosolic Domain Of T. Mari		2e-04
1mky_A	439	Structural Analysis Of The Domain Interactions In D		7e-04
3a1w_A	168	Crystal Structue Of The G Domain Of T. Maritima Feo		9e-04

>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 292

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           + I+G PN GKS+++N ++G K++  SRK  TT H ++G+ T+   Q    DTPGL + +
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255
                K    R+ +  ++ ++ +V +V+F V     +PD  ++    R GK AP
Sbjct: 68  -----KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGK-AP 115

>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era Length = 301

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           + I+G PN GKS+++N ++G K++  SRK  TT H ++G+ T+   Q    DTPGL + +
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70
Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255
                K    R+ +  ++ ++ +V +V+F V     +PD  ++    R GK AP
Sbjct: 71  -----KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGK-AP 118

>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And Nucleotides 1506- 1542 Of 16s Ribosomal Rna Length = 307

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 35/190 (18%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM-TKADTQICIFDTPGLMLN 200
           V I+G PN GKS+++N ++GTKV+ +S K  TT   VLGV     + QI   DTPG+   
Sbjct: 12  VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 201 KSG--YSHKDVKVRVESAWSAVNLFEVLMVVFD-----------VHRHLTSPDSR-VIRL 246
           K      H  V++  +S   A    +V++ + D           ++++   P ++ VI +
Sbjct: 72  KKSDVLGHSMVEIAKQSLEEA----DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 127
Query: 247 IERMGKQAPPKQKRVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKAL 306
           I ++ K  P   K VL +                E  K  P    I   S LKGA L  L
Sbjct: 128 INKIDKIGP--AKNVLPL--------------IDEIHKKHPELTEIVPISALKGANLDEL 171
Query: 307 TQYLMEQFKD 316
            + +++   +
Sbjct: 172 VKTILKYLPE 181

>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3' End Of 16s Rrna Length = 308

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 35/190 (18%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM-TKADTQICIFDTPGLMLN 200
           V I+G PN GKS+++N ++GTKV+ +S K  TT   VLGV     + QI   DTPG+   
Sbjct: 13  VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 201 KSG--YSHKDVKVRVESAWSAVNLFEVLMVVFD-----------VHRHLTSPDSR-VIRL 246
           K      H  V++  +S   A    +V++ + D           ++++   P ++ VI +
Sbjct: 73  KKSDVLGHSMVEIAKQSLEEA----DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 128
Query: 247 IERMGKQAPPKQKRVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKAL 306
           I ++ K  P   K VL +                E  K  P    I   S LKGA L  L
Sbjct: 129 INKIDKIGP--AKNVLPL--------------IDEIHKKHPELTEIVPISALKGANLDEL 172
Query: 307 TQYLMEQFKD 316
            + +++   +
Sbjct: 173 VKTILKYLPE 182

>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From Thermus Thermophilus Hb8 Length = 301

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           V I+G PN GKS+++N ++G KVA +S +  TT   + G++T+   QI   DTPGL
Sbjct: 10  VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65

>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Sulfate Ion And Gdp Length = 456

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
           +IG PN GKSS++N M+G +   VS    TT   V    T    +  I DT G+      
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 259
Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           Y   + K  V  A  A++  EV+ VV D    +   D R+       GK
Sbjct: 260 YETTE-KYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGK 307

>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Sulfate Ion And Gdp Length = 456

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKS+I N + G +++ V      T   +       +    + DT G+ +  
Sbjct: 26  VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85
Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
             +     ++R + A  A++  +V++ + +    +T+ D  V +++ R       K+  V
Sbjct: 86  EPFL---AQIR-QQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT------KKPVV 135
Query: 262 LCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317
           L +N                 F  L G+   +  SG  G GL  L   + E FK++
Sbjct: 136 LAVNKLDNTEMRANIY----DFYSL-GFGEPYPISGTHGLGLGDLLDAVAEHFKNI 186

>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In Complex With Gdp Length = 436

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
           +IG PN GKSS++N  +G +   VS    TT   V    T    +  I DT G       
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRKKGKV 239
Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           Y   + K  V  A  A++  EV+ VV D    +   D R+       GK
Sbjct: 240 YETTE-KYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGK 287

>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In Complex With Gdp Length = 436

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 15/176 (8%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKS+I N + G +++ V      T   +       +    + DT G+ +  
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65
Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
             +     ++R + A  A +  +V++   +    +T+ D  V +++ R       K+  V
Sbjct: 66  EPFL---AQIR-QQAEIAXDEADVIIFXVNGREGVTAADEEVAKILYRT------KKPVV 115
Query: 262 LCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317
           L +N                 F  L G+   +  SG  G GL  L   + E FK++
Sbjct: 116 LAVNKLDNTEXRANIY----DFYSL-GFGEPYPISGTHGLGLGDLLDAVAEHFKNI 166

>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form Ii Length = 258

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 15/173 (8%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199
           V V + G PN GK+S+ N + GTK   V+     T  +  GV T     I + D PG   
Sbjct: 6   VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTY- 63
Query: 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK 259
              GYS  D K+  +         +++++V D      +P+  +  L+E +  +    +K
Sbjct: 64  -SLGYSSIDEKIARDYLLKGDA--DLVILVADS----VNPEQSLYLLLEILEME----KK 112
Query: 260 RVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
            +L M                E  KHL G   +F TS + G GL+ L + ++E
Sbjct: 113 VILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVF-TSSVTGEGLEELKEKIVE 163

>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A Switch Protein Containing Two Gtpase Domains Length = 439

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198
           ++ V I+G PN GKS++ N ++  + A VS    TT   V   +     +    DT GL 
Sbjct: 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 239
Query: 199 LNK-------SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG 251
                       YS+  V   +E A       +V+++V D  + +T  D R   L ER G
Sbjct: 240 RKSRVEPRTVEKYSNYRVVDSIEKA-------DVVVIVLDATQGITRQDQRXAGLXERRG 292
Query: 252 KQA 254
           + +
Sbjct: 293 RAS 295

>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron Iransporter Length = 168

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 15/173 (8%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199
           V V + G PN GK+S+ N + GTK   V+     T  +  GV T     I + D PG   
Sbjct: 6   VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTY- 63
Query: 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK 259
              GYS  D K+  +         +++++V D      +P+  +  L+E +  +    +K
Sbjct: 64  -SLGYSSIDEKIARDYLLKGDA--DLVILVADS----VNPEQSLYLLLEILEME----KK 112
Query: 260 RVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
            +L M                E  KHL G   +F TS + G GL+ L + ++E
Sbjct: 113 VILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVF-TSSVTGEGLEELKEKIVE 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	1e-34
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	5e-33
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	1e-30
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	1e-26
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	2e-17
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	8e-06
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	3e-16
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	4e-06
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	1e-14
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	2e-14
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	3e-14
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	3e-13
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	5e-12
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	5e-12
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	5e-12
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	1e-11
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	1e-10
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	3e-10
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	4e-10
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	2e-08
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	3e-08
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	4e-08
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	1e-07
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	1e-07
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	1e-06
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	4e-06
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	7e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-05
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	3e-05
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	4e-05
2wji_A	165	Ferrous iron transport protein B homolog; membrane	6e-05
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	1e-04
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	1e-04
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-04
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	2e-04
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-04
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-04
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	6e-04
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	7e-04
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	8e-04
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	8e-04
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	8e-04
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	9e-04

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301

 Score =  127 bits (321), Expect = 1e-34
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIF 192
             +      + I+G PN GKS+++N ++G K++  SRK  TT H ++G+ T+   Q    
Sbjct: 2   SIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV 61

Query: 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           DTPGL +          ++  ++A S++   E+++ V +  R  T  D  V+  +     
Sbjct: 62  DTPGLHME---EKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREG-- 115

Query: 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
               K   +L +NKVD V +K DLL   +       +  I   S   G  +  +   + +
Sbjct: 116 ----KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRK 171

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score =  122 bits (309), Expect = 5e-33
 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 19/184 (10%)

Query: 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFD 193
            E   S  V I+G PN GKS+++N ++G KVA +S +  TT   + G++T+   QI   D
Sbjct: 2   AEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVD 61

Query: 194 TPGLMLNKSGYSHKDV----KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249
           TPGL        HK +    +   +  + A+     ++ V D+    T  D  V R +  
Sbjct: 62  TPGL--------HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARAL-- 111

Query: 250 MGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQY 309
             K    K   +L  NK+D     ++ +   + +  L       M S L    +  L   
Sbjct: 112 --KPLVGKVPILLVGNKLDAAKYPEEAM---KAYHELLPEAEPRMLSALDERQVAELKAD 166

Query: 310 LMEQ 313
           L+  
Sbjct: 167 LLAL 170

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score =  116 bits (293), Expect = 1e-30
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 13/186 (6%)

Query: 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQI 189
                  K   V I+G PN GKS+++N ++GTKV+ +S K  TT   VLGV     + QI
Sbjct: 2   HHHHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQI 61

Query: 190 CIFDTPGLMLNKSGYSHKDV--KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI 247
              DTPG+   K      DV     VE A  ++   +V++ + D        D  +    
Sbjct: 62  IFLDTPGIYEPK----KSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEI---Y 114

Query: 248 ERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF-KHLPGYERIFMTSGLKGAGLKAL 306
           +   K     +  ++ +NK+D +   K++L + ++  K  P    I   S LKGA L  L
Sbjct: 115 QNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDEL 172

Query: 307 TQYLME 312
            + +++
Sbjct: 173 VKTILK 178

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score =  107 bits (269), Expect = 1e-26
 Identities = 42/212 (19%), Positives = 81/212 (38%), Gaps = 24/212 (11%)

Query: 108 RKHRALAKALLQAALERQEEEEEEVKE-EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166
             H   +  + + +   ++     ++  +      + + G  N GKSS +N +VG  V+ 
Sbjct: 2   HHHHHSSGLVPRGSHMLEDPRRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSI 61

Query: 167 VSRKTNTTTHEVLGVM-TKADTQICIFDTPGLMLNKSGYSHKD---VKVRVESAWSAVNL 222
           VS    TTT  V   M       + + DTPGL               ++RVE A      
Sbjct: 62  VSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL--------DDVGELGRLRVEKARRVFYR 113

Query: 223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ 282
            +  ++V D        +  V+ L + M          V+ +NK+D++ +K + L   + 
Sbjct: 114 ADCGILVTDSAPTPY--EDDVVNLFKEMEI------PFVVVVNKIDVLGEKAEEL---KG 162

Query: 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
                   ++ + S L+  G   + + + E  
Sbjct: 163 LYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 81.4 bits (202), Expect = 2e-17
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 30/205 (14%)

Query: 117 LLQAALER--QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT 174
           +L+  +++  ++  + E K E   ++ V I+G PN GKS++ N ++  + A VS    TT
Sbjct: 156 MLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTT 215

Query: 175 THEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES--------AWSAVNLFEVL 226
              V   +     +    DT GL         +  +V   +           ++   +V+
Sbjct: 216 RDPVDDEVFIDGRKYVFVDTAGL--------RRKSRVEPRTVEKYSNYRVVDSIEKADVV 267

Query: 227 MVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK-----VAE 281
           ++V D  + +T  D R+  L+ER G+ +      V+  NK DLV  ++           E
Sbjct: 268 VIVLDATQGITRQDQRMAGLMERRGRAS------VVVFNKWDLVVHREKRYDEFTKLFRE 321

Query: 282 QFKHLPGYERIFMTSGLKGAGLKAL 306
           +   +     IF TS  KG  +  +
Sbjct: 322 KLYFIDYSPLIF-TSADKGWNIDRM 345

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 30/184 (16%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---------ADTQICIF 192
           V I+G PN GKS++ N +V  K A V         +  GV T+               + 
Sbjct: 4   VLIVGRPNVGKSTLFNKLVKKKKAIV--------EDEEGV-TRDPVQDTVEWYGKTFKLV 54

Query: 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           DT G+  N      + +K    +     +L  VL VV D  R +T  D  +   + +   
Sbjct: 55  DTCGVFDNPQDIISQKMKEVTLNMIREADL--VLFVV-DGKRGITKEDESLADFLRKSTV 111

Query: 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
                   +L  NK +    ++   +V  +   L G+      S      L  + + +++
Sbjct: 112 ------DTILVANKAE--NLREFEREVKPELYSL-GFGEPIPVSAEHNINLDTMLETIIK 162

Query: 313 QFKD 316
           + ++
Sbjct: 163 KLEE 166

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 77.9 bits (193), Expect = 3e-16
 Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 29/217 (13%)

Query: 117 LLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH 176
           LL A  E  +   E    E+       +IG PN GKSS++N M+G +   VS    TT  
Sbjct: 155 LLDAVAEHFKNIPETKYNEEVIQFC--LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRD 212

Query: 177 EVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR-------VESAWSAVNLFEVLMVV 229
            V    T    +  I DT G+         K  KV        V  A  A++  EV+ VV
Sbjct: 213 AVDTSFTYNQQEFVIVDTAGMR--------KKGKVYETTEKYSVLRALKAIDRSEVVAVV 264

Query: 230 FDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK-----VAEQFK 284
            D    +   D R+       GK        V+ +NK D V K +  +K     + + F+
Sbjct: 265 LDGEEGIIEQDKRIAGYAHEAGKAV------VIVVNKWDAVDKDESTMKEFEENIRDHFQ 318

Query: 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLKI 321
            L     +F  S L    +  L   +++  ++  L++
Sbjct: 319 FLDYAPILF-MSALTKKRIHTLMPAIIKASENHSLRV 354

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 33/184 (17%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---------ADTQICIF 192
           V I+G PN GKS+I N + G +++ V         +  GV T+          +    + 
Sbjct: 6   VAIVGRPNVGKSTIFNRIAGERISIV--------EDTPGV-TRDRIYSSAEWLNYDFNLI 56

Query: 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           DT G+ +    +     ++R + A  A++  +V++ + +    +T+ D  V +++ R  K
Sbjct: 57  DTGGIDIGDEPF---LAQIR-QQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKK 112

Query: 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
                   VL +NK+D      ++      F  L G+   +  SG  G GL  L   + E
Sbjct: 113 ------PVVLAVNKLD----NTEMRANIYDFYSL-GFGEPYPISGTHGLGLGDLLDAVAE 161

Query: 313 QFKD 316
            FK+
Sbjct: 162 HFKN 165

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 108 RKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV 167
            +     +    A  E+  E   ++K++D  S+ V ++G    GKSS +N ++G +V  V
Sbjct: 5   VREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV 64

Query: 168 SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES--AWSAVNLFEV 225
           S         V+   T     I I DTPG  L ++GY +      ++       +++  +
Sbjct: 65  SPFQAEGLRPVMVSRTMGGFTINIIDTPG--LVEAGYVNHQALELIKGFLVNRTIDVL-L 121

Query: 226 LMVVFDVHRHLTSPDSRVIRLI-ERMGKQAPPKQKRVLCMNKVDLVTK 272
            +   DV+  +   D +V+  I +  GK+     K +L +        
Sbjct: 122 YVDRLDVYA-VDELDKQVVIAITQTFGKEI--WCKTLLVLTHAQFSPP 166

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 70.7 bits (173), Expect = 2e-14
 Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 12/176 (6%)

Query: 104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163
           +++  +  +       A   +  E    +K+ED  S+ + ++G    GKSS +N ++G +
Sbjct: 4   QQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63

Query: 164 VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF 223
           V ++S   +     V+   ++A   + I DTPG  L + GY +      ++S      + 
Sbjct: 64  VVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPG--LIEGGYINDMALNIIKSFLLDKTID 121

Query: 224 EVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLK 278
            +L V       + + D  V + I    GK            NK  +         
Sbjct: 122 VLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI---------WNKAIVALTHAQFSP 168

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 72.0 bits (176), Expect = 3e-14
 Identities = 41/264 (15%), Positives = 75/264 (28%), Gaps = 43/264 (16%)

Query: 73  EPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEV 132
            P  DE     +    + ++   G+ +I  +E        +    +Q          + +
Sbjct: 7   SPKSDENNDLPSSFTGYFKKFNTGR-KIISQEILNLIELRMRAGNIQLTNSA---ISDAL 62

Query: 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV----AAVSRKTNTTTHEVLGVMTKADTQ 188
           KE D   + V + G   +GKSS IN + G       AA +     T  E           
Sbjct: 63  KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPN 121

Query: 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248
           +  +D PG+                ++    +  +E    +          D  + + I 
Sbjct: 122 VVFWDLPGIG---------STNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS 172

Query: 249 RMGKQAPPKQKRVLCMNKVDLV--TKKKDLLKVAEQFKHL---------------PGYER 291
            M K      +      KVD     +     +  ++ K L                    
Sbjct: 173 MMKK------EFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPP 226

Query: 292 IFMTSG--LKGAGLKALTQYLMEQ 313
           IF+ S   +       L   L+  
Sbjct: 227 IFLLSNKNVCHYDFPVLMDKLISD 250

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 44/236 (18%)

Query: 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS------VAVGIIGAPNAGKSS 154
           F EE+ E      ++  L   +E    E   + +  Q        V+  I G PNAGKS+
Sbjct: 193 FSEEDVE----FQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKST 248

Query: 155 IINYMVGTKVAAVSRKTNT--TTHEVL-------GVMTKADTQICIFDTPGLMLNKSGYS 205
           ++N ++G + A V   ++   TT + +         M        + DT GL   ++   
Sbjct: 249 LLNTLLGQERAIV---SHMPGTTRDYIEECFIHDKTM------FRLTDTAGL--REA--- 294

Query: 206 HKDV--KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263
             +      +  +   +   ++++ + D+       +   IR +    K A P  K +  
Sbjct: 295 -GEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIREL----KAAHPAAKFLTV 349

Query: 264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL 319
            NK+D       L++             +   S L G G+  L Q++ +  K+L  
Sbjct: 350 ANKLDRAANADALIRAIADGTGTE----VIGISALNGDGIDTLKQHMGDLVKNLDK 401

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 65.3 bits (160), Expect = 5e-12
 Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 43/191 (22%)

Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--TTHEVL-------GVMTKADTQIC 190
           + + I+G PN GKS+++N ++    A V   T+   TT +V+       G++        
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIV---TDIPGTTRDVISEEIVIRGIL------FR 294

Query: 191 IFDTPGLMLNKSGYSHKDVKVRVES-----AWSAVNLFEVLMVVFDVHRHLTSPDSRVIR 245
           I DT G+          +    VE          +   ++++ V D    L   D +++ 
Sbjct: 295 IVDTAGV--------RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE 346

Query: 246 LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305
            I          ++ ++ +NKVD+V K    +   E    L     +   S LKG GL+ 
Sbjct: 347 RI--------KNKRYLVVINKVDVVEK----INEEEIKNKLGTDRHMVKISALKGEGLEK 394

Query: 306 LTQYLMEQFKD 316
           L + +  + ++
Sbjct: 395 LEESIYRETQE 405

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 65.2 bits (160), Expect = 5e-12
 Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 66/239 (27%)

Query: 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS------VAVGIIGAPNAGKSS 154
           F+E+        L    + + +E    E  ++     K       + V I+G PN GKSS
Sbjct: 185 FEEDLPP-----LDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSS 239

Query: 155 IINYMVGTKVAAVSRKTNT--TTHEVL-------GVMTKADTQICIFDTPGLMLNKSGYS 205
           ++N    +  A V   T+   TT +V+       G+       + + DT G+        
Sbjct: 240 LLNAWSQSDRAIV---TDLPGTTRDVVESQLVVGGIP------VQVLDTAGI-------- 282

Query: 206 HKDVKVR----------VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255
                 R          VE +  A N  +++++  D     T+ D  +   +        
Sbjct: 283 ------RETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV-------- 328

Query: 256 PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
             +  +L MNK+DLV K     ++    ++     +I  T+  +  G+ +L   ++E  
Sbjct: 329 KHRPLILVMNKIDLVEK-----QLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIV 382

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 62.2 bits (152), Expect = 5e-12
 Identities = 40/189 (21%), Positives = 66/189 (34%), Gaps = 47/189 (24%)

Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT---HEVL---GVMTKADTQICIFD 193
           + V I G PNAGKSS++N + G + A V+    TT     E +   G+       + I D
Sbjct: 5   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP------LHIID 58

Query: 194 TPGLMLNKSGYSHKDVKVR----------VESAWSAVNLFEVLMVVFDVHRHLTSPDSRV 243
           T GL              R          +E AW  +   + ++ + D         +  
Sbjct: 59  TAGL--------------REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAE- 103

Query: 244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303
             +      + P K    +  NK D+  +             + G+  I   S   G G+
Sbjct: 104 --IWPEFIARLPAKLPITVVRNKADITGET-------LGMSEVNGHALIR-LSARTGEGV 153

Query: 304 KALTQYLME 312
             L  +L +
Sbjct: 154 DVLRNHLKQ 162

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 14/199 (7%)

Query: 122 LERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV 181
           L +  E  +++   D +   V I G PN GKS+++  +   K   ++    TT    +G 
Sbjct: 150 LNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQ 208

Query: 182 MTKADTQICIFDTPGLM---LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS 238
                 +  I DTPGL+   +++     K   + +        L  +++ +FD   H   
Sbjct: 209 FEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL------RYLGNLIIYIFDPSEHCGF 262

Query: 239 PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298
           P    I L E +  +       ++ +NK+D+    ++ +K  E+F    G   I + S L
Sbjct: 263 PLEEQIHLFEEVHGEFKDL-PFLVVINKIDVAD--EENIKRLEKFVKEKGLNPIKI-SAL 318

Query: 299 KGAGLKALTQYLMEQFKDL 317
           KG G+  + + +++  + L
Sbjct: 319 KGTGIDLVKEEIIKTLRPL 337

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 33/187 (17%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           + + GAPN GKSS +N +    V  V   + TT +  +G       +  I DTPGL    
Sbjct: 32  IILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGL---- 86

Query: 202 SGYSHKDVKVRVESAWSAVNLFE------------VLMVVFDVHRHLTSPDSRVIRLIER 249
                      ++ A+   N  E            V++ + D+           I L   
Sbjct: 87  -----------LDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYS 135

Query: 250 MGKQAPPKQKRVLCMNKVDLVT----KKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305
           +      K   V+  NK+D          + L + +   ++    +    S L G G++ 
Sbjct: 136 IKSVFSNK-SIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQ 194

Query: 306 LTQYLME 312
                 E
Sbjct: 195 AKITACE 201

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 109 KHRALAKALLQAALE--RQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166
            +      ++ A+ E  +++ +    K    +++   IIG PN GKS++IN +    +A 
Sbjct: 88  VNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAK 147

Query: 167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
              +   TT +      K   ++ + DTPG++  K
Sbjct: 148 TGDRPGITTSQQW---VKVGKELELLDTPGILWPK 179

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 42/199 (21%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH----EVLGVMTKADTQICIFDTPGL 197
           +   G  N GKS++I  + G K     ++   T      E             I D PG 
Sbjct: 4   IIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWKNHK--------IIDMPGF 54

Query: 198 MLNKSGYSHKDVKVR-----VESAWSAVNLFEVLMVVFDVHRH------------LTSPD 240
                    K+V+ R     V          +V ++V D  +                 D
Sbjct: 55  GFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDG-KAAPEIIKRWEKRGEIPID 111

Query: 241 SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERIFMTSG 297
               + +  +    P     ++ +NK+D +   ++++    +   +P     +     S 
Sbjct: 112 VEFYQFLRELDI--PT----IVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISA 165

Query: 298 LKGAGLKALTQYLMEQFKD 316
             G  ++ L   + E  ++
Sbjct: 166 KFGDNIERLKNRIFEVIRE 184

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMV 160
            +   EE     +   L+ AA      +  E     ++   V ++G  N GKS+ IN ++
Sbjct: 124 MRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRII 183

Query: 161 G-----TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK 210
                   V   S    TT   +       ++   ++DTPG++ +       D +
Sbjct: 184 EEATGKGNVITTSYFPGTTLDMIE---IPLESGATLYDTPGIINHHQMAHFVDAR 235

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 15/70 (21%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------DTQICI 191
           +   V I+G PN GKS+IIN + G + ++V  +         G+ TK       +  + I
Sbjct: 98  RLARVLIVGVPNTGKSTIINKLKGKRASSVGAQP--------GI-TKGIQWFSLENGVKI 148

Query: 192 FDTPGLMLNK 201
            DTPG++   
Sbjct: 149 LDTPGILYKN 158

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 44/219 (20%), Positives = 83/219 (37%), Gaps = 57/219 (26%)

Query: 125 QEEEEEEVKEEDQKSVA-VGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------TTTH 176
           +  +E  +  E  K +A VG++G P+ GKS+++        + VS           TT  
Sbjct: 144 EPGKERYIVLE-LKVLADVGLVGFPSVGKSTLL--------SVVSSAKPKIADYHFTTLV 194

Query: 177 EVLGVMTKADTQICIF-DTPGLMLNKSGYSHKDVKVRVESAWSAVNL---F-------EV 225
             LG++   D +  +  D PGL               +E A   V L   F        V
Sbjct: 195 PNLGMVETDDGRSFVMADLPGL---------------IEGAHQGVGLGHQFLRHIERTRV 239

Query: 226 LMVVFDVHRHLTSPDSR----VIRLIERMGKQAPPK---QKRVLCMNKVDLVTKKKDLLK 278
           ++ V D+    +  + R        I +   +   +   + +++  NK+D+    ++L  
Sbjct: 240 IVHVIDM----SGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEA 295

Query: 279 VAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317
             E+      Y  +F  S +   GL+ L   +  Q ++ 
Sbjct: 296 FKEKLTD--DYP-VFPISAVTREGLRELLFEVANQLENT 331

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 52/220 (23%), Positives = 83/220 (37%), Gaps = 69/220 (31%)

Query: 128 EEEEVKEEDQKSVA-VGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------TTTHEVL 179
           E+  ++ E    +A VG++G PNAGKSS++        AA++R          TT    L
Sbjct: 146 EKRRLRLE-LMLIADVGLVGYPNAGKSSLL--------AAMTRAHPKIAPYPFTTLSPNL 196

Query: 180 GVMTKADTQICIF-DTPGLMLNKSGYSHKDVKVRVESAWSAVNL---F-------EVLMV 228
           GV+  ++ +     D PG+               +E A     L   F        VL+ 
Sbjct: 197 GVVEVSEEERFTLADIPGI---------------IEGASEGKGLGLEFLRHIARTRVLLY 241

Query: 229 VFDVHRHLTSP--DSRVIR---------LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL 277
           V D       P      +R         L+ R           ++ +NKVDL+ ++  + 
Sbjct: 242 VLDAA---DEPLKTLETLRKEVGAYDPALLRR---------PSLVALNKVDLLEEEA-VK 288

Query: 278 KVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317
            +A+      G   +   S L GAGL AL + L    +  
Sbjct: 289 ALADALARE-GLA-VLPVSALTGAGLPALKEALHALVRST 326

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 123 ERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV-LGV 181
               +     +E     + + ++G   AGKS+  N ++G KV        + T +     
Sbjct: 13  NLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS 72

Query: 182 MTKADTQICIFDTPGLMLNKSGYSHKDV-KVRVESAWSAVNLFEVLMVVFDVHRHLTSPD 240
            +  +T++ + DTPG  +  +   + +  K  +            L++V  + R  T  +
Sbjct: 73  SSWKETELVVVDTPG--IFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEE 129

Query: 241 SRVIRLIERM-GKQA 254
            +    I +M G++A
Sbjct: 130 HKATEKILKMFGERA 144

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 12/128 (9%)

Query: 91  EEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEE-EEVKEEDQKSVAVGIIGAPN 149
           +  +  K++ +     ++         L +A + Q   E  +  E  +    V ++G  N
Sbjct: 111 KSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTN 170

Query: 150 AGKSSIINYMVGT------KVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKS 202
            GKS+ IN M+         V   S    TT    L ++    D +  ++DTPG++ +  
Sbjct: 171 VGKSTFINRMIKEFSDETENVITTSHFPGTT----LDLIDIPLDEESSLYDTPGIINHHQ 226

Query: 203 GYSHKDVK 210
              +   +
Sbjct: 227 MAHYVGKQ 234

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 9e-07
 Identities = 45/351 (12%), Positives = 113/351 (32%), Gaps = 90/351 (25%)

Query: 42  TENDCDSVFDS------SYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQK 95
           ++ + D +  S      +     T+   Q     K  E      Y+     I   E+ Q 
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT-EQRQP 105

Query: 96  GKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKE---EDQKSVAVGIIGAPNAGK 152
             +     E+ +R +    +   +  + R  +   ++++   E + +  V I G   +GK
Sbjct: 106 SMMTRMYIEQRDRLYND-NQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 153 SSIINYMVGTKVAAVSRKTNTTTH---EV----LGVMTKADTQICIFDTPGLMLNKSGYS 205
           + +           V            ++    L      +T + +       ++ +  S
Sbjct: 164 TWV--------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 206 HKD----VKVRVESAWSAVNLF-------EVLMVV-----------FDVH-RHL-TSPDS 241
             D    +K+R+ S  + +            L+V+           F++  + L T+   
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 242 RVIRLI----------ERMGKQAPPKQKRVLCMNKVDLVTKKKDL---------LKVA-- 280
           +V   +          +       P + + L +  +D   + +DL          +++  
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLSII 333

Query: 281 -----------EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ-FKDLGL 319
                      + +KH+   ++  +T+ ++ + L  L      + F  L +
Sbjct: 334 AESIRDGLATWDNWKHV-NCDK--LTTIIE-SSLNVLEPAEYRKMFDRLSV 380

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKSS+ N ++  + A V+     T     GV+     +  + DT GL    
Sbjct: 4   VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                 + K++ E    A+   EV++   D    LT  D  V   + R GK        +
Sbjct: 64  K----WEKKIQ-EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGK------PVI 112

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
           L   KVD     K  L +      L G+     TS     GL+ L + + E+ 
Sbjct: 113 LVATKVD---DPKHELYLGP-LYGL-GFGDPIPTSSEHARGLEELLEAIWERL 160

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 123 ERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM 182
                   + +   +  + + ++G    GKS+  N ++  +       + T T       
Sbjct: 6   HSHWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ 65

Query: 183 TKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS-AVNLFEVLMVVFDVHRHLTSPD 240
                 +I I DTP   +       + +   V+  +  +     VL++V  + R+ TS D
Sbjct: 66  GSWGNREIVIIDTPD--MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRY-TSQD 122

Query: 241 SRVIRLIERM 250
            +  + ++ +
Sbjct: 123 QQAAQRVKEI 132

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 10/75 (13%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 70  KKQEP----TWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQ 125
             QEP     W E+ R+R   +    +  + + R   +++ E  ++  ++ + +  +  +
Sbjct: 80  LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139

Query: 126 EEEEEEVKEEDQKSV 140
             ++   ++ D   +
Sbjct: 140 IADKAFYQQPDADII 154

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 43/197 (21%), Positives = 71/197 (36%), Gaps = 57/197 (28%)

Query: 142 VGIIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADTQICIFDT 194
             +IG PN GK+++ N +     +V       V +KT        G     +  I I D 
Sbjct: 4   ALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKT--------GEFLLGEHLIEITDL 55

Query: 195 PG---LMLNKSGYSHKDVKVRVESAWSAVN--LFE---VLMVVFDV-----HRHLTSPDS 241
           PG   L+ N  G S +D ++       A    +      ++ V D      H +LT    
Sbjct: 56  PGVYSLVANAEGIS-QDEQI-------AAQSVIDLEYDCIINVIDACHLERHLYLT---- 103

Query: 242 RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERIFMTSGL 298
              +L E +GK        V+ +N +D+   +    D  K+            +      
Sbjct: 104 --SQLFE-LGK------PVVVALNMMDIAEHRGISIDTEKLESLLG-CS----VIPIQAH 149

Query: 299 KGAGLKALTQYLMEQFK 315
           K  G+ AL Q L+   +
Sbjct: 150 KNIGIPALQQSLLHCSQ 166

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 36/190 (18%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSR---KTNTTTHEVLGVMTKADTQICIFDTPGLM 198
           V  +G  N GKSS++N +   K+A VS+   KT +    ++      +++    D PG  
Sbjct: 26  VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV------NSKYYFVDLPGY- 78

Query: 199 LNKSGYSHKDVKVRVESAWSAV---------NLFEVLMVVFDVHRHLTSPDSRVIRLIER 249
               GY+    K R+   W  +         +L  V ++V D        D  ++  ++ 
Sbjct: 79  ----GYAKVSKKERML--WKRLVEDYFKNRWSLQMVFLLV-DGRIPPQDSDLMMVEWMKS 131

Query: 250 MGKQAPPKQKRVLCMNKVDLVTK---KKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306
           +    P      + + K+D V      K L +  + F     Y  I  TS + G G+  L
Sbjct: 132 LNI--PF----TIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT-IIPTSSVTGEGISEL 184

Query: 307 TQYLMEQFKD 316
              +    K+
Sbjct: 185 LDLISTLLKE 194

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165

 Score = 41.7 bits (99), Expect = 6e-05
 Identities = 45/204 (22%), Positives = 77/204 (37%), Gaps = 65/204 (31%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADTQIC 190
           KS  + +IG PN GKS+I N + G    +       V +K         G       +  
Sbjct: 2   KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKE--------GEFEYNGEKFK 53

Query: 191 IFDTPGLMLNKSGYSHKDVKVRVESAWS-----AVN--LFE---VLMVVFD---VHRHL- 236
           + D PG+      YS         +A S     A +  + E   +++ + D   + R+L 
Sbjct: 54  VVDLPGV------YSL--------TANSIDEIIARDYIINEKPDLVVNIVDATALERNLY 99

Query: 237 -TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERI 292
            T       +L+E MG         +L +NK+DL        D+ K+ +    +     +
Sbjct: 100 LTL------QLME-MGA------NLLLALNKMDLAKSLGIEIDVDKLEKILG-VK----V 141

Query: 293 FMTSGLKGAGLKALTQYLMEQFKD 316
              S  K  G++ L + +    KD
Sbjct: 142 VPLSAAKKMGIEELKKAISIAVKD 165

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 45/207 (21%), Positives = 77/207 (37%), Gaps = 65/207 (31%)

Query: 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADT 187
              KS  + +IG PN GKS+I N + G    +       V +K         G       
Sbjct: 3   SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKE--------GEFEYNGE 54

Query: 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWS-----AVN--LFE---VLMVVFD---VHR 234
           +  + D PG+      YS         +A S     A +  + E   +++ + D   + R
Sbjct: 55  KFKVVDLPGV------YSL--------TANSIDEIIARDYIINEKPDLVVNIVDATALER 100

Query: 235 HL--TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGY 289
           +L  T       +L+E MG         +L +NK+DL        D+ K+ +    +   
Sbjct: 101 NLYLTL------QLME-MGA------NLLLALNKMDLAKSLGIEIDVDKLEKILG-VK-- 144

Query: 290 ERIFMTSGLKGAGLKALTQYLMEQFKD 316
             +   S  K  G++ L + +    KD
Sbjct: 145 --VVPLSAAKKMGIEELKKAISIAVKD 169

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMV--- 160
           E    + + LA+ LLQ  L     E+E+  +    +  VG+ G P AGKS+ I Y     
Sbjct: 40  ESTHSRKKELAQVLLQKVLL-YHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98

Query: 161 ---GTKVA 165
              G K++
Sbjct: 99  TERGHKLS 106

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 13/144 (9%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH-EVLGVMTKADTQICIFDTPGLMLNKS 202
           ++G   +GKSSI   +        +    +T       +   +     I+D PG M    
Sbjct: 25  LMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD 84

Query: 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262
                ++  R             L+ V D         +R+   + +  K  P     V 
Sbjct: 85  PTFDYEMIFR---------GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135

Query: 263 CMNKVDLVT--KKKDLLKVAEQFK 284
            ++KVD ++   K +  +   Q  
Sbjct: 136 -IHKVDGLSDDHKIETQRDIHQRA 158

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 38/186 (20%)

Query: 149 NAGKSSIINYMVGTK-VAAVSR---KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY 204
           NAGKSS +N +   K +A  S+   +T       +           + D PG      GY
Sbjct: 36  NAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV------ADGKRLVDLPGY-----GY 84

Query: 205 SHKDVKVRVESAWSAV---------NLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQA 254
           +    +++    W            +L  +++++ D+ RH L   D ++I          
Sbjct: 85  AEVPEEMK--RKWQRALGEYLEKRQSLQGLVVLM-DI-RHPLKDLDQQMIEWAVDSNIAV 140

Query: 255 PPKQKRVLCMNKVDLVTK---KKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLM 311
                 ++ + K D +     K  L  V E      G  ++   S LK  G+  L Q L 
Sbjct: 141 ------LVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194

Query: 312 EQFKDL 317
             F ++
Sbjct: 195 TWFSEM 200

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 19/188 (10%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH-EVLGVMTKADTQICIFDTPGLMLN 200
           + ++G   +GKSS+ + +     A  +R+   T   E   +    +  + ++D  G  + 
Sbjct: 6   LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65

Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR 260
              Y  K      +         +VL+ VFDV       D  +     +  ++  P  K 
Sbjct: 66  MENYFTKQKDHIFQMV-------QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKI 118

Query: 261 VLCMNKVDLVT--KKKDLLKVAEQF------KHLPGYERIFMTSGLKGAGLKA---LTQY 309
            + ++K+DLV   K+++L ++  +       +        F TS    +  KA   +   
Sbjct: 119 FVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCS 178

Query: 310 LMEQFKDL 317
           L+    + 
Sbjct: 179 LIPNMSNH 186

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 43/196 (21%)

Query: 144 IIGAPNAGKSSIINYM-----VGTKVAAVSRKTNTTT-------HEVLGVMTKADTQICI 191
             G   +GK++ + ++      G K   VS  T              +G +    T+  +
Sbjct: 19  YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHL 78

Query: 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFE---VLMVVFDVHRHLTSPDSRVIRLIE 248
           +  PG             +V   ++     +      ++ V D   +    ++  +R + 
Sbjct: 79  YTVPG-------------QVFYNASRK--LILRGVDGIVFVADSAPNRLRANAESMRNMR 123

Query: 249 RMGKQAPPKQKRVLCM---NKVDLVTKKKDLLKVAE--QFKHLPGYERIFMTSGLKGAG- 302
               +       V  +   NK DL     D L V          G   +      +G G 
Sbjct: 124 ENLAEYGLTLDDVPIVIQVNKRDL----PDALPVEMVRAVVDPEGKFPVLEAVATEGKGV 179

Query: 303 ---LKALTQYLMEQFK 315
              LK +++ ++ +  
Sbjct: 180 FETLKEVSRLVLARVA 195

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 110 HRALAKAL------LQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMV--- 160
             ALA+A+               +  + V  +  +++ VGI G P  GKS+ I+ +    
Sbjct: 20  RAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79

Query: 161 ---GTKVA 165
              G KVA
Sbjct: 80  TAAGHKVA 87

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 261 VLCMNKVDLVTKKKDLLKVAEQFKHLP--GYERIFMTSGLKGAGLKALTQYL 310
           ++C+ K+DL+  +     +    +     GY  +++TS      L  +  + 
Sbjct: 121 IICITKMDLIEDQDTEDTIQAYAEDYRNIGY-DVYLTSSKDQDSLADIIPHF 171

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 31/190 (16%), Positives = 65/190 (34%), Gaps = 30/190 (15%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
           ++G    GKSSI   +V   +  +      +T             + + + PG       
Sbjct: 4   LMGVRRCGKSSICK-VVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPG------- 55

Query: 204 YSHKDVKVRVESAWSAVNLFE---VLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR 260
               +     E ++ +  LF+    L+ V D      +  + +  +IE   K  P     
Sbjct: 56  --QLNYF---EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIE 110

Query: 261 VLCMNKVDLVTK----------KKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA---LT 307
           VL ++KVD +++           +   +   +          ++TS    +  +A   + 
Sbjct: 111 VL-IHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIV 169

Query: 308 QYLMEQFKDL 317
           Q L+ +   L
Sbjct: 170 QKLIPELSFL 179

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 49/188 (26%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADTQIC 190
           K + +G+IG PN+GK+++ N + G+  +V       V RK         G  +  D Q+ 
Sbjct: 2   KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKE--------GQFSTTDHQVT 53

Query: 191 IFDTPGLMLNKSGYS---HKDVKVRVESAWSAVNLFE---VLMVVFD---VHRHLTSPDS 241
           + D PG       YS           E       L     +L+ V D   + R+L     
Sbjct: 54  LVDLPGT------YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL----Y 103

Query: 242 RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERIFMTSGL 298
             ++L+E +G         ++ +N +D+  K+    ++  ++ +    P    +      
Sbjct: 104 LTLQLLE-LGI------PCIVALNMLDIAEKQNIRIEIDALSARLG-CP----VIPLVST 151

Query: 299 KGAGLKAL 306
           +G G++AL
Sbjct: 152 RGRGIEAL 159

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 61/201 (30%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGT--KVA-----AVSRKTNTTTHEVLGVMTKADTQIC 190
             V V + G PN GK+S+ N + GT   VA      V +K         GV T     I 
Sbjct: 4   HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKE--------GVFTYKGYTIN 55

Query: 191 IFDTPG---LMLNKSGYSHKDVKVRVESAWSAVN--LFE---VLMVVFD---VHRHL--T 237
           + D PG   L       S  D K+       A +  L     ++++V D     + L   
Sbjct: 56  LIDLPGTYSL----GYSS-IDEKI-------ARDYLLKGDADLVILVADSVNPEQSLYLL 103

Query: 238 SPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERIFM 294
                 + ++E M K      K +L M  +D   K     D  ++ +    +P    +  
Sbjct: 104 ------LEILE-MEK------KVILAMTAIDEAKKTGMKIDRYELQKHLG-IP----VVF 145

Query: 295 TSGLKGAGLKALTQYLMEQFK 315
           TS + G GL+ L + ++E  +
Sbjct: 146 TSSVTGEGLEELKEKIVEYAQ 166

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 50/186 (26%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT------------HEVLGVMTKADTQ- 188
           V + G  + GK+S I Y++  +V         TT              V G     D + 
Sbjct: 68  VLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEK 127

Query: 189 ----------------------------ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220
                                       I I DTPG++        +         W A 
Sbjct: 128 PFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA- 186

Query: 221 NLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV 279
              ++++++FD H+   S + S  I  +           K  + +NK D+V   + L++V
Sbjct: 187 ERVDLIILLFDAHKLEISDEFSEAIGALRGHED------KIRVVLNKADMVE-TQQLMRV 239

Query: 280 AEQFKH 285
                 
Sbjct: 240 YGALMW 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.92
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.91
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.91
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.91
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.91
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.91
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.9
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.9
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.9
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.9
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.9
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.9
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.9
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.9
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.9
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.9
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.9
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.9
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.9
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.9
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.9
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.89
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.89
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.89
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.89
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.89
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.89
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.89
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.89
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.89
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.89
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.89
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.89
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.89
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.89
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.89
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.89
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.89
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.89
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.89
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.89
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.89
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.89
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.89
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.89
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.89
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.89
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.89
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.89
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.89
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.89
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.88
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.88
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.88
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.88
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.88
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.88
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.88
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.88
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.88
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.88
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.88
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.88
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.88
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.88
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.88
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.88
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.88
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.88
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.88
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.88
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.88
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.88
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.88
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.88
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.88
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.87
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.87
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.87
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.87
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.87
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.87
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.87
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.87
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.87
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.87
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.87
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.87
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.87
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.87
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.87
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.87
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.87
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.87
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.87
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.87
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.87
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.86
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.86
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.86
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.86
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.86
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.86
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.86
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.85
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.85
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.85
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.85
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.84
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.84
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.84
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.74
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.84
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.84
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.79
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.79
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.79
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.79
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.77
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.77
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.77
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.76
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.76
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.76
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.76
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.76
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.76
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.75
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.75
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.75
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.75
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.75
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.74
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.74
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.74
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.74
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.74
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.73
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.72
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.72
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.72
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.71
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.7
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.7
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.7
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.7
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.7
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.69
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.69
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.69
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.69
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.68
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.68
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.68
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.67
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.67
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.66
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.66
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.64
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.63
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.63
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.62
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.62
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.62
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.6
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.6
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.6
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.6
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.57
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.57
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.56
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.54
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.54
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.53
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.51
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.49
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.46
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.46
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.43
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.43
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.39
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.37
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.36
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.34
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.34
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.3
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.27
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.27
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.16
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.15
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.13
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.11
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.01
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.98
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.97
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.96
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.91
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.9
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.9
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.89
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.85
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.73
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.72
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.67
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.55
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.53
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.52
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.52
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.36
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.28
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.22
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.22
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.15
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.11
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.08
2xxa_A	433	Signal recognition particle protein; protein trans	97.98
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.98
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.83
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.81
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.79
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.77
2og2_A	359	Putative signal recognition particle receptor; nuc	97.77
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.7
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.49
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.35
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.2
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.19
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.17
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.05
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.68
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.66
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.63
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.52
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.48
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.47
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.42
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.38
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.37
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.36
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.31
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.31
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.29
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.24
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.22
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.21
3end_A	307	Light-independent protochlorophyllide reductase ir	96.2
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.11
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.1
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.1
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.1
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.05
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.02
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.01
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.96
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.95
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.95
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.94
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.94
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.93
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.93
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.93
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.93
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.92
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.91
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.9
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.89
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.88
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.88
1g6h_A	257	High-affinity branched-chain amino acid transport	95.87
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.85
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.85
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.83
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.83
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.83
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.82
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.81
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.81
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.8
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.8
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.79
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.79
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.78
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.78
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.77
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.77
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.77
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.76
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.76
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.75
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.74
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.74
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.72
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.72
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.71
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.71
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.71
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.7
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.66
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.66
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.64
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.64
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.61
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.61
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.6
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.58
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.57
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.57
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.54
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.53
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.52
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.51
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.5
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.5
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.5
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.47
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.45
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.44
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.44
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.43
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.42
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.4
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.4
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.37
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.37
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.35
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.32
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.32
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.32
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.31
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.3
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.29
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.28
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.28
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.27
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.26
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.26
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.23
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.2
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.18
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.17
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.17
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.16
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.15
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.15
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.14
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.14
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.13
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.09
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.08
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.07
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.06
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.03
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.01
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.0
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.0
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.99
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	94.98
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	94.98
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.97
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.97
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.97
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.96
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.93
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.92
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.91
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.9
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	94.89
2vli_A	183	Antibiotic resistance protein; transferase, tunica	94.88
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.86
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	94.85
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.84
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.81
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	94.8
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	94.79
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.78
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	94.73
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.72
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.68
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.67
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	94.63
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.63
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.63
1via_A	175	Shikimate kinase; structural genomics, transferase	94.59
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.56
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.54
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	94.51
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.51
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.51
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.5
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.48
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.48
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.46
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.45
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.43
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.43
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.42
1p9r_A	418	General secretion pathway protein E; bacterial typ	94.38
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.33
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	94.31
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.3
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	94.24
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.24
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	94.22
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.2
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.18
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.18
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	94.15
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.13
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.1
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.09
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	93.97
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	93.97
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.93
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.89
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.89
2cvh_A	220	DNA repair and recombination protein RADB; filamen	93.84
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.84
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	93.79
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.78
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	93.76
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.76
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	93.75
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	93.71
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	93.66
3bos_A	242	Putative DNA replication factor; P-loop containing	93.64
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	93.64
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	93.63
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	93.63
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	93.58
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	93.56
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	93.55
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	93.54
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	93.52
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	93.51
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	93.5
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	93.45
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	93.43
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	93.43
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	93.39
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.3
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.29
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	93.21
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.11
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.02
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	92.97
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.91
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	92.9
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	92.86
2chg_A	226	Replication factor C small subunit; DNA-binding pr	92.83
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	92.78
1tue_A	212	Replication protein E1; helicase, replication, E1E	92.77
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	92.75
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	92.68
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.52
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	92.49
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	92.35
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	92.34
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	92.26
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	92.25
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	92.16
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	92.16
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	92.15
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	92.09
3co5_A	143	Putative two-component system transcriptional RES	92.01
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	91.99
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	91.97
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	91.91
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	91.82
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	91.79
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	91.77
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	91.72
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	91.72
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	91.7
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	91.69
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	91.66
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	91.65
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	91.63
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	91.59

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=1.1e-24  Score=197.30  Aligned_cols=176  Identities=28%  Similarity=0.394  Sum_probs=135.4

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ..+....|+++|.||||||||+|+|++.++..++..+++|+.......... +..+.||||||+..+..  .........
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~--~~~l~~~~~   83 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK--SDVLGHSMV   83 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT--TCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc--chhHHHHHH
Confidence            345567899999999999999999999998888999999999888887777 88999999999986541  112233344


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCC-CCCcE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP-GYERI  292 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~  292 (322)
                      ..+...+..+|++++|+|++++.+..+..  .|+..+...   +.|+++|+||+|+.............+.... ...++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~--~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i  158 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEE--IYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI  158 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHH--HHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence            55556678899999999998765544432  335555543   5689999999999844455555555565555 45679


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +++||++|.|+++++++|.+.+.+.
T Consensus       159 ~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          159 VPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCccC
Confidence            9999999999999999999998754

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.92  E-value=2.1e-24  Score=178.75  Aligned_cols=164  Identities=22%  Similarity=0.306  Sum_probs=119.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .+.+|+++|.+|||||||+|+|.+.....+...+++|.+.....+...+..+.+|||||+..+..    ......+...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~   78 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD----EVERIGIERAW   78 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS----HHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh----HHHHHHHHHHH
Confidence            46789999999999999999999887666677788887776666667777899999999975321    11122345566


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|+|+++..+.....+...+...   ...+.|+++|+||+|+.....       .+....+ .++++|||
T Consensus        79 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~-~~~~~~SA  147 (172)
T 2gj8_A           79 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR---LPAKLPITVVRNKADITGETL-------GMSEVNG-HALIRLSA  147 (172)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHH---SCTTCCEEEEEECHHHHCCCC-------EEEEETT-EEEEECCT
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHh---cccCCCEEEEEECccCCcchh-------hhhhccC-CceEEEeC
Confidence            678899999999999887766544333333332   223578999999999854211       1112222 36899999


Q ss_pred             CCCCCHHHHHHHHHHHhhh
Q 020714          298 LKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~  316 (322)
                      ++|.|+++++++|.+.+..
T Consensus       148 ~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          148 RTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             TTCTTHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHhhh
Confidence            9999999999999988754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=6.5e-25  Score=209.14  Aligned_cols=247  Identities=20%  Similarity=0.227  Sum_probs=152.8

Q ss_pred             CCceEEEccccCCCCCC-------------------CCCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhhHHH
Q 020714           45 DCDSVFDSSYFRIPTID-------------------DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEE  104 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~~-------------------~~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~  104 (322)
                      .+|+++-+.|++.++..                   -||+|+....  ..+..++.......+..++ ++.|..+++...
T Consensus       102 ~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i  179 (456)
T 4dcu_A          102 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV  179 (456)
T ss_dssp             HCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTTHHHHHHHH
T ss_pred             hCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHHHcCCCceEEeecccccchHHHHHHH
Confidence            47888888887754332                   3888876432  2222333222334556666 666766652111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee
Q 020714          105 EEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK  184 (322)
Q Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~  184 (322)
                                    ...+....     ........++|+++|.+|||||||+|+|++.....++..+++|.+.....+..
T Consensus       180 --------------~~~l~~~~-----~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~  240 (456)
T 4dcu_A          180 --------------AEHFKNIP-----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY  240 (456)
T ss_dssp             --------------HTTGGGSC-----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE
T ss_pred             --------------Hhhccccc-----ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE
Confidence                          11110000     01223457899999999999999999999887777888899998876666667


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      .+..+.||||||+........ .........++..+..+|++++|+|++.+..+.+..+..++..      .+.|+++|+
T Consensus       241 ~~~~~~l~DT~G~~~~~~~~~-~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~------~~~~~ilv~  313 (456)
T 4dcu_A          241 NQQEFVIVDTAGMRKKGKVYE-TTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE------AGKAVVIVV  313 (456)
T ss_dssp             TTEEEEETTGGGTTTBTTBCC-CCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH------TTCEEEEEE
T ss_pred             CCceEEEEECCCCCcCcccch-HHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH------cCCCEEEEE
Confidence            788999999999864322111 1112233445556788999999999988766665555555544      246899999


Q ss_pred             eCCCCCCChhH-HHH---HHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          265 NKVDLVTKKKD-LLK---VAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       265 NK~Dl~~~~~~-~~~---~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      ||+|+...... .++   .........+..++++|||++|.|+++++++|.+.+..+..
T Consensus       314 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          314 NKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             ECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            99999865332 222   22222222234579999999999999999999998876644

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.92  E-value=3.6e-24  Score=193.03  Aligned_cols=169  Identities=25%  Similarity=0.308  Sum_probs=125.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +..+|+++|.||||||||+|+|++.++..++..+++|++.........+..+.||||||+..+..    .........+.
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~----~l~~~~~~~~~   81 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD----ALGEFMDQEVY   81 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS----HHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh----HHHHHHHHHHH
Confidence            34579999999999999999999998887888889998877777767788999999999986432    22222344555


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|+|++++.+..+..+.   ..+... .++.|+++|+||+|+.............+   .++.+++++||
T Consensus        82 ~~l~~ad~il~VvD~~~~~~~~~~~i~---~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iSA  154 (301)
T 1wf3_A           82 EALADVNAVVWVVDLRHPPTPEDELVA---RALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLSA  154 (301)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHHHHHH---HHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECCT
T ss_pred             HHHhcCCEEEEEEECCCCCChHHHHHH---HHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEeC
Confidence            678899999999999876554433332   333322 13578999999999986543122333333   44557999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhc
Q 020714          298 LKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++|.|+++++++|.+.+.+.
T Consensus       155 ~~g~gv~~l~~~l~~~l~~~  174 (301)
T 1wf3_A          155 LDERQVAELKADLLALMPEG  174 (301)
T ss_dssp             TCHHHHHHHHHHHHTTCCBC
T ss_pred             CCCCCHHHHHHHHHHhcccC
Confidence            99999999999999877543

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.91  E-value=4.1e-25  Score=189.89  Aligned_cols=164  Identities=16%  Similarity=0.178  Sum_probs=113.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      +.+||+|+|.+|||||||++++....+... .++.+................+.||||+|...+..      +.      
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~------l~------   79 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS------LI------   79 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGG------GH------
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh------HH------
Confidence            568999999999999999999987765432 22223222222221222234678999999986532      11      


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      -..++.++++++|||+++..+.  ..+..|+..+.....++.|+++|+||+|+...+.+..+....++..++. ++++||
T Consensus        80 ~~~~~~a~~~ilv~di~~~~Sf--~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~S  156 (216)
T 4dkx_A           80 PSYIRDSAAAVVVYDITNVNSF--QQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNV-MFIETS  156 (216)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEEB
T ss_pred             HHHhccccEEEEEeecchhHHH--HHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCC-eeEEEe
Confidence            1346788999999999764333  3455677666655556789999999999987655555556666666666 599999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|.||+++|+.|.+.+..
T Consensus       157 Aktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          157 AKAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             TTTTBSHHHHHHHHHHHC--
T ss_pred             CCCCcCHHHHHHHHHHHHHh
Confidence            99999999999999998864

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=9.3e-25  Score=206.92  Aligned_cols=245  Identities=21%  Similarity=0.241  Sum_probs=151.8

Q ss_pred             CCceEEEccccCCCCCC-------------------CCCCCCCCCCChhhHHHHHHhhC-CeEEEeec-cccchhhhhHH
Q 020714           45 DCDSVFDSSYFRIPTID-------------------DPQNNNAAKKQEPTWDEKYRERT-DRIVFGEE-AQKGKLRIFQE  103 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~~-------------------~~k~dl~~~~~~~~w~~~~~~~~-~~i~f~~~-~~~~~~~~~~~  103 (322)
                      .+|+++-+.|++.+...                   -||+|+...+.  .+..++ ..+ ..++..++ ++.|...+++.
T Consensus        82 ~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~  158 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDLLDA  158 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHH
T ss_pred             hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHHHHH
Confidence            48888888887665433                   28999865421  111122 233 35677777 78887766322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe
Q 020714          104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT  183 (322)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~  183 (322)
                      .             . ..+....     ........++|+++|.||||||||+|+|++.....++..+++|++.....+.
T Consensus       159 i-------------~-~~l~~~~-----~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~  219 (436)
T 2hjg_A          159 V-------------A-EHFKNIP-----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFT  219 (436)
T ss_dssp             H-------------H-HTGGGCC-----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEE
T ss_pred             H-------------H-HhcCccc-----cccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEE
Confidence            1             1 1111000     0012235689999999999999999999998877788889999887766677


Q ss_pred             eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ..+..+.||||||+........ ........+++..+..+|++++|+|++++.+.++..+...+..      .+.|+++|
T Consensus       220 ~~~~~~~l~DT~G~~~~~~~~~-~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~------~~~~iiiv  292 (436)
T 2hjg_A          220 YNQQEFVIVDTAGMRKKGKVYE-TTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE------AGKAVVIV  292 (436)
T ss_dssp             ETTEEEEETTHHHHTCBTTBCC-CCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH------TTCEEEEE
T ss_pred             ECCeEEEEEECCCcCcCccccc-hHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH------cCCcEEEE
Confidence            7788899999999965432111 0011223344556788999999999988777665444333332      25789999


Q ss_pred             EeCCCCCCChhH-HHHH----HHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          264 MNKVDLVTKKKD-LLKV----AEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       264 ~NK~Dl~~~~~~-~~~~----~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      +||+|+...... .++.    ...+....+ .+++++||++|.|++++++.+.+.+..+..
T Consensus       293 ~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~  352 (436)
T 2hjg_A          293 VNKWDAVDKDESTMKEFEENIRDHFQFLDY-APILFMSALTKKRIHTLMPAIIKASENHSL  352 (436)
T ss_dssp             EECGGGSCCCTTHHHHHHHHHHHHCGGGTT-SCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EECccCCCcchHHHHHHHHHHHHhcccCCC-CCEEEEecccCCCHHHHHHHHHHHHHHhhc
Confidence            999999865332 2222    233333333 479999999999999999999998876543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.91  E-value=1.1e-23  Score=181.15  Aligned_cols=175  Identities=20%  Similarity=0.237  Sum_probs=122.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCC-hhhHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYS-HKDVKVRV  213 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~  213 (322)
                      ...++|+++|.+|||||||+|+|++.. ...+...+++|......... ..+..+.||||||+........ ........
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            356899999999999999999999986 56677788888876554443 4467899999999865432222 12223344


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH---HHHHHHHHhcC----
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFKHL----  286 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~~~~~~~~----  286 (322)
                      ...+.....+|++++|+|++++.+..+..+..++   ...   +.|+++|+||+|+......   .......+...    
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l---~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  180 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWF---APT---GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG  180 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---GGG---CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHH---Hhc---CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence            4555556678999999999876554443443333   332   4679999999999875331   22222333332    


Q ss_pred             -CCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          287 -PGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       287 -~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                       ....+++++||++|.|+++++++|.+.+...
T Consensus       181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             cCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence             2344799999999999999999999988654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.91  E-value=4.7e-24  Score=174.61  Aligned_cols=163  Identities=15%  Similarity=0.172  Sum_probs=101.6

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .++|+++|.+|||||||+|++.+.........++++..... ........+.+|||||...+...            ...
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~------------~~~   68 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGEEASLMVYDIWEQDGGRWL------------PGH   68 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTEEEEEEEEECC-----------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCEEEEEEEEECCCCccchhh------------hhh
Confidence            57899999999999999999998877666666776664322 22223456789999998754221            112


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      .+..+|++++|+|++++.+  ...+..++..+.. ...++.|+++|+||+|+.............+....+. +++++||
T Consensus        69 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  145 (166)
T 3q72_A           69 CMAMGDAYVIVYSVTDKGS--FEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC-KFIETSA  145 (166)
T ss_dssp             ----CCEEEEEEETTCHHH--HHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTC-EEEECBG
T ss_pred             hhhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCC-cEEEecc
Confidence            3577899999999975422  2334455555443 2335689999999999986554444444555555555 6999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhc
Q 020714          298 LKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++|.|+++++++|.+.+.++
T Consensus       146 ~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          146 ALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             GGTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.91  E-value=6.1e-23  Score=172.26  Aligned_cols=171  Identities=20%  Similarity=0.242  Sum_probs=121.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC-hhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~  215 (322)
                      ...++|+++|.+|||||||+|+|++.........+++|......   ..+..+.+|||||+........ ..........
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~   97 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFY---LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED   97 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEE---EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEE---EECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence            45689999999999999999999998877777778877765543   2356899999999754322111 1112223334


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHHHHHhcCCCCCcEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~  293 (322)
                      .+.....+|++++|+|++......+..+..++...      +.|+++|+||+|+.....  ...+....+....+..+++
T Consensus        98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (195)
T 3pqc_A           98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII  171 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred             HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence            44455677999999999776555555555666554      467999999999976432  2333344444444445799


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhh
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++||++|.|+++++++|.+.+.+
T Consensus       172 ~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          172 PTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EEecCCCCCHHHHHHHHHHHhhc
Confidence            99999999999999999998864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=5.8e-24  Score=201.61  Aligned_cols=252  Identities=20%  Similarity=0.213  Sum_probs=154.5

Q ss_pred             CCceEEEccccCCCCCC-------------------CCCCCCCCCCChhhHHHHHHhhCC-eEEEeec-cccchhhhhHH
Q 020714           45 DCDSVFDSSYFRIPTID-------------------DPQNNNAAKKQEPTWDEKYRERTD-RIVFGEE-AQKGKLRIFQE  103 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~~-------------------~~k~dl~~~~~~~~w~~~~~~~~~-~i~f~~~-~~~~~~~~~~~  103 (322)
                      .+|+++-+.|++.+...                   -||+|+........|..++ ..+. .++..++ ++.|...+++.
T Consensus        81 ~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~  159 (439)
T 1mky_A           81 EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAEHNINLDTMLET  159 (439)
T ss_dssp             TCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHH
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHH
Confidence            58999998888765432                   2899975431122223333 3443 5677777 88888777322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe
Q 020714          104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT  183 (322)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~  183 (322)
                      .             .+...+.... . .........++|+++|.||||||||+|+|++.....++..+|+|++...+.+.
T Consensus       160 i-------------~~~l~~~~~~-~-~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~  224 (439)
T 1mky_A          160 I-------------IKKLEEKGLD-L-ESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVF  224 (439)
T ss_dssp             H-------------HHHHHHTTCC-S-SSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEE
T ss_pred             H-------------HHhccccccc-c-hhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEE
Confidence            1             1111111000 0 00001235689999999999999999999998877788999999887777777


Q ss_pred             eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ..+..+.+|||||+.................+++..+..+|++++|+|++.+.+..+..+...+...      +.|+++|
T Consensus       225 ~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~------~~~~ilv  298 (439)
T 1mky_A          225 IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR------GRASVVV  298 (439)
T ss_dssp             ETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT------TCEEEEE
T ss_pred             ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEE
Confidence            7888999999999854322110000000012234456778999999999876655544444444332      4679999


Q ss_pred             EeCCCCCCChhH-HHHH----HHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          264 MNKVDLVTKKKD-LLKV----AEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       264 ~NK~Dl~~~~~~-~~~~----~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      +||+|+...... ..+.    ...+... ...+++++||++|.|++++++.|.+.+..+..
T Consensus       299 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  358 (439)
T 1mky_A          299 FNKWDLVVHREKRYDEFTKLFREKLYFI-DYSPLIFTSADKGWNIDRMIDAMNLAYASYTT  358 (439)
T ss_dssp             EECGGGSTTGGGCHHHHHHHHHHHCGGG-TTSCEEECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred             EECccCCCchhhHHHHHHHHHHHHhccC-CCCcEEEEECCCCCCHHHHHHHHHHHHHhhcc
Confidence            999999765331 2222    2333332 23479999999999999999999998876543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.91  E-value=6.7e-24  Score=175.04  Aligned_cols=167  Identities=14%  Similarity=0.123  Sum_probs=105.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ..++|+++|.+|||||||+|+|.+.........++++.......+......+.+|||||......    ..    ..  .
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~----~~--~   72 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK----SW----SQ--E   72 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-----------CH----HH--H
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccch----hh----hH--H
Confidence            46899999999999999999999988766666666654433322221234688999999864210    11    11  1


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ..+..+|++++|+|+++..+.  ..+..|+..+... ...+.|+++|+||+|+...+....+....+....+. +++++|
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~S  149 (175)
T 2nzj_A           73 SCLQGGSAYVIVYSIADRGSF--ESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDC-KFIETS  149 (175)
T ss_dssp             HTTTSCSEEEEEEETTCHHHH--HHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTS-EEEECB
T ss_pred             hhcccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCC-eEEEEe
Confidence            346778999999999654322  2344455444432 234688999999999986543322333344433444 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhhc
Q 020714          297 GLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~~  317 (322)
                      |++|.|+++++++|.+.+...
T Consensus       150 a~~g~gi~~l~~~l~~~~~~~  170 (175)
T 2nzj_A          150 ATLQHNVAELFEGVVRQLRLR  170 (175)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999988654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.91  E-value=5.7e-24  Score=173.09  Aligned_cols=159  Identities=26%  Similarity=0.295  Sum_probs=109.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      ++|+++|.+|||||||+|++.+.........+++|.+.........+..+.+|||||+..+.. .. .   .........
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~-~---~~~~~~~~~   76 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK-WE-K---KIQEKVDRA   76 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS-CC-H---HHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc-hH-H---HHHHHHHHH
Confidence            579999999999999999999887665666777777766666666778899999999976432 11 1   112223345


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      +..+|++++|+|++++.+..+..+..++..      .+.|+++|+||+|+......    ...+. ..+..+++++||++
T Consensus        77 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~----~~~~~-~~~~~~~~~~Sa~~  145 (161)
T 2dyk_A           77 LEDAEVVLFAVDGRAELTQADYEVAEYLRR------KGKPVILVATKVDDPKHELY----LGPLY-GLGFGDPIPTSSEH  145 (161)
T ss_dssp             TTTCSEEEEEEESSSCCCHHHHHHHHHHHH------HTCCEEEEEECCCSGGGGGG----CGGGG-GGSSCSCEECBTTT
T ss_pred             HHhCCEEEEEEECCCcccHhHHHHHHHHHh------cCCCEEEEEECcccccchHh----HHHHH-hCCCCCeEEEeccc
Confidence            788999999999987655544445555554      24679999999999765322    22233 23454699999999


Q ss_pred             CCCHHHHHHHHHHHh
Q 020714          300 GAGLKALTQYLMEQF  314 (322)
Q Consensus       300 g~gi~el~~~i~~~l  314 (322)
                      |.|+++++++|.+.+
T Consensus       146 ~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          146 ARGLEELLEAIWERL  160 (161)
T ss_dssp             TBSHHHHHHHHHHHC
T ss_pred             CCChHHHHHHHHHhC
Confidence            999999999998875

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.1e-23  Score=174.62  Aligned_cols=169  Identities=15%  Similarity=0.148  Sum_probs=111.7

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....++|+++|.+|||||||+|+|.+.........+.++.+.........+  ..+.+|||||...+..           
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-----------   75 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS-----------   75 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-----------
Confidence            345789999999999999999999987764333334333333333333344  4789999999764321           


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                       .....+..+|++++|+|++++.+.  ..+..|+..+......+.|+++|+||+|+........+....+....+. +++
T Consensus        76 -~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~  151 (180)
T 2g6b_A           76 -VTHAYYRDAHALLLLYDVTNKASF--DNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL-PFM  151 (180)
T ss_dssp             ----CCGGGCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC-CEE
T ss_pred             -HHHHHccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCC-eEE
Confidence             122456889999999999654322  2344555555443334688999999999986543323333344433444 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      ++||++|.|+++++++|.+.+.++..
T Consensus       152 ~~Sa~~~~gi~~l~~~l~~~~~~~~~  177 (180)
T 2g6b_A          152 ETSAKTGLNVDLAFTAIAKELKRRSM  177 (180)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHC---
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999877544

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.91  E-value=7e-23  Score=172.26  Aligned_cols=169  Identities=17%  Similarity=0.196  Sum_probs=108.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC-hhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|++.. .......+++|........   +..+.+|||||+........ .........
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            457899999999999999999999886 4556677777766554322   45899999999764332110 111122233


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH---HHHHHHHhcCCCCCc
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGYER  291 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~  291 (322)
                      ..+.....+|++++|+|++++.+..+..+..++..      .+.|+++|+||+|+.......   .+....+... ...+
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  170 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID-PEDE  170 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC-TTSE
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc-CCCc
Confidence            33334455699999999987665555445555554      256799999999998754322   2222334332 3347


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhh
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      ++++||++|.|+++++++|.+.+.
T Consensus       171 ~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          171 LILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             eEEEEccCCCCHHHHHHHHHHHhc
Confidence            999999999999999999998774

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.8e-23  Score=193.11  Aligned_cols=172  Identities=22%  Similarity=0.310  Sum_probs=118.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...++|+++|++|||||||+|+|.+.. ..++..+++|...........+..+.+|||||+..+...........   ..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~~  240 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQ---AI  240 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHH---HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHH---HH
Confidence            567899999999999999999999887 44566677777777666666678899999999976433221111111   12


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ......+|++++|+|++............++..+..... +.|+++|+||+|+..... ......... ..+. ++++||
T Consensus       241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~-~~~~~~~~~-~~~~-~~~~iS  316 (357)
T 2e87_A          241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN-IKRLEKFVK-EKGL-NPIKIS  316 (357)
T ss_dssp             HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH-HHHHHHHHH-HTTC-CCEECB
T ss_pred             HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH-HHHHHHHHH-hcCC-CeEEEe
Confidence            233456899999999876543233334455555443211 578999999999976432 222222222 2333 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|+|+++++++|.+.+..
T Consensus       317 A~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          317 ALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TTTTBTHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999998865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.91  E-value=4.2e-23  Score=178.65  Aligned_cols=176  Identities=20%  Similarity=0.208  Sum_probs=117.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...++|+++|.+|||||||+|+|++..+. ....+++|...........+..+.+|||||+........ ...  .+...
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~--~~~~~  102 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENR-NTI--EMTTI  102 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGC-CHH--HHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchh-hhH--HHHHH
Confidence            45799999999999999999999998765 455667777766655556678899999999964321000 000  01111


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH---HHHHHHHHhcCCC-CCcE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFKHLPG-YERI  292 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~~~~~~~~~~-~~~~  292 (322)
                      ...+..+|++++|+|+++..+........++..+... .++.|+++|+||+|+......   .......+....+ ..++
T Consensus       103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (228)
T 2qu8_A          103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF  181 (228)
T ss_dssp             HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred             HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence            1235677999999999887665544445566665543 236789999999999765332   2223444444333 2369


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++|||++|.||++++++|.+.+.+.
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          182 SSFSTLTGVGVEQAKITACELLKND  206 (228)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEecccCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.90  E-value=2.5e-23  Score=198.19  Aligned_cols=166  Identities=21%  Similarity=0.263  Sum_probs=101.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ..+++|+++|.||||||||+|+|++.....++..+++|++.....+...+..+.+|||||+..+..    .....++..+
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~----~ve~~gi~~~  306 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE----EIEHEGIRRS  306 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-----------------------
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh----HHHHHHHHHH
Confidence            457899999999999999999999988777888899999887777778889999999999975432    1112345677


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      +..+..+|++++|+|++++.+.... ....++..+.     +.|+++|+||+|+........   ..+... +..++++|
T Consensus       307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-----~~piIvV~NK~Dl~~~~~~~~---~~l~~~-~~~~~i~v  377 (476)
T 3gee_A          307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-----AAKFLTVANKLDRAANADALI---RAIADG-TGTEVIGI  377 (476)
T ss_dssp             -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-----TSEEEEEEECTTSCTTTHHHH---HHHHHH-HTSCEEEC
T ss_pred             HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-----CCCEEEEEECcCCCCccchhH---HHHHhc-CCCceEEE
Confidence            7889999999999999887655322 3344555544     578999999999987644321   222221 12469999


Q ss_pred             ecCCCCCHHHHHHHHHHHhh
Q 020714          296 SGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~  315 (322)
                      ||++|.|+++++++|.+.+.
T Consensus       378 SAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          378 SALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BTTTTBSHHHHHHHHTHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHh
Confidence            99999999999999999886

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.90  E-value=5.4e-24  Score=174.65  Aligned_cols=164  Identities=17%  Similarity=0.198  Sum_probs=113.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeee-eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      +.++|+++|.+|||||||+|+|.+.... ...+..+.+..............+.+|||||+..+..            ..
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------------~~   72 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA------------LA   72 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG------------GT
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhc------------cc
Confidence            4689999999999999999999987643 2334444444333322222346789999999864321            11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ...+..+|++++|+|++++.+.  ..+..|+..+.....+..|+++|+||+|+........+....+....+. +++++|
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~S  149 (170)
T 1z0j_A           73 PMYYRGSAAAIIVYDITKEETF--STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA-IFVETS  149 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECB
T ss_pred             HhhCcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC-EEEEEe
Confidence            1345778999999999654322  2344566655544456788999999999976444333444455544554 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|.|+++++++|.+.+.+
T Consensus       150 a~~~~~i~~l~~~i~~~i~~  169 (170)
T 1z0j_A          150 AKNAININELFIEISRRIPS  169 (170)
T ss_dssp             TTTTBSHHHHHHHHHHHCCC
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            99999999999999988753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=7.6e-24  Score=178.29  Aligned_cols=167  Identities=19%  Similarity=0.190  Sum_probs=116.4

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeee-eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....++|+++|.+|||||||+|+|++..+. ...+..+.+..............+.+|||||...+...           
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   88 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL-----------   88 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGG-----------
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhh-----------
Confidence            356799999999999999999999987643 34455555544443323234557899999998654221           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                       ....+..+|++++|+|+++..+  ...+..|+..+......+.|+++|+||+|+...+....+....+....+. ++++
T Consensus        89 -~~~~~~~~d~iilV~d~~~~~s--~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~  164 (192)
T 2fg5_A           89 -APMYYRGSAAAVIVYDITKQDS--FYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGA-IVVE  164 (192)
T ss_dssp             -THHHHTTCSEEEEEEETTCTHH--HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTC-EEEE
T ss_pred             -hHHhhccCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence             1134577899999999976432  23445566666544445689999999999975333333344555555565 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.|+++++++|.+.+.+.
T Consensus       165 ~Sa~~~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          165 TSAKNAINIEELFQGISRQIPPL  187 (192)
T ss_dssp             CBTTTTBSHHHHHHHHHHTCC--
T ss_pred             EeCCCCcCHHHHHHHHHHHHHhh
Confidence            99999999999999999987653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.90  E-value=3.1e-23  Score=171.80  Aligned_cols=164  Identities=20%  Similarity=0.178  Sum_probs=114.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|.+..... ...++.+.+.....+...+  ..+.+|||||...+.....         
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------   76 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITS---------   76 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCG---------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCC-ccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHH---------
Confidence            467899999999999999999999877552 2334444444434444455  5789999999876543221         


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                         ..+..+|++++|+|++++.  ....+..|+..+... .++.|+++|+||+|+.............+....+. ++++
T Consensus        77 ---~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  149 (181)
T 3tw8_B           77 ---TYYRGTHGVIVVYDVTSAE--SFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGI-QLFE  149 (181)
T ss_dssp             ---GGGTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHH-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-CEEE
T ss_pred             ---HHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHh-CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCC-eEEE
Confidence               3467889999999997642  223445566666543 24688999999999876543332333444444454 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.|+++++++|.+.+.+.
T Consensus       150 ~Sa~~~~gi~~l~~~l~~~~~~~  172 (181)
T 3tw8_B          150 TSAKENVNVEEMFNCITELVLRA  172 (181)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.90  E-value=8.4e-24  Score=173.32  Aligned_cols=164  Identities=17%  Similarity=0.187  Sum_probs=111.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ..++|+++|.+|||||||+|+|++...... ....+.+...........+..+.+|||||...+..            ..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------------~~   72 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS------------LA   72 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG------------GH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh------------hh
Confidence            568999999999999999999997665432 23333333333222222355789999999865321            11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ...+..+|++++|+|++++.+  ...+..|+..+.....++.|+++|+||+|+........+....+....+. +++++|
T Consensus        73 ~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  149 (170)
T 1r2q_A           73 PMYYRGAQAAIVVYDITNEES--FARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL-LFMETS  149 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHH--HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECC
T ss_pred             HHhccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCC-eEEEEe
Confidence            234577899999999965422  22344566665544445788999999999965433222233344444454 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|.|+++++++|.+.+.+
T Consensus       150 a~~g~gi~~l~~~i~~~~~~  169 (170)
T 1r2q_A          150 AKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTTCTTHHHHHHHHHHTSCC
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999987754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.90  E-value=1.9e-23  Score=175.19  Aligned_cols=167  Identities=13%  Similarity=0.126  Sum_probs=113.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....++|+++|.+|||||||+|+|++..+.. .....+.+..............+.+|||||...+...           
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   87 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI-----------   87 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS-----------
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh-----------
Confidence            3457899999999999999999999876542 2233333333222222222457899999998765331           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                       ....+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+........+....+....+. ++++
T Consensus        88 -~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  163 (189)
T 2gf9_A           88 -TTAYYRGAMGFLLMYDIANQESF--AAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF-EFFE  163 (189)
T ss_dssp             -GGGGGTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             -HHHhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEE
Confidence             12456788999999999653322  2344566555544345688999999999976433222333444444454 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.|+++++++|.+.+.++
T Consensus       164 ~Sa~~g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          164 ASAKENINVKQVFERLVDVICEK  186 (189)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.90  E-value=1.3e-23  Score=174.22  Aligned_cols=160  Identities=12%  Similarity=0.098  Sum_probs=107.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..++|+++|.+|||||||+|++.+..+....+..+...   ...+...+  ..+.+|||||...                
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~----------------   66 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY---KKEMLVDGQTHLVLIREEAGAPD----------------   66 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE---EEEEEETTEEEEEEEEECSSSCC----------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE---EEEEEECCEEEEEEEEECCCCch----------------
Confidence            56899999999999999999999877654333333221   22233333  4678999999863                


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCC--ChhHHHHHHHHHhcCCCCCcE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVT--KKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~  292 (322)
                       ...+..+|++++|+|++++.+.... .+..++..+.....++.|+++|+||+|+..  .+....+....+....+..++
T Consensus        67 -~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~  145 (178)
T 2iwr_A           67 -AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSY  145 (178)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEE
T ss_pred             -hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeE
Confidence             1234668999999999764333222 222345555544345789999999999942  222222223333332222369


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +++||++|.|++++|++|.+.+...
T Consensus       146 ~~~Sa~~~~~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          146 YETXATYGLNVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEeccccCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.90  E-value=2.1e-23  Score=175.46  Aligned_cols=168  Identities=18%  Similarity=0.189  Sum_probs=115.0

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      .....++|+|+|.+|||||||+|+|++..+.... ...+.+...........+..+.+|||||+..+...          
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------   90 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI----------   90 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT----------
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh----------
Confidence            3456799999999999999999999987655332 22233332222222223457899999998754320          


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                        ....+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+.............+....+. +++
T Consensus        91 --~~~~~~~~d~vi~v~D~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~  165 (193)
T 2oil_A           91 --TSAYYRGAVGALLVFDLTKHQTY--AVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGL-LFL  165 (193)
T ss_dssp             --HHHHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEE
T ss_pred             --hHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCC-EEE
Confidence              11345778999999999653221  2344566666554445789999999999976433223334444444555 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhc
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++||++|.|+++++++|.+.+.++
T Consensus       166 ~~Sa~~~~gi~~l~~~l~~~i~~~  189 (193)
T 2oil_A          166 ETSALDSTNVELAFETVLKEIFAK  189 (193)
T ss_dssp             EECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.90  E-value=5.4e-23  Score=172.97  Aligned_cols=167  Identities=19%  Similarity=0.189  Sum_probs=117.4

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      .....++|+++|.+|||||||+|+|.+....... .+.++.+.....+...+  ..+.+|||||...+...         
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------   81 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESY-ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI---------   81 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTT---------
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCC-CCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhh---------
Confidence            3456789999999999999999999987654322 23333333333344444  56899999998754321         


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                         ....+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+.............+....+. ++
T Consensus        82 ---~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~  155 (196)
T 3tkl_A           82 ---TSSYYRGAHGIIVVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PF  155 (196)
T ss_dssp             ---HHHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CE
T ss_pred             ---HHHHHhhCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-cE
Confidence               11345778999999999763322  2344565555544445688999999999987654433444555555565 69


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +++||++|.|++++|++|.+.+.++
T Consensus       156 ~~~Sa~~g~gv~~l~~~l~~~i~~~  180 (196)
T 3tkl_A          156 LETSAKNATNVEQSFMTMAAEIKKR  180 (196)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999998765

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.90  E-value=2.2e-23  Score=172.47  Aligned_cols=166  Identities=17%  Similarity=0.167  Sum_probs=110.8

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....++|+++|.+|||||||+|+|.+..+... ....+.+..............+.+|||||...+..            
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------   79 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA------------   79 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH------------
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhh------------
Confidence            34579999999999999999999998765422 22223332222221212235789999999764321            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      .....+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+........+....+....+. ++++
T Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  156 (179)
T 1z0f_A           80 VTRSYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL-LFLE  156 (179)
T ss_dssp             HHHHHHHTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred             hHHHHhccCCEEEEEEeCcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence            112345678999999999764222  2344555555544445789999999999975433222333444444455 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +||++|.|+++++++|.+.+.+
T Consensus       157 ~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          157 ASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EeCCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999998764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.90  E-value=4.1e-23  Score=175.03  Aligned_cols=164  Identities=14%  Similarity=0.135  Sum_probs=112.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ..++|+++|.+|||||||+|+|++..+.. ..+..+.+..............+.+|||||+..+.            ...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------~~~   74 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR------------TIT   74 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH------------HHH
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc------------chH
Confidence            46899999999999999999999876542 22333333322222222224578999999986431            122


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ...+..+|++++|+|++++.+  ...+..|+..+......+.|+++|+||+|+.............+....+. +++++|
T Consensus        75 ~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
T 1zbd_A           75 TAYYRGAMGFILMYDITNEES--FNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEAS  151 (203)
T ss_dssp             HTTGGGCSEEEEEEETTCHHH--HHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTC-EEEECB
T ss_pred             HHhhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCC-eEEEEE
Confidence            345788999999999965422  22345566666544445688999999999976543333334444444455 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|.|+++++++|.+.+.+
T Consensus       152 a~~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          152 AKDNINVKQTFERLVDVICE  171 (203)
T ss_dssp             TTTTBSSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999988765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.90  E-value=2.8e-23  Score=174.83  Aligned_cols=166  Identities=16%  Similarity=0.189  Sum_probs=108.2

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....++|+++|.+|||||||+|+|.+..+.... .+..+.+.....+...+  ..+.+|||||...+.      .     
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~------~-----   90 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC-KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN------S-----   90 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH------H-----
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCC-CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH------H-----
Confidence            345789999999999999999999987654322 12222222222233333  478999999976431      1     


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                       .....+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+........+....+.......+++
T Consensus        91 -~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  167 (192)
T 2il1_A           91 -ITSAYYRSAKGIILVYDITKKETF--DDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFC  167 (192)
T ss_dssp             -HHHHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEE
T ss_pred             -HHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEE
Confidence             122345678999999999764322  22344555554433446889999999999764433333344555543334799


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhh
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++||++|.|+++++++|.+.+.+
T Consensus       168 ~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          168 EASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999998865

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.90  E-value=2.7e-23  Score=172.52  Aligned_cols=166  Identities=19%  Similarity=0.218  Sum_probs=112.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ...++|+++|.+|||||||+|+|++..+.... ...+.+..............+.+|||||...+..            .
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------~   77 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------------L   77 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG------------G
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh------------h
Confidence            45689999999999999999999987654322 2223332222221222245789999999765322            0


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ....+..+|++++|+|++++.+.  .....|+..+.....++.|+++|+||+|+........+....+....+. +++++
T Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  154 (181)
T 2efe_B           78 APMYYRGAAAAIIVFDVTNQASF--ERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGL-FFMET  154 (181)
T ss_dssp             THHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred             hHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCC-EEEEE
Confidence            11345778999999999653322  2345566666554445789999999999976544333334444444555 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||++|.|+++++++|.+.+.+.
T Consensus       155 Sa~~g~gi~~l~~~l~~~~~~~  176 (181)
T 2efe_B          155 SAKTATNVKEIFYEIARRLPRV  176 (181)
T ss_dssp             CSSSCTTHHHHHHHHHHTCC--
T ss_pred             ECCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999987653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.90  E-value=3.7e-23  Score=169.14  Aligned_cols=162  Identities=14%  Similarity=0.092  Sum_probs=104.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      +.++|+++|.+|||||||+|+|.+.......  ..++...........  ...+.+|||||...+..      ..     
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~-----   68 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKY--DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA------MR-----   68 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSC--CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT------HH-----
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCccceEEEEEEECCEEEEEEEEECCChHHHHH------HH-----
Confidence            3589999999999999999999986543221  122222222222233  34688999999875432      11     


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                       ...+..+|++++|+|+++..+.  ..+..++..+... ...+.|+++|+||+|+...+....+....+....+..++++
T Consensus        69 -~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  145 (167)
T 1c1y_A           69 -DLYMKNGQGFALVYSITAQSTF--NDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLE  145 (167)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEE
T ss_pred             -HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEE
Confidence             1234568999999999654222  1233344333221 23467899999999997643332333344444343347999


Q ss_pred             eecCCCCCHHHHHHHHHHHhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +||++|.|+++++++|.+.+.
T Consensus       146 ~Sa~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          146 SSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHT
T ss_pred             ecCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998774

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=1.3e-23  Score=172.18  Aligned_cols=163  Identities=20%  Similarity=0.205  Sum_probs=109.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .++|+++|.+|||||||+|++.+..... ..+..+.+..............+.+|||||...+..            ...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------------~~~   70 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS------------LAP   70 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG------------GHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh------------hhh
Confidence            5789999999999999999999876542 223333333222222222234789999999764321            112


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC---hhHHHHHHHHHhcCCCCCcEEE
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK---KKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ..+..+|++++|+|++++.+.  ..+..|+..+.....++.|+++|+||+|+...   .....+....+....+. ++++
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~  147 (170)
T 1ek0_A           71 XYYRNAQAALVVYDVTKPQSF--IKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL-LFFE  147 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             hhhccCcEEEEEEecCChHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC-EEEE
Confidence            345788999999999654222  34445666655444457889999999999754   22333334444443444 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +||++|.|+++++++|.+.+.+
T Consensus       148 ~Sa~~~~gi~~l~~~l~~~i~~  169 (170)
T 1ek0_A          148 TSAKTGENVNDVFLGIGEKIPL  169 (170)
T ss_dssp             CCTTTCTTHHHHHHHHHTTSCC
T ss_pred             EeCCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999987653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.89  E-value=1.6e-22  Score=166.11  Aligned_cols=161  Identities=19%  Similarity=0.201  Sum_probs=110.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+.++|+++|.+|||||||+|++.+..+....+..+    .....+...+..+.+|||||...+..            ..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~------------~~   68 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG----FNVETVTYKNLKFQVWDLGGLTSIRP------------YW   68 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS----EEEEEEEETTEEEEEEEECCCGGGGG------------GG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCc----cceEEEEECCEEEEEEECCCChhhhH------------HH
Confidence            457899999999999999999998876543333222    22233445678899999999865321            11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH----hcCCCCCc
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF----KHLPGYER  291 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~  291 (322)
                      ...+..+|++++|+|++++.+.  .....++..+. .....+.|+++|+||+|+..... ..+....+    ....+. +
T Consensus        69 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~  144 (171)
T 1upt_A           69 RCYYSNTDAVIYVVDSCDRDRI--GISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKW-Q  144 (171)
T ss_dssp             GGGCTTCSEEEEEEETTCCTTH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCE-E
T ss_pred             HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-HHHHHHHhCchhccCCce-E
Confidence            2456789999999999775433  23344444443 22224688999999999976532 12222222    222233 6


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++++||++|.|+++++++|.+.+.+.
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          145 IFKTSATKGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEECcCCCCcCHHHHHHHHHHHHhhc
Confidence            99999999999999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.89  E-value=6.7e-23  Score=173.93  Aligned_cols=168  Identities=14%  Similarity=0.101  Sum_probs=111.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....++|+++|.+|||||||+|+|.+..+.... .+..+.+.....+...+  ..+.+|||||...+.      .     
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~-----   93 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQ-GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR------T-----   93 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGGH------H-----
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCC-CCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH------H-----
Confidence            455799999999999999999999877643211 11111222222233344  578999999986431      1     


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                       .....+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+...+....+....+....+..+++
T Consensus        94 -~~~~~~~~~d~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  170 (201)
T 2hup_A           94 -ITQSYYRSANGAILAYDITKRSSF--LSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAI  170 (201)
T ss_dssp             -HHHHHHTTCSEEEEEEETTBHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEE
T ss_pred             -HHHHHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEE
Confidence             122346788999999999653222  23445666655443456899999999999764332233344455545664699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      +|||++|.||++++++|.+.+.+..
T Consensus       171 ~~SA~~g~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          171 ETSAKDSSNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999987653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.89  E-value=1.7e-22  Score=171.78  Aligned_cols=165  Identities=18%  Similarity=0.171  Sum_probs=114.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|.+..+... ..+..+.+.....+...+  ..+.+|||||...+....          
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------   74 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTND-YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT----------   74 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTT-CCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH----------
Confidence            4578999999999999999999998765422 122222222222233333  478999999987654321          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                        ...+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+...+....+....+....+. ++++
T Consensus        75 --~~~~~~~d~vilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  149 (206)
T 2bcg_Y           75 --SSYYRGSHGIIIVYDVTDQESF--NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM-PFLE  149 (206)
T ss_dssp             --GGGGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEE
T ss_pred             --HHhccCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEE
Confidence              2356788999999999654322  3445566666544445688999999999986543333334445444555 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.|+++++++|.+.+.+.
T Consensus       150 ~Sa~~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          150 TSALDSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.89  E-value=3e-22  Score=167.72  Aligned_cols=163  Identities=18%  Similarity=0.216  Sum_probs=113.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+.++|+++|.+|||||||+|++.+.......+..+.+.    ..+...+..+.+|||||+..+.....           
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~Dt~G~~~~~~~~~-----------   84 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL----ETLQYKNISFEVWDLGGQTGVRPYWR-----------   84 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE----EEEEETTEEEEEEEECCSSSSCCCCS-----------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE----EEEEECCEEEEEEECCCCHhHHHHHH-----------
Confidence            467999999999999999999998877655444333222    22334678899999999876543221           


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCCc
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYER  291 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~  291 (322)
                       ..+..+|++++|+|++++.+.  .....++..+. .....+.|+++|+||+|+..... ..+....+.    ...+. +
T Consensus        85 -~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~  159 (189)
T 2x77_A           85 -CYFSDTDAVIYVVDSTDRDRM--GVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVSSIMNRTW-T  159 (189)
T ss_dssp             -SSSTTCCEEEEEEETTCCTTH--HHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE-E
T ss_pred             -HHhhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhccCCce-E
Confidence             346788999999999765433  33444555443 33345789999999999976522 122222221    22233 6


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      +++|||++|.|+++++++|.+.+.++.+
T Consensus       160 ~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  187 (189)
T 2x77_A          160 IVKSSSKTGDGLVEGMDWLVERLREQGL  187 (189)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHTC-
T ss_pred             EEEccCCCccCHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999987653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.89  E-value=2.8e-23  Score=170.48  Aligned_cols=164  Identities=17%  Similarity=0.179  Sum_probs=106.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|++.+...... ..+..+.......+...+  ..+.+|||||...+..            
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------   70 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDK-HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA------------   70 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSS-CCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcC-CCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh------------
Confidence            3568999999999999999999997764321 112222222222233333  3678999999764322            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      .....+..+|++++|+|+++..+  ...+..|+..+......+.|+++|+||+|+........+....+....+. ++++
T Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  147 (170)
T 1z08_A           71 LGPIYYRDSNGAILVYDITDEDS--FQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA-KHYH  147 (170)
T ss_dssp             --CCSSTTCSEEEEEEETTCHHH--HHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred             hHHHHhccCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-eEEE
Confidence            11234678899999999965322  22344555554432223578999999999976433222333444444454 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +||++|.|+++++++|.+.+.+
T Consensus       148 ~Sa~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          148 TSAKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             EBTTTTBSHHHHHHHHHHHHHC
T ss_pred             ecCCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999998764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.89  E-value=3.9e-23  Score=173.69  Aligned_cols=165  Identities=17%  Similarity=0.150  Sum_probs=111.7

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      ....++|+++|.+|||||||+|+|.+..+..... ..+.+..  ...+...+  ..+.+|||||...+....        
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------   87 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMVNIDGKQIKLQIWDTAGQESFRSIT--------   87 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEE--EEEEEETTEEEEEEEECCTTGGGTSCCC--------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeE--EEEEEECCEEEEEEEEECCCchhhhhhH--------
Confidence            3457899999999999999999999876543222 2222222  22233333  578999999987654321        


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                          ...+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+........+....+....+. ++
T Consensus        88 ----~~~~~~~d~ii~v~d~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~  160 (191)
T 2a5j_A           88 ----RSYYRGAAGALLVYDITRRETF--NHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL-IF  160 (191)
T ss_dssp             ----HHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EE
T ss_pred             ----HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC-EE
Confidence                1345678999999999653222  2344566666544445789999999999975433222333444443444 69


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +++||++|.|+++++++|.+.+.++
T Consensus       161 ~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (191)
T 2a5j_A          161 METSAKTACNVEEAFINTAKEIYRK  185 (191)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999888654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.89  E-value=6.6e-23  Score=170.38  Aligned_cols=164  Identities=13%  Similarity=0.076  Sum_probs=111.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      +.++|+++|.+|||||||+|+|.+.....  ....++...........+  ..+.+|||||...+.....          
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------   72 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVD--SYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQ----------   72 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCG----------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHH----------
Confidence            46899999999999999999999665332  222233322233333444  4678999999886543211          


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                        ..+..+|++++|+|+++..+.  ..+..|+..+.. ....+.|+++|+||+|+........+....+....+. ++++
T Consensus        73 --~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  147 (181)
T 3t5g_A           73 --TYSIDINGYILVYSVTSIKSF--EVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFLE  147 (181)
T ss_dssp             --GGTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEE
T ss_pred             --HHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC-cEEE
Confidence              346778999999999653222  234445544432 2234678999999999976554444445555555566 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhcC
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      +||++|.|+++++++|.+.+....
T Consensus       148 ~Sa~~~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          148 SSAKENQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred             EecCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999988754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.89  E-value=6.8e-23  Score=171.52  Aligned_cols=162  Identities=13%  Similarity=0.099  Sum_probs=112.0

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      .....++|+++|.+|||||||+|++++..+......   |.......+...+  ..+.+|||||...+.           
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------   81 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP---EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----------   81 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT---TCEEEEEEEEETTEEEEEEEEECSSSCCHH-----------
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC---CcceEEEEEEECCEEEEEEEEECCCChhhh-----------
Confidence            445689999999999999999999988765432221   1222222333444  456789999986421           


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCCCcEEEEEeCCCCCC--ChhHHHHHHHHHhcCCCC
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVT--KKKDLLKVAEQFKHLPGY  289 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~~p~ivV~NK~Dl~~--~~~~~~~~~~~~~~~~~~  289 (322)
                            .+..+|++++|||+++..+.  ..+..|+..+.... ..+.|+++|+||+|+..  ......+....+....+.
T Consensus        82 ------~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~  153 (184)
T 3ihw_A           82 ------FAAWVDAVVFVFSLEDEISF--QTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKR  153 (184)
T ss_dssp             ------HHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTT
T ss_pred             ------eecCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCC
Confidence                  34568999999999764322  23455776665432 24678999999999942  222333344455555554


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          290 ERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      .++++|||++|.|++++|++|.+.+....
T Consensus       154 ~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          154 CTYYETCATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             CEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             CeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999887654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.89  E-value=3.8e-23  Score=168.72  Aligned_cols=162  Identities=15%  Similarity=0.116  Sum_probs=105.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      +.++|+++|.+|||||||+|++.+........  .++...........+  ..+.+|||||...+.      ..      
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~------   67 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYD--PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA------SM------   67 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCC--TTCCEEEEEEEEETTEEEEEEEEECCCTTCCH------HH------
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCC--CCcceeEEEEEEECCEEEEEEEEECCCchhhH------HH------
Confidence            35899999999999999999999776543222  222222222233333  358899999976431      11      


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ....+..+|++++|+|+++..+.  ..+..++..+.. ....+.|+++|+||+|+.............+....+. ++++
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  144 (167)
T 1kao_A           68 RDLYIKNGQGFILVYSLVNQQSF--QDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC-PFME  144 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-CEEE
T ss_pred             HHHHhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCC-CEEE
Confidence            11235677999999999653221  233444444332 1224688999999999875433323333344443444 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +||++|.|+++++++|.+.+.+
T Consensus       145 ~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          145 TSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             ECTTCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCcCHHHHHHHHHHHHhh
Confidence            9999999999999999998765

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=2.9e-22  Score=166.65  Aligned_cols=162  Identities=15%  Similarity=0.172  Sum_probs=111.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...++|+++|.+|||||||+|++.+..+....+..+.+..    .+...+..+.+|||||...+...            .
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~------------~   79 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTSIRPY------------W   79 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE----EEEETTEEEEEEEEC----CCTT------------G
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE----EEEECCEEEEEEECCCCHhHHHH------------H
Confidence            4689999999999999999999998877655555553322    23345788999999999764331            1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC---CCCCcE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PGYERI  292 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~  292 (322)
                      ...+..+|++++|+|++++.+.  .....++..+... ...+.|+++|+||+|+..... ..+....+...   ....++
T Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~  156 (183)
T 1moz_A           80 RCYYADTAAVIFVVDSTDKDRM--STASKELHLMLQEEELQDAALLVFANKQDQPGALS-ASEVSKELNLVELKDRSWSI  156 (183)
T ss_dssp             GGTTTTEEEEEEEEETTCTTTH--HHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC-HHHHHHHTTTTTCCSSCEEE
T ss_pred             HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEE
Confidence            2356789999999999765332  3345566655433 245789999999999976421 22222222211   111268


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +++||++|.|+++++++|.+.+.++
T Consensus       157 ~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          157 VASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             EEccCCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999999988764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.89  E-value=2.8e-23  Score=172.95  Aligned_cols=165  Identities=14%  Similarity=0.139  Sum_probs=89.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|.+..+.. ...+.++.+.....+...+  ..+.+|||||...+...           
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   73 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------   73 (183)
T ss_dssp             SEEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh-----------
Confidence            357899999999999999999998765432 1112223222222233444  67899999998654221           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                       ....+..+|++++|+|++++.+  ...+..|+..+.....++.|+++|+||+|+........+....+....+. ++++
T Consensus        74 -~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~  149 (183)
T 2fu5_C           74 -TTAYYRGAMGIMLVYDITNEKS--FDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI-KFME  149 (183)
T ss_dssp             -CCTTTTTCSEEEEEEETTCHHH--HHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             -HHHHHhcCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCC-eEEE
Confidence             1235678999999999976322  23445566666544445689999999999976433322333344443454 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.|+++++++|.+.+.+.
T Consensus       150 ~Sa~~~~~i~~l~~~l~~~i~~~  172 (183)
T 2fu5_C          150 TSAKANINVENAFFTLARDIKAK  172 (183)
T ss_dssp             CCC---CCHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999888653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.89  E-value=6e-23  Score=168.37  Aligned_cols=163  Identities=16%  Similarity=0.165  Sum_probs=107.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..++|+++|.+|||||||+|+|.+..+.. ...+..+.+.....+...+  ..+.+|||||...+....           
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~-----------   69 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT-----------   69 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC-----------
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH-----------
Confidence            35899999999999999999999776532 1222223222222233333  468999999987654321           


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                       ...+..+|++++|+|++++.+.  ..+..|+..+.....++.|+++|+||+|+..... ..+....+....+. +++++
T Consensus        70 -~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~~  144 (170)
T 1g16_A           70 -TAYYRGAMGIILVYDITDERTF--TNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV-TADQGEALAKELGI-PFIES  144 (170)
T ss_dssp             -HHHHTTEEEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCS-CHHHHHHHHHHHTC-CEEEC
T ss_pred             -HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCCcCcc-CHHHHHHHHHHcCC-eEEEE
Confidence             1345778999999999654322  2344555555444345688999999999954322 22233334433454 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||++|.|+++++++|.+.+.++
T Consensus       145 Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          145 SAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.89  E-value=2.1e-22  Score=164.33  Aligned_cols=158  Identities=15%  Similarity=0.155  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      ++|+++|.+|||||||+|++.+..+....+..+    .....+...+..+.+|||||...+.      .      .....
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~------~------~~~~~   64 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNISFTVWDVGGQDKIR------P------LWRHY   64 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS----CCEEEEECSSCEEEEEECCCCGGGH------H------HHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCc----eeEEEEEECCEEEEEEEcCCChhhH------H------HHHHH
Confidence            479999999999999999998766543322222    2222344567889999999986421      1      11234


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCCcEEE
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYERIFM  294 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~  294 (322)
                      +..+|++++|+|++++.+.  .....++..+.. ...++.|+++|+||+|+..... ..+....+.    ...+. ++++
T Consensus        65 ~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~~~~  140 (164)
T 1r8s_A           65 FQNTQGLIFVVDSNDRERV--NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNW-YIQA  140 (164)
T ss_dssp             TTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCE-EEEE
T ss_pred             hccCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC-HHHHHHHhCcccccCccE-EEEE
Confidence            6889999999999764322  334455555432 2334688999999999976422 222222221    11222 5899


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      |||++|.|+++++++|.+.+.++
T Consensus       141 ~Sa~~~~gi~~l~~~l~~~i~~~  163 (164)
T 1r8s_A          141 TCATSGDGLYEGLDWLSNQLRNQ  163 (164)
T ss_dssp             CBTTTTBTHHHHHHHHHHHC---
T ss_pred             cccCCCcCHHHHHHHHHHHHhhc
Confidence            99999999999999999988654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.89  E-value=5.6e-23  Score=167.88  Aligned_cols=162  Identities=17%  Similarity=0.101  Sum_probs=104.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..++|+++|.+|||||||+|+|.+..+...  ..+++...........+  ..+.+|||||...+.      ..      
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~------   68 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED--YEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA------AI------   68 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCC---CH------HH------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCC--CCCCcceEEEEEEEECCEEEEEEEEECCCcchhH------HH------
Confidence            468999999999999999999998764322  22233222222233333  478999999976431      11      


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ....+..+|++++|+|+++..+.  ..+..|+..+... ...+.|+++|+||+|+.............+....+. ++++
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  145 (168)
T 1u8z_A           69 RDNYFRSGEGFLCVFSITEMESF--AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV-NYVE  145 (168)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             HHHHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCC-eEEE
Confidence            11235678999999999653222  2334444444322 223578999999999976433222233333333344 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +||++|.|+++++++|.+.+.+
T Consensus       146 ~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          146 TSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             eCCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999998864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1.7e-23  Score=175.95  Aligned_cols=167  Identities=13%  Similarity=0.121  Sum_probs=115.4

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....++|+|+|.+|||||||+|+|++..+.. .....+.+...........+..+.+|||||...+.            .
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------~   87 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR------------T   87 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH------------H
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH------------H
Confidence            3457899999999999999999998765322 22223334333333333345678999999975331            1


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      .....+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+.............+....+. ++++
T Consensus        88 ~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  164 (191)
T 3dz8_A           88 ITTAYYRGAMGFILMYDITNEESF--NAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF-DFFE  164 (191)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             HHHHHHccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEE
Confidence            122346788999999999753222  2344566666554445789999999999975443333444445444455 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.|+++++++|.+.+.++
T Consensus       165 ~Sa~~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          165 ASAKENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999988764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.89  E-value=1.3e-22  Score=169.31  Aligned_cols=165  Identities=17%  Similarity=0.173  Sum_probs=112.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|.+....... .+..+.......+...+  ..+.+|||||...+.            .
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------~   74 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS-NHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR------------S   74 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC-CCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH------------H
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH------------H
Confidence            45789999999999999999999987654322 22223232223333344  578999999976421            1


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      .....+..+|++++|+|++++.+.  ..+..|+..+......+.|+++|+||+|+.............+....+. ++++
T Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  151 (186)
T 2bme_A           75 VTRSYYRGAAGALLVYDITSRETY--NALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL-MFLE  151 (186)
T ss_dssp             HHHTTSTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred             HHHHHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence            233567889999999999763322  2344555555433335789999999999965433222333444444454 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.|+++++++|.+.+.+.
T Consensus       152 ~Sa~~~~gi~~l~~~l~~~~~~~  174 (186)
T 2bme_A          152 TSALTGENVEEAFVQCARKILNK  174 (186)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999888653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.89  E-value=5.9e-23  Score=174.08  Aligned_cols=165  Identities=15%  Similarity=0.139  Sum_probs=111.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe--eCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      .+.++|+++|.+|||||||+|+|.+..+.....  .++.........  .....+.+|||||...+....          
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------   89 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD--PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP----------   89 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC--CCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC----------
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC--CccceEEEEEEEECCEEEEEEEEECCCccchHHHH----------
Confidence            467999999999999999999999876553222  222222222222  234667999999987654321          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                        ...+..+|++++|+|+++..+  ...+..|+..+... ...+.|+++|+||+|+.............+....+. +++
T Consensus        90 --~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~  164 (201)
T 3oes_A           90 --YSFIIGVHGYVLVYSVTSLHS--FQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA-TFM  164 (201)
T ss_dssp             --GGGTTTCCEEEEEEETTCHHH--HHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEE
T ss_pred             --HHHHhcCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCC-eEE
Confidence              135678899999999965322  23455666665433 234678999999999976543333334444444455 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++||++|.|++++|++|.+.+.+..
T Consensus       165 ~~Sa~~~~~v~~l~~~l~~~i~~~~  189 (201)
T 3oes_A          165 ESSARENQLTQGIFTKVIQEIARVE  189 (201)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999987653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.89  E-value=9e-23  Score=167.42  Aligned_cols=164  Identities=14%  Similarity=0.108  Sum_probs=104.0

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .++|+++|.+|||||||+|+|.+.........+ .+.+.....+...+  ..+.+|||||...+.....           
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-----------   69 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQ-----------   69 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-------------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCccccchhhh-----------
Confidence            478999999999999999999876544333222 22333333333343  4678999999875422110           


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ...+..+|++++|+|+++..+.  ..+..|+..+.... ..+.|+++|+||+|+........+....+....+. +++++
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  146 (169)
T 3q85_A           70 DHCLQTGDAFLIVFSVTDRRSF--SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIET  146 (169)
T ss_dssp             CHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred             hhhhccCCEEEEEEECCChHHH--HHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC-cEEEe
Confidence            0124557999999999663222  23445555544322 23688999999999975444444445555555566 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||++|.|+++++++|.+.+..+
T Consensus       147 Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          147 SAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHT
T ss_pred             cCccCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999988754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.89  E-value=6.6e-23  Score=175.79  Aligned_cols=166  Identities=17%  Similarity=0.206  Sum_probs=112.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ...++|+++|.+|||||||+|+|++..... .....+.+...... ....+  ..+.+|||||...+.....        
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~~~~~~~--------   79 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTF-LDDQGNVIKFNVWDTAGQEKKAVLKD--------   79 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEE-EBTTSCEEEEEEEEECSGGGTSCCCH--------
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEE-EeCCCcEEEEEEEecCCchhhchHHH--------
Confidence            457899999999999999999999765432 23333333322221 11222  5689999999876543111        


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                          ..+..+|++++|+|++++.+..  .+..|+..+......+.|+++|+||+|+.............+....+. +++
T Consensus        80 ----~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~  152 (218)
T 4djt_A           80 ----VYYIGASGAILFFDVTSRITCQ--NLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNY-EYF  152 (218)
T ss_dssp             ----HHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCC-EEE
T ss_pred             ----HHhhcCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-cEE
Confidence                2356789999999997643322  333455555433333578999999999987644444555666666665 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++||++|.|+++++++|.+.+....
T Consensus       153 ~~Sa~~g~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          153 EISAKTAHNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             EEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred             EEecCCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999999999987753

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.89  E-value=4.5e-23  Score=169.38  Aligned_cols=162  Identities=19%  Similarity=0.295  Sum_probs=105.5

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .++|+++|.+|||||||+|+|.+.... ++..+++|.......+...+..+.+|||||+..+....    ....+...+.
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~~~~~~~~~   77 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDYI   77 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS----HHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc----hhHHHHHHHH
Confidence            478999999999999999999986542 34456666655555555567889999999998654322    1112222222


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      ....+|++++|+|+++    . .....++..+...   +.|+++|+||+|+........ ....++...+. +++++||+
T Consensus        78 ~~~~~~~~i~v~D~~~----~-~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~-~~~~~SA~  147 (165)
T 2wji_A           78 INEKPDLVVNIVDATA----L-ERNLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGV-KVVPLSAA  147 (165)
T ss_dssp             HHHCCSEEEEEEETTC----H-HHHHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTS-CEEECBGG
T ss_pred             hcCCCCEEEEEecCCc----h-hHhHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCC-CEEEEEcC
Confidence            2246899999999954    2 2233455554432   578999999999853221100 12223322343 69999999


Q ss_pred             CCCCHHHHHHHHHHHhh
Q 020714          299 KGAGLKALTQYLMEQFK  315 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~  315 (322)
                      +|.|+++++++|.+.+.
T Consensus       148 ~~~~v~~l~~~l~~~~~  164 (165)
T 2wji_A          148 KKMGIEELKKAISIAVK  164 (165)
T ss_dssp             GTBSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHhh
Confidence            99999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1.1e-22  Score=172.72  Aligned_cols=165  Identities=16%  Similarity=0.178  Sum_probs=111.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+...+  ..+.+|||||...+.            .
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~------------~   90 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR------------S   90 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH------------H
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH------------H
Confidence            457899999999999999999998776432 1122222222222333344  478999999976421            1


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      .....+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+........+....+....+. ++++
T Consensus        91 ~~~~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~  167 (201)
T 2ew1_A           91 ITQSYYRSANALILTYDITCEESF--RCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM-YYLE  167 (201)
T ss_dssp             HHGGGSTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-CEEE
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-EEEE
Confidence            233557889999999999654322  2344566655544344688999999999975433222333344433444 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      |||++|.|+++++++|.+.+.+.
T Consensus       168 ~Sa~~g~gv~~l~~~l~~~i~~~  190 (201)
T 2ew1_A          168 TSAKESDNVEKLFLDLACRLISE  190 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999888653

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.89  E-value=2.1e-22  Score=170.52  Aligned_cols=159  Identities=16%  Similarity=0.178  Sum_probs=103.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+.++|+++|.+|||||||+|++.+..+....+..+.+.    ..+..++..+.+|||||...+...            .
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~----~~~~~~~~~l~i~Dt~G~~~~~~~------------~   86 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS----EELTIAGMTFTTFDLGGHIQARRV------------W   86 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC----EEEEETTEEEEEEEECC----CCG------------G
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee----EEEEECCEEEEEEECCCcHhhHHH------------H
Confidence            456899999999999999999999887655444444432    234456788999999998754331            1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC---------
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---------  286 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~---------  286 (322)
                      ...+..+|++++|+|++++.+.  .....++..+... ...+.|+++|+||+|+... ...++....+...         
T Consensus        87 ~~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~  163 (198)
T 1f6b_A           87 KNYLPAINGIVFLVDCADHERL--LESKEELDSLMTDETIANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGSV  163 (198)
T ss_dssp             GGGGGGCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSCC
T ss_pred             HHHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHhCcccCCCcEEEEEECCCcccc-CCHHHHHHHhCccccccccccc
Confidence            1346788999999999764322  3344555554322 2346889999999999752 2222222222211         


Q ss_pred             ------CCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          287 ------PGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       287 ------~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                            ....++++|||++|.|+++++++|.+.+
T Consensus       164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence                  1223699999999999999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.89  E-value=4.2e-23  Score=174.72  Aligned_cols=166  Identities=17%  Similarity=0.162  Sum_probs=103.8

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeee-eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....++|+++|.+|||||||+|+|++..+. ......+.+.......+......+.||||||...+.      .      
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~------   92 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR------S------   92 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCH------H------
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchh------h------
Confidence            345799999999999999999999987643 233333433332222222223568999999976431      1      


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC------ChhHHHHHHHHHhcCCC
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT------KKKDLLKVAEQFKHLPG  288 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~------~~~~~~~~~~~~~~~~~  288 (322)
                      .....+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+..      ......+....+....+
T Consensus        93 ~~~~~~~~~d~iilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~  170 (199)
T 2p5s_A           93 IAKSYFRKADGVLLLYDVTCEKSF--LNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG  170 (199)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred             hHHHHHhhCCEEEEEEECCChHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC
Confidence            122345678999999999654322  2344555555443334678999999999962      12222233344444345


Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          289 YERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       289 ~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      . +++++||++|.|+++++++|.+.+.+
T Consensus       171 ~-~~~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          171 A-LFCETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             C-EEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             C-eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            4 69999999999999999999998864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.89  E-value=1.4e-22  Score=167.88  Aligned_cols=165  Identities=16%  Similarity=0.151  Sum_probs=111.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|++..+.  ....+++...........+  ..+.+|||||...+...     .    .
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-----~----~   75 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM-----R----E   75 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC-----H----H
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH-----H----H
Confidence            45789999999999999999999987543  2233344333333343444  46789999998755321     1    1


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                         ..+..+|++++|+|+++..+.  ..+..|+..+ ......+.|+++|+||+|+.............+....+. +++
T Consensus        76 ---~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~  149 (181)
T 2fn4_A           76 ---QYMRAGHGFLLVFAINDRQSF--NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV-AYF  149 (181)
T ss_dssp             ---HHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEE
T ss_pred             ---HHHhhCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-eEE
Confidence               224567999999999653221  2344555444 222234678999999999976433323334444444455 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++||++|.|+++++++|.+.+.+..
T Consensus       150 ~~Sa~~~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          150 EASAKLRLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999987653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.89  E-value=1.1e-22  Score=169.34  Aligned_cols=165  Identities=15%  Similarity=0.111  Sum_probs=110.1

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      .....++|+++|.+|||||||+|+|.+.......  ..++...........+.  .+.+|||||...+....        
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------   83 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY--DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR--------   83 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH--------
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHH--------
Confidence            3456799999999999999999999976543222  22222222333334443  45679999987543211        


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCc
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER  291 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  291 (322)
                          ...+..+|++++|+|++++.+.  ..+..|+..+.. ....+.|+++|+||+|+........+....+....+. +
T Consensus        84 ----~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~  156 (183)
T 3kkq_A           84 ----EQYMRTGDGFLIVYSVTDKASF--EHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI-P  156 (183)
T ss_dssp             ----HHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC-C
T ss_pred             ----HHHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCC-e
Confidence                1234568999999999764322  223344444422 2234678999999999976544434444455544454 6


Q ss_pred             EEEeecC-CCCCHHHHHHHHHHHhhh
Q 020714          292 IFMTSGL-KGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       292 ~~~iSa~-~g~gi~el~~~i~~~l~~  316 (322)
                      ++++||+ +|.|++++|++|.+.+.+
T Consensus       157 ~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          157 YIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             EEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            9999999 999999999999998865

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.89  E-value=3.8e-23  Score=171.13  Aligned_cols=166  Identities=14%  Similarity=0.155  Sum_probs=108.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCC---ccEEEEeCCCcccCCCCCChhhHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD---TQICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      ...++|+++|.+|||||||+|+|.+..+.. ..+..+  .+.....+...+   ..+.+|||||...+...         
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~---------   72 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--LDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM---------   72 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTT--SSEEEEEEEETTTEEEEEEEEECTTCCTTCTT---------
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCcee--EEEEEEEEEeCCCCEEEEEEEECCCCccccch---------
Confidence            457899999999999999999999876432 112222  222222233333   67899999998754321         


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC--CCCCc-EEEEEeCCCCCCChhHHHHHHHHHhcCCCC
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQK-RVLCMNKVDLVTKKKDLLKVAEQFKHLPGY  289 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~--~~~~p-~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~  289 (322)
                         ....+..+|++++|+|++++.+.  ..+..|+..+....  ....| +++|+||+|+........+....+....+.
T Consensus        73 ---~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~  147 (178)
T 2hxs_A           73 ---LDKYIYGAQGVLLVYDITNYQSF--ENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGF  147 (178)
T ss_dssp             ---HHHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC
T ss_pred             ---hhHHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCC
Confidence               11235788999999999764322  22334444443210  01334 899999999975433222333344443444


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          290 ERIFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                       +++++||++|.|+++++++|.+.+.+..+
T Consensus       148 -~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          148 -SSHFVSAKTGDSVFLCFQKVAAEILGIKL  176 (178)
T ss_dssp             -EEEEECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred             -cEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence             69999999999999999999999987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.89  E-value=5.6e-23  Score=168.23  Aligned_cols=162  Identities=17%  Similarity=0.146  Sum_probs=107.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..++|+++|.+|||||||+|+|.+..+.... .+..+.+.....+...  ...+.+|||||...+....           
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----------   71 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDY-KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT-----------   71 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCS-SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC-----------
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCC-CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH-----------
Confidence            5789999999999999999999987643221 1222222222223233  3478999999987653311           


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                       ...+..+|++++|+|+++..+.  ..+..|+..+.... ++.|+++|+||+|+........+....+....+. +++++
T Consensus        72 -~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  146 (168)
T 1z2a_A           72 -KAYYRGAQACVLVFSTTDRESF--EAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRT  146 (168)
T ss_dssp             -HHHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEEC
T ss_pred             -HHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEE
Confidence             1235678999999999653222  23334554443322 3578999999999976433222333344443454 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      ||++|.|+++++++|.+.+.+
T Consensus       147 Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          147 SVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             BTTTTBSSHHHHHHHHHHHHC
T ss_pred             ecCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999988764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.89  E-value=4.7e-22  Score=183.54  Aligned_cols=173  Identities=21%  Similarity=0.272  Sum_probs=114.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      .|+++|++|||||||+|+|++... .+...+++|.+.....+...+..+.+|||||+....+    ....+.+..++..+
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp----~~lve~f~~tl~~~  255 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP----PQIVDAFFVTLSEA  255 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCC----GGGHHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCC----HHHHHHHHHHHHHH
Confidence            499999999999999999998875 4566778888777766777788899999999865322    33344577888889


Q ss_pred             ccccEEEEEEeCCCCCCCcHH---HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH-HHHHHHHH-hcC-CCCCcEEE
Q 020714          221 NLFEVLMVVFDVHRHLTSPDS---RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-LLKVAEQF-KHL-PGYERIFM  294 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~---~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~-~~~~~~~~-~~~-~~~~~~~~  294 (322)
                      ..+|++++|+|+++..+....   .+..++..++.   .+.|+++|+||+|+...... .......+ ... ....++++
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~  332 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGV---SGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP  332 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC---CSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc---CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            999999999999764211112   23445555543   35789999999999765311 11112111 111 11235899


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhcCCcC
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDLGLKI  321 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~~~~~  321 (322)
                      +||++|.|+++++++|.+.+......+
T Consensus       333 ~SA~~g~gi~~L~~~I~~~l~~~~~~~  359 (364)
T 2qtf_A          333 ISALKRTNLELLRDKIYQLATQLSLEH  359 (364)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHC---
T ss_pred             EECCCCcCHHHHHHHHHHHhcccCCCC
Confidence            999999999999999999998876655

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.89  E-value=3.9e-22  Score=167.70  Aligned_cols=157  Identities=15%  Similarity=0.132  Sum_probs=107.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +.++|+++|.+|||||||+|++.+..+....+..+.+    ...+..++..+.+|||||+..+...            ..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~------------~~   85 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT----SEELAIGNIKFTTFDLGGHIQARRL------------WK   85 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE----EEEEEETTEEEEEEECCCSGGGTTS------------GG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC----eEEEEECCEEEEEEECCCCHHHHHH------------HH
Confidence            4679999999999999999999987765444444332    3334466789999999999765331            12


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC----------
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL----------  286 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~----------  286 (322)
                      ..+..+|++++|+|++++.+.  .....++..+.. ....+.|+++|+||+|+... ...++..+.+...          
T Consensus        86 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~  162 (190)
T 1m2o_B           86 DYFPEVNGIVFLVDAADPERF--DEARVELDALFNIAELKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTGSQRIEG  162 (190)
T ss_dssp             GGCTTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC---CCS
T ss_pred             HHHhcCCEEEEEEECCChHHH--HHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-CCHHHHHHHhCCccccccccccc
Confidence            346788999999999764332  334455555432 22346889999999999763 2222323332211          


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      ....++++|||++|.|+++++++|.+.
T Consensus       163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          163 QRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             cceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            122369999999999999999999864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.89  E-value=4.4e-22  Score=167.80  Aligned_cols=165  Identities=20%  Similarity=0.233  Sum_probs=109.6

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeee--cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      .....++|+++|.+|||||||+|+|++..+..+  .+..+.    ....+...+..+.+|||||+..+..          
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~----------   78 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY----NVETFEKGRVAFTVFDMGGAKKFRG----------   78 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE----EEEEEEETTEEEEEEEECCSGGGGG----------
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce----eEEEEEeCCEEEEEEECCCCHhHHH----------
Confidence            445678999999999999999999999876653  333332    2223446678899999999875422          


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc--------CCCCCcEEEEEeCCCCCCChh---HHHHHHH
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ--------APPKQKRVLCMNKVDLVTKKK---DLLKVAE  281 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~--------~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~  281 (322)
                        .....+..+|++|+|+|+++..+.  ..+..++..+...        ...+.|+++|+||+|+.....   .......
T Consensus        79 --~~~~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~  154 (199)
T 4bas_A           79 --LWETYYDNIDAVIFVVDSSDHLRL--CVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDL  154 (199)
T ss_dssp             --GGGGGCTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTH
T ss_pred             --HHHHHHhcCCEEEEEEECCcHHHH--HHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcc
Confidence              111346889999999999764332  2344454444322        012578999999999987522   1111111


Q ss_pred             -HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          282 -QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       282 -~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                       .+....+. ++++|||++|.||++++++|.+.+.+..
T Consensus       155 ~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          155 TTLMGDHPF-VIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             HHHHTTSCE-EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             hhhccCCee-EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence             11133444 6999999999999999999999987653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.89  E-value=9.6e-23  Score=171.60  Aligned_cols=167  Identities=14%  Similarity=0.129  Sum_probs=112.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....++|+++|.+|||||||+|++.+..+..  ....++...........+  ..+.+|||||...+...          
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------   87 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPT--AYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRL----------   87 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTT----------
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCC--ccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHH----------
Confidence            3467999999999999999999999876432  222233232222333343  35699999998755321          


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC--hhHHHHHHHHHhcCCCCCc
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK--KKDLLKVAEQFKHLPGYER  291 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~  291 (322)
                        ....+..+|++++|+|+++..+... ....|+..+... .++.|+++|+||+|+...  .....+....+....+...
T Consensus        88 --~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (194)
T 3reg_A           88 --RPLSYADSDVVLLCFAVNNRTSFDN-ISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA  163 (194)
T ss_dssp             --GGGGCTTCSEEEEEEETTCHHHHHH-HHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred             --hHhhccCCcEEEEEEECCCHHHHHH-HHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence              1235678999999999976432222 113344444422 346889999999999753  2233344445555556656


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++++||++|.|+++++++|.+.+..+.
T Consensus       164 ~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          164 YIEASSVAKIGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred             EEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999999987754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.88  E-value=2.8e-22  Score=167.88  Aligned_cols=166  Identities=19%  Similarity=0.212  Sum_probs=109.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC-----------CccEEEEeCCCcccCCCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA-----------DTQICIFDTPGLMLNKSG  203 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~-----------~~~~~l~DtpG~~~~~~~  203 (322)
                      ....++|+++|.+|||||||+|+|.+..+... ....+.+... .......           ...+.+|||||+..+.  
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--   84 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFRE-KRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR--   84 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH--
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeee-EEEEEecCCcccccccCcEEEEEEEeCCCcHHHH--
Confidence            34578999999999999999999997664321 1222221110 1222233           2478999999986421  


Q ss_pred             CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC-CCCcEEEEEeCCCCCCChhHHHHHHHH
Q 020714          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKKDLLKVAEQ  282 (322)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~-~~~p~ivV~NK~Dl~~~~~~~~~~~~~  282 (322)
                                ......+..+|++++|+|++++.+.  ..+..++..+..... .+.|+++|+||+|+........+....
T Consensus        85 ----------~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  152 (195)
T 3bc1_A           85 ----------SLTTAFFRDAMGFLLLFDLTNEQSF--LNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARE  152 (195)
T ss_dssp             ----------HHHHHTTTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ----------HHHHHHHcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence                      1223457889999999999654322  234455555543222 467899999999997543322233334


Q ss_pred             HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +....+. +++++||++|.|+++++++|.+.+.++
T Consensus       153 ~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          153 LAEKYGI-PYFETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             HHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHcCC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            4433444 699999999999999999999988654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.88  E-value=2.2e-22  Score=166.35  Aligned_cols=164  Identities=15%  Similarity=0.109  Sum_probs=107.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|++.+...... ..+..+.......+...+  ..+.+|||||...+.            .
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------~   71 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR------------S   71 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH------------H
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh------------h
Confidence            3568999999999999999999997764321 122222222222233344  478999999976421            1


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc----cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc-CCCC
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH-LPGY  289 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~----~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~-~~~~  289 (322)
                      .....+..+|++++|+|+++..+.  ..+..|+..+..    ....+.|+++|+||+|+....... +....+.. ..+ 
T Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~-~~~~~~~~~~~~-  147 (177)
T 1wms_A           72 LRTPFYRGSDCCLLTFSVDDSQSF--QNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVST-EEAQAWCRDNGD-  147 (177)
T ss_dssp             HHGGGGTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCH-HHHHHHHHHTTC-
T ss_pred             hHHHHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCH-HHHHHHHHhcCC-
Confidence            223457889999999999754322  223344444332    122467899999999997432222 23333433 333 


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          290 ERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      .+++++||++|.|+++++++|.+.+.+.
T Consensus       148 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          148 YPYFETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            3699999999999999999999988753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.88  E-value=2e-22  Score=168.26  Aligned_cols=162  Identities=17%  Similarity=0.184  Sum_probs=107.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..++|+++|.+|||||||+|+|.+.....  ...+++...........+.  .+.+|||||...+...      .   . 
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~---~-   70 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM------R---D-   70 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCC--CCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTT------H---H-
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHH------H---H-
Confidence            46899999999999999999999776432  2233333333333334444  4678999998754321      1   1 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                        ..+..+|++++|+|+++..+.  ..+..++..+.. ....+.|+++|+||+|+..... ..+....+....+. ++++
T Consensus        71 --~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~  144 (189)
T 4dsu_A           71 --QYMRTGEGFLCVFAINNTKSF--EDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTV-DTKQAQDLARSYGI-PFIE  144 (189)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSS-CHHHHHHHHHHHTC-CEEE
T ss_pred             --HHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEECccCccccc-CHHHHHHHHHHcCC-eEEE
Confidence              234567999999999653222  234445444433 2334688999999999975432 22233344443444 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.|+++++++|.+.+..+
T Consensus       145 ~Sa~~g~gi~~l~~~l~~~~~~~  167 (189)
T 4dsu_A          145 TSAKTRQGVDDAFYTLVREIRKH  167 (189)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999988753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=6.4e-23  Score=168.37  Aligned_cols=164  Identities=18%  Similarity=0.125  Sum_probs=103.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ..++|+++|.+|||||||+|+|.+...... .+..+.+   ........  ...+.+|||||...+.      ..     
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~~~Dt~G~~~~~------~~-----   67 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT---YRQVISCDKSICTLQITDTTGSHQFP------AM-----   67 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE---EEEEEEETTEEEEEEEEECCSCSSCH------HH-----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcccc---EEEEEEECCEEEEEEEEECCCchhhH------HH-----
Confidence            358999999999999999999998764321 1111211   11112222  3468999999986431      11     


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                       ....+..+|++++|+|+++..+... ..+...+..... ..++.|+++|+||+|+.............+....+. +++
T Consensus        68 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~  144 (172)
T 2erx_A           68 -QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC-AFM  144 (172)
T ss_dssp             -HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEE
T ss_pred             -HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEE
Confidence             1123456899999999975422211 122222333321 224678999999999975433222233333333344 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++||++|.|+++++++|.+.+..++
T Consensus       145 ~~Sa~~~~gi~~l~~~l~~~~~~~~  169 (172)
T 2erx_A          145 ETSAKLNHNVKELFQELLNLEKRRT  169 (172)
T ss_dssp             ECBTTTTBSHHHHHHHHHHTCCSSC
T ss_pred             EecCCCCcCHHHHHHHHHHHHhhhh
Confidence            9999999999999999999887654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.88  E-value=6.1e-22  Score=165.16  Aligned_cols=161  Identities=15%  Similarity=0.212  Sum_probs=109.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...++|+++|.+|||||||+|++.+.......+..|.+..    .+...+..+.+|||||...+.            ...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~----~~~~~~~~l~i~Dt~G~~~~~------------~~~   77 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQRKIR------------PYW   77 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE----EEEETTEEEEEEECSSCGGGH------------HHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEE----EEEECCEEEEEEECCCCHHHH------------HHH
Confidence            4679999999999999999999998876555555553322    233457889999999986431            112


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCCc
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYER  291 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~  291 (322)
                      ...+..+|++++|+|+++..+.  .....++..+.. ....+.|+++|+||+|+..... .++....+.    ...+. +
T Consensus        78 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~  153 (181)
T 1fzq_A           78 RSYFENTDILIYVIDSADRKRF--EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRVW-Q  153 (181)
T ss_dssp             HHHHTTCSEEEEEEETTCGGGH--HHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE-E
T ss_pred             HHHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC-HHHHHHHhCchhccCCce-E
Confidence            2346789999999999764322  334455555432 2234688999999999976532 222222221    11222 6


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +++|||++|.|+++++++|.+.+.++
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          154 IQSCSALTGEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTC---
T ss_pred             EEEccCCCCCCHHHHHHHHHHHHHhc
Confidence            89999999999999999999988654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.88  E-value=2.6e-22  Score=180.98  Aligned_cols=168  Identities=28%  Similarity=0.435  Sum_probs=125.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcc-cCCCCCChhhHH-HHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDVK-VRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~~~~~-~~~~~  215 (322)
                      +..+|+++|.||||||||+|+|++..+..++..+++|+....+.+...+..+.++||||+. .+.     .... .....
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~   81 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNKA   81 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH-----HHHHHHHTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch-----hhHHHHHHHH
Confidence            4557999999999999999999999887778888899887777777778899999999986 211     1111 11222


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      +...+..+|++++|+|+++ .+..+..+.   +.+..   .+.|+++|+||+|+.............+.+..++..++++
T Consensus        82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~---~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~i  154 (301)
T 1ega_A           82 ASSSIGDVELVIFVVEGTR-WTPDDEMVL---NKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPI  154 (301)
T ss_dssp             TTSCCCCEEEEEEEEETTC-CCHHHHHHH---HHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred             HHHHHhcCCEEEEEEeCCC-CCHHHHHHH---HHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEE
Confidence            3456788999999999966 443333332   22322   2468999999999987445555666667766666679999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||++|.|+++++++|.+.+.+.
T Consensus       155 SA~~g~~v~~l~~~i~~~l~~~  176 (301)
T 1ega_A          155 SAETGLNVDTIAAIVRKHLPEA  176 (301)
T ss_dssp             CTTTTTTHHHHHHHHHTTCCBC
T ss_pred             ECCCCCCHHHHHHHHHHhCCcC
Confidence            9999999999999999877653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.88  E-value=2.5e-22  Score=169.72  Aligned_cols=169  Identities=14%  Similarity=0.116  Sum_probs=111.7

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....++|+++|.+|||||||+|+|.+..... ...++++.+.....+..++  ..+.+|||||...+.     ..    +
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-----~~----~   89 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG-----GW----L   89 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG-----HH----H
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCccch-----hh----h
Confidence            3457899999999999999999998654322 2223344333333333444  467899999986431     11    1


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                      ..  ..+..+|++++|||+++..+.  ..+..|+..+.... ..+.|+++|+||+|+...+....+....++...+. ++
T Consensus        90 ~~--~~~~~~d~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~-~~  164 (195)
T 3cbq_A           90 RD--HCLQTGDAFLIVFSVTDRRSF--SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KH  164 (195)
T ss_dssp             HH--HHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EE
T ss_pred             HH--HhhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCC-EE
Confidence            11  234678999999999653322  23445665554322 23688999999999976543333334445554555 69


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      +++||++|.|++++|++|.+.+...+-
T Consensus       165 ~e~Sa~~~~~v~~lf~~l~~~i~~~~~  191 (195)
T 3cbq_A          165 IETSAALHHNTRELFEGAVRQIRLRRG  191 (195)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999876543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.88  E-value=1.2e-22  Score=193.66  Aligned_cols=162  Identities=22%  Similarity=0.381  Sum_probs=121.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcc-cCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~~~~~~~~~~~  216 (322)
                      .+++|+++|.||||||||+|+|++.+...+...+++|++.....+...+..+.+|||||+. .+......    .++..+
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~----~gi~~~  317 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVER----LGIERT  317 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCC----CCHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHH----HHHHHH
Confidence            4689999999999999999999998777788899999988777777788999999999997 54322111    123455


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      +..+..+|++|+|+|++++.+..+..+   ++.+     .++|+++|+||+|+.... ..++. ..+.. .+ .++++||
T Consensus       318 ~~~~~~aD~vl~VvD~s~~~s~~~~~i---l~~l-----~~~piivV~NK~DL~~~~-~~~~~-~~~~~-~~-~~~i~iS  385 (482)
T 1xzp_A          318 LQEIEKADIVLFVLDASSPLDEEDRKI---LERI-----KNKRYLVVINKVDVVEKI-NEEEI-KNKLG-TD-RHMVKIS  385 (482)
T ss_dssp             HHHHHHCSEEEEEEETTSCCCHHHHHH---HHHH-----TTSSEEEEEEECSSCCCC-CHHHH-HHHHT-CS-TTEEEEE
T ss_pred             HHHhhcccEEEEEecCCCCCCHHHHHH---HHHh-----cCCCEEEEEECccccccc-CHHHH-HHHhc-CC-CcEEEEE
Confidence            567788999999999987655433332   2333     256899999999997541 22222 22222 12 3699999


Q ss_pred             cCCCCCHHHHHHHHHHHhh
Q 020714          297 GLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~  315 (322)
                      |++|.|+++++++|.+.+.
T Consensus       386 Aktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          386 ALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             GGGTCCHHHHHHHHHHHTH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.88  E-value=4.8e-22  Score=165.54  Aligned_cols=158  Identities=20%  Similarity=0.215  Sum_probs=109.0

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..+.++|+++|.+|||||||+|+|.+..+....+..+.+...    +...+..+.+|||||...+...            
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~------------   81 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE----IVINNTRFLMWDIGGQESLRSS------------   81 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEE----EEETTEEEEEEEESSSGGGTCG------------
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEE----EEECCEEEEEEECCCCHhHHHH------------
Confidence            446799999999999999999999988776666666644322    2346788999999999754331            


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCC
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYE  290 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~  290 (322)
                      ....+..+|++++|+|+++..+.  .....++..+... ...+.|+++|+||+|+..... ..+....+.    ...+. 
T Consensus        82 ~~~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~-  157 (181)
T 2h17_A           82 WNTYYTNTEFVIVVVDSTDRERI--SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQW-  157 (181)
T ss_dssp             GGGGGTTCCEEEEEEETTCTTTH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE-
T ss_pred             HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCC-HHHHHHHhCcccccCCce-
Confidence            12456888999999999775333  3344555544322 134688999999999976421 222222221    11222 


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHH
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      +++++||++|.|+++++++|.+.
T Consensus       158 ~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          158 HIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHTC
T ss_pred             EEEEccCCCCcCHHHHHHHHHhh
Confidence            68999999999999999999764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=172.08  Aligned_cols=166  Identities=19%  Similarity=0.190  Sum_probs=107.8

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....++|+++|.+|||||||+|+|++..+.... .+..+.......+...+  ..+.||||||...+...          
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~----------   90 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDS-NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV----------   90 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC----------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccC-CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH----------
Confidence            356799999999999999999999987654322 12222222222233344  57899999997644321          


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                        ....+..+|++++|+|+++..+.  ..+..|+..+.....++.|+++|+||+|+.............+....+. +++
T Consensus        91 --~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~  165 (200)
T 2o52_A           91 --TRSYYRGAAGALLVYDITSRETY--NSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFL  165 (200)
T ss_dssp             --CHHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEE
T ss_pred             --HHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC-EEE
Confidence              11345778999999999654322  2344566655544345788999999999965433222233344444454 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhc
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +|||++|.|+++++++|.+.+.++
T Consensus       166 ~~SA~~g~gi~~l~~~l~~~i~~~  189 (200)
T 2o52_A          166 ETSALTGENVEEAFLKCARTILNK  189 (200)
T ss_dssp             EECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999888653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=1.1e-21  Score=164.18  Aligned_cols=162  Identities=20%  Similarity=0.190  Sum_probs=108.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+.++|+++|.+|||||||+|+|.+.......+..+.+..    .+...+..+.+|||||...+...            .
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~------------~   77 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESLRSS------------W   77 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE----EEEETTEEEEEEECCC----CGG------------G
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE----EEEECCEEEEEEECCCCHhHHHH------------H
Confidence            4579999999999999999999997766555444443322    23346788999999998654220            1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCCc
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYER  291 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~  291 (322)
                      ...+..+|++++|+|++++.+.  .....++..+... ...+.|+++|+||+|+..... .++....+.    ...+. +
T Consensus        78 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~-~  153 (187)
T 1zj6_A           78 NTYYTNTEFVIVVVDSTDRERI--SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQW-H  153 (187)
T ss_dssp             HHHHTTCCEEEEEEETTCTTTH--HHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCE-E
T ss_pred             HHHhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhhcCCCc-E
Confidence            1235788999999999775433  3344555555432 124688999999999976422 222222222    12233 6


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++++||++|.|+++++++|.+.+....
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~  180 (187)
T 1zj6_A          154 IQACCALTGEGLCQGLEWMMSRLKIRL  180 (187)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred             EEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence            899999999999999999999886643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.88  E-value=2.4e-23  Score=185.34  Aligned_cols=168  Identities=17%  Similarity=0.282  Sum_probs=119.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .++|+++|.+|||||||+|+|++.. ..++..+|+|.+.....+...+..+.+|||||+..+..........+.+.+.+.
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~   81 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence            5789999999999999999999987 467788899988888777777889999999999876532222223334455555


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      ....+|++++|+|+++.  +....+..++...      +.|+++|+||+|+...... ......+....++ +++++||+
T Consensus        82 ~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~-~~~~~~l~~~lg~-~~i~~SA~  151 (274)
T 3i8s_A           82 LSGDADLLINVVDASNL--ERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNI-RIEIDALSARLGC-PVIPLVST  151 (274)
T ss_dssp             HHTCCSEEEEEEEGGGH--HHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTE-EECHHHHHHHHTS-CEEECCCG
T ss_pred             hhcCCCEEEEEecCCCh--HHHHHHHHHHHhc------CCCEEEEEECccchhhhhH-HHHHHHHHHhcCC-CEEEEEcC
Confidence            56889999999999651  1112233333333      4679999999998643210 0011223333344 69999999


Q ss_pred             CCCCHHHHHHHHHHHhhhc
Q 020714          299 KGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~~~  317 (322)
                      +|.|+++++++|.+.+...
T Consensus       152 ~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          152 RGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             GGHHHHHHHHHHHTCCCCC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999887643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.88  E-value=5.9e-22  Score=167.13  Aligned_cols=162  Identities=20%  Similarity=0.184  Sum_probs=106.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC------------------------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD------------------------------  186 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------------------  186 (322)
                      ...++|+++|.+|||||||+|+|++..+.. ...+.+........+...+                              
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            357899999999999999999999876442 1111111122222222222                              


Q ss_pred             ---------ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCC
Q 020714          187 ---------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK  257 (322)
Q Consensus       187 ---------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~  257 (322)
                               ..+.||||||...+..            .....+..+|++++|+|++++.+.  ..+..|+..+....  +
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~i~~~~--~  147 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYAS------------IVPLYYRGATCAIVVFDISNSNTL--DRAKTWVNQLKISS--N  147 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTT------------THHHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHS--C
T ss_pred             ccccCccceeEEEEEECCCcHHHHH------------HHHHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHhhC--C
Confidence                     6789999999875432            112345788999999999654322  23445666555332  2


Q ss_pred             CcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       258 ~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      .|+++|+||+|+ .......+....+....+. +++++||++|.|+++++++|.+.+.++
T Consensus       148 ~piilv~NK~D~-~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          148 YIIILVANKIDK-NKFQVDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             CEEEEEEECTTC-C-CCSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCc-ccccCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            789999999994 3222222223333333455 699999999999999999999988764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.88  E-value=1.8e-22  Score=173.00  Aligned_cols=167  Identities=17%  Similarity=0.097  Sum_probs=99.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....++|+++|.+|||||||+|+|.+..+....  ..++...........+  ..+.+|||||...+...          
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~----------   98 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESY--TPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRL----------   98 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEECCEEEEEEEEECCCchhhhHH----------
Confidence            346799999999999999999999987654322  1222222222223333  36899999998654221          


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChhH------------HHHHH
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVA  280 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~------------~~~~~  280 (322)
                        ....+..+|++++|+|+++..+.  ..+. .|+..+... .++.|+++|+||+|+......            .....
T Consensus        99 --~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~  173 (214)
T 2j1l_A           99 --RPLFYPDASVLLLCFDVTSPNSF--DNIFNRWYPEVNHF-CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG  173 (214)
T ss_dssp             --------CEEEEEEEEETTCHHHH--HHHHHTHHHHHHHH-CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH
T ss_pred             --HHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHHh-CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHH
Confidence              11246788999999999654222  2222 355554432 246789999999999865321            11223


Q ss_pred             HHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       281 ~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      ..+....+..++++|||++|.|+++++++|.+.+.+...
T Consensus       174 ~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          174 QEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             HHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred             HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            445444565579999999999999999999999887643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.88  E-value=2.2e-22  Score=177.50  Aligned_cols=163  Identities=23%  Similarity=0.318  Sum_probs=116.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +.++|+++|.+|||||||+|+|++.... ++..+|+|.......+...+..+.+|||||+..+.....    .+.+.+.+
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----~e~v~~~~   78 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSI----DEKIARDY   78 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSH----HHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCH----HHHHHHHH
Confidence            4689999999999999999999997754 667788998877777777788999999999986644221    11222222


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      -....+|++++|+|+++.    +. ...+...+...   +.|+++|+||+|+........ ....+....++ +++++||
T Consensus        79 ~~~~~~d~ii~V~D~t~~----~~-~~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~-~vi~~SA  148 (258)
T 3a1s_A           79 LLKGDADLVILVADSVNP----EQ-SLYLLLEILEM---EKKVILAMTAIDEAKKTGMKI-DRYELQKHLGI-PVVFTSS  148 (258)
T ss_dssp             HHHSCCSEEEEEEETTSC----HH-HHHHHHHHHTT---TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCS-CEEECCT
T ss_pred             HhhcCCCEEEEEeCCCch----hh-HHHHHHHHHhc---CCCEEEEEECcCCCCccchHH-HHHHHHHHcCC-CEEEEEe
Confidence            223678999999999652    22 22344444433   578999999999864322111 12333333455 6999999


Q ss_pred             CCCCCHHHHHHHHHHHhh
Q 020714          298 LKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~  315 (322)
                      ++|.|+++++++|.+.+.
T Consensus       149 ~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          149 VTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             eCCcCHHHHHHHHHHHhh
Confidence            999999999999999875

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.88  E-value=2.5e-22  Score=167.19  Aligned_cols=165  Identities=17%  Similarity=0.094  Sum_probs=109.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|.+..+..  ...+++.......+...+  ..+.+|||||...+.      ..     
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~-----   82 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA------AI-----   82 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH------HH-----
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCC--cCCCccceEEEEEEEECCEEEEEEEEECCCCcccH------HH-----
Confidence            357899999999999999999999876432  222333333332233343  478999999976431      11     


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                       ....+..+|++++|+|+++..+.  ..+..|+..+... ...+.|+++|+||+|+.............+....+. +++
T Consensus        83 -~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~  158 (187)
T 2a9k_A           83 -RDNYFRSGEGFLCVFSITEMESF--AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYV  158 (187)
T ss_dssp             -HHHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEE
T ss_pred             -HHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-eEE
Confidence             11235678999999999653221  2344444444322 223678999999999976433222333344444455 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++||++|.|+++++++|.+.+.+++
T Consensus       159 ~~Sa~~~~gi~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          159 ETSAKTRANVDKVFFDLMREIRARK  183 (187)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999987653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.88  E-value=1.3e-22  Score=172.56  Aligned_cols=161  Identities=14%  Similarity=0.167  Sum_probs=108.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||++++++.....  ...+++...........+.  .+.+|||||+..+...           
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----------   94 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL-----------   94 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC---CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTT-----------
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCC--CcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHH-----------
Confidence            457999999999999999999999765432  2233333333333344444  4559999999755321           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChhH------------HHHHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAE  281 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~------------~~~~~~  281 (322)
                       ....+..+|++++|+|+++..+..  .+. .|+..+.... ++.|+++|+||+|+......            ......
T Consensus        95 -~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  170 (204)
T 4gzl_A           95 -RPLSYPQTDVFLICFSLVSPASFE--NVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL  170 (204)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred             -HHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHH
Confidence             113567899999999997643322  222 3444444332 46789999999999775431            122334


Q ss_pred             HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       282 ~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      .+....+..++++|||++|.|+++++++|.+.+
T Consensus       171 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          171 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             HHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            455556666799999999999999999998865

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.88  E-value=8.7e-23  Score=168.82  Aligned_cols=163  Identities=18%  Similarity=0.173  Sum_probs=107.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..++|+++|.+|||||||+|+|++..+.... .+..+.+.....+...+  ..+.+|||||...+...            
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~------------   79 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------------   79 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH------------
Confidence            4589999999999999999999976654322 23333333333333344  47899999997654221            


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ....+..+|++++|+|++++.+.  ..+..|+..+......+.|+++|+||+|+.............+....+. +++++
T Consensus        80 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  156 (179)
T 2y8e_A           80 IPSYIRDSTVAVVVYDITNTNSF--HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIET  156 (179)
T ss_dssp             SHHHHHTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEEE
T ss_pred             HHHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCC-eEEEE
Confidence            11235678999999999653221  2344555555433334678999999999975433222222333333344 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      ||++|.|+++++++|.+.+.+
T Consensus       157 Sa~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          157 SAKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             BTTTTBSHHHHHHHHHHTCC-
T ss_pred             eCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999988764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.88  E-value=3.6e-22  Score=170.24  Aligned_cols=163  Identities=16%  Similarity=0.172  Sum_probs=109.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+...+  ..+.+|||||...+...           
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   85 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI-----------   85 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCC-SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC-----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH-----------
Confidence            457899999999999999999999776532 2223333333333333444  57899999998765331           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                       ....+..+|++++|+|+++..+.  ..+..|+..+......+.|+++|+||+|+.... ........+....+. ++++
T Consensus        86 -~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~  160 (213)
T 3cph_A           86 -TTAYYRGAMGIILVYDVTDERTF--TNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKELGI-PFIE  160 (213)
T ss_dssp             -CHHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-SCHHHHHHHHHHHTC-CEEE
T ss_pred             -HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-cCHHHHHHHHHHcCC-EEEE
Confidence             11345778999999999653322  233455555544333467899999999994332 222223333333444 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +||++|.|+++++++|.+.+.+
T Consensus       161 ~Sa~~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          161 SSAKNDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             CBTTTTBSSHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999988765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.8e-22  Score=174.00  Aligned_cols=165  Identities=14%  Similarity=0.122  Sum_probs=109.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+|+|.+|||||||+|+|.+..+..... +..+.......+...+  ..+.||||||...+....          
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------   79 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-STIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT----------   79 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC----------
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCccchhhhH----------
Confidence            457899999999999999999999876543222 2222222222233344  578999999987654321          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                        ...+..+|++|+|+|++++.+.  ..+..|+..+......+.|+++|+||+|+.............+....+. ++++
T Consensus        80 --~~~~~~~d~vilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~  154 (223)
T 3cpj_B           80 --SAYYRGAVGALIVYDISKSSSY--ENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQL-LFTE  154 (223)
T ss_dssp             --GGGTTTCCEEEEEEC-CCHHHH--HHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred             --HHHhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence              1346788999999999664322  2345566666544345688999999999975433223334444444454 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.||++++++|.+.+.+.
T Consensus       155 ~Sa~~~~gi~~l~~~l~~~i~~~  177 (223)
T 3cpj_B          155 TSALNSENVDKAFEELINTIYQK  177 (223)
T ss_dssp             CCCC-CCCHHHHHHHHHHHHTTC
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.88  E-value=9.3e-23  Score=171.39  Aligned_cols=166  Identities=11%  Similarity=0.096  Sum_probs=109.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCC-------CCceeeeEEEE--E-ee--CCccEEEEeCCCcccCCCCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-------TNTTTHEVLGV--M-TK--ADTQICIFDTPGLMLNKSGY  204 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~-------~~~t~~~~~~~--~-~~--~~~~~~l~DtpG~~~~~~~~  204 (322)
                      ...++|+++|.+|||||||++.+.+.........       ...|.......  . ..  ....+.+|||||...+..  
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--   89 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA--   89 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH--
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH--
Confidence            4578999999999999999988876543221110       11111111100  0 11  134689999999875421  


Q ss_pred             ChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcH----HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHH
Q 020714          205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD----SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA  280 (322)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~----~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~  280 (322)
                          .      ....+..+|++++|+|++++.....    ..+..|+..+. ....+.|+++|+||+|+...  ...+..
T Consensus        90 ----~------~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~  156 (198)
T 3t1o_A           90 ----S------RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMV  156 (198)
T ss_dssp             ----H------HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHH
T ss_pred             ----H------HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHH
Confidence                1      1135688999999999974322111    23445666663 23457899999999999764  223334


Q ss_pred             HHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       281 ~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ..+....+..+++++||++|.|+++++++|.+.+.++
T Consensus       157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            5566666664699999999999999999999988765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.88  E-value=1.6e-22  Score=168.41  Aligned_cols=164  Identities=13%  Similarity=0.116  Sum_probs=108.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..++|+++|.+|||||||+++|.+..+...  ...++...........+  ..+.+|||||+..+...            
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------   69 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE--YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL------------   69 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSS--CCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTT------------
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCC--cCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHH------------
Confidence            568999999999999999999987654321  12222222222222333  45679999999754321            


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChhH------------HHHHHHH
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAEQ  282 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~------------~~~~~~~  282 (322)
                      ....+..+|++++|+|++++.+..  ... .|+..+... .++.|+++|+||+|+......            ..+....
T Consensus        70 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  146 (186)
T 1mh1_A           70 RPLSYPQTDVSLICFSLVSPASFE--NVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA  146 (186)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             HHHhccCCcEEEEEEECCChhhHH--HHHHHHHHHHHHh-CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence            113467899999999996543222  222 344444332 126789999999999764321            1122334


Q ss_pred             HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      +....+..+++++||++|.|+++++++|.+.+....
T Consensus       147 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          147 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             HHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence            444455557999999999999999999999987654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.88  E-value=3.5e-22  Score=169.29  Aligned_cols=165  Identities=17%  Similarity=0.098  Sum_probs=109.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....++|+|+|.+|||||||+|+|.+..+..  ...+++.......+...+  ..+.+|||||...+.      ..    
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~----   78 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA------AI----   78 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH------HH----
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH------HH----
Confidence            3457899999999999999999999776432  223333333323333344  378899999976431      11    


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                        ....+..+|++++|+|+++..+.  ..+..|+..+... ...+.|+++|+||+|+........+....+....+. ++
T Consensus        79 --~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~  153 (206)
T 2bov_A           79 --RDNYFRSGEGFLCVFSITEMESF--AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NY  153 (206)
T ss_dssp             --HHHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EE
T ss_pred             --HHHHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCC-eE
Confidence              11235668999999999653221  2344555554432 223678999999999976433222233333333444 69


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +++||++|.|+++++++|.+.+...
T Consensus       154 ~~~Sa~~g~gi~~l~~~l~~~i~~~  178 (206)
T 2bov_A          154 VETSAKTRANVDKVFFDLMREIRAR  178 (206)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            9999999999999999999988653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.88  E-value=6e-22  Score=168.09  Aligned_cols=164  Identities=21%  Similarity=0.153  Sum_probs=108.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|++..+... ..+..+.+.....+...+  ..+.+|||||...+....          
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------   74 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG----------   74 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSS-CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC----------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH----------
Confidence            4578999999999999999999998765422 122222333333333333  478999999987654322          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc----CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc-CCCC
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ----APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH-LPGY  289 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~----~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~-~~~~  289 (322)
                        ...+..+|++++|+|++++.+.  ..+..|+..+...    ...+.|+++|+||+|+....... .....+.. ..+.
T Consensus        75 --~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~  149 (207)
T 1vg8_A           75 --VAFYRGADCCVLVFDVTAPNTF--KTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVAT-KRAQAWCYSKNNI  149 (207)
T ss_dssp             --CGGGTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCH-HHHHHHHHHTTSC
T ss_pred             --HHHHhCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCH-HHHHHHHHhcCCc
Confidence              1346788999999999654322  2233444433221    12357899999999997432222 23333433 3444


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          290 ERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                       +++++||++|.|+++++++|.+.+.+.
T Consensus       150 -~~~~~Sa~~g~gi~~l~~~l~~~~~~~  176 (207)
T 1vg8_A          150 -PYFETSAKEAINVEQAFQTIARNALKQ  176 (207)
T ss_dssp             -CEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             -eEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence             699999999999999999999988653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.88  E-value=2.6e-22  Score=166.41  Aligned_cols=166  Identities=17%  Similarity=0.157  Sum_probs=103.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ...++|+++|.+|||||||+|+|++..+.... .+..+.+.....+...   ...+.+|||||...+..           
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------   73 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQY-KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS-----------   73 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC----CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCccc-CCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh-----------
Confidence            45789999999999999999999987643211 1222222222223332   34789999999764321           


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc----cCCCCCcEEEEEeCCCCCCCh-hHHHHHHHHHhcCCC
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFKHLPG  288 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~----~~~~~~p~ivV~NK~Dl~~~~-~~~~~~~~~~~~~~~  288 (322)
                       .....+..+|++++|+|+++..+.  ..+..|+..+..    ....+.|+++|+||+|+.... .........+.....
T Consensus        74 -~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~  150 (182)
T 1ky3_A           74 -LGVAFYRGADCCVLVYDVTNASSF--ENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG  150 (182)
T ss_dssp             ----CCSTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT
T ss_pred             -hhHHHhhcCCEEEEEEECCChHHH--HHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcC
Confidence             122456889999999999664322  223344444332    122468899999999996432 122233344444223


Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          289 YERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       289 ~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ..+++++||++|.|+++++++|.+.+.++
T Consensus       151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          151 DIPLFLTSAKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             SCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            34699999999999999999999988765

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.88  E-value=5.4e-22  Score=167.13  Aligned_cols=161  Identities=12%  Similarity=0.147  Sum_probs=106.2

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..+.++|+++|.+|||||||+|++.+..+....++.+    .....+...+..+.+|||||...+...            
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------   89 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNICFTVWDVGGQDKIRPL------------   89 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT----EEEEEEEETTEEEEEEECC-----CTT------------
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc----eeEEEEEECCEEEEEEECCCCHhHHHH------------
Confidence            3467999999999999999999998876654322222    222334456788999999998754321            


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCC
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYE  290 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~  290 (322)
                      ....+..+|++++|+|++++.+.  .....++..+.. ....+.|+++|+||+|+..... ..+....+.    ...+. 
T Consensus        90 ~~~~~~~~d~iilv~D~~~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~-  165 (192)
T 2b6h_A           90 WRHYFQNTQGLIFVVDSNDRERV--QESADELQKMLQEDELRDAVLLVFANKQDMPNAMP-VSELTDKLGLQHLRSRTW-  165 (192)
T ss_dssp             HHHHHHTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCE-
T ss_pred             HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCce-
Confidence            11235678999999999764322  334455555432 2234688999999999976421 222222222    11222 


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++++|||++|.|+++++++|.+.+.+
T Consensus       166 ~~~~~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          166 YVQATCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred             EEEECcCCCcCCHHHHHHHHHHHHhc
Confidence            58999999999999999999998764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=9.2e-23  Score=193.58  Aligned_cols=165  Identities=24%  Similarity=0.345  Sum_probs=113.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ..+++|+++|.||||||||+|+|++.....+...+++|++.....+..++..+.+|||||+..+..    .....++.++
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~----~ve~~gi~~~  297 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD----QVEKIGVERS  297 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-----------------------
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh----HHHHHHHHHH
Confidence            457899999999999999999999987777788889988866555667888999999999975422    1122345677


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      +..+..+|++++|+|++++.+..+.   .++..+.     ..|+++|+||+|+.......     .........+++++|
T Consensus       298 ~~~~~~aD~vl~VvD~s~~~~~~~~---~i~~~l~-----~~piivV~NK~Dl~~~~~~~-----~~~~~~~~~~~i~iS  364 (462)
T 3geh_A          298 RQAANTADLVLLTIDAATGWTTGDQ---EIYEQVK-----HRPLILVMNKIDLVEKQLIT-----SLEYPENITQIVHTA  364 (462)
T ss_dssp             -CCCCSCSEEEEEEETTTCSCHHHH---HHHHHHT-----TSCEEEEEECTTSSCGGGST-----TCCCCTTCCCEEEEB
T ss_pred             hhhhhcCCEEEEEeccCCCCCHHHH---HHHHhcc-----CCcEEEEEECCCCCcchhhH-----HHHHhccCCcEEEEE
Confidence            7888999999999999876554442   3444443     25799999999998653321     112222334799999


Q ss_pred             cCCCCCHHHHHHHHHHHhhhcC
Q 020714          297 GLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~~~  318 (322)
                      |++|.|+++++++|.+.+....
T Consensus       365 Aktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          365 AAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             TTTTBSHHHHHHHHHHHHTTSS
T ss_pred             CCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999887543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=5.3e-22  Score=166.63  Aligned_cols=166  Identities=16%  Similarity=0.164  Sum_probs=111.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....++|+++|.+|||||||+|+|++..+.. ..+..+.+.......+......+.||||||...+...           
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   80 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL-----------   80 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence            3457899999999999999999999876542 2222333332222222222457899999998754321           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                       ....+..+|++++|+|++++.+.  ..+..|+..+.... ..+.|+++|+||+|+...... .+....+....+. +++
T Consensus        81 -~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~  155 (195)
T 1x3s_A           81 -TPSYYRGAQGVILVYDVTRRDTF--VKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD-RNEGLKFARKHSM-LFI  155 (195)
T ss_dssp             -HHHHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSC-HHHHHHHHHHTTC-EEE
T ss_pred             -hHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccC-HHHHHHHHHHcCC-EEE
Confidence             11345778999999999653222  23456666665432 246899999999999543222 2223334433454 599


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhc
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++||++|.|+++++++|.+.+.+.
T Consensus       156 ~~Sa~~~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          156 EASAKTCDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EecCCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999988764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=5.5e-22  Score=188.01  Aligned_cols=165  Identities=19%  Similarity=0.277  Sum_probs=112.5

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      .+|+++|.||||||||+|+|++.+.+.+...+|+|++.........+..+.+|||||+.......-   .......+...
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~---~~~~~~~~~~~   78 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDII---SQKMKEVTLNM   78 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCC---CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchH---HHHHHHHHHHH
Confidence            469999999999999999999988777888999999888777777888999999999975321111   11223344566


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      +..+|++++|+|+..+.+..+..+..++...      ++|+++|+||+|+...  ........+.. .++.+++++||++
T Consensus        79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~------~~p~ilv~NK~D~~~~--~~~~~~~~~~~-lg~~~~~~iSA~~  149 (439)
T 1mky_A           79 IREADLVLFVVDGKRGITKEDESLADFLRKS------TVDTILVANKAENLRE--FEREVKPELYS-LGFGEPIPVSAEH  149 (439)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH------TCCEEEEEESCCSHHH--HHHHTHHHHGG-GSSCSCEECBTTT
T ss_pred             HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEeCCCCccc--cHHHHHHHHHh-cCCCCEEEEeccC
Confidence            7899999999999877666666666666653      4679999999998532  11111133433 3554689999999


Q ss_pred             CCCHHHHHHHHHHHhhh
Q 020714          300 GAGLKALTQYLMEQFKD  316 (322)
Q Consensus       300 g~gi~el~~~i~~~l~~  316 (322)
                      |.|+++++++|.+.+.+
T Consensus       150 g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          150 NINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccc
Confidence            99999999999998864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.88  E-value=2.6e-22  Score=171.90  Aligned_cols=165  Identities=15%  Similarity=0.130  Sum_probs=110.8

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC------------CccEEEEeCCCcccCCCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------------DTQICIFDTPGLMLNKSG  203 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~l~DtpG~~~~~~~  203 (322)
                      ....++|+++|.+|||||||+|+|++..+.... .+..+.+.....+...            ...+.||||||...+   
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---   97 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKF-ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF---   97 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEE-EEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH---
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCC-CCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH---
Confidence            456799999999999999999999987543111 1111111111111112            357899999996531   


Q ss_pred             CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC-CCCcEEEEEeCCCCCCChhHHHHHHHH
Q 020714          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKKDLLKVAEQ  282 (322)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~-~~~p~ivV~NK~Dl~~~~~~~~~~~~~  282 (322)
                               .......+..+|++++|+|+++..+  ...+..|+..+..... .+.|+++|+||+|+.............
T Consensus        98 ---------~~~~~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~  166 (217)
T 2f7s_A           98 ---------RSLTTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE  166 (217)
T ss_dssp             ---------HHHHHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ---------HhHHHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHH
Confidence                     1122345678899999999965322  2345567776654432 568999999999997643333333444


Q ss_pred             HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +....+. ++++|||++|.|+++++++|.+.+.+
T Consensus       167 ~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          167 LADKYGI-PYFETSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             HHHHTTC-CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHHCCC-cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5544555 59999999999999999999998765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.88  E-value=8.6e-22  Score=165.08  Aligned_cols=163  Identities=12%  Similarity=0.109  Sum_probs=107.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....++|+++|.+|||||||+|+|.+..+.. ..+..+.+    ...+...+..+.+|||||...+..            
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~Dt~G~~~~~~------------   82 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN----MRKITKGNVTIKLWDIGGQPRFRS------------   82 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEE----EEEEEETTEEEEEEEECCSHHHHT------------
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCcee----EEEEEeCCEEEEEEECCCCHhHHH------------
Confidence            3457999999999999999999999776542 22222222    223445678899999999764211            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc---CCCCC
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPGYE  290 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~  290 (322)
                      .....+..+|++++|+|+++..+  ...+..++..+... ...+.|+++|+||+|+..... ..+....+..   .....
T Consensus        83 ~~~~~~~~~d~ii~v~D~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~  159 (188)
T 1zd9_A           83 MWERYCRGVSAIVYMVDAADQEK--IEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDREI  159 (188)
T ss_dssp             THHHHHTTCSEEEEEEETTCGGG--HHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE
T ss_pred             HHHHHHccCCEEEEEEECCCHHH--HHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC-HHHHHHHhChhhhccCCe
Confidence            11133578899999999976432  23344555554322 224688999999999976422 2222222211   11223


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++++|||++|.|+++++++|.+.+..+
T Consensus       160 ~~~~~SA~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          160 CCYSISCKEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            689999999999999999999988654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.87  E-value=2.3e-22  Score=172.37  Aligned_cols=165  Identities=12%  Similarity=0.113  Sum_probs=110.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee--CCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|++..+....  ..++..........  ....+.+|||||...+....          
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------   92 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETY--VPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR----------   92 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSC--CCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTG----------
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCc--CCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHH----------
Confidence            45799999999999999999999987654221  11222222222222  23578899999987653311          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC------------hhHHHHHHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQ  282 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~------------~~~~~~~~~~  282 (322)
                        ...+..+|++|+|||+++..+... .+..|+..+... .++.|+++|+||+|+...            +....+....
T Consensus        93 --~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  168 (214)
T 3q3j_B           93 --PLCYSDSDAVLLCFDISRPETVDS-ALKKWRTEILDY-CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA  168 (214)
T ss_dssp             --GGGCTTCSEEEEEEETTCTHHHHH-HHTHHHHHHHHH-CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             --HHHcCCCeEEEEEEECcCHHHHHH-HHHHHHHHHHHh-CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence              135678999999999976432222 134455555433 246899999999999753            1223334455


Q ss_pred             HhcCCCCCcEEEeecCCCCC-HHHHHHHHHHHhhhc
Q 020714          283 FKHLPGYERIFMTSGLKGAG-LKALTQYLMEQFKDL  317 (322)
Q Consensus       283 ~~~~~~~~~~~~iSa~~g~g-i~el~~~i~~~l~~~  317 (322)
                      ++...+..++++|||++|.| |+++|++|.+.+...
T Consensus       169 ~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~  204 (214)
T 3q3j_B          169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK  204 (214)
T ss_dssp             HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence            55555665799999999998 999999999988764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.87  E-value=1.9e-21  Score=162.29  Aligned_cols=161  Identities=17%  Similarity=0.205  Sum_probs=110.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...++|+++|.+|||||||+|++.+.......+..+    .....+...+..+.+|||||+..+..            ..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~------------~~   79 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG----FNIKTLEHRGFKLNIWDVGGQKSLRS------------YW   79 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS----EEEEEEEETTEEEEEEEECCSHHHHT------------TG
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc----cceEEEEECCEEEEEEECCCCHhHHH------------HH
Confidence            467999999999999999999999877333333223    22223445678899999999864221            12


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCCc
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYER  291 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~  291 (322)
                      ...+..+|++++|+|++++.+.  .....++..+.. ....+.|+++|+||+|+..... ..+....+.    ...+. +
T Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~  155 (186)
T 1ksh_A           80 RNYFESTDGLIWVVDSADRQRM--QDCQRELQSLLVEERLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHW-R  155 (186)
T ss_dssp             GGGCTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE-E
T ss_pred             HHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC-HHHHHHHhChhhccCCce-E
Confidence            2456889999999999764332  334445554432 2234689999999999976532 222223322    12233 6


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++++||++|.|+++++++|.+.+.++
T Consensus       156 ~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          156 IQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999998765

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.87  E-value=5.2e-22  Score=167.92  Aligned_cols=165  Identities=14%  Similarity=0.099  Sum_probs=107.1

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....++|+++|.+|||||||+|++.+..+.  ....+++.......+...+  ..+.+|||||...+....         
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------   85 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLR---------   85 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSG---------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHh---------
Confidence            346789999999999999999999987643  2223334333333343444  356799999997654311         


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCCh------------hHHHHHH
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVA  280 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~------------~~~~~~~  280 (322)
                         ...+..+|++++|+|+++..+..  .+. .|+..+... .++.|+++|+||+|+....            ....+..
T Consensus        86 ---~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~  159 (201)
T 2q3h_A           86 ---PLCYTNTDIFLLCFSVVSPSSFQ--NVSEKWVPEIRCH-CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA  159 (201)
T ss_dssp             ---GGGGTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHH-CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred             ---HhhcCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHHh-CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence               13467889999999996543222  232 355444432 2367899999999997532            1122233


Q ss_pred             HHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       281 ~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ..+....+..++++|||++|.|+++++++|.+.+...
T Consensus       160 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            4444444554799999999999999999999988765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1e-21  Score=168.14  Aligned_cols=167  Identities=14%  Similarity=0.120  Sum_probs=106.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|++.+.........+.++.+.....+...+.  .+.+|||+|....         ...+.
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~---------~~~l~  105 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE---------NEWLH  105 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH---------HHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch---------hhhHH
Confidence            456899999999999999999999754322222222222222222334443  5678999996520         11111


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                        ...+..+|++++|||+++..+.  ..+..|...+... ...+.|+++|+||+|+...+.........++..++. +++
T Consensus       106 --~~~~~~a~~~ilVydvt~~~sf--~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~-~~~  180 (211)
T 2g3y_A          106 --DHCMQVGDAYLIVYSITDRASF--EKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC-KFI  180 (211)
T ss_dssp             --HCCCCCCSEEEEEEETTCHHHH--HHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEE
T ss_pred             --HHHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCC-EEE
Confidence              2346788999999999654322  2333454444322 224688999999999975433222333344433444 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhc
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +|||++|.||+++|++|.+.+...
T Consensus       181 e~SAk~g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          181 ETSAAVQHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999988654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.87  E-value=5.4e-22  Score=166.21  Aligned_cols=165  Identities=18%  Similarity=0.174  Sum_probs=105.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|.+.....  ...+++.......+...+  ..+.+|||||...+..            
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------   84 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA------------   84 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCcc--ccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH------------
Confidence            456899999999999999999999775432  222333333323333333  4588999999764321            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                      .....+..+|++++|+|+++..+.  ..+..|+..+... ...+.|+++|+||+|+...... .+....+....+. +++
T Consensus        85 ~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~  160 (190)
T 3con_A           85 MRDQYMRTGEGFLCVFAINNSKSF--ADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVD-TKQAHELAKSYGI-PFI  160 (190)
T ss_dssp             -----CTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSC-HHHHHHHHHHHTC-CEE
T ss_pred             HHHHhhCcCCEEEEEEECcCHHHH--HHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCC-HHHHHHHHHHcCC-eEE
Confidence            112346788999999999654322  2334444444322 1235789999999999763222 2223333333455 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      ++||++|.|+++++++|.+.+.+...
T Consensus       161 ~~Sa~~~~gi~~l~~~l~~~~~~~~~  186 (190)
T 3con_A          161 ETSAKTRQGVEDAFYTLVREIRQYRM  186 (190)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999877543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.87  E-value=2.4e-22  Score=168.46  Aligned_cols=165  Identities=16%  Similarity=0.189  Sum_probs=105.7

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      ....++|+++|.+|||||||+|+|.+..+... ....+.+  .....+...+  ..+.+|||||...+..          
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------   84 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD--FRERAVDIDGERIKIQLWDTAGQERFRK----------   84 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCC--EEEEEEEETTEEEEEEEEECCCSHHHHT----------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceE--EEEEEEEECCEEEEEEEEECCCchhhhh----------
Confidence            34579999999999999999999997765432 2222222  2222233333  5789999999753210          


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCc
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER  291 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  291 (322)
                       ......+..+|++++|+|+++..+.  ..+..|+..+... ...+.|+++|+||+|+........+....+....+. +
T Consensus        85 -~~~~~~~~~~d~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~  160 (189)
T 1z06_A           85 -SMVQHYYRNVHAVVFVYDMTNMASF--HSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-P  160 (189)
T ss_dssp             -TTHHHHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-C
T ss_pred             -hhhHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC-E
Confidence             0112345788999999999653222  2344455544332 234688999999999976433333444555554555 6


Q ss_pred             EEEeecCCC---CCHHHHHHHHHHHhhh
Q 020714          292 IFMTSGLKG---AGLKALTQYLMEQFKD  316 (322)
Q Consensus       292 ~~~iSa~~g---~gi~el~~~i~~~l~~  316 (322)
                      ++++||++|   .|+++++++|.+.+.+
T Consensus       161 ~~~~Sa~~~~~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          161 LFETSAKNPNDNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             EEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred             EEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence            999999999   9999999999887754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.87  E-value=1.3e-21  Score=161.90  Aligned_cols=163  Identities=18%  Similarity=0.232  Sum_probs=111.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+.++|+++|.+|||||||+|+|.+..+.. ...++++.+.....+...+..+.+|||||+..+.....           
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-----------   73 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE-QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA-----------   73 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSC-SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-----------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCcccc-CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-----------
Confidence            467899999999999999999999876543 22233333322223445677899999999876644221           


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC------CC-C
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL------PG-Y  289 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~------~~-~  289 (322)
                       ..+..+|++++|+|++++....   ....+..+...   +.|+++|+||+|+.....  .+....+...      .+ .
T Consensus        74 -~~~~~~d~~i~v~d~~~~~~~~---~~~~l~~~~~~---~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~  144 (178)
T 2lkc_A           74 -RGAQVTDIVILVVAADDGVMPQ---TVEAINHAKAA---NVPIIVAINKMDKPEANP--DRVMQELMEYNLVPEEWGGD  144 (178)
T ss_dssp             -SSCCCCCEEEEEEETTCCCCHH---HHHHHHHHGGG---SCCEEEEEETTTSSCSCH--HHHHHHHTTTTCCBTTTTSS
T ss_pred             -HHHhhCCEEEEEEECCCCCcHH---HHHHHHHHHhC---CCCEEEEEECccCCcCCH--HHHHHHHHhcCcChhHcCCc
Confidence             3467889999999997653222   22344444432   567999999999986421  1222222211      11 1


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714          290 ERIFMTSGLKGAGLKALTQYLMEQFKDLGLK  320 (322)
Q Consensus       290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~  320 (322)
                      .+++++||++|.|+++++++|.+.+...++.
T Consensus       145 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~  175 (178)
T 2lkc_A          145 TIFCKLSAKTKEGLDHLLEMILLVSEMEELK  175 (178)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred             ccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence            3699999999999999999999998877654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.87  E-value=6.5e-22  Score=161.04  Aligned_cols=160  Identities=16%  Similarity=0.175  Sum_probs=104.5

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .++|+++|.+|||||||+|++.+.......  .+++...........+  ..+.+|||||...+..      ..      
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~------   68 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEC--DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA------MR------   68 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCC--CTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH------HH------
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCcccc--CCccceEEEEEEEECCEEEEEEEEECCCchhhhH------HH------
Confidence            478999999999999999999877543221  2222222222233333  4578999999864321      11      


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ...+..+|++++|+|+++..+.  ..+..++..+... ...+.|+++|+||+|+..... .......+....+. +++++
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~~  144 (166)
T 2ce2_X           69 DQYMRTGEGFLCVFAINNTKSF--EDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTV-ESRQAQDLARSYGI-PYIET  144 (166)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS-CHHHHHHHHHHHTC-CEEEE
T ss_pred             HHhhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhccc-CHHHHHHHHHHcCC-eEEEe
Confidence            1234567999999999653221  2334455444322 223578999999999976322 22333344443454 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      ||++|.|+++++++|.+.+.+
T Consensus       145 Sa~~~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          145 SAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999998864

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.87  E-value=2e-22  Score=177.61  Aligned_cols=163  Identities=19%  Similarity=0.249  Sum_probs=113.5

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      .+|+++|.||||||||+|+|++.. ..++..+++|.+.....+...+..+.+|||||+..+..........+.+.+.+-.
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~   80 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI   80 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence            479999999999999999999986 4567778999888888777788899999999997654321000222233333333


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      ...+|++++|+|+++    . .....+...+...   +.|+++|+||+|+....... .....+....++ +++++||++
T Consensus        81 ~~~~d~vi~VvDas~----~-~~~~~l~~~l~~~---~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~-~vi~~SA~~  150 (256)
T 3iby_A           81 DLEYDCIINVIDACH----L-ERHLYLTSQLFEL---GKPVVVALNMMDIAEHRGIS-IDTEKLESLLGC-SVIPIQAHK  150 (256)
T ss_dssp             HSCCSEEEEEEEGGG----H-HHHHHHHHHHTTS---CSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCS-CEEECBGGG
T ss_pred             hCCCCEEEEEeeCCC----c-hhHHHHHHHHHHc---CCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCC-CEEEEECCC
Confidence            478999999999965    2 2222334444433   56899999999986432110 011223233344 699999999


Q ss_pred             CCCHHHHHHHHHHH
Q 020714          300 GAGLKALTQYLMEQ  313 (322)
Q Consensus       300 g~gi~el~~~i~~~  313 (322)
                      |.|+++++++|.+.
T Consensus       151 g~gi~el~~~i~~~  164 (256)
T 3iby_A          151 NIGIPALQQSLLHC  164 (256)
T ss_dssp             TBSHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999886

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.87  E-value=2.1e-23  Score=186.24  Aligned_cols=159  Identities=23%  Similarity=0.358  Sum_probs=107.9

Q ss_pred             chHHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCChhhHHHHHHhhCC
Q 020714           23 NPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQEPTWDEKYRERTD   85 (322)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~~~~w~~~~~~~~~   85 (322)
                      .+||.|||.++..+...  ..+.+|+|+++.|||.|..+ +                ||+||++++..+.|..||.+.+.
T Consensus         3 i~w~PGhm~ka~~~~~~--~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~   80 (282)
T 1puj_A            3 IQWFPGHMAKARREVTE--KLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGI   80 (282)
T ss_dssp             ------CTTHHHHHHHH--HGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTC
T ss_pred             CcCCchHHHHHHHHHHH--HHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCC
Confidence            58999999999888766  56689999999999999998 5                79999998888999999988777


Q ss_pred             eEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCee
Q 020714           86 RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV  164 (322)
Q Consensus        86 ~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~  164 (322)
                      .+++.++ ++.+..++.+.          ....+....+.     ...+......++++++|.||||||||+|+|.+...
T Consensus        81 ~~i~iSA~~~~gi~~L~~~----------i~~~l~~~~~~-----~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A           81 RSLSINSVNGQGLNQIVPA----------SKEILQEKFDR-----MRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             CEEECCTTTCTTGGGHHHH----------HHHHHHHHHHH-----HHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             cEEEEECCCcccHHHHHHH----------HHHHHHHHHHH-----HHhcCCCCCCceEEEEecCCCchHHHHHHHhcCce
Confidence            8888888 78888877322          12222221110     01122345678999999999999999999999988


Q ss_pred             eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714          165 AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       165 ~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~  201 (322)
                      +.++..+|+|++.+...   .+..+.++||||+..+.
T Consensus       146 ~~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~~  179 (282)
T 1puj_A          146 AKTGDRPGITTSQQWVK---VGKELELLDTPGILWPK  179 (282)
T ss_dssp             C------------CCEE---ETTTEEEEECCCCCCSC
T ss_pred             eecCCCCCeeeeeEEEE---eCCCEEEEECcCcCCCC
Confidence            88999999998765322   25689999999998654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.87  E-value=4.3e-22  Score=169.99  Aligned_cols=164  Identities=15%  Similarity=0.149  Sum_probs=111.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||++++.+..+..  ...+++.......+...+  ..+.+|||||...+....          
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------   74 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLR----------   74 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCc--cCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHH----------
Confidence            356899999999999999999999776432  222222222222233333  478999999997654321          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChhH--------HHHHHHHHhc
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD--------LLKVAEQFKH  285 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~--------~~~~~~~~~~  285 (322)
                        ...+..+|++++|+|+++..+.  ..+. .|+..+.... ++.|+++|+||+|+......        .......+..
T Consensus        75 --~~~~~~~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~  149 (212)
T 2j0v_A           75 --PLSYRGADIFVLAFSLISKASY--ENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK  149 (212)
T ss_dssp             --CGGGTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred             --HhhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence              1346788999999999653222  2232 4555554332 36789999999999765332        2233444444


Q ss_pred             CCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          286 LPGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       286 ~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ..+..+++++||++|.|+++++++|.+.+...
T Consensus       150 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          150 QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             HHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             HcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence            44555799999999999999999999988764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.87  E-value=2.1e-21  Score=162.87  Aligned_cols=165  Identities=18%  Similarity=0.214  Sum_probs=106.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..+.++|+++|.+|||||||+|+|.+.......  ...|.......+...+..+.+|||||...+..            .
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------~   83 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN------------L   83 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCSTTTGG------------G
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCHHHHH------------H
Confidence            345789999999999999999999987622111  11222333334556678999999999875422            1


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CC--CCCcEEEEEeCCCCCCChhHHHHHHHHH--hcCC-CC
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-AP--PKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLP-GY  289 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~--~~~p~ivV~NK~Dl~~~~~~~~~~~~~~--~~~~-~~  289 (322)
                      ....+..+|++++|+|+++..+  ...+..++..+... ..  .+.|+++|+||+|+..... .++....+  .... ..
T Consensus        84 ~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~  160 (190)
T 2h57_A           84 WEHYYKEGQAIIFVIDSSDRLR--MVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCLENIKDKP  160 (190)
T ss_dssp             GGGGGGGCSEEEEEEETTCHHH--HHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSC
T ss_pred             HHHHHhcCCEEEEEEECCCHHH--HHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC-HHHHHHHhChhhccCCc
Confidence            1245678899999999965321  22344455444322 11  4688999999999976422 22222222  1211 12


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          290 ERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      .++++|||++|.|+++++++|.+.+.+.
T Consensus       161 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  188 (190)
T 2h57_A          161 WHICASDAIKGEGLQEGVDWLQDQIQTV  188 (190)
T ss_dssp             EEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred             eEEEEccCCCCcCHHHHHHHHHHHHHHh
Confidence            3699999999999999999999988654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1.1e-21  Score=164.93  Aligned_cols=162  Identities=14%  Similarity=0.133  Sum_probs=108.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|.+..+..  ....++.......+...+  ..+.+|||||...+...           
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------   82 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPE--EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL-----------   82 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCC--SCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT-----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH-----------
Confidence            356899999999999999999999775432  222233232222333444  56889999998765321           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAE  281 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~  281 (322)
                       ....+..+|++++|+|+++..+..  .+. .|+..+... .++.|+++|+||+|+.....            ...+...
T Consensus        83 -~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  158 (194)
T 2atx_A           83 -RPLSYPMTDVFLICFSVVNPASFQ--NVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ  158 (194)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred             -HHHhcCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHHh-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence             113567899999999996542221  222 344444432 23678999999999976421            1122334


Q ss_pred             HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       282 ~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .+....+..++++|||++|.|+++++++|.+.+.
T Consensus       159 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          159 KLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             HHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            4444445546999999999999999999998875

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=5.3e-22  Score=167.43  Aligned_cols=163  Identities=17%  Similarity=0.170  Sum_probs=106.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|.+..+......  ++...........  ...+.+|||||...  .    ..      
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~----~~------   91 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDP--TLESTYRHQATIDDEVVSMEILDTAGQED--T----IQ------   91 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT--TCCEEEEEEEEETTEEEEEEEEECCCCCC--C----HH------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCC--CCCceEEEEEEECCEEEEEEEEECCCCCc--c----cc------
Confidence            4578999999999999999999998765432221  1111122222233  35689999999874  0    11      


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                       ....+..+|++++|+|+++..+.  ..+..|+..+... ...+.|+++|+||+|+.............+....+. +++
T Consensus        92 -~~~~~~~~d~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~  167 (196)
T 2atv_A           92 -REGHMRWGEGFVLVYDITDRGSF--EEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELAC-AFY  167 (196)
T ss_dssp             -HHHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-EEE
T ss_pred             -hhhhhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCC-eEE
Confidence             11335667999999999654322  2233344433321 224678999999999976433222333333333344 699


Q ss_pred             EeecCCCC-CHHHHHHHHHHHhhhc
Q 020714          294 MTSGLKGA-GLKALTQYLMEQFKDL  317 (322)
Q Consensus       294 ~iSa~~g~-gi~el~~~i~~~l~~~  317 (322)
                      ++||++|. |+++++++|.+.+.+.
T Consensus       168 ~~Sa~~g~~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          168 ECSACTGEGNITEIFYELCREVRRR  192 (196)
T ss_dssp             ECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             EECCCcCCcCHHHHHHHHHHHHHhh
Confidence            99999999 9999999999988764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=4e-22  Score=168.03  Aligned_cols=164  Identities=19%  Similarity=0.155  Sum_probs=104.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ...++|+++|.+|||||||+|+|.+..+.... +..+.+   ........  ...+.+|||||...+.      ..    
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~----   72 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT---YRQVISCDKSVCTLQITDTTGSHQFP------AM----   72 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE---EEEEEEETTEEEEEEEEECCGGGSCH------HH----
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc---eeEEEEECCEEEEEEEEeCCChHHhH------HH----
Confidence            45789999999999999999999986653211 111111   11112222  3468999999986431      11    


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                        ....+..+|++++|+|+++..+... ..+...+..+... .++.|+++|+||+|+...... ......+....+. ++
T Consensus        73 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~  147 (199)
T 2gf0_A           73 --QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGS-VEDIPVMLVGNKCDETQREVD-TREAQAVAQEWKC-AF  147 (199)
T ss_dssp             --HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSC-GGGSCEEEEEECTTCSSCSSC-HHHHHHHHHHHTC-EE
T ss_pred             --HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCCccccC-HHHHHHHHHHhCC-eE
Confidence              1123466899999999965332211 1233334443321 235789999999999764222 2223333333344 69


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      +++||++|.|+++++++|.+.+..+.
T Consensus       148 ~~~Sa~~~~gi~~l~~~l~~~~~~~~  173 (199)
T 2gf0_A          148 METSAKMNYNVKELFQELLTLETRRN  173 (199)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred             EEEecCCCCCHHHHHHHHHHHHhhhh
Confidence            99999999999999999999887653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=6.6e-22  Score=168.42  Aligned_cols=165  Identities=12%  Similarity=0.091  Sum_probs=107.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|.+..+....  ..++...........+  ..+.+|||||...+...           
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   89 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL-----------   89 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT-----------
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC--CCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH-----------
Confidence            45689999999999999999999987654322  1122222212223333  46899999998755321           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH------------HHHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL------------LKVAE  281 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~------------~~~~~  281 (322)
                       ....+..+|++++|+|+++..+.  ... ..|+..+... .++.|+++|+||+|+.......            .....
T Consensus        90 -~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  165 (207)
T 2fv8_A           90 -RPLSYPDTDVILMCFSVDSPDSL--ENIPEKWVPEVKHF-CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGR  165 (207)
T ss_dssp             -GGGGCTTCCEEEEEEETTCHHHH--HHHHHTHHHHHHHH-STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred             -HHhhcCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHh-CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHH
Confidence             11356789999999999653221  122 2344444332 2467899999999997652211            12233


Q ss_pred             HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       282 ~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      .+....+..+++++||++|.|+++++++|.+.+....
T Consensus       166 ~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          166 AMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             HHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence            3443445546999999999999999999999987653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.87  E-value=2.2e-22  Score=168.68  Aligned_cols=163  Identities=16%  Similarity=0.172  Sum_probs=105.8

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....++|+++|.+|||||||+|++++..+..  ....++...........  ...+.+|||||...+..      .    
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~----   85 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFIS--EYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN------C----   85 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC------T----
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCc--ccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh------H----
Confidence            3467999999999999999999999876432  22223322222222223  35678999999875532      0    


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC---CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCC
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA---PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE  290 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~---~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~  290 (322)
                      .   ..+..+|++++|||+++..+.  ..+..|+..+....   ..+.|+++|+||+|+...+....+....+....+. 
T Consensus        86 ~---~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-  159 (187)
T 3c5c_A           86 E---RYLNWAHAFLVVYSVDSRQSF--DSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGC-  159 (187)
T ss_dssp             H---HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-
T ss_pred             H---HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCC-
Confidence            1   235678999999999753222  23445555544321   23678999999999975433333334444444455 


Q ss_pred             cEEEeec-CCCCCHHHHHHHHHHHhhh
Q 020714          291 RIFMTSG-LKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       291 ~~~~iSa-~~g~gi~el~~~i~~~l~~  316 (322)
                      ++++||| ++|.||+++|++|.+.+.+
T Consensus       160 ~~~e~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          160 LFFEVSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             EEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             cEEEEeecCccccHHHHHHHHHHHHhh
Confidence            6999999 8999999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.87  E-value=8.1e-22  Score=167.10  Aligned_cols=162  Identities=11%  Similarity=0.092  Sum_probs=106.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|++.+..+.... .+.++...... +...+  ..+.+|||||...+...           
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~~~~~~-----------   89 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYIAD-IEVDGKQVELALWDTAGQEDYDRL-----------   89 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC-CCSSCCCCEEE-EEETTEEEEEEEECCCCSGGGTTT-----------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCccc-CCcccceEEEE-EEECCEEEEEEEEECCCchhHHHH-----------
Confidence            45689999999999999999999987654321 12222222111 22333  47899999998754321           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCChhH------------HHHHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAE  281 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~------------~~~~~~  281 (322)
                       ....+..+|++++|+|+++..+..  .+ ..|+..+... .++.|+++|+||+|+......            ..+...
T Consensus        90 -~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  165 (201)
T 2gco_A           90 -RPLSYPDTDVILMCFSIDSPDSLE--NIPEKWTPEVKHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGR  165 (201)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHH
T ss_pred             -HHHhcCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHH
Confidence             113567899999999996532221  22 2344444322 236789999999999865321            112233


Q ss_pred             HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       282 ~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .+....+..+++++||++|.|+++++++|.+.+.
T Consensus       166 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          166 DMANRISAFGYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            4444445546999999999999999999998875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=1.9e-22  Score=191.07  Aligned_cols=162  Identities=24%  Similarity=0.394  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      ++|+++|.||||||||+|+|++...+.+...+|+|++.........+..+.+|||||+......    ........+...
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~----~~~~~~~~~~~~   79 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP----FLAQIRQQAEIA   79 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------C----HHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh----HHHHHHHHHHHH
Confidence            6899999999999999999999888888899999999887776677889999999999743221    122233344556


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      +..+|++++|+|+..+.+..+..+..++.   .   .++|+++|+||+|+.......    ..+.. .+..+++++||++
T Consensus        80 ~~~ad~il~vvD~~~~~~~~d~~~~~~l~---~---~~~pvilv~NK~D~~~~~~~~----~~~~~-lg~~~~~~iSA~~  148 (436)
T 2hjg_A           80 MDEADVIIFMVNGREGVTAADEEVAKILY---R---TKKPVVLAVNKLDNTEMRANI----YDFYS-LGFGEPYPISGTH  148 (436)
T ss_dssp             HHHCSEEEEEEETTTCSCHHHHHHHHHHT---T---CCSCEEEEEECCCC-----CC----CSSGG-GSSCCCEECBTTT
T ss_pred             HHhCCEEEEEEeCCCCCCHHHHHHHHHHH---H---cCCCEEEEEECccCccchhhH----HHHHH-cCCCCeEEEeCcC
Confidence            78899999999998876655544444333   2   257899999999987542111    11222 2444689999999


Q ss_pred             CCCHHHHHHHHHHHhhh
Q 020714          300 GAGLKALTQYLMEQFKD  316 (322)
Q Consensus       300 g~gi~el~~~i~~~l~~  316 (322)
                      |.|+++|+++|.+.+.+
T Consensus       149 g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          149 GLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             TBTHHHHHHHHHHTGGG
T ss_pred             CCChHHHHHHHHHhcCc
Confidence            99999999999998864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.87  E-value=2.1e-22  Score=167.22  Aligned_cols=162  Identities=16%  Similarity=0.145  Sum_probs=101.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEE--EeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|++.+..+...  ..+++.......  .......+.+|||||...+...           
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   72 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD--YVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL-----------   72 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTTTTT-----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence            3568999999999999999999987654321  111211111101  1122345679999998755321           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChhH----------HHHHHHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD----------LLKVAEQF  283 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~----------~~~~~~~~  283 (322)
                       ....+..+|++++|+|++++.+.  ..+. .|+..+.... ++.|+++|+||+|+......          .......+
T Consensus        73 -~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~  148 (182)
T 3bwd_D           73 -RPLSYRGADVFILAFSLISKASY--ENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL  148 (182)
T ss_dssp             -GGGGGTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred             -HHhhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence             11346788999999999653222  1222 3444444322 36789999999999765432          22334445


Q ss_pred             hcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          284 KHLPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       284 ~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      ....+..++++|||++|.|+++++++|.+.+.
T Consensus       149 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          149 KKLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             HHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             HHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            54445557999999999999999999998775

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.87  E-value=1.6e-21  Score=164.54  Aligned_cols=168  Identities=14%  Similarity=0.096  Sum_probs=108.9

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      .....++|+++|.+|||||||+|++.+............+.......+. .....+.+|||||...+....-..      
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~------   89 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY------   89 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH------
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc------
Confidence            3456789999999999999999999886443322222222222221121 345789999999987654321000      


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-------hHHHHHHHHHhc-
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-------KDLLKVAEQFKH-  285 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-------~~~~~~~~~~~~-  285 (322)
                         ...+..+|++++|||+++...+....+..++..+.. ..++.|+++|+||+|+....       .........++. 
T Consensus        90 ---~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~  165 (196)
T 3llu_A           90 ---EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYK-VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA  165 (196)
T ss_dssp             ---HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH-HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHh-cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh
Confidence               133567899999999987522233456667776532 23468899999999987632       222333445555 


Q ss_pred             ---CCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          286 ---LPGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       286 ---~~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                         ..+. ++++|||++ .||+++|+.|.+.+
T Consensus       166 ~~~~~~~-~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          166 GLEKLHL-SFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TCTTSCE-EEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hhhcCCc-ceEEEEech-hhHHHHHHHHHHHh
Confidence               3444 699999999 99999999998865

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.87  E-value=8.8e-22  Score=164.53  Aligned_cols=166  Identities=20%  Similarity=0.284  Sum_probs=113.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +.++|+++|.+|||||||+|+|.+... .....+++|.+.....+...+..+.+|||||+..+....    ....+...+
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----~~~~~~~~~   80 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDY   80 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSS----HHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccccc----HHHHHHHHH
Confidence            468999999999999999999998754 344557777776666666778899999999998654321    111122221


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      -....+|++++|+|.++     ......++..+...   +.|+++|+||+|+....... .....+....+. +++++||
T Consensus        81 ~~~~~~~~~i~v~d~~~-----~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~-~~~~~Sa  150 (188)
T 2wjg_A           81 IINEKPDLVVNIVDATA-----LERNLYLTLQLMEM---GANLLLALNKMDLAKSLGIE-IDVDKLEKILGV-KVVPLSA  150 (188)
T ss_dssp             HHHHCCSEEEEEEEGGG-----HHHHHHHHHHHHTT---TCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTS-CEEECBG
T ss_pred             HhccCCCEEEEEecchh-----HHHHHHHHHHHHhc---CCCEEEEEEhhhccccccch-HHHHHHHHHhCC-CeEEEEe
Confidence            11235799999999853     22344555555443   56899999999986432111 112223332344 6999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhcC
Q 020714          298 LKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ++|.|+++++++|.+.+..+.
T Consensus       151 ~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          151 AKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             GGTBSHHHHHHHHHHHHTTC-
T ss_pred             cCCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999987654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.86  E-value=5e-22  Score=176.41  Aligned_cols=162  Identities=19%  Similarity=0.301  Sum_probs=112.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .++|+++|.||||||||+|+|++.. ..++..+|+|.....+.+.. +..+.+|||||+..+.....    .+.+.+.+-
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~----~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSP----EAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSH----HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCCh----HHHHHHHHH
Confidence            5789999999999999999999875 34667788888877666555 78899999999986643221    122222222


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      ....+|++++|+|+++.    + ....+...+...   +.|+++|+||+|+....... .....+....+. +++++||+
T Consensus        77 ~~~~~d~vi~V~D~t~~----e-~~~~~~~~l~~~---~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~-~vi~~SA~  146 (272)
T 3b1v_A           77 LSQRADSILNVVDATNL----E-RNLYLTTQLIET---GIPVTIALNMIDVLDGQGKK-INVDKLSYHLGV-PVVATSAL  146 (272)
T ss_dssp             HTTCCSEEEEEEEGGGH----H-HHHHHHHHHHHT---CSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTS-CEEECBTT
T ss_pred             hcCCCCEEEEEecCCch----H-hHHHHHHHHHhc---CCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCC-CEEEEEcc
Confidence            22468999999999642    2 223343443322   57899999999986422111 112223333344 69999999


Q ss_pred             CCCCHHHHHHHHHHHhhh
Q 020714          299 KGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~~  316 (322)
                      +|.|+++++++|.+.+..
T Consensus       147 ~g~gi~el~~~i~~~~~~  164 (272)
T 3b1v_A          147 KQTGVDQVVKKAAHTTTS  164 (272)
T ss_dssp             TTBSHHHHHHHHHHSCTT
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999987653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.86  E-value=5.1e-22  Score=165.81  Aligned_cols=163  Identities=13%  Similarity=0.140  Sum_probs=106.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|.+..+.... .+ +........+...  ...+.+|||||...+...           
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   71 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-VP-TVFENYTASFEIDTQRIELSLWDTSGSPYYDNV-----------   71 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CC-CSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT-----------
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CC-ccceeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence            35689999999999999999999987653211 11 1111111122223  356899999998755321           


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCCh------------hHHHHHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAE  281 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~------------~~~~~~~~  281 (322)
                       ....+..+|++++|+|+++..+.  ..+ ..|+..+... .++.|+++|+||+|+....            ....+...
T Consensus        72 -~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  147 (184)
T 1m7b_A           72 -RPLSYPDSDAVLICFDISRPETL--DSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA  147 (184)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred             -HHhhcCCCcEEEEEEECCCHHHH--HHHHHHHHHHHHHH-CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHH
Confidence             11346789999999999654322  222 3444444332 2468899999999997431            11122334


Q ss_pred             HHhcCCCCCcEEEeecC-CCCCHHHHHHHHHHHhhh
Q 020714          282 QFKHLPGYERIFMTSGL-KGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       282 ~~~~~~~~~~~~~iSa~-~g~gi~el~~~i~~~l~~  316 (322)
                      .+....+..++++|||+ +|.|++++|++|.+.+.+
T Consensus       148 ~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          148 NMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             HHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            44444444479999999 699999999999998764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.86  E-value=2.5e-22  Score=170.34  Aligned_cols=166  Identities=20%  Similarity=0.220  Sum_probs=81.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCcee-eeEEEEEeeC----CccEEEEeCCCcccCCCCCChhhHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKA----DTQICIFDTPGLMLNKSGYSHKDVKV  211 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~-~~~~~~~~~~----~~~~~l~DtpG~~~~~~~~~~~~~~~  211 (322)
                      ...++|+++|.+|||||||+|+|.+...........++. +.....+...    ...+.+|||||+..+           
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------   86 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY-----------   86 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH-----------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH-----------
Confidence            456899999999999999999999872211222222221 2222223334    347899999998532           


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC---CCCcEEEEEeCCCCCC-ChhHHHHHHHHHhcCC
Q 020714          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP---PKQKRVLCMNKVDLVT-KKKDLLKVAEQFKHLP  287 (322)
Q Consensus       212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~---~~~p~ivV~NK~Dl~~-~~~~~~~~~~~~~~~~  287 (322)
                       .......+..+|++++|+|++++.+.  ..+..|+..+.....   .+.|+++|+||+|+.. ......+....+....
T Consensus        87 -~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~  163 (208)
T 2yc2_C           87 -KEQISQYWNGVYYAILVFDVSSMESF--ESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN  163 (208)
T ss_dssp             -HHHHSTTCCCCCEEEEEEETTCHHHH--HHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT
T ss_pred             -HHHHHHHHhhCcEEEEEEECCCHHHH--HHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc
Confidence             11233457889999999999654322  344566666654333   4688999999999976 4333233344444444


Q ss_pred             CCCcEEEeecCC-CCCHHHHHHHHHHHhhhc
Q 020714          288 GYERIFMTSGLK-GAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       288 ~~~~~~~iSa~~-g~gi~el~~~i~~~l~~~  317 (322)
                      +. +++++||++ |.|+++++++|.+.+.+.
T Consensus       164 ~~-~~~~~Sa~~~~~gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          164 TL-DFFDVSANPPGKDADAPFLSIATTFYRN  193 (208)
T ss_dssp             TC-EEEECCC-------CHHHHHHHHHHHHH
T ss_pred             CC-EEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence            54 699999999 999999999999987653

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.86  E-value=3.4e-23  Score=175.25  Aligned_cols=165  Identities=19%  Similarity=0.193  Sum_probs=107.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|++..+.... .+.++.+.....+...+  ..+.+|||||...+.....         
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------  100 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY-ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS---------  100 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH-HHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSC---------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc-CCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHH---------
Confidence            45799999999999999999999987644221 12223233333333444  5689999999876543221         


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                         ..+..+|++++|+|+++..+  ...+..|+..+......+.|+++|+||+|+.............+....+. ++++
T Consensus       101 ---~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~  174 (199)
T 3l0i_B          101 ---SYYRGAHGIIVVYDVTDQES--FNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PFLE  174 (199)
T ss_dssp             ---C--CCCSEEEECC-CCCSHH--HHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTC-CBCC
T ss_pred             ---HHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCC-eEEE
Confidence               34678899999999976432  23455677777665555789999999999976533222223444555555 5999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||++|.|+++++++|.+.+.++
T Consensus       175 vSA~~g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          175 TSAKNATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             CCC---HHHHHHHHHHTTTTTTT
T ss_pred             EECCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999887653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.86  E-value=1.7e-21  Score=173.14  Aligned_cols=165  Identities=19%  Similarity=0.289  Sum_probs=117.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .++|+++|.+|||||||+|+|++... .++..+++|.......+...+..+.+|||||+..+....    ....+.+.+.
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~~~~~~~~~   77 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS----IDELIARNFI   77 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC----HHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC----HHHHHHHHhh
Confidence            57899999999999999999999876 677888888888777777788889999999998654422    2222333333


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      ....+|++++|+|+++.    .... .+...+....  ..|+++|+||+|+........ ....+.+..+. +++++||+
T Consensus        78 ~~~~~d~vi~v~D~~~~----~~~~-~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~-~~~~~Sa~  148 (271)
T 3k53_A           78 LDGNADVIVDIVDSTCL----MRNL-FLTLELFEME--VKNIILVLNKFDLLKKKGAKI-DIKKMRKELGV-PVIPTNAK  148 (271)
T ss_dssp             HTTCCSEEEEEEEGGGH----HHHH-HHHHHHHHTT--CCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSS-CEEECBGG
T ss_pred             hccCCcEEEEEecCCcc----hhhH-HHHHHHHhcC--CCCEEEEEEChhcCcccccHH-HHHHHHHHcCC-cEEEEEeC
Confidence            44789999999999652    2222 2222222221  267999999999764321100 02223333344 69999999


Q ss_pred             CCCCHHHHHHHHHHHhhhc
Q 020714          299 KGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~~~  317 (322)
                      +|.|+++++++|.+.+...
T Consensus       149 ~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          149 KGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             GTBTHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHhcc
Confidence            9999999999999988654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.86  E-value=3.4e-21  Score=162.27  Aligned_cols=165  Identities=15%  Similarity=0.131  Sum_probs=101.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..++|+++|.+|||||||+|++.+.........+.++.+.....+..++.  .+.+|||+|........         . 
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~---------~-   74 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL---------H-   74 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTT---------G-
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhH---------H-
Confidence            46899999999999999999998643221222222222222222334443  56789999975321100         0 


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                       ...+..+|++++|||+++..+..  ....|...+... ...+.|+++|+||+|+...+.........++...+. ++++
T Consensus        75 -~~~~~~~~~~i~v~dv~~~~s~~--~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~-~~~e  150 (192)
T 2cjw_A           75 -DHCMQVGDAYLIVYSITDRASFE--KASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDX-KFIE  150 (192)
T ss_dssp             -GGHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred             -HhhcccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCC-ceEE
Confidence             12345679999999997643322  233343333221 224678999999999975433222333444444444 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      |||++|.||+++|++|.+.+..
T Consensus       151 ~SA~~g~~v~~lf~~l~~~~~~  172 (192)
T 2cjw_A          151 TSAAVQHNVKELFEGIVRQVRL  172 (192)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             eccccCCCHHHHHHHHHHHHHh
Confidence            9999999999999999998754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.86  E-value=5.2e-22  Score=170.73  Aligned_cols=165  Identities=15%  Similarity=0.155  Sum_probs=114.0

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCC-eeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGT-KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      .....++|+++|.+|||||||+|+++.. .........+++...........+..+.+|||||...+.....        
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------   82 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD--------   82 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCH--------
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHH--------
Confidence            3456799999999999999999995543 3444566777776665544444456789999999876543211        


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                          ..+..+|++++|+|+++..+.  ..+..|+..+... .++.|+++|+||+|+.......  ....+....+. +++
T Consensus        83 ----~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~-~~~  152 (221)
T 3gj0_A           83 ----GYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNL-QYY  152 (221)
T ss_dssp             ----HHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTC-EEE
T ss_pred             ----HHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHh-CCCCCEEEEEECCccccccccH--HHHHHHHHcCC-EEE
Confidence                235678999999999764322  2334455555432 2367899999999997643211  11112222233 699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhc
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +|||++|.|+++++++|.+.+...
T Consensus       153 ~~Sa~~~~gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          153 DISAKSNYNFEKPFLWLARKLIGD  176 (221)
T ss_dssp             ECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999998764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.85  E-value=1.2e-21  Score=167.00  Aligned_cols=163  Identities=13%  Similarity=0.137  Sum_probs=106.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|.+..+.... .+ +........+...  ...+.+|||||...+....          
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------   93 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-VP-TVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR----------   93 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CC-CSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTG----------
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CC-ccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHH----------
Confidence            45789999999999999999999987654211 11 1111112222233  3568999999987653211          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCCh------------hHHHHHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAE  281 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~------------~~~~~~~~  281 (322)
                        ...+..+|++++|||+++..+.  ..+ ..|+..+... .++.|+++|+||+|+....            ....+...
T Consensus        94 --~~~~~~~d~~ilv~D~~~~~s~--~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  168 (205)
T 1gwn_A           94 --PLSYPDSDAVLICFDISRPETL--DSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA  168 (205)
T ss_dssp             --GGGCTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred             --HhhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHH-CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHH
Confidence              1346789999999999653222  222 3454444432 2468899999999997431            11122334


Q ss_pred             HHhcCCCCCcEEEeecC-CCCCHHHHHHHHHHHhhh
Q 020714          282 QFKHLPGYERIFMTSGL-KGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       282 ~~~~~~~~~~~~~iSa~-~g~gi~el~~~i~~~l~~  316 (322)
                      .++...+..++++|||+ +|.|++++|++|.+.+.+
T Consensus       169 ~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          169 NMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             HHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            44444444469999999 689999999999988764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.85  E-value=2e-20  Score=170.68  Aligned_cols=162  Identities=15%  Similarity=0.145  Sum_probs=107.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+.++|+|+|.+|||||||+|+|.+..+....+    |.......+...+..+.||||||...+...            .
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~p----T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------------~  226 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGGQDKIRPL------------W  226 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEE----ETTEEEEEEEETTEEEEEEECC-----CCS------------H
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCccc----ccceEEEEEecCcEEEEEEECCCCHhHHHH------------H
Confidence            356799999999999999999999877554332    333333445567788999999997654321            1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCC---CCCcE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERI  292 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~  292 (322)
                      ...+..+|++|+|||+++..+.  ..+..++.. +.....++.|+++|+||+|+..... ..++...+....   ...++
T Consensus       227 ~~~~~~ad~vilV~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~  303 (329)
T 3o47_A          227 RHYFQNTQGLIFVVDSNDRERV--NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYI  303 (329)
T ss_dssp             HHHHTTEEEEEEEEETTCSSSH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTCTTCCSSCEEE
T ss_pred             HHHhccCCEEEEEEECCchHHH--HHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC-HHHHHHHhchhhhhcCCCEE
Confidence            1235678999999999765433  233333333 3333345789999999999986532 223333332211   12258


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++|||++|.||++++++|.+.+.++
T Consensus       304 ~~vSAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          304 QATCATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999999988754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.85  E-value=6.9e-21  Score=167.97  Aligned_cols=178  Identities=15%  Similarity=0.129  Sum_probs=118.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCC-ceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ...++|+|+|.+|||||||+|+|++.........+. +|...........+..+.||||||+..+.... ..........
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~-~~~~~~i~~~   98 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC-EALYKEVQRC   98 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC-HHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH-HHHHHHHHHH
Confidence            457899999999999999999999887555444444 67776666666778899999999998664322 1212222344


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe-CCCCCCChhH----------HHHHHHHHh
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN-KVDLVTKKKD----------LLKVAEQFK  284 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N-K~Dl~~~~~~----------~~~~~~~~~  284 (322)
                      ....+..+|++++|+|++. ....+..+..++..+..... ..|.++|+| |+|+......          .......+.
T Consensus        99 ~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  176 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG  176 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred             HHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC
Confidence            4456788999999999974 34344455566665532211 245666666 9999854211          111222222


Q ss_pred             cCCC-CCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          285 HLPG-YERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       285 ~~~~-~~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ..+. +.+ +++||++|.|+++++++|.+.+....
T Consensus       177 ~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          177 GRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             TCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEecC-cccccccHHHHHHHHHHHHHHHHhCC
Confidence            2211 222 88999999999999999999987743

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.85  E-value=1.7e-20  Score=169.60  Aligned_cols=169  Identities=18%  Similarity=0.200  Sum_probs=119.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHH-HH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRV-ES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~  215 (322)
                      ..++|+++|.+|||||||+|++++......+..+++|.......... ++..+.+|||||...+        ....+ ..
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~   73 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF--------MENYFTKQ   73 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH--------HHHHHTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH--------hhhhhhhH
Confidence            46899999999999999999999876555566677777766665543 5678999999998643        11011 11


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCC--Chh----HHHHHHHHHhcCCC
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVT--KKK----DLLKVAEQFKHLPG  288 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~--~~~----~~~~~~~~~~~~~~  288 (322)
                      ....+..+|++++|+|+++..+..+. .+..++..+... .++.|+++|+||+|+..  .+.    ........+....+
T Consensus        74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g  152 (307)
T 3r7w_A           74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG  152 (307)
T ss_dssp             HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh-CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence            22345789999999999875443332 234445554432 34689999999999987  332    33355666777776


Q ss_pred             C--CcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          289 Y--ERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       289 ~--~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      .  .+++++||++ .|+.+++..+.+.+..
T Consensus       153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             CCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             CCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence            3  5799999999 8999999988876543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.84  E-value=2.7e-20  Score=155.44  Aligned_cols=163  Identities=17%  Similarity=0.208  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCCh---hhHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH---KDVKVRVESA  216 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---~~~~~~~~~~  216 (322)
                      ++|+++|.+|||||||+|++.+..+. ....+++|........  .  .+.+|||||+..... ...   +.........
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMG-LPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTT-SCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEec--C--CEEEEECCCcccccc-CCHHHHHHHHHHHHHH
Confidence            58999999999999999999987643 4455666665544322  2  789999999753221 111   1112222223


Q ss_pred             Hhh-cccccEEEEEEeCCCCCCCcHHHHHHH------------HHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH
Q 020714          217 WSA-VNLFEVLMVVFDVHRHLTSPDSRVIRL------------IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF  283 (322)
Q Consensus       217 ~~~-~~~ad~ii~v~D~s~~~~~~~~~~~~~------------l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~  283 (322)
                      +.. ...+++++.|+|.+.    .......|            +..+..   .+.|+++|+||+|+....   ......+
T Consensus        76 ~~~~~~~~~~v~~v~d~~s----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~---~~~~~~~  145 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKA----APEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNV---QEVINFL  145 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTH----HHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCH---HHHHHHH
T ss_pred             HHhhhccCCEEEEEEcchh----hhhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCcH---HHHHHHH
Confidence            333 455677777777632    11111111            122222   357899999999998764   2223333


Q ss_pred             hcCCCCC------cEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          284 KHLPGYE------RIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       284 ~~~~~~~------~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      ....+..      ++++|||++|.|+++++++|.+.+.+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          146 AEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             HHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             HHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            3333332      4799999999999999999999887653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.84  E-value=3.2e-21  Score=180.81  Aligned_cols=164  Identities=25%  Similarity=0.306  Sum_probs=113.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc-cEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ...++|+++|.+|+|||||+|+|++.....++..+++|.+.....+...+. .+.+|||||+..+......     .+..
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~-----~~~~  106 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRL-----RVEK  106 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCC-----CHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHH-----HHHH
Confidence            456899999999999999999999988777777888888776666655554 8999999999876432211     1334


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      +...+..+|++++|+|+  ........+..++...      +.|+++|+||+|+......  +....+.+..+. +++++
T Consensus       107 ~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~-~v~~v  175 (423)
T 3qq5_A          107 ARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEA-KVLLV  175 (423)
T ss_dssp             HHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT------TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTC-CCCCC
T ss_pred             HHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc------CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCC-CEEEE
Confidence            55667889999999998  2233333344444433      4679999999999876543  445666666666 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      ||++|.|+++++++|.+.+.+
T Consensus       176 SAktg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          176 SALQKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             SSCCTTSTTTHHHHHHHHSCC
T ss_pred             ECCCCCCHHHHHHHHHHhhhh
Confidence            999999999999999998843

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.84  E-value=6.6e-21  Score=174.21  Aligned_cols=171  Identities=19%  Similarity=0.294  Sum_probs=116.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ..+|+++|.||||||||+|+|++.+. .+...+.+|.......+...+ ..+.+|||||+.......  ..+   ....+
T Consensus       158 la~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~--~~l---~~~fl  231 (342)
T 1lnz_A          158 LADVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG--VGL---GHQFL  231 (342)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT--TTT---HHHHH
T ss_pred             cCeeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCccccccc--chh---HHHHH
Confidence            34689999999999999999987653 346667778777666665554 789999999986532111  111   12234


Q ss_pred             hhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccC--CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          218 SAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~--~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ..+..+|++|+|+|+++.. ......+..++.++....  ...+|+++|+||+|+....+..+++...+..   ..++++
T Consensus       232 ~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~---~~~v~~  308 (342)
T 1lnz_A          232 RHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD---DYPVFP  308 (342)
T ss_dssp             HHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS---CCCBCC
T ss_pred             HHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc---CCCEEE
Confidence            4566789999999997521 122233444555554322  2468899999999998644333333333321   136899


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhcC
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      +||++|.|+++|+++|.+.+.+..
T Consensus       309 iSA~tg~gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          309 ISAVTREGLRELLFEVANQLENTP  332 (342)
T ss_dssp             CSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred             EECCCCcCHHHHHHHHHHHHhhCc
Confidence            999999999999999999987653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=4.1e-21  Score=182.84  Aligned_cols=164  Identities=24%  Similarity=0.386  Sum_probs=105.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ...+|+++|.||||||||+|+|++.+...+...+|+|++.........+..+.+|||||+.....    .........+.
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~----~~~~~~~~~~~   97 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE----PFLAQIRQQAE   97 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC----------CCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcch----HHHHHHHHHHH
Confidence            35789999999999999999999998888889999999988777767788999999999873221    11222333444


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++|+|+|...+.+..+..+..++..      .++|+++|+||+|+......    ...+.. .+..+++++||
T Consensus        98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~------~~~pvilV~NK~D~~~~~~~----~~e~~~-lg~~~~~~iSA  166 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVTAADEEVAKILYR------TKKPVVLAVNKLDNTEMRAN----IYDFYS-LGFGEPYPISG  166 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT------CCSCEEEEEECC-------------CCSGG-GSSSSEEECCT
T ss_pred             hhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH------cCCCEEEEEECccchhhhhh----HHHHHH-cCCCceEEeec
Confidence            56788999999999977666655555444432      35789999999998653211    111222 24446789999


Q ss_pred             CCCCCHHHHHHHHHHHhhh
Q 020714          298 LKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~  316 (322)
                      ++|.|++++++++.+.+..
T Consensus       167 ~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGGG
T ss_pred             ccccchHHHHHHHHhhccc
Confidence            9999999999999987754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.74  E-value=1.6e-22  Score=171.71  Aligned_cols=162  Identities=13%  Similarity=0.129  Sum_probs=105.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee--CCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      .+.++|+++|.+|||||||+|++.+..+...  ...++..........  ....+.+|||||...+..            
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------   93 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE--YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR------------   93 (204)
Confidence            4578999999999999999999987654321  122222222211222  234567999999865422            


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh------------hHHHHHHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAEQ  282 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~------------~~~~~~~~~  282 (322)
                      .....+..+|++++|+|++++.+.... ...|+..+... .++.|+++|+||+|+....            .........
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~  171 (204)
T 3th5_A           94 LRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA  171 (204)
Confidence            111245678999999999775444332 11344444332 2267899999999997643            112223344


Q ss_pred             HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      +....+..++++|||++|.|+++++++|.+.+
T Consensus       172 ~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            44445554689999999999999999998765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.84  E-value=9.5e-21  Score=158.24  Aligned_cols=167  Identities=12%  Similarity=0.186  Sum_probs=103.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEE-----eeCCccEEEEeCCCcccCCCCCChhhHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVM-----TKADTQICIFDTPGLMLNKSGYSHKDVKVR  212 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~-----~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  212 (322)
                      .++|+++|.+|||||||+|++.+......+. .+....+.....+     ......+.+|||||+..+....        
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------   73 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH--------   73 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS--------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh--------
Confidence            3789999999999999999999853221111 1111112111111     1135678999999986543211        


Q ss_pred             HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH---HHHHHHHhcCCCC
Q 020714          213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGY  289 (322)
Q Consensus       213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~---~~~~~~~~~~~~~  289 (322)
                          ...+..++++++|+|++++.. ....+..|+..+... .++.|+++|+||+|+.......   ......++...++
T Consensus        74 ----~~~~~~~~~~i~v~d~~~~~~-s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  147 (184)
T 2zej_A           74 ----PHFMTQRALYLAVYDLSKGQA-EVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF  147 (184)
T ss_dssp             ----HHHHHHSEEEEEEEEGGGCHH-HHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS
T ss_pred             ----HHHccCCcEEEEEEeCCcchh-HHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC
Confidence                122456799999999966421 112345566655432 2367899999999997653322   3344556655666


Q ss_pred             C---cEEEeecCCCC-CHHHHHHHHHHHhhhcCC
Q 020714          290 E---RIFMTSGLKGA-GLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       290 ~---~~~~iSa~~g~-gi~el~~~i~~~l~~~~~  319 (322)
                      .   +++++||++|. |+++|++.|.+.+...+.
T Consensus       148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          148 PAIRDYHFVNATEESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             CEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred             cchhheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence            4   38999999997 999999999998876543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.84  E-value=2.2e-20  Score=159.51  Aligned_cols=162  Identities=14%  Similarity=0.167  Sum_probs=97.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ...++|+++|.+|||||||+++|++..+....  +.++.....  +...   +..+.+|||||+..+         ...+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~---------~~~~   71 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ--TSITDSSAI--YKVNNNRGNSLTLIDLPGHESL---------RFQL   71 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBC--CCCSCEEEE--EECSSTTCCEEEEEECCCCHHH---------HHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccc--CCcceeeEE--EEecCCCccEEEEEECCCChhH---------HHHH
Confidence            35689999999999999999999987654332  222222222  3333   567999999998632         1101


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cc--cCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHh---
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GK--QAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFK---  284 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~--~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~---  284 (322)
                        ....+..+|++++|+|+++.. ........++..+ ..  ....+.|+++|+||+|+.....   ........+.   
T Consensus        72 --~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~  148 (214)
T 2fh5_B           72 --LDRFKSSARAVVFVVDSAAFQ-REVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLR  148 (214)
T ss_dssp             --HHHHGGGEEEEEEEEETTTHH-HHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHhhCCEEEEEEECCCcC-HHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHh
Confidence              112368899999999996411 1111222322222 11  1233578999999999986532   1111111111   


Q ss_pred             ----------------c-CCC-------------CCcEEEeecCCC------CCHHHHHHHHHHHh
Q 020714          285 ----------------H-LPG-------------YERIFMTSGLKG------AGLKALTQYLMEQF  314 (322)
Q Consensus       285 ----------------~-~~~-------------~~~~~~iSa~~g------~gi~el~~~i~~~l  314 (322)
                                      . ..+             ..++++|||++|      .||+++|++|.+.+
T Consensus       149 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          149 VTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             HHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             ccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                            1 111             336999999999      99999999998753

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.83  E-value=5.9e-20  Score=167.09  Aligned_cols=164  Identities=14%  Similarity=0.147  Sum_probs=110.8

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....++|+++|.+|||||||++++.+..+.  ....+++.......+...+.  .+.+|||||...+..           
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------  218 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR-----------  218 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT-----------
T ss_pred             ccceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH-----------
Confidence            456799999999999999999999876543  22334444444333444444  455999999875532           


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHH
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVA  280 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~  280 (322)
                       .....+..+|++++|+|++++.+..  .+. .|+..+.... ++.|+++|+||+|+.....            ......
T Consensus       219 -~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~  294 (332)
T 2wkq_A          219 -LRPLSYPQTDVFLICFSLVSPASFH--HVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG  294 (332)
T ss_dssp             -TGGGGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred             -HHHHhccCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence             1123567899999999996543222  222 3444443322 2678999999999965421            112233


Q ss_pred             HHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       281 ~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ..+....+..++++|||++|.|+++++++|.+.+..
T Consensus       295 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          295 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence            444544565579999999999999999999988764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.79  E-value=9.4e-19  Score=152.38  Aligned_cols=177  Identities=15%  Similarity=0.188  Sum_probs=107.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCC-CCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ....++|+++|.+|||||||+|+|++......... .++|...........+..+.||||||+......  .......+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~--~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP--NAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-------CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCC--HHHHHHHHH
Confidence            34679999999999999999999999876433322 256666666666677889999999998754321  122222333


Q ss_pred             HH-HhhcccccEEEEEEeCCCCCCCcHHHHHHHH-HHhcccCCCCCcEEEEEeCCCCCCChhHH------HHHHHHHhcC
Q 020714          215 SA-WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI-ERMGKQAPPKQKRVLCMNKVDLVTKKKDL------LKVAEQFKHL  286 (322)
Q Consensus       215 ~~-~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l-~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~------~~~~~~~~~~  286 (322)
                      +. ...+..+|++|+|+|+++ .+..+.....++ ..++..  ...|+++|+||+|+.......      ......+.+.
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            33 334578899999999964 344443333333 333221  124799999999987643211      0122233333


Q ss_pred             CCCCcEEEeecCCC-----CCHHHHHHHHHHHhhhcC
Q 020714          287 PGYERIFMTSGLKG-----AGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       287 ~~~~~~~~iSa~~g-----~gi~el~~~i~~~l~~~~  318 (322)
                      .+. .++.++...+     .|+.+|++.|.+.+.+++
T Consensus       181 ~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~  216 (239)
T 3lxx_A          181 FGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRENK  216 (239)
T ss_dssp             HSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence            333 4777776644     799999999999887654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.79  E-value=4.9e-20  Score=162.64  Aligned_cols=140  Identities=22%  Similarity=0.332  Sum_probs=97.5

Q ss_pred             hHHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C--------------CCCCCCCCCChhhHHHHHHhhCCeEE
Q 020714           24 PLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D--------------PQNNNAAKKQEPTWDEKYRERTDRIV   88 (322)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~--------------~k~dl~~~~~~~~w~~~~~~~~~~i~   88 (322)
                      +||.|||.++..+...  ..+.+|+++++.|||.|..+ +              ||+||++++..+.|..+|.+.+..+ 
T Consensus         2 ~w~PGhm~ka~~~~~~--~l~~~D~vl~VvDar~P~~~~~~~l~ll~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-   78 (262)
T 3cnl_A            2 SWYPGHIEKAKRQIKD--LLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-   78 (262)
T ss_dssp             -------CCTTHHHHH--HHTTCSEEEEEEETTSTTTTSCTTSCCTTSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-
T ss_pred             CCCchHHHHHHHHHHH--HHhhCCEEEEEeeCCCCCcCcChHHHhcCCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-
Confidence            6999999999887766  66689999999999999887 4              6889998888889999998887777 


Q ss_pred             Eeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCc-eEEEEEcCCCCchhHHHHHHhCCeeee
Q 020714           89 FGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS-VAVGIIGAPNAGKSSIINYMVGTKVAA  166 (322)
Q Consensus        89 f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~v~v~G~~~vGKStlin~l~~~~~~~  166 (322)
                      +.++ ++.|...+.+                 .               .... ++++++|.||||||||+|+|.+.....
T Consensus        79 ~iSa~~~~gi~~L~~-----------------~---------------l~~~~~~v~~vG~~~vGKSslin~l~~~~~~~  126 (262)
T 3cnl_A           79 ITTHKGEPRKVLLKK-----------------L---------------SFDRLARVLIVGVPNTGKSTIINKLKGKRASS  126 (262)
T ss_dssp             EECCTTSCHHHHHHH-----------------H---------------CCCTTCEEEEEESTTSSHHHHHHHHHTTCC--
T ss_pred             EEECCCCcCHHHHHH-----------------H---------------HHHhhhheEEeCCCCCCHHHHHHHHhcccccc
Confidence            7777 7777665510                 0               0111 689999999999999999999988878


Q ss_pred             ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714          167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       167 ~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~  201 (322)
                      ++..+|+|+.....   ..+..+.+|||||+..+.
T Consensus       127 ~~~~~g~T~~~~~~---~~~~~~~l~DtpG~~~~~  158 (262)
T 3cnl_A          127 VGAQPGITKGIQWF---SLENGVKILDTPGILYKN  158 (262)
T ss_dssp             --------CCSCEE---ECTTSCEEESSCEECCCC
T ss_pred             cCCCCCCccceEEE---EeCCCEEEEECCCcccCc
Confidence            88889988876532   234678999999998653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.79  E-value=5.2e-19  Score=158.82  Aligned_cols=172  Identities=22%  Similarity=0.276  Sum_probs=102.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeee-----eecCCCC----------------------ceeee------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKTN----------------------TTTHE------------  177 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~-----~~~~~~~----------------------~t~~~------------  177 (322)
                      ...++|+++|.+|||||||+|+|++..+.     .+...|+                      +|.+.            
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            35679999999999999999999998764     2222332                      22210            


Q ss_pred             ------------EEEEEeeCCccEEEEeCCCcccCCC-CCChhhHHHHHHHHHhhcccccEEE-EEEeCCCCCCCcHHHH
Q 020714          178 ------------VLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLM-VVFDVHRHLTSPDSRV  243 (322)
Q Consensus       178 ------------~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~ad~ii-~v~D~s~~~~~~~~~~  243 (322)
                                  ...........+.||||||+..... ..+..........+...+..++.++ +|+|++......+  .
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~--~  181 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--A  181 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--H
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH--H
Confidence                        0001111246899999999975321 0111111111122233455666555 7999976544433  2


Q ss_pred             HHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH-HhcC-CCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714          244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-FKHL-PGYERIFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       244 ~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~-~~~~-~~~~~~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      ..++..+...   +.|+++|+||+|+............. +... .+..+++++||++|.|+++++++|.+.
T Consensus       182 ~~~~~~~~~~---~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          182 LKIAKEVDPQ---GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHHHCTT---CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHhCCC---CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            3445555432   56899999999998654322222211 1111 123468899999999999999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.79  E-value=1e-18  Score=147.70  Aligned_cols=163  Identities=18%  Similarity=0.184  Sum_probs=106.1

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..++|+++|++|||||||+++|.+..+..... +..+.+...+.+...+  ..+.+|||||...+....           
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~-----------   71 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT-----------   71 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC-----------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh-----------
Confidence            35899999999999999999999876543221 2222222233333444  356789999987653211           


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                       ...+..++++++|+|+....+.  ..+..|+..+........|+++|+||+|+.............+....+. .++++
T Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~~d~  147 (199)
T 2f9l_A           72 -SAYYRGAVGALLVYDIAKHLTY--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL-SFIET  147 (199)
T ss_dssp             -HHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred             -HHHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-eEEEE
Confidence             1223567999999999654322  2233444444332233578999999999975433222334444444454 58999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      ||+++.|+++++++|.+.+.+
T Consensus       148 Sal~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          148 SALDSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999988765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.77  E-value=1.2e-18  Score=163.38  Aligned_cols=164  Identities=19%  Similarity=0.260  Sum_probs=103.2

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCcee--------------eeEE-----EEEeeCCccEEEEeCCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT--------------HEVL-----GVMTKADTQICIFDTPG  196 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~--------------~~~~-----~~~~~~~~~~~l~DtpG  196 (322)
                      ....++|+++|.+|+|||||+|+|++............+.              ....     .........+.+|||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            4567899999999999999999998743221000000000              0000     00000115789999999


Q ss_pred             cccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH
Q 020714          197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD  275 (322)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~  275 (322)
                      +..+            ...+...+..+|++++|+|++++..... ......+..++.     .|+++|+||+|+......
T Consensus        85 h~~~------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-----~~iivviNK~Dl~~~~~~  147 (403)
T 3sjy_A           85 HEVL------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-----KNLIIVQNKVDVVSKEEA  147 (403)
T ss_dssp             CGGG------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-----CCEEEEEECGGGSCHHHH
T ss_pred             cHHH------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-----CCEEEEEECccccchHHH
Confidence            7643            2344456688999999999987653332 233344444432     469999999999875321


Q ss_pred             ---HHHHHHHHhcCC-CCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          276 ---LLKVAEQFKHLP-GYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       276 ---~~~~~~~~~~~~-~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                         .++....+.... ...+++++||++|.|+++|+++|.+.+..
T Consensus       148 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          148 LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence               112222222211 13369999999999999999999987754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.77  E-value=9.3e-19  Score=157.68  Aligned_cols=162  Identities=15%  Similarity=0.173  Sum_probs=106.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      ||+++|.+|||||||++++.+..........+.|.......+ .....+.+|||||+..+....        + .....+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~--------l-~~~~yy   70 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPS--------Y-DSERLF   70 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCS--------H-HHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchh--------h-hhhhhc
Confidence            588999999999999999877644322111222222111112 235789999999999774210        0 011346


Q ss_pred             ccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-------hHHHHHHHHHhcC----CC
Q 020714          221 NLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-------KDLLKVAEQFKHL----PG  288 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-------~~~~~~~~~~~~~----~~  288 (322)
                      +.++++|+|||+++. .... ..+..++..+... .++.|+++|+||+|+....       .+..+..+.+++.    .+
T Consensus        71 r~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~  148 (331)
T 3r7w_B           71 KSVGALVYVIDSQDE-YINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQ  148 (331)
T ss_dssp             TTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCC
T ss_pred             cCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccC
Confidence            889999999999876 2222 2344445544322 3478999999999998753       2334445566664    33


Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          289 YERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       289 ~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      . +++++||++ .+|.+.|..|.+.+.+
T Consensus       149 i-~f~eTSAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          149 V-SFYLTSIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             E-EEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred             c-eEEEeccCC-CcHHHHHHHHHHHHHh
Confidence            3 689999998 5999999999887765

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.77  E-value=5.8e-18  Score=160.14  Aligned_cols=154  Identities=21%  Similarity=0.220  Sum_probs=102.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeee------------------------------eecCCCCceeeeEEEEEeeCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA------------------------------AVSRKTNTTTHEVLGVMTKAD  186 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~  186 (322)
                      ...++|+++|.+|+|||||+|+|++....                              ......|.|.+.....+...+
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            45789999999999999999999643110                              111224677776666666677


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCC-------cHHHHHHHHHHhcccCCCCCc
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS-------PDSRVIRLIERMGKQAPPKQK  259 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~-------~~~~~~~~l~~~~~~~~~~~p  259 (322)
                      ..+.||||||+..+            ...+...+..+|++|+|+|++.+..+       +.......+..+      +.|
T Consensus        95 ~~~~iiDTPGh~~f------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~------~v~  156 (439)
T 3j2k_7           95 KHFTILDAPGHKSF------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA------GVK  156 (439)
T ss_pred             eEEEEEECCChHHH------------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc------CCC
Confidence            89999999998643            33444567789999999999876431       222333333332      344


Q ss_pred             -EEEEEeCCCCCCCh---hH---HHHHHHHHhcCCCC-----CcEEEeecCCCCCHHHHHH
Q 020714          260 -RVLCMNKVDLVTKK---KD---LLKVAEQFKHLPGY-----ERIFMTSGLKGAGLKALTQ  308 (322)
Q Consensus       260 -~ivV~NK~Dl~~~~---~~---~~~~~~~~~~~~~~-----~~~~~iSa~~g~gi~el~~  308 (322)
                       +++|+||+|+....   ..   .......+....++     .+++++||++|+|++++.+
T Consensus       157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          157 HLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             eEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence             89999999996421   11   12222223222232     3699999999999999654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.76  E-value=1.9e-17  Score=140.69  Aligned_cols=172  Identities=23%  Similarity=0.262  Sum_probs=102.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCC-ChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY-SHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~  213 (322)
                      ...+.+|+++|++|||||||+|+|.+.. ...+.+.+|++.....  +...+ .+.+|||||+....... ........+
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            3467899999999999999999999876 3445566676654322  22223 78999999986422111 011112223


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH---HHHHHHHHhcCCCCC
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFKHLPGYE  290 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~  290 (322)
                      ...+.....++.+++++|++.+.+..+..+..++...      +.|+++|+||+|+......   .......+.+.....
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~------~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            3333444678999999999776544333444555432      3568999999998764321   122222233222233


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      .++++||+++.|+++++++|.+.+.+
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            57899999999999999999988754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.76  E-value=2.8e-18  Score=164.05  Aligned_cols=161  Identities=15%  Similarity=0.259  Sum_probs=104.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe----e--eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK----V--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK  210 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~----~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~  210 (322)
                      ...++|+++|.+|+|||||+|+|++..    .  .......|.|.+.....+...+..+.+|||||+..           
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~-----------   85 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-----------   85 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-----------
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-----------
Confidence            357899999999999999999999865    1  12233445555443333445678899999999753           


Q ss_pred             HHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHH-HHHhcC-
Q 020714          211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVA-EQFKHL-  286 (322)
Q Consensus       211 ~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~-~~~~~~-  286 (322)
                       ....+...+..+|++++|+|++++...+......++..+      +.|.++|+||+|+.....  ...+.. ..+... 
T Consensus        86 -~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~  158 (482)
T 1wb1_A           86 -LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTH  158 (482)
T ss_dssp             -HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             -HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhc
Confidence             234455667889999999999776444333333333332      356899999999986321  111222 222221 


Q ss_pred             -CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          287 -PGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       287 -~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                       +...+++++||++|+|+++|+++|.+.+.
T Consensus       159 ~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          159 NLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             SGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence             11347999999999999999999999764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.76  E-value=4e-18  Score=151.55  Aligned_cols=169  Identities=16%  Similarity=0.223  Sum_probs=89.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecC-------CCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCC-hh
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYS-HK  207 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~-~~  207 (322)
                      ..++|+++|.+|+|||||+|+|++........       .++++.......+...+.  .+.+|||||+........ ..
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            46899999999999999999998876543332       223333333333333343  789999999965432211 11


Q ss_pred             hH----HHHHHHHHhh----------cccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          208 DV----KVRVESAWSA----------VNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       208 ~~----~~~~~~~~~~----------~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      .+    ...+...+..          -..+|+++++++.+.+. ...+   ..+++.+..    .+|+++|+||+|+...
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d---~~~l~~l~~----~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD---IEFMKRLHE----KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH---HHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH---HHHHHHHhc----cCCEEEEEeccCCCCH
Confidence            11    1222333332          12367899999775532 2222   234444443    5789999999999764


Q ss_pred             hhHH---HHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          273 KKDL---LKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       273 ~~~~---~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .+..   ......+.. .+. +++++||++|+|+++++++|.+.+.
T Consensus       160 ~e~~~~~~~i~~~l~~-~~i-~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          160 EECQQFKKQIMKEIQE-HKI-KIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHHHHHHHHHHHHHH-TTC-CCCCC-----------CHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHH-cCC-eEEcCCCCCChhHHHHHHHHhcCCC
Confidence            3211   122222322 344 5899999999999999999988653

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.76  E-value=7.3e-19  Score=154.72  Aligned_cols=89  Identities=17%  Similarity=0.202  Sum_probs=61.9

Q ss_pred             cccEEEEEEeCCCC--CCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC-CCCCcEEEeec
Q 020714          222 LFEVLMVVFDVHRH--LTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL-PGYERIFMTSG  297 (322)
Q Consensus       222 ~ad~ii~v~D~s~~--~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~iSa  297 (322)
                      .+|++|+|||+++.  .+.  ..+..|+..+... ...+.|+++|+||+|+......  .....+... .+. ++++|||
T Consensus       162 ~ad~vilV~D~t~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~-~~~e~SA  236 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNF--DDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNL-QVVETSA  236 (255)
T ss_dssp             ECCEEEEEEECBC----CH--HHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSC-CEEECBT
T ss_pred             cCCEEEEEEECCCCchhhH--HHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCC-eEEEEEC
Confidence            68999999999775  333  3344555554322 1235789999999999654332  234444443 344 6999999


Q ss_pred             CCCCCHHHHHHHHHHHhh
Q 020714          298 LKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~  315 (322)
                      ++|.|++++|++|.+.+.
T Consensus       237 k~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          237 RSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhc
Confidence            999999999999998764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.76  E-value=6.6e-18  Score=141.90  Aligned_cols=162  Identities=21%  Similarity=0.238  Sum_probs=105.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|++|||||||++++.+........ +..+.+...+.+...+.  .+.+|||||+..+.....         
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~---------   96 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITS---------   96 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCC-CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCH---------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhH---------
Confidence            346899999999999999999999876543222 22222233333444554  456799999876533111         


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                         ..+..++++++|+|.....+.  ..+..|+..+........|+++|+||+|+.............+....+. .++.
T Consensus        97 ---~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~ld  170 (191)
T 1oix_A           97 ---AYYRGAVGALLVYDIAKHLTY--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL-SFIE  170 (191)
T ss_dssp             ---HHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred             ---HHhhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence               234567899999998653221  1233444444332233578999999999975332222334444444444 5899


Q ss_pred             eecCCCCCHHHHHHHHHHHh
Q 020714          295 TSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l  314 (322)
                      +||+++.|+++++++|.+.+
T Consensus       171 ~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          171 TSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998765

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.76  E-value=1.2e-17  Score=156.79  Aligned_cols=164  Identities=16%  Similarity=0.288  Sum_probs=106.1

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeee--eecCCCCceeeeEEEEEee------------------C-----CccEE
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVMTK------------------A-----DTQIC  190 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~--~~~~~~~~t~~~~~~~~~~------------------~-----~~~~~  190 (322)
                      ....++|+++|.+|+|||||+++|++....  ......|.|..........                  +     ...+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            345789999999999999999999865322  1122344454332211111                  0     15689


Q ss_pred             EEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCC-cHHHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q 020714          191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS-PDSRVIRLIERMGKQAPPKQKRVLCMNKVDL  269 (322)
Q Consensus       191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~-~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl  269 (322)
                      ||||||+..+            ...++..+..+|++|+|+|++++... +.......+..++     ..|+++|+||+|+
T Consensus        87 iiDtPGh~~f------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-----~~~iivviNK~Dl  149 (410)
T 1kk1_A           87 FIDAPGHEAL------------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-----QKNIIIAQNKIEL  149 (410)
T ss_dssp             EEECSSHHHH------------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGG
T ss_pred             EEECCChHHH------------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEECccC
Confidence            9999997532            33445567788999999999876422 2223333444433     2469999999999


Q ss_pred             CCChh---HHHHHHHHHhcC-CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          270 VTKKK---DLLKVAEQFKHL-PGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       270 ~~~~~---~~~~~~~~~~~~-~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      .....   ..++....+... ....+++++||++|.|+++|+++|.+.+..
T Consensus       150 ~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          150 VDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            87532   122222333221 123479999999999999999999987653

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.75  E-value=7.4e-18  Score=163.51  Aligned_cols=163  Identities=17%  Similarity=0.173  Sum_probs=99.3

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEE----EEe----eCCccEEEEeCCCcccCCCCCCh
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLG----VMT----KADTQICIFDTPGLMLNKSGYSH  206 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~----~~~----~~~~~~~l~DtpG~~~~~~~~~~  206 (322)
                      ....++|+++|.+|||||||+|++++..+.. ..++.+.+......    .+.    ..+..+.+|||||...+..... 
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~-  116 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ-  116 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH-
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH-
Confidence            4567999999999999999999999876431 11222222211100    000    1246799999999765543111 


Q ss_pred             hhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714          207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL  286 (322)
Q Consensus       207 ~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~  286 (322)
                                 ..+..+|++++|+|+++.  +   ....|+..+.... ++.|+++|+||+|+........+........
T Consensus       117 -----------~~l~~~d~ii~V~D~s~~--~---~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~  179 (535)
T 3dpu_A          117 -----------FFMTRSSVYMLLLDSRTD--S---NKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPA  179 (535)
T ss_dssp             -----------HHHHSSEEEEEEECGGGG--G---GHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG
T ss_pred             -----------HHccCCcEEEEEEeCCCc--h---hHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHh
Confidence                       124568999999999642  2   2334444444322 2578999999999986544333334444444


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      .+. +++++||++|.||++++++|.+.+...
T Consensus       180 ~~~-~~~~vSA~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          180 IEN-RFHRISCKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             GTT-CEEECCC-----CTTHHHHHHHHHTCT
T ss_pred             cCC-ceEEEecCcccCHHHHHHHHHHHHhcc
Confidence            454 599999999999999999999988764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.75  E-value=2.1e-17  Score=155.01  Aligned_cols=163  Identities=18%  Similarity=0.274  Sum_probs=98.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeee--ecCCCCceeeeEEEEEee---------------C--------CccEEE
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMTK---------------A--------DTQICI  191 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~--~~~~~~~t~~~~~~~~~~---------------~--------~~~~~l  191 (322)
                      ...++|+++|.+++|||||+++|++.....  .....|.|..........               .        ...+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            356899999999999999999998653221  122234444322111100               1        157899


Q ss_pred             EeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714          192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (322)
Q Consensus       192 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~  270 (322)
                      |||||+..+            ....+..+..+|++++|+|++++..... ......+..++     ..|+++|+||+|+.
T Consensus        86 iDtPGh~~f------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~-----~~~iivv~NK~Dl~  148 (408)
T 1s0u_A           86 VDSPGHETL------------MATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG-----IDKIIIVQNKIDLV  148 (408)
T ss_dssp             EECSSHHHH------------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT-----CCCEEEEEECTTSS
T ss_pred             EECCCHHHH------------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC-----CCeEEEEEEccCCC
Confidence            999997532            3345566788899999999987542222 22333333332     24699999999998


Q ss_pred             CChh---HHHHHHHHHhcC-CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          271 TKKK---DLLKVAEQFKHL-PGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       271 ~~~~---~~~~~~~~~~~~-~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ....   ..++....+... ....+++++||++|+|+++|+++|.+.+..
T Consensus       149 ~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          149 DEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             CTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            6532   233333333321 123479999999999999999999987754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.75  E-value=1.6e-19  Score=173.48  Aligned_cols=161  Identities=19%  Similarity=0.245  Sum_probs=107.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      +++++|+++|.+|+|||||+|+|.+..+... ..+++|.+.....+.. .+..+.||||||+..+.....          
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~----------   70 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA----------   70 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHS-SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB----------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH----------
Confidence            3578899999999999999999987665433 3455554433222222 456899999999876644221          


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHHHHHH---h-cCCCCC
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQF---K-HLPGYE  290 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~~---~-~~~~~~  290 (322)
                        ..+..+|++++|+|++++...+..   ..+..+...   +.|+++|+||+|+..... .........   . ...+..
T Consensus        71 --~~~~~aD~vILVVDa~dg~~~qt~---e~l~~~~~~---~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~  142 (537)
T 3izy_P           71 --RGTQVTDIVILVVAADDGVMKQTV---ESIQHAKDA---HVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDV  142 (537)
T ss_dssp             --SSSBSBSSCEEECBSSSCCCHHHH---HHHHHHHTT---TCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSE
T ss_pred             --HHHccCCEEEEEEECCCCccHHHH---HHHHHHHHc---CCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCc
Confidence              346778999999999875544333   333333332   467999999999975321 111111111   1 111234


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      +++++||++|.|+++|+++|...+..
T Consensus       143 ~iv~vSAktG~GI~eLle~I~~l~~~  168 (537)
T 3izy_P          143 QAVHVSALTGENMMALAEATIALAEM  168 (537)
T ss_dssp             EECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCchhHHHHHHHhhhc
Confidence            78999999999999999999988653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.75  E-value=2.6e-18  Score=165.59  Aligned_cols=117  Identities=15%  Similarity=0.263  Sum_probs=80.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe------------------ee---eecCCCCceeeeEEEEEeeCCccEEEEeCCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK------------------VA---AVSRKTNTTTHEVLGVMTKADTQICIFDTPG  196 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~------------------~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG  196 (322)
                      +..+|+|+|.+|+|||||+|+|+...                  ..   ......|.|.......+...+..+.||||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            46789999999999999999996210                  00   0111234455444455666788999999999


Q ss_pred             cccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      +..+..            .+...+..+|++|+|+|++.+...+...+...+   ...   +.|+++|+||+|+...
T Consensus        92 ~~df~~------------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~---~~~---~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           92 HADFTE------------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVC---RLR---HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             STTCCH------------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHH---HTT---TCCEEEEEECTTSCCS
T ss_pred             chhHHH------------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH---HHc---CCCEEEEEeCCCCccc
Confidence            976532            244567889999999999876554443333333   222   4679999999999754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.75  E-value=4.6e-18  Score=162.91  Aligned_cols=153  Identities=17%  Similarity=0.218  Sum_probs=97.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCe------------------------------eeeecCCCCceeeeEEEEEeeC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK------------------------------VAAVSRKTNTTTHEVLGVMTKA  185 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~------------------------------~~~~~~~~~~t~~~~~~~~~~~  185 (322)
                      ....++|+++|.+|+|||||+|+|++..                              ........|.|.+.....+...
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            3467999999999999999999997531                              0111223466766666556667


Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCC-------cHHHHHHHHHHhcccCCCCC
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS-------PDSRVIRLIERMGKQAPPKQ  258 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~-------~~~~~~~~l~~~~~~~~~~~  258 (322)
                      +..+.||||||+..+            ...+...+..+|++|+|+|++.+..+       +.......+..++     ..
T Consensus       110 ~~~~~iiDTPG~~~f------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-----~~  172 (483)
T 3p26_A          110 RANFTIVDAPGHRDF------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IH  172 (483)
T ss_dssp             SCEEEEECCCCCGGG------------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-----CC
T ss_pred             CceEEEEECCCcHHH------------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-----CC
Confidence            889999999999753            33444567889999999999775322       1222223333322     23


Q ss_pred             cEEEEEeCCCCCCChh-HHHH---HHHHHhcCCC----CCcEEEeecCCCCCHHH
Q 020714          259 KRVLCMNKVDLVTKKK-DLLK---VAEQFKHLPG----YERIFMTSGLKGAGLKA  305 (322)
Q Consensus       259 p~ivV~NK~Dl~~~~~-~~~~---~~~~~~~~~~----~~~~~~iSa~~g~gi~e  305 (322)
                      |+|+|+||+|+..... ..++   ....+....+    ..+++++||++|+|+++
T Consensus       173 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          173 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             CEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             cEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            5999999999986422 2222   2222211111    23689999999999985

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.74  E-value=5e-18  Score=159.21  Aligned_cols=161  Identities=18%  Similarity=0.165  Sum_probs=107.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC--------eeeee--------cCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT--------KVAAV--------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~--------~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      ...++|+++|.+|+|||||+|+|++.        .+...        ....|.|.+.....+...+..+.||||||+..+
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            45789999999999999999999863        11000        012355655544445556788999999998753


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHH---
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL---  276 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~---  276 (322)
                                  ...+...+..+|++|+|+|++++...+.......+...      +.| +++|+||+|+.......   
T Consensus        89 ------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~------~ip~iivviNK~Dl~~~~~~~~~~  150 (405)
T 2c78_A           89 ------------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV------GVPYIVVFMNKVDMVDDPELLDLV  150 (405)
T ss_dssp             ------------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHH
T ss_pred             ------------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCEEEEEEECccccCcHHHHHHH
Confidence                        23344556789999999999876544333333333332      356 88999999998533222   


Q ss_pred             HHHHHHHhcCCC----CCcEEEeecCCCCC------------------HHHHHHHHHHHhh
Q 020714          277 LKVAEQFKHLPG----YERIFMTSGLKGAG------------------LKALTQYLMEQFK  315 (322)
Q Consensus       277 ~~~~~~~~~~~~----~~~~~~iSa~~g~g------------------i~el~~~i~~~l~  315 (322)
                      ......+....+    ..+++++||++|.|                  +++|+++|.+.+.
T Consensus       151 ~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          151 EMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            222233332233    24799999999987                  8899999888765

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.74  E-value=6.2e-17  Score=161.08  Aligned_cols=167  Identities=21%  Similarity=0.265  Sum_probs=109.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEE---------EEEe------------------eCC--
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL---------GVMT------------------KAD--  186 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~---------~~~~------------------~~~--  186 (322)
                      ....++|+|+|.+|+|||||+|+|++..+..++..++|......         ....                  ..+  
T Consensus        66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~  145 (695)
T 2j69_A           66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE  145 (695)
T ss_dssp             HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence            45789999999999999999999999887777766665211000         0000                  000  


Q ss_pred             ----------------------------ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCC
Q 020714          187 ----------------------------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS  238 (322)
Q Consensus       187 ----------------------------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~  238 (322)
                                                  ..+.||||||+.....         ....+...+..+|++++|+|++.+.+.
T Consensus       146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~---------~~~~~~~~i~~aD~vL~Vvda~~~~s~  216 (695)
T 2j69_A          146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA---------RNELSLGYVNNCHAILFVMRASQPCTL  216 (695)
T ss_dssp             HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT---------CHHHHTHHHHSSSEEEEEEETTSTTCH
T ss_pred             HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh---------HHHHHHHHHHhCCEEEEEEeCCCccch
Confidence                                        4799999999874211         123445567889999999999776554


Q ss_pred             cHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh----h---HHH----HH----HHHHhcCC-------CCCcEEEee
Q 020714          239 PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----K---DLL----KV----AEQFKHLP-------GYERIFMTS  296 (322)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~----~---~~~----~~----~~~~~~~~-------~~~~~~~iS  296 (322)
                      .+..  .+...+...   +.|+++|+||+|+....    .   ...    ..    ...+....       ...++++||
T Consensus       217 ~e~~--~l~~~l~~~---~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vS  291 (695)
T 2j69_A          217 GERR--YLENYIKGR---GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELS  291 (695)
T ss_dssp             HHHH--HHHHHTTTS---CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECC
T ss_pred             hHHH--HHHHHHHhh---CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEe
Confidence            3322  222333322   45799999999986542    1   111    11    11222211       123699999


Q ss_pred             cC--------------CCCCHHHHHHHHHHHhhh
Q 020714          297 GL--------------KGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~--------------~g~gi~el~~~i~~~l~~  316 (322)
                      |+              +|.|+++++++|.+.+..
T Consensus       292 Ak~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          292 SIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             ChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence            99              999999999999988754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.74  E-value=1.4e-17  Score=155.80  Aligned_cols=161  Identities=16%  Similarity=0.144  Sum_probs=106.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCee-------e--------eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKV-------A--------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS  202 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~-------~--------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~  202 (322)
                      ..++|+++|.+|+|||||+++|++...       .        ......|.|.+.....+...+..+.||||||+..+  
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f--   79 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY--   79 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH--
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH--
Confidence            357999999999999999999986310       0        01113455555444444456788999999998632  


Q ss_pred             CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhH---HHH
Q 020714          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKD---LLK  278 (322)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~---~~~  278 (322)
                                ...+...+..+|++|+|+|++++...+.......+...      +.| +++|+||+|+......   ...
T Consensus        80 ----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~------~vp~iivviNK~Dl~~~~~~~~~~~~  143 (397)
T 1d2e_A           80 ----------VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI------GVEHVVVYVNKADAVQDSEMVELVEL  143 (397)
T ss_dssp             ----------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT------TCCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred             ----------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCeEEEEEECcccCCCHHHHHHHHH
Confidence                      23445567899999999999876543333333333332      356 6899999999853322   122


Q ss_pred             HHHHHhcCCC----CCcEEEeecCCCCC----------HHHHHHHHHHHhhh
Q 020714          279 VAEQFKHLPG----YERIFMTSGLKGAG----------LKALTQYLMEQFKD  316 (322)
Q Consensus       279 ~~~~~~~~~~----~~~~~~iSa~~g~g----------i~el~~~i~~~l~~  316 (322)
                      ....+....+    ..+++++||++|.|          +++|+++|.+.+..
T Consensus       144 ~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          144 EIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             HHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence            2233333233    24799999999875          89999999987753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.74  E-value=9.5e-18  Score=151.82  Aligned_cols=176  Identities=16%  Similarity=0.231  Sum_probs=100.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCee-----eeecCCCC---ceeee-------------------------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRKTN---TTTHE-------------------------------  177 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~-----~~~~~~~~---~t~~~-------------------------------  177 (322)
                      ...++|+|+|.+|||||||+|+|++..+     ..+...++   +++..                               
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            3567899999999999999999999875     22222331   11110                               


Q ss_pred             --------------------EEEEEeeCCccEEEEeCCCcccCCC-CCChhhHHHHHHHHHhhcccccEEEEEEeCC-CC
Q 020714          178 --------------------VLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVH-RH  235 (322)
Q Consensus       178 --------------------~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s-~~  235 (322)
                                          ...+....+..+.||||||+..... ..+..........+...+..+|++++|+|.+ .+
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                                0001222456899999999964211 1111112223444556678899999999973 33


Q ss_pred             CCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC--CCCCcEEEeecCC---CCCHHHHHHHH
Q 020714          236 LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTSGLK---GAGLKALTQYL  310 (322)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~iSa~~---g~gi~el~~~i  310 (322)
                      ....+.  ..++..+...   +.|+++|+||+|+........+........  .++.+++.+|+.+   |.|++++++.+
T Consensus       182 ~~~~~~--~~i~~~~~~~---~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~  256 (315)
T 1jwy_B          182 LANSDA--LQLAKEVDPE---GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE  256 (315)
T ss_dssp             STTCSH--HHHHHHHCSS---CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred             hhhhHH--HHHHHHhCCC---CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence            332321  1333333332   568999999999986543222222210011  1222344455555   89999999999


Q ss_pred             HHHhhhc
Q 020714          311 MEQFKDL  317 (322)
Q Consensus       311 ~~~l~~~  317 (322)
                      .+.+...
T Consensus       257 ~~~~~~~  263 (315)
T 1jwy_B          257 ILYFKNH  263 (315)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhCC
Confidence            9888653

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.74  E-value=2.8e-17  Score=152.01  Aligned_cols=146  Identities=14%  Similarity=0.148  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|.+|+|||||+++|+         ..+.|.+.....+...+..+.||||||+..+            ...+...+
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f------------~~~~~~~~   81 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT------------LKSLITAL   81 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTC------------HHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHH------------HHHHHHHH
Confidence            89999999999999999998         2233444444445556778999999998754            22334456


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcE-EEEEe-CCCCCCChhH--HHHHHHHHhcCCC--CCcEEE
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-VLCMN-KVDLVTKKKD--LLKVAEQFKHLPG--YERIFM  294 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~-ivV~N-K~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~  294 (322)
                      ..+|++++|+| ..+...+.......+..+      +.|. ++|+| |+|+ .....  ..+....+....+  ..++++
T Consensus        82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~~------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~  153 (370)
T 2elf_A           82 NISDIAVLCIP-PQGLDAHTGECIIALDLL------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECIS  153 (370)
T ss_dssp             HTCSEEEEEEC-TTCCCHHHHHHHHHHHHT------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEE
T ss_pred             HHCCEEEEEEc-CCCCcHHHHHHHHHHHHc------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence            78899999999 655433333333333333      2456 89999 9999 43211  1123333333322  247999


Q ss_pred             --eecCC---CCCHHHHHHHHHHHhh
Q 020714          295 --TSGLK---GAGLKALTQYLMEQFK  315 (322)
Q Consensus       295 --iSa~~---g~gi~el~~~i~~~l~  315 (322)
                        +||++   |.|+++|+++|.+.+.
T Consensus       154 ~~~SA~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          154 LNTNKSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             CCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred             cccccccCcCCCCHHHHHHHHHhhcc
Confidence              99999   9999999999998765

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.73  E-value=2.9e-17  Score=155.35  Aligned_cols=153  Identities=18%  Similarity=0.199  Sum_probs=97.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeee----------eecCC----------------------CCceeeeEEEEEee
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA----------AVSRK----------------------TNTTTHEVLGVMTK  184 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~----------~~~~~----------------------~~~t~~~~~~~~~~  184 (322)
                      ...++|+++|.+|+|||||+|+|++....          ..+..                      .|.|.+.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            45689999999999999999999754210          01111                      23344433334445


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      .+..+.||||||+..+.            ......+..+|++|+|+|++++...+.......+..++     ..|+++|+
T Consensus       102 ~~~~~~iiDtpGh~~f~------------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~-----~~~iIvvi  164 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYT------------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLG-----IKHIVVAI  164 (434)
T ss_dssp             SSEEEEEEECCCSGGGH------------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTT-----CCEEEEEE
T ss_pred             CCceEEEEECCChHHHH------------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCeEEEEE
Confidence            67789999999987531            22234568899999999998765433333333333332     23599999


Q ss_pred             eCCCCCCCh-hH---HHHHHHHHhcCCC----CCcEEEeecCCCCCHHHH
Q 020714          265 NKVDLVTKK-KD---LLKVAEQFKHLPG----YERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       265 NK~Dl~~~~-~~---~~~~~~~~~~~~~----~~~~~~iSa~~g~gi~el  306 (322)
                      ||+|+.... ..   .......+....+    ..+++++||++|.|++++
T Consensus       165 NK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          165 NKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             ECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             EcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            999998632 21   2223334434444    146899999999999983

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.3e-17  Score=163.51  Aligned_cols=154  Identities=18%  Similarity=0.232  Sum_probs=101.2

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeec------------------------------CCCCceeeeEEEEEeeC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS------------------------------RKTNTTTHEVLGVMTKA  185 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~  185 (322)
                      ....++|+++|.+|+|||||+|+|++.......                              ...|+|.+.....+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            355789999999999999999999865321111                              02466766555556667


Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC-------CCCcHHHHHHHHHHhcccCCCCC
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQ  258 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~-------~~~~~~~~~~~l~~~~~~~~~~~  258 (322)
                      +..+.||||||+..+            ...+...+..+|++|+|+|++.+       ...+.......+..++     ..
T Consensus       244 ~~~~~iiDTPG~e~f------------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg-----i~  306 (611)
T 3izq_1          244 RANFTIVDAPGHRDF------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IH  306 (611)
T ss_dssp             SCEEEEEECCSSSCH------------HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT-----CC
T ss_pred             CceEEEEECCCCccc------------HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC-----CC
Confidence            889999999998642            45566778999999999999653       1122222222222222     23


Q ss_pred             cEEEEEeCCCCCCChh-HHH---HHHHHHhcCCC----CCcEEEeecCCCCCHHHH
Q 020714          259 KRVLCMNKVDLVTKKK-DLL---KVAEQFKHLPG----YERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       259 p~ivV~NK~Dl~~~~~-~~~---~~~~~~~~~~~----~~~~~~iSa~~g~gi~el  306 (322)
                      |+|+|+||+|+..... ...   .....+....+    ..++++|||++|.|++++
T Consensus       307 ~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          307 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             EEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             eEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            5999999999986322 111   12222221112    237999999999999876

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.72  E-value=5.1e-17  Score=158.08  Aligned_cols=159  Identities=16%  Similarity=0.240  Sum_probs=99.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe--ee------e------ecCCCCceeeeEEEEEee---C--CccEEEEeCCCcc
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK--VA------A------VSRKTNTTTHEVLGVMTK---A--DTQICIFDTPGLM  198 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~--~~------~------~~~~~~~t~~~~~~~~~~---~--~~~~~l~DtpG~~  198 (322)
                      +..+|+++|.+|+|||||+++|+...  +.      .      .....|.|.......+..   +  ...+.||||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            46789999999999999999997521  10      0      011123333221111211   2  2567899999998


Q ss_pred             cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHH
Q 020714          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK  278 (322)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~  278 (322)
                      .+..            .....+..+|++++|+|++++...+..........      .+.|+++|+||+|+....  ...
T Consensus        85 dF~~------------ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~--~~~  144 (600)
T 2ywe_A           85 DFSY------------EVSRALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSAD--VDR  144 (600)
T ss_dssp             GGHH------------HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHH
T ss_pred             hHHH------------HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccC--HHH
Confidence            6421            12233567899999999987654433322222221      256799999999997643  333


Q ss_pred             HHHHHhcCCCCC--cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          279 VAEQFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       279 ~~~~~~~~~~~~--~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ....+.+..+..  +++++||++|.|+++++++|.+.+..
T Consensus       145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            445555555543  58999999999999999999998864

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.72  E-value=1.2e-17  Score=153.85  Aligned_cols=171  Identities=22%  Similarity=0.313  Sum_probs=100.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeee-----eecCCCC----------------------ceee-------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKTN----------------------TTTH-------------  176 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~-----~~~~~~~----------------------~t~~-------------  176 (322)
                      ...++|+|+|.+|||||||+|+|++..+.     .+...|+                      +|++             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            34679999999999999999999998764     2222232                      1111             


Q ss_pred             ----------e-EEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH-hhc-ccccEEEEEEeCCCCCCCcHHHH
Q 020714          177 ----------E-VLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW-SAV-NLFEVLMVVFDVHRHLTSPDSRV  243 (322)
Q Consensus       177 ----------~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~-~~~-~~ad~ii~v~D~s~~~~~~~~~~  243 (322)
                                . ........+..+.||||||+...............+.... .++ ...+++++|+|++......+  .
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--~  186 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--A  186 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH--H
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH--H
Confidence                      0 0111112256899999999975322111122212222222 222 44567777778755333332  3


Q ss_pred             HHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH--HhcCCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714          244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ--FKHLPGYERIFMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       244 ~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~iSa~~g~gi~el~~~i~~  312 (322)
                      ..+++.+...   +.|+++|+||+|+.............  +....+..+++++||++|.|++++++++.+
T Consensus       187 ~~i~~~~~~~---~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          187 LKVAKEVDPQ---GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHCTT---CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHhCcC---CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3455555433   57899999999998653322221111  011123346789999999999999999876

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.71  E-value=5.7e-17  Score=158.04  Aligned_cols=159  Identities=18%  Similarity=0.204  Sum_probs=96.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe--ee------e------ecCCCCceeeeEEEEEee---C--CccEEEEeCCCcc
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK--VA------A------VSRKTNTTTHEVLGVMTK---A--DTQICIFDTPGLM  198 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~--~~------~------~~~~~~~t~~~~~~~~~~---~--~~~~~l~DtpG~~  198 (322)
                      +..+|+++|.+|+|||||+++|+...  ..      .      .....|.|.......+.+   +  +..+.||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45789999999999999999997521  10      0      011223443322222222   1  3578899999997


Q ss_pred             cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHH
Q 020714          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK  278 (322)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~  278 (322)
                      .+.            ......+..+|++++|+|++++...+..........      .+.|+++|+||+|+....  ...
T Consensus        83 dF~------------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~--~~~  142 (599)
T 3cb4_D           83 DFS------------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPAAD--PER  142 (599)
T ss_dssp             GGH------------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHH
T ss_pred             HHH------------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCccccc--HHH
Confidence            542            112234567899999999988766554433222222      146899999999998653  222


Q ss_pred             HHHHHhcCCCC--CcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          279 VAEQFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       279 ~~~~~~~~~~~--~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ....+.+..+.  .+++++||++|.|+++++++|.+.+..
T Consensus       143 v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          143 VAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             HHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            23333333333  258999999999999999999998764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.70  E-value=3.4e-17  Score=150.37  Aligned_cols=154  Identities=15%  Similarity=0.217  Sum_probs=90.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCce------------------------------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT------------------------------------  174 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t------------------------------------  174 (322)
                      .....|+|+|+||||||||+|+|++      .++......+++.                                    
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~  151 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV  151 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence            4478999999999999999999985      2333333222211                                    


Q ss_pred             -eeeEEEE--EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc
Q 020714          175 -THEVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG  251 (322)
Q Consensus       175 -~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~  251 (322)
                       ++.....  +...+..+.|+||||+...      .         ......+|++++|+|++.+...  ..+..   .+ 
T Consensus       152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~------~---------~~l~~~~d~vl~V~d~~~~~~~--~~i~~---~i-  210 (349)
T 2www_A          152 TRTTNEAILLCEGAGYDIILIETVGVGQS------E---------FAVADMVDMFVLLLPPAGGDEL--QGIKR---GI-  210 (349)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEEECCCC--C------H---------HHHHTTCSEEEEEECCC------------------
T ss_pred             hHHHHHHHHhhccCCCCEEEEECCCcchh------h---------hhHHhhCCEEEEEEcCCcchhH--HHhHH---HH-
Confidence             1000000  0125678899999997532      1         1124578999999999653211  11111   11 


Q ss_pred             ccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcC-----CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          252 KQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       252 ~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~-----~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                          -..|.++|+||+|+.....   ........+...     .+.++++++||++|.|+++|+++|.+.+.
T Consensus       211 ----l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          211 ----IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             ----CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ----HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence                1346899999999964321   111122222211     12357899999999999999999998764

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.70  E-value=5.7e-17  Score=153.30  Aligned_cols=152  Identities=17%  Similarity=0.260  Sum_probs=93.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC--eeee----------------------------ecCCCCceeeeEEEEEeeCCc
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT--KVAA----------------------------VSRKTNTTTHEVLGVMTKADT  187 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~--~~~~----------------------------~~~~~~~t~~~~~~~~~~~~~  187 (322)
                      ..++|+++|.+|+|||||+++|+..  .+..                            .....|.|.+.....+...+.
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            5689999999999999999999753  1110                            011345565554444556678


Q ss_pred             cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC-------CCCcHHHHHHHHHHhcccCCCCCcE
Q 020714          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQKR  260 (322)
Q Consensus       188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~-------~~~~~~~~~~~l~~~~~~~~~~~p~  260 (322)
                      .+.||||||+..+            ...+...+..+|++|+|+|++++       ...+.......+..++     ..++
T Consensus        85 ~~~iiDtpG~~~f------------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~-----~~~i  147 (435)
T 1jny_A           85 FFTIIDAPGHRDF------------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG-----LDQL  147 (435)
T ss_dssp             EEEECCCSSSTTH------------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT-----CTTC
T ss_pred             EEEEEECCCcHHH------------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcC-----CCeE
Confidence            8999999998753            22344567899999999999774       2222223333333332     1358


Q ss_pred             EEEEeCCCCCCC---hh---HHHHHHHHHhcCCC----CCcEEEeecCCCCCHHHH
Q 020714          261 VLCMNKVDLVTK---KK---DLLKVAEQFKHLPG----YERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       261 ivV~NK~Dl~~~---~~---~~~~~~~~~~~~~~----~~~~~~iSa~~g~gi~el  306 (322)
                      ++|+||+|+...   ..   ...+....+....+    ..+++++||++|+|+.++
T Consensus       148 ivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          148 IVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             EEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred             EEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence            999999999863   11   12222333333233    246999999999999854

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.70  E-value=3.8e-18  Score=166.75  Aligned_cols=162  Identities=18%  Similarity=0.237  Sum_probs=87.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeee------------------------------ecCCCCceeeeEEEEEeeCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA------------------------------VSRKTNTTTHEVLGVMTKAD  186 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~  186 (322)
                      ...++|+++|.+|+|||||+|+|++.....                              ....+|+|.+.....+...+
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            456899999999999999999996421100                              11134666666555555567


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-------CCcHHHHHHHHHHhcccCCCCCc
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQK  259 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-------~~~~~~~~~~l~~~~~~~~~~~p  259 (322)
                      ..+.||||||+..+...            +...+..+|++|+|+|++.+.       ..+.......+..++.     .+
T Consensus       255 ~~i~iiDTPGh~~f~~~------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgi-----p~  317 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISG------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGI-----SE  317 (592)
T ss_dssp             ----CCEEESSSEEEEE------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSC-----CC
T ss_pred             eEEEEEECCChHHHHHH------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCC-----Ce
Confidence            88999999999865432            223456789999999997643       3333344444444331     13


Q ss_pred             EEEEEeCCCCCCC-hhHHH---HHHHHHh-cCCCCC----cEEEeecCCCCCHH--------------HHHHHHHHHhh
Q 020714          260 RVLCMNKVDLVTK-KKDLL---KVAEQFK-HLPGYE----RIFMTSGLKGAGLK--------------ALTQYLMEQFK  315 (322)
Q Consensus       260 ~ivV~NK~Dl~~~-~~~~~---~~~~~~~-~~~~~~----~~~~iSa~~g~gi~--------------el~~~i~~~l~  315 (322)
                      +|+|+||+|+... .....   .....+. ...++.    +++++||++|.||.              +|++.|...+.
T Consensus       318 iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          318 IVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             EEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             EEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence            8999999999763 22222   2223333 333442    68999999999998              78888876543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.70  E-value=3.8e-18  Score=162.69  Aligned_cols=158  Identities=20%  Similarity=0.240  Sum_probs=103.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      +++++|+++|.+|+|||||+++|.+..+. ....+|.|.+.....+...+..+.||||||+..+....            
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~------------   68 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR------------   68 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB------------
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH------------
Confidence            46788999999999999999999875433 22234444332222233456789999999998765422            


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHHH---HHHhcCC-CCCc
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVA---EQFKHLP-GYER  291 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~---~~~~~~~-~~~~  291 (322)
                      ...+..+|++++|+|++++...+.......+..   .   +.|+++++||+|+..... ......   ..+...+ +..+
T Consensus        69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~---~---~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~  142 (501)
T 1zo1_I           69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKA---A---QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQ  142 (501)
T ss_dssp             CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH---T---TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCE
T ss_pred             HHHHhhCCEEEEEeecccCccHHHHHHHHHHHh---c---CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCcc
Confidence            134678899999999987654444333333332   2   467999999999975321 110000   0011111 2247


Q ss_pred             EEEeecCCCCCHHHHHHHHHHH
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      ++++||++|.|+++|+++|...
T Consensus       143 ~v~vSAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          143 FVHVSAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             EEECCTTTCTTCTTHHHHTTTT
T ss_pred             EEEEeeeeccCcchhhhhhhhh
Confidence            9999999999999999998754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.70  E-value=1.6e-16  Score=155.03  Aligned_cols=160  Identities=18%  Similarity=0.266  Sum_probs=100.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee------------------CCccEEEEeCCCcc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------ADTQICIFDTPGLM  198 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~l~DtpG~~  198 (322)
                      .+.++|+++|.+|+|||||+++|++..+..... .+.|.+........                  ....+.||||||+.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~-ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREA-GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccC-CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            356899999999999999999998764422111 12222111111110                  11248999999998


Q ss_pred             cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-----
Q 020714          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-----  273 (322)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-----  273 (322)
                      .+.....            ..+..+|++|+|+|++++...+......++..      .+.|+++|+||+|+....     
T Consensus        82 ~F~~~~~------------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~------~~vPiIVViNKiDl~~~~~~~~~  143 (594)
T 1g7s_A           82 AFTTLRK------------RGGALADLAILIVDINEGFKPQTQEALNILRM------YRTPFVVAANKIDRIHGWRVHEG  143 (594)
T ss_dssp             CCTTSBC------------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSTTCCCCTT
T ss_pred             HHHHHHH------------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHH------cCCeEEEEecccccccccccccC
Confidence            7644221            24577899999999987654333333333332      256799999999996421     


Q ss_pred             -----------hH----H----HHHHHHHhcC-------------CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          274 -----------KD----L----LKVAEQFKHL-------------PGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       274 -----------~~----~----~~~~~~~~~~-------------~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                                 ..    .    .+....+...             ....+++++||++|.|+++|+++|...+.
T Consensus       144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                       00    0    0111222211             12237999999999999999999998765

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.69  E-value=2.4e-17  Score=140.94  Aligned_cols=121  Identities=13%  Similarity=0.213  Sum_probs=75.8

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeec--CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS--RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....++|+++|++|||||||+|+|.+..+....  ..+.++.       ...+..+.+|||||+..+..     .....+
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~-----~~~~~~   76 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLRY-----KLSDYL   76 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-------TGGGSSCEEEECCCCGGGTH-----HHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-------EeeCceEEEEECCCcHHHHH-----HHHHHH
Confidence            346789999999999999999999987643221  1121111       12467889999999975421     111111


Q ss_pred             HHHHhhcccccEEEEEEeCC-CCCCCcHHHHHHHHHHhccc----CCCCCcEEEEEeCCCCCCCh
Q 020714          214 ESAWSAVNLFEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQ----APPKQKRVLCMNKVDLVTKK  273 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s-~~~~~~~~~~~~~l~~~~~~----~~~~~p~ivV~NK~Dl~~~~  273 (322)
                      .   .....+|++++|+|++ +..+...  ...++..+...    ...+.|+++|+||+|+....
T Consensus        77 ~---~~~~~~~~~i~v~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  136 (218)
T 1nrj_B           77 K---TRAKFVKGLIFMVDSTVDPKKLTT--TAEFLVDILSITESSCENGIDILIACNKSELFTAR  136 (218)
T ss_dssp             H---HHGGGEEEEEEEEETTSCTTCCHH--HHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             H---hccccCCEEEEEEECCCChHHHHH--HHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence            1   1224479999999997 4333322  33333333211    22467899999999998754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.69  E-value=4.1e-16  Score=143.55  Aligned_cols=125  Identities=22%  Similarity=0.376  Sum_probs=88.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ....+|+++|.||||||||+|+|++.+ ..+++.+++|.++..+.+...+..+.|+||||+.....     .......++
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~-----~~~~~g~~~  143 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK-----DGRGRGKQV  143 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC----------CHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch-----hhhHHHHHH
Confidence            345689999999999999999999976 56788899999999999989999999999999975321     122234667


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL  269 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl  269 (322)
                      +..++.||++++|+|++++... ...+...+..+... ....|.++++||+|.
T Consensus       144 l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~-l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          144 IAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIR-LNKTPPDILIKKKEK  194 (376)
T ss_dssp             HHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEE-ETCCCCCEEEEECSS
T ss_pred             HHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHh-hccCChhhhhhHhhh
Confidence            7888999999999999653211 11222233333221 123456677777775

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.69  E-value=6.7e-16  Score=136.23  Aligned_cols=133  Identities=23%  Similarity=0.231  Sum_probs=92.0

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ....++|+++|.+|||||||+|+|++.....+...+++|.......+...+..+.||||||+..+....  ......+.+
T Consensus        33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~--~~~~~~i~~  110 (262)
T 3def_A           33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN--HQALELIKG  110 (262)
T ss_dssp             TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC--HHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch--HHHHHHHHH
Confidence            346799999999999999999999998877777778888777776677788899999999998764311  112222222


Q ss_pred             HHhhcccccEEEEEEeCCCCCCC-cHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTS-PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~-~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      .+ ....+|++++|+|++..... .+..+...+....... ...|+++|+||+|+...
T Consensus       111 ~l-~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          111 FL-VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE-IWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             HT-TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECTTCCCS
T ss_pred             HH-hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh-hhcCEEEEEeCcccCCC
Confidence            22 23478999999988653322 2234555555543221 12479999999999643

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=4.2e-17  Score=151.99  Aligned_cols=90  Identities=19%  Similarity=0.279  Sum_probs=49.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee---------------------C---CccEEEEeCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---------------------A---DTQICIFDTP  195 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~~~l~Dtp  195 (322)
                      ++|+++|.||||||||+|+|++.. ..++..+++|.....+....                     .   ...+.|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            479999999999999999999987 66778888887766654211                     1   2468999999


Q ss_pred             CcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC
Q 020714          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH  235 (322)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~  235 (322)
                      |+.....     .........+..++.+|++++|+|+++.
T Consensus        80 G~~~~a~-----~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           80 GLVPGAH-----EGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             Ccccchh-----hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            9974321     0011123445667999999999999764

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.68  E-value=9.2e-16  Score=135.96  Aligned_cols=132  Identities=20%  Similarity=0.223  Sum_probs=90.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ...++|+++|.+|+|||||+|+|++..+..++..+++|...........+..+.+|||||+..+....  ......+...
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~--~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN--DMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEEC--HHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccch--HHHHHHHHHH
Confidence            45799999999999999999999998877777778888776666666778899999999998653211  1111222221


Q ss_pred             HhhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          217 WSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                       .....+|++++|+|++... ...+..+...+....... ...|+++|+||+|+...
T Consensus       115 -~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          115 -LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             -TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCG
T ss_pred             -hhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcc-cccCEEEEEECcccCCc
Confidence             2245789999999986532 222224444443331111 12579999999999764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.68  E-value=2.4e-16  Score=160.84  Aligned_cols=162  Identities=17%  Similarity=0.166  Sum_probs=106.0

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCee----------e-----eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV----------A-----AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~----------~-----~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                      ....++|+++|.+|+|||||+++|++...          .     ......|.|.+.....+...+..+.||||||+..+
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            34578999999999999999999986310          0     01123344544333334455788999999998642


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHH---
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL---  276 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~---  276 (322)
                                  ...+...+..+|++|+|+|++++...+.......+...      ++| +|+|+||+|+.......   
T Consensus       373 ------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l------gIP~IIVVINKiDLv~d~e~le~i  434 (1289)
T 3avx_A          373 ------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV------GVPYIIVFLNKCDMVDDEELLELV  434 (1289)
T ss_dssp             ------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH------TCSCEEEEEECCTTCCCHHHHHHH
T ss_pred             ------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc------CCCeEEEEEeecccccchhhHHHH
Confidence                        33445667899999999999887655554444444432      356 78999999998643221   


Q ss_pred             HHHHHHHhcCCC----CCcEEEeecCCC--------CCHHHHHHHHHHHhh
Q 020714          277 LKVAEQFKHLPG----YERIFMTSGLKG--------AGLKALTQYLMEQFK  315 (322)
Q Consensus       277 ~~~~~~~~~~~~----~~~~~~iSa~~g--------~gi~el~~~i~~~l~  315 (322)
                      ......+....+    ..+++++||++|        .|+++|+++|.+.+.
T Consensus       435 ~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          435 EMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            222333332223    247999999999        579999999988664

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.68  E-value=5.5e-16  Score=144.86  Aligned_cols=164  Identities=27%  Similarity=0.415  Sum_probs=110.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-ccEEEEeCCCcccCCC---CCChhhHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKS---GYSHKDVKVRVE  214 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~---~~~~~~~~~~~~  214 (322)
                      ...|+++|++|||||||+|+|++... .+...+.+|.....+.+...+ ..+.++||||+.....   ....        
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~--------  227 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGL--------  227 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCH--------
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhH--------
Confidence            45689999999999999999998753 455666777776666665554 7899999999864311   1111        


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC--CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~--~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  292 (322)
                      ..+..+..++.+++++|++   ......+..+.+++....  ....|.++|+||+|+... .........+.. .+. ++
T Consensus       228 ~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~-~g~-~v  301 (416)
T 1udx_A          228 EFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAR-EGL-AV  301 (416)
T ss_dssp             HHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHT-TTS-CE
T ss_pred             HHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHh-cCC-eE
Confidence            1223456789999999996   222222222222222110  113679999999999764 333333344332 343 59


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +++||++++|+++|+++|.+.+...
T Consensus       302 i~iSA~~g~gi~eL~~~i~~~l~~~  326 (416)
T 1udx_A          302 LPVSALTGAGLPALKEALHALVRST  326 (416)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EEEECCCccCHHHHHHHHHHHHHhc
Confidence            9999999999999999999998764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.67  E-value=7.4e-16  Score=141.89  Aligned_cols=158  Identities=16%  Similarity=0.238  Sum_probs=95.7

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCceeeeE-----------------EEE---------
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHEV-----------------LGV---------  181 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t~~~~-----------------~~~---------  181 (322)
                      +.....++|+++|.||||||||+++|.      +.++..+...++.+....                 ...         
T Consensus        74 ~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~  153 (355)
T 3p32_A           74 PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTL  153 (355)
T ss_dssp             GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCH
T ss_pred             hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccc
Confidence            334567899999999999999999985      334333333332221000                 000         


Q ss_pred             -------------EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHH
Q 020714          182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (322)
Q Consensus       182 -------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~  248 (322)
                                   +...+..+.|+||||+...       .        ...+..+|++++|+|........  .+     
T Consensus       154 ~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~-------~--------~~~~~~aD~vl~V~d~~~~~~~~--~l-----  211 (355)
T 3p32_A          154 GGVTRATRETVVLLEAAGFDVILIETVGVGQS-------E--------VAVANMVDTFVLLTLARTGDQLQ--GI-----  211 (355)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH-------H--------HHHHTTCSEEEEEEESSTTCTTT--TC-----
T ss_pred             cchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH-------H--------HHHHHhCCEEEEEECCCCCccHH--HH-----
Confidence                         0124678999999997531       1        12247789999999985432211  11     


Q ss_pred             HhcccCCCCCcEEEEEeCCCCCCChhH---HHHHHHHHhcC-----CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          249 RMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       249 ~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~~~~~~~~-----~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                        . ......|+++|+||+|+......   ..+....+...     .+..+++++||++|.|+++++++|.+.+..
T Consensus       212 --~-~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          212 --K-KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             --C-TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             --H-HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence              1 11113579999999998653221   11111221111     123479999999999999999999988754

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.67  E-value=2.5e-17  Score=156.61  Aligned_cols=151  Identities=17%  Similarity=0.218  Sum_probs=95.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe--ee----------------------------eecCCCCceeeeEEEEEeeCCc
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK--VA----------------------------AVSRKTNTTTHEVLGVMTKADT  187 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~--~~----------------------------~~~~~~~~t~~~~~~~~~~~~~  187 (322)
                      ..++|+++|.+|+|||||+|+|++..  +.                            ......|.|.+.....+...+.
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~   85 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence            46899999999999999999997531  10                            0001245555544444556677


Q ss_pred             cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCC-------cHHHHHHHHHHhcccCCCCCc-
Q 020714          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS-------PDSRVIRLIERMGKQAPPKQK-  259 (322)
Q Consensus       188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~-------~~~~~~~~l~~~~~~~~~~~p-  259 (322)
                      .+.||||||+..+            ...+...+..+|++|+|+|++++...       +.......+..+      +.| 
T Consensus        86 ~~~iiDtPGh~~f------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~------~v~~  147 (458)
T 1f60_A           86 QVTVIDAPGHRDF------------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQ  147 (458)
T ss_dssp             EEEEEECCCCTTH------------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCE
T ss_pred             eEEEEECCCcHHH------------HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc------CCCe
Confidence            8999999997632            33455668899999999999653211       222222222221      344 


Q ss_pred             EEEEEeCCCCCCC-hhH---HHHHHHHHhcCCCC----CcEEEeecCCCCCHHHH
Q 020714          260 RVLCMNKVDLVTK-KKD---LLKVAEQFKHLPGY----ERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       260 ~ivV~NK~Dl~~~-~~~---~~~~~~~~~~~~~~----~~~~~iSa~~g~gi~el  306 (322)
                      +++|+||+|+... ...   .......+....++    .+++++||++|.|+.++
T Consensus       148 iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          148 LIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             EEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            8999999999742 222   22222222222232    47999999999999743

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.66  E-value=7.2e-16  Score=142.17  Aligned_cols=172  Identities=13%  Similarity=0.081  Sum_probs=82.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCC------CCceee--eEEEEEeeCC--ccEEEEeCCCcccCCCC---
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK------TNTTTH--EVLGVMTKAD--TQICIFDTPGLMLNKSG---  203 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~------~~~t~~--~~~~~~~~~~--~~~~l~DtpG~~~~~~~---  203 (322)
                      ...++|+++|.+|+|||||+|+|.+.........      ...|..  .....+...+  ..+.+|||||+......   
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            4568999999999999999999877543322211      111221  1111122223  26899999999533210   


Q ss_pred             --CChhhHHHHHHHHHhhcc----------cccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714          204 --YSHKDVKVRVESAWSAVN----------LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (322)
Q Consensus       204 --~~~~~~~~~~~~~~~~~~----------~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~  271 (322)
                        .....+...+...+....          .+++++++++...+ +..... ..++..+.    .++|+|+|+||+|+..
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~-~l~~~d-~~~~~~l~----~~~piIlV~NK~Dl~~  188 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD-VAFMKAIH----NKVNIVPVIAKADTLT  188 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSS-SCCHHH-HHHHHHTC----S-SCEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCC-CcchhH-HHHHHHhc----cCCCEEEEEECCCCCC
Confidence              011222223333333222          22467777765322 222222 14444443    3578999999999987


Q ss_pred             ChhHHH--HHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          272 KKKDLL--KVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       272 ~~~~~~--~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ..+...  .....+....++ +++++||++|.| ++.+.++.+.+.+
T Consensus       189 ~~ev~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          189 LKERERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             HHHHHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHh
Confidence            544322  344555555666 699999999999 8887777776654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.66  E-value=4e-16  Score=143.98  Aligned_cols=168  Identities=17%  Similarity=0.209  Sum_probs=103.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceee-----------------------------------------
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH-----------------------------------------  176 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~-----------------------------------------  176 (322)
                      ....|+|+|.+|||||||+|+|++..+...+... +|+.                                         
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~  111 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET  111 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence            3458999999999999999999997653222111 1100                                         


Q ss_pred             --------------eEEEEEeeCCccEEEEeCCCcccCCCC-CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH
Q 020714          177 --------------EVLGVMTKADTQICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS  241 (322)
Q Consensus       177 --------------~~~~~~~~~~~~~~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~  241 (322)
                                    ....+.......+.||||||+..+... .+..........+...+..+|++|+|+|.+.... ...
T Consensus       112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~-~~~  190 (360)
T 3t34_A          112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL-ATS  190 (360)
T ss_dssp             HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG-GGC
T ss_pred             HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc-CCH
Confidence                          011112223557899999999875431 1222222333444456788999999998754221 112


Q ss_pred             HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHH
Q 020714          242 RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLM  311 (322)
Q Consensus       242 ~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~  311 (322)
                      ....++..+...   +.|+++|+||+|+..................+. +++++|++++.|+++.+.++.
T Consensus       191 ~~~~l~~~~~~~---~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          191 DAIKISREVDPS---GDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             HHHHHHHHSCTT---CTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHHH
T ss_pred             HHHHHHHHhccc---CCCEEEEEeCCccCCCcccHHHHHcCccccccC-CeEEEEECChHHhccCCCHHH
Confidence            344555555433   567999999999987544333333333333444 589999999999987765543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.64  E-value=4.5e-16  Score=133.35  Aligned_cols=155  Identities=19%  Similarity=0.212  Sum_probs=94.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC-----eeeeecCCCCceee--------eEEEEE------------------eeCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTH--------EVLGVM------------------TKAD  186 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~~~~~~t~~--------~~~~~~------------------~~~~  186 (322)
                      ...+|+++|.+|||||||+|+|++.     ++..+...++++.+        .....+                  ...+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            5678999999999999999999754     23334444443211        010111                  1134


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK  266 (322)
                      ..+.+|||+|+... +    ..         .. ..++.+++|+|+.....    ....+....      +.|+++|+||
T Consensus       109 ~d~iiidt~G~~~~-~----~~---------~~-~~~~~~i~vvd~~~~~~----~~~~~~~~~------~~~~iiv~NK  163 (221)
T 2wsm_A          109 CDLLLIENVGNLIC-P----VD---------FD-LGENYRVVMVSVTEGDD----VVEKHPEIF------RVADLIVINK  163 (221)
T ss_dssp             CSEEEEEEEEBSSG-G----GG---------CC-CSCSEEEEEEEGGGCTT----HHHHCHHHH------HTCSEEEEEC
T ss_pred             CCEEEEeCCCCCCC-C----ch---------hc-cccCcEEEEEeCCCcch----hhhhhhhhh------hcCCEEEEec
Confidence            57889999996211 0    00         01 13578999999865421    111222222      2568999999


Q ss_pred             CCCCCCh-hHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          267 VDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       267 ~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +|+.... .........+.......+++++||++|.|+++++++|.+.+..+
T Consensus       164 ~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          164 VALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             GGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             ccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            9986421 12333333333323334799999999999999999999887654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.63  E-value=3.9e-16  Score=148.72  Aligned_cols=153  Identities=16%  Similarity=0.167  Sum_probs=85.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC--eee----------------------ee------cCCCCceeeeEEEEEeeCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT--KVA----------------------AV------SRKTNTTTHEVLGVMTKAD  186 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~--~~~----------------------~~------~~~~~~t~~~~~~~~~~~~  186 (322)
                      ...++|+++|.+|+|||||+++|+..  .+.                      .+      ....|.|.+.....+...+
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            45689999999999999999998631  110                      00      1123444443333344567


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCC-------CcHHHHHHHHHHhcccCCCCCc
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK  259 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~-------~~~~~~~~~l~~~~~~~~~~~p  259 (322)
                      ..+.||||||+..+..            .+...+..+|++|+|+|++++..       .+.......+...      +.|
T Consensus       121 ~~~~iiDtPGh~~f~~------------~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~------~vp  182 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVT------------NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------GIN  182 (467)
T ss_dssp             EEEEECCCCC-----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------TCS
T ss_pred             eEEEEEECCCcHHHHH------------HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc------CCC
Confidence            7899999999875522            23345688999999999976521       1222222222222      355


Q ss_pred             -EEEEEeCCCCCCC---hhHHH---HHHHHHhcCC-C-----CCcEEEeecCCCCCHHHHH
Q 020714          260 -RVLCMNKVDLVTK---KKDLL---KVAEQFKHLP-G-----YERIFMTSGLKGAGLKALT  307 (322)
Q Consensus       260 -~ivV~NK~Dl~~~---~~~~~---~~~~~~~~~~-~-----~~~~~~iSa~~g~gi~el~  307 (322)
                       +++|+||+|+...   ....+   .....+.... +     ..+++++||++|.|+++++
T Consensus       183 ~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          183 HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             EEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence             8999999999642   11111   1122222111 2     2369999999999998754

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.63  E-value=2e-15  Score=145.55  Aligned_cols=118  Identities=19%  Similarity=0.287  Sum_probs=76.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe--eee-------------------ecCCCCceeeeEEEEEeeCCccEEEEeCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VAA-------------------VSRKTNTTTHEVLGVMTKADTQICIFDTP  195 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~--~~~-------------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dtp  195 (322)
                      .+..+|+++|.+|+|||||+|+|+...  ...                   .....|.|.......+...+..+.|||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            356899999999999999999998521  100                   00122333333333355667889999999


Q ss_pred             CcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      |+..+.            ..+...+..+|++|+|+|++.+...+   ...++..+...   +.|+++|+||+|+...
T Consensus        91 G~~df~------------~~~~~~l~~aD~~IlVvDa~~g~~~~---t~~~~~~~~~~---~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFS------------EDTYRTLTAVDCCLMVIDAAKGVEDR---TRKLMEVTRLR---DTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCC------------HHHHHGGGGCSEEEEEEETTTCSCHH---HHHHHHHHTTT---TCCEEEEEECTTSCCS
T ss_pred             CChhHH------------HHHHHHHHHCCEEEEEEeCCccchHH---HHHHHHHHHHc---CCCEEEEEcCcCCccc
Confidence            997542            12334577899999999998764322   22333333322   5679999999999764

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.62  E-value=9.4e-17  Score=148.48  Aligned_cols=218  Identities=15%  Similarity=0.106  Sum_probs=130.4

Q ss_pred             CCceEEEccccCCCCCC-C----------------CCCCCCCCCC----hhhHHHH-HHhhCC---eEEEeec-cccchh
Q 020714           45 DCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQ----EPTWDEK-YRERTD---RIVFGEE-AQKGKL   98 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~----~~~w~~~-~~~~~~---~i~f~~~-~~~~~~   98 (322)
                      .+++++.+.|++.|..+ .                ||+|+.+++.    ...|... +...+.   .+++.++ ++.|..
T Consensus        71 ~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~  150 (369)
T 3ec1_A           71 SKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMA  150 (369)
T ss_dssp             HCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHH
T ss_pred             cCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHH
Confidence            46788888888876644 2                8999987643    4567654 455554   5788888 888887


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCC-----eeeeecCCCCc
Q 020714           99 RIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNT  173 (322)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~~~~~~  173 (322)
                      .+++.              +...+               ...+++++|.||||||||+|+|++.     ....++..+|+
T Consensus       151 ~L~~~--------------I~~~~---------------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gt  201 (369)
T 3ec1_A          151 KVMEA--------------INRYR---------------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGT  201 (369)
T ss_dssp             HHHHH--------------HHHHH---------------TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTS
T ss_pred             HHHHH--------------HHhhc---------------ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCe
Confidence            77211              11111               1246999999999999999999986     55677888999


Q ss_pred             eeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc
Q 020714          174 TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ  253 (322)
Q Consensus       174 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~  253 (322)
                      |.......   .+..+.++||||+...... . +.........+..-...+.++++++.........      +..+...
T Consensus       202 T~~~~~~~---~~~~~~liDtPG~~~~~~~-~-~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~------l~~l~~l  270 (369)
T 3ec1_A          202 TLDMIEIP---LESGATLYDTPGIINHHQM-A-HFVDARDLKIITPKREIHPRVYQLNEGQTLFFGG------LARLDYI  270 (369)
T ss_dssp             SCEEEEEE---CSTTCEEEECCSCCCCSSG-G-GGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETT------TEEEEEE
T ss_pred             EEeeEEEE---eCCCeEEEeCCCcCcHHHH-H-HHHhHHHHHHHhcccccCceEEEEcCCceEEECC------EEEEEEc
Confidence            98766532   2345899999999754311 1 1111111111111266799999998832100000      0001111


Q ss_pred             CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHH
Q 020714          254 APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLK  304 (322)
Q Consensus       254 ~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~  304 (322)
                      ...+.|+++++||+|..+... .+...+.+.+..+. .+.+.++..+.++.
T Consensus       271 ~~~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g~-~l~p~~~~~~~~~~  319 (369)
T 3ec1_A          271 KGGRRSFVCYMANELTVHRTK-LEKADSLYANQLGE-LLSPPSKRYAAEFP  319 (369)
T ss_dssp             ESSSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBTT-TBCSSCGGGTTTCC
T ss_pred             cCCCceEEEEecCCccccccc-HHHHHHHHHHhcCC-ccCCCCchhhhhcc
Confidence            123567999999999976532 12222223332333 35556665555543

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.62  E-value=1.4e-15  Score=150.75  Aligned_cols=168  Identities=19%  Similarity=0.247  Sum_probs=106.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCcee-----------------------------------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-----------------------------------------  175 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~-----------------------------------------  175 (322)
                      ...++|+|+|.+|+|||||+|+|++..+...+..+ +|+                                         
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~  127 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  127 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence            45679999999999999999999997653222211 111                                         


Q ss_pred             ----------e-eEEEEEeeCCccEEEEeCCCcccCCC-CCCh---hhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcH
Q 020714          176 ----------H-EVLGVMTKADTQICIFDTPGLMLNKS-GYSH---KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD  240 (322)
Q Consensus       176 ----------~-~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~---~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~  240 (322)
                                . ....+.......+.|+||||+..... ..+.   ......+...+.  ..+|++++|+|++......+
T Consensus       128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d  205 (772)
T 3zvr_A          128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSD  205 (772)
T ss_dssp             HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCH
T ss_pred             hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhH
Confidence                      1 11111223455789999999986321 1121   122222332222  67899999999987666655


Q ss_pred             HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH-H-hcCCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714          241 SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-F-KHLPGYERIFMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       241 ~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~-~-~~~~~~~~~~~iSa~~g~gi~el~~~i~~  312 (322)
                      .  ..++..+...   +.|+++|+||+|+............. . ....++.+++++||++|.|+++|++.|.+
T Consensus       206 ~--l~ll~~L~~~---g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          206 A--LKIAKEVDPQ---GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             H--HHHHHHHCTT---CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             H--HHHHHHHHhc---CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            3  2344444433   46799999999998654322221110 1 01124456899999999999999999987

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.62  E-value=6e-15  Score=146.73  Aligned_cols=118  Identities=23%  Similarity=0.293  Sum_probs=75.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe--e---eeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCccc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK--V---AAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLML  199 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~--~---~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~  199 (322)
                      .+..+|+++|.+|+|||||+|+|+...  .   ..+.            ...+.|.......+...+..+.||||||+..
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   89 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD   89 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence            457899999999999999999997311  0   0000            0223444433334555678899999999975


Q ss_pred             CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      +.            ......+..+|++|+|+|++.+...+.......+..   .   +.|+++|+||+|+...
T Consensus        90 f~------------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~---~---~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           90 FT------------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK---Y---KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             CH------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH---T---TCCEEEEEECTTSTTC
T ss_pred             hH------------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH---c---CCCEEEEEECCCcccC
Confidence            31            122344567899999999987655444443333332   2   4679999999999764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.60  E-value=3.7e-15  Score=136.47  Aligned_cols=155  Identities=16%  Similarity=0.241  Sum_probs=93.9

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCceeee--EE---------------EE----------
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHE--VL---------------GV----------  181 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t~~~--~~---------------~~----------  181 (322)
                      ....+..|+++|++|+|||||+|.|.      +.++..+...++++...  ..               .+          
T Consensus        52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~  131 (341)
T 2p67_A           52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLG  131 (341)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----
T ss_pred             ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccc
Confidence            44567889999999999999999986      34444444444333210  00               00          


Q ss_pred             ------------EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714          182 ------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER  249 (322)
Q Consensus       182 ------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~  249 (322)
                                  +...+..+.|+||||+..+      ..         .....+|++++|+|++.+.....  +..  ..
T Consensus       132 g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~------~~---------~~~~~aD~vl~Vvd~~~~~~~~~--l~~--~~  192 (341)
T 2p67_A          132 GASQRARELMLLCEAAGYDVVIVETVGVGQS------ET---------EVARMVDCFISLQIAGGGDDLQG--IKK--GL  192 (341)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEEEECCTTH------HH---------HHHTTCSEEEEEECC------CC--CCH--HH
T ss_pred             hhHHHHHHHHHHhhccCCCEEEEeCCCccch------HH---------HHHHhCCEEEEEEeCCccHHHHH--HHH--hh
Confidence                        0034678999999998632      11         12478899999999864321100  000  00


Q ss_pred             hcccCCCCCcEEEEEeCCCCCCChhHHH----HHHHHHhcCC-----CCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          250 MGKQAPPKQKRVLCMNKVDLVTKKKDLL----KVAEQFKHLP-----GYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       250 ~~~~~~~~~p~ivV~NK~Dl~~~~~~~~----~~~~~~~~~~-----~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .      +.|.++|+||+|+.... ...    +....+....     +..+++++||++|.|+++++++|.+.+.
T Consensus       193 ~------~~p~ivv~NK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          193 M------EVADLIVINKDDGDNHT-NVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             H------HHCSEEEECCCCTTCHH-HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             h------cccCEEEEECCCCCChH-HHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1      24589999999997642 222    2222111111     1356899999999999999999998765

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.60  E-value=7.8e-17  Score=148.93  Aligned_cols=216  Identities=14%  Similarity=0.102  Sum_probs=122.6

Q ss_pred             CCceEEEccccCCCCCC-----------------CCCCCCCCCC----ChhhHHHH-HHhhCC---eEEEeec-cccchh
Q 020714           45 DCDSVFDSSYFRIPTID-----------------DPQNNNAAKK----QEPTWDEK-YRERTD---RIVFGEE-AQKGKL   98 (322)
Q Consensus        45 ~~d~v~~~~da~~p~~~-----------------~~k~dl~~~~----~~~~w~~~-~~~~~~---~i~f~~~-~~~~~~   98 (322)
                      ..|+++.+.|++.|...                 .||+|+.+++    ....|..+ +...+.   .+++.++ ++.|..
T Consensus        69 ~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~  148 (368)
T 3h2y_A           69 SDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIA  148 (368)
T ss_dssp             SCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHH
T ss_pred             cCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHH
Confidence            35677777776654322                 2899998765    35567554 345555   5788888 888887


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCe------eeeecCCCC
Q 020714           99 RIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK------VAAVSRKTN  172 (322)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~------~~~~~~~~~  172 (322)
                      ++++.              +....               ...+++++|.+|||||||+|+|++..      ...++..+|
T Consensus       149 ~L~~~--------------l~~~~---------------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~g  199 (368)
T 3h2y_A          149 ELADA--------------IEYYR---------------GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPG  199 (368)
T ss_dssp             HHHHH--------------HHHHH---------------TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC-
T ss_pred             HHHhh--------------hhhhc---------------ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCC
Confidence            77211              11111               13469999999999999999998753      455788889


Q ss_pred             ceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc
Q 020714          173 TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK  252 (322)
Q Consensus       173 ~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~  252 (322)
                      +|+......   -+..+.++||||+...... . +.........+......+.++++++..........   ..+..+. 
T Consensus       200 tT~~~~~~~---~~~~~~liDtPG~~~~~~~-~-~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l---~~~d~l~-  270 (368)
T 3h2y_A          200 TTLDLIDIP---LDEESSLYDTPGIINHHQM-A-HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGL---ARFDYVS-  270 (368)
T ss_dssp             ---CEEEEE---SSSSCEEEECCCBCCTTSG-G-GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTT---EEEEEEE-
T ss_pred             eecceEEEE---ecCCeEEEeCCCcCcHHHH-H-HHhhHHHHHHhccccccCceEEEEcCCCEEEEcce---EEEEEec-
Confidence            998766532   2334899999999765321 1 11111122222224666889999987321100000   0011112 


Q ss_pred             cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCC
Q 020714          253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAG  302 (322)
Q Consensus       253 ~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~g  302 (322)
                        ..+.|+++++||+|..+... .+...+.+.+..+. .+++.++..+.+
T Consensus       271 --~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~-~l~p~~~~~~~~  316 (368)
T 3h2y_A          271 --GGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGD-LLSPPTPEELEN  316 (368)
T ss_dssp             --SSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTT-TBCSSCHHHHHT
T ss_pred             --CCCceEEEEecCcccccccc-HHHHHHHHHHHhCC-ccCCCchhhHhh
Confidence              22568999999999987532 33333333333333 245555443333

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.60  E-value=4.9e-15  Score=147.42  Aligned_cols=118  Identities=17%  Similarity=0.253  Sum_probs=77.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC--eee---eec------------CCCCceeeeEEEEEeeCCccEEEEeCCCccc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT--KVA---AVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLML  199 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~--~~~---~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~  199 (322)
                      .+..+|+++|.+|+|||||+|+|+..  ...   .+.            ...++|.......+...+..+.||||||+..
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   87 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD   87 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence            35689999999999999999999841  110   010            1234444444444556678899999999975


Q ss_pred             CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      +..            .+...+..+|++|+|+|++.+.......+...+..   .   +.|+++|+||+|+...
T Consensus        88 f~~------------~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~---~---~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           88 FTV------------EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT---Y---GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CCH------------HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH---T---TCCEEEEEECTTSTTC
T ss_pred             hHH------------HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH---c---CCCEEEEEECCCcccc
Confidence            421            12234566899999999987655544444443333   2   4679999999999764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.60  E-value=7.5e-15  Score=145.50  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=77.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeee-----ee------cC------CCCceeeeEEEEEeeCCccEEEEeCCCccc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AV------SR------KTNTTTHEVLGVMTKADTQICIFDTPGLML  199 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~-----~~------~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~  199 (322)
                      ....+|+++|.+|+|||||+++|++....     .+      ..      ..+.|.......+...+..+.||||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            45678999999999999999999842111     00      00      123444445445556678899999999875


Q ss_pred             CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714          200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (322)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~  270 (322)
                      +.            ......+..+|++++|+|+..+...+...+...+..   .   +.|+++|+||+|+.
T Consensus        87 f~------------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~---~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FV------------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER---L---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GH------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH---T---TCCEEEEEECGGGC
T ss_pred             hH------------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH---c---cCCEEEEecCCchh
Confidence            31            123344567899999999877654433333333332   2   46799999999997

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.57  E-value=8.2e-15  Score=122.53  Aligned_cols=120  Identities=14%  Similarity=0.220  Sum_probs=74.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeee--cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...++|+++|.+|||||||+|+|.+......  ...++++.       ...+..+.+|||||+..+...     ....+.
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~  113 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLRYK-----LSDYLK  113 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCC-----HHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCchHHHH-----HHHHHH
Confidence            5678999999999999999999998764321  11122221       125678899999999765431     111121


Q ss_pred             HHHhhcccccEEEEEEeCC-CCCCCcHHHHHHHHHHhccc----CCCCCcEEEEEeCCCCCCCh
Q 020714          215 SAWSAVNLFEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQ----APPKQKRVLCMNKVDLVTKK  273 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s-~~~~~~~~~~~~~l~~~~~~----~~~~~p~ivV~NK~Dl~~~~  273 (322)
                         ..+..+|++++|+|++ +.  ........++..+...    ...+.|+++|+||+|+....
T Consensus       114 ---~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          114 ---TRAKFVKGLIFMVDSTVDP--KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             ---HHGGGEEEEEEEEETTCCH--HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ---hhcccCCEEEEEEECCCCc--hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence               2235689999999996 21  1112333444333211    22467899999999998654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.57  E-value=4.7e-14  Score=140.51  Aligned_cols=118  Identities=19%  Similarity=0.201  Sum_probs=75.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe--eee---ec------------CCCCceeeeEEEEEeeCC-------ccEEEE
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VAA---VS------------RKTNTTTHEVLGVMTKAD-------TQICIF  192 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~--~~~---~~------------~~~~~t~~~~~~~~~~~~-------~~~~l~  192 (322)
                      .+..+|+++|.+|+|||||+++|+...  +..   +.            ...+.|.......+...+       ..+.||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            356789999999999999999996421  110   00            012334333333333444       789999


Q ss_pred             eCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       193 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      ||||+..+..            .+...+..+|++|+|+|++.+...+...+.....   ..   +.|+++|+||+|+...
T Consensus        88 DTPG~~df~~------------~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~---~~---~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           88 DTPGHVDFTI------------EVERSMRVLDGAVMVYCAVGGVQPQSETVWRQAN---KY---KVPRIAFVNKMDRMGA  149 (704)
T ss_pred             eCCCccchHH------------HHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHH---Hc---CCCEEEEEeCCCcccc
Confidence            9999975421            2223456789999999998765443333333222   22   4679999999998754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.56  E-value=3.3e-14  Score=130.18  Aligned_cols=90  Identities=21%  Similarity=0.263  Sum_probs=59.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-----------------ccEEEEeCCCcccCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNK  201 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~  201 (322)
                      .++|+++|.||||||||+|+|++.. ..++..+++|.....+.+...+                 ..+.+|||||+..+.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            3689999999999999999999876 4566677777665544443333                 468999999997532


Q ss_pred             CCCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (322)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~  234 (322)
                      .     .........+..++.+|++++|+|+++
T Consensus        81 ~-----~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 S-----KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             H-----HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             c-----ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            1     000001123345688999999999975

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.54  E-value=5.2e-14  Score=128.51  Aligned_cols=157  Identities=20%  Similarity=0.270  Sum_probs=94.3

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCceee-----------------eEEEE---------
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTH-----------------EVLGV---------  181 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t~~-----------------~~~~~---------  181 (322)
                      .....+..++++|+||+|||||+|.|.      +.++...+..+.++..                 .....         
T Consensus        50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l  129 (337)
T 2qm8_A           50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTL  129 (337)
T ss_dssp             GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSH
T ss_pred             cccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccc
Confidence            345677889999999999999999997      3444333322222110                 00000         


Q ss_pred             -------------EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHH
Q 020714          182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE  248 (322)
Q Consensus       182 -------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~  248 (322)
                                   +...+.++.|+||||+...      ..         .....+|++++++|++.+..  ...+...+.
T Consensus       130 ~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~------~~---------~v~~~~d~vl~v~d~~~~~~--~~~i~~~i~  192 (337)
T 2qm8_A          130 GGVAAKTRETMLLCEAAGFDVILVETVGVGQS------ET---------AVADLTDFFLVLMLPGAGDE--LQGIKKGIF  192 (337)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC------HH---------HHHTTSSEEEEEECSCC--------CCTTHH
T ss_pred             cchHHHHHHHHHHHhcCCCCEEEEECCCCCcc------hh---------hHHhhCCEEEEEEcCCCccc--HHHHHHHHh
Confidence                         1125788999999998742      11         12357799999999853211  000101111


Q ss_pred             HhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH----HhcCC-----CCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ----FKHLP-----GYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       249 ~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~----~~~~~-----~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                              ..+.++|+||+|+.............    +....     +.++++.+||++|.|+++|++.|.+.+.
T Consensus       193 --------~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          193 --------ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             --------HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             --------ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                    12467888999986543222111122    21111     1357999999999999999999998764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.54  E-value=1.4e-14  Score=127.24  Aligned_cols=170  Identities=18%  Similarity=0.185  Sum_probs=98.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHh-----CCeeeeecCCCCceee------------eEEEEE-----------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMV-----GTKVAAVSRKTNTTTH------------EVLGVM-----------------  182 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~-----~~~~~~~~~~~~~t~~------------~~~~~~-----------------  182 (322)
                      .+...++++|.+||||||+++.|.     +.++..+...++.+..            ......                 
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL   91 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence            356788999999999999999997     6666655544432110            000000                 


Q ss_pred             ------------e-eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHH-HH
Q 020714          183 ------------T-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIR-LI  247 (322)
Q Consensus       183 ------------~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~-~l  247 (322)
                                  . ..+..+.|+||||+..+..      ...........+.. +++++++|+.......+. .... ..
T Consensus        92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~------~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~  164 (262)
T 1yrb_A           92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFL------FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFAL  164 (262)
T ss_dssp             HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHH------HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhh------hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHH
Confidence                        0 0124799999999864211      00001122234456 899999998543322221 1111 11


Q ss_pred             HHhcccCCCCCcEEEEEeCCCCCCChhH--HHHH-------HHH------------------HhcCCCCCcEEEeecCCC
Q 020714          248 ERMGKQAPPKQKRVLCMNKVDLVTKKKD--LLKV-------AEQ------------------FKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       248 ~~~~~~~~~~~p~ivV~NK~Dl~~~~~~--~~~~-------~~~------------------~~~~~~~~~~~~iSa~~g  300 (322)
                      .....   .+.|+++|+||+|+......  ..+.       ...                  ........+++++||++|
T Consensus       165 ~~~~~---~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~  241 (262)
T 1yrb_A          165 LIDLR---LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR  241 (262)
T ss_dssp             HHHHH---HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC
T ss_pred             HHhcc---cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCc
Confidence            11111   14679999999999764321  1111       001                  112122236899999999


Q ss_pred             CCHHHHHHHHHHHhhh
Q 020714          301 AGLKALTQYLMEQFKD  316 (322)
Q Consensus       301 ~gi~el~~~i~~~l~~  316 (322)
                      .|+++++++|.+.+..
T Consensus       242 ~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          242 EGFEDLETLAYEHYCT  257 (262)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhcc
Confidence            9999999999988764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.53  E-value=3.9e-14  Score=121.65  Aligned_cols=156  Identities=15%  Similarity=0.244  Sum_probs=88.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC-----eeeeecCCCCceeee--------EEEEEe--------------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTHE--------VLGVMT--------------------  183 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~~~~~~t~~~--------~~~~~~--------------------  183 (322)
                      ...++|+++|.+|||||||+++|+..     ..+.+...++++.+.        ....+.                    
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  115 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN  115 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence            35789999999999999999999754     223333223211110        000011                    


Q ss_pred             eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ..+..++++|++|......             .+.  ...+.++.++|..........    ....+      ..|+++|
T Consensus       116 ~~~~d~~~id~~g~i~~~~-------------s~~--~~~~~~~~v~~~~~~~~~~~~----~~~~~------~~~~iiv  170 (226)
T 2hf9_A          116 LDEIDLLFIENVGNLICPA-------------DFD--LGTHKRIVVISTTEGDDTIEK----HPGIM------KTADLIV  170 (226)
T ss_dssp             GGGCSEEEEECCSCSSGGG-------------GCC--CSCSEEEEEEEGGGCTTTTTT----CHHHH------TTCSEEE
T ss_pred             cCCCCEEEEeCCCCccCcc-------------hhh--hccCcEEEEEecCcchhhHhh----hhhHh------hcCCEEE
Confidence            0112677788877532100             011  123556677775322111110    01111      2468999


Q ss_pred             EeCCCCCCCh-hHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          264 MNKVDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       264 ~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +||+|+.... .........+.......+++++||++|.|+++++++|.+.+..+
T Consensus       171 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  225 (226)
T 2hf9_A          171 INKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV  225 (226)
T ss_dssp             EECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             EeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence            9999986432 12223233333222334799999999999999999999888653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.51  E-value=7.7e-14  Score=135.06  Aligned_cols=117  Identities=16%  Similarity=0.262  Sum_probs=78.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC--e-------------------eeeecCCCCceeeeEEEEEeeCCccEEEEeCCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT--K-------------------VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG  196 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~--~-------------------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG  196 (322)
                      +.-+|+|+|..++|||||..+|+..  .                   .......-|.|.......+.+.+..+.|+||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            4567999999999999999998620  0                   001112224444444445667889999999999


Q ss_pred             cccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      ..+|..            .+...++.+|++|+|+|+..+...+...+.....+.      +.|.++++||+|....
T Consensus       110 HvDF~~------------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~------~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          110 HQDFSE------------DTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR------ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             GGGCSH------------HHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT------TCCEEEEEECTTSCCC
T ss_pred             cHHHHH------------HHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh------CCceEEEEecccchhc
Confidence            998742            222445677999999999887655555555554443      3579999999998764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.49  E-value=1.1e-13  Score=124.38  Aligned_cols=170  Identities=16%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC-eeeeecCCC------Cceee-eEEEE-EeeC--CccEEEEeCCCcccCCCC-CC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT-KVAAVSRKT------NTTTH-EVLGV-MTKA--DTQICIFDTPGLMLNKSG-YS  205 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~-~~~~~~~~~------~~t~~-~~~~~-~~~~--~~~~~l~DtpG~~~~~~~-~~  205 (322)
                      -.++|+++|++|||||||+|+|.+. .....+ .+      ..|.. ..... ....  ...+.+|||+|+...... ..
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            4688999999999999999998875 322211 10      01111 11111 1111  346899999999432110 00


Q ss_pred             hhhHH----HHHHHHHhhc----------ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714          206 HKDVK----VRVESAWSAV----------NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (322)
Q Consensus       206 ~~~~~----~~~~~~~~~~----------~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~  271 (322)
                      ...+.    ..+...+..+          ..+++++++.+.+.+ +..... ..++..+.    ...++++|+||+|+..
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~-~~~l~~l~----~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD-VAFMKAIH----NKVNIVPVIAKADTLT  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH-HHHHHHHT----TTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH-HHHHHHHH----hcCCEEEEEEeCCCCC
Confidence            01111    1111222222          123445555554332 122222 24555553    2457999999999986


Q ss_pred             Chh--HHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          272 KKK--DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       272 ~~~--~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ..+  ...+....+...++. +++++||++| |++++|.++.+.+.+
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhc
Confidence            433  222334444444555 6999999999 999999999988764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.46  E-value=2.1e-13  Score=127.55  Aligned_cols=169  Identities=17%  Similarity=0.165  Sum_probs=72.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecC------CCCceeeeEEEE-EeeCC--ccEEEEeCCCcccCCCCC-Chh
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR------KTNTTTHEVLGV-MTKAD--TQICIFDTPGLMLNKSGY-SHK  207 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~------~~~~t~~~~~~~-~~~~~--~~~~l~DtpG~~~~~~~~-~~~  207 (322)
                      -.++|+|+|++|||||||+|+|++......+.      ...++....... +...+  ..+.+|||+|+....... ...
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            45789999999999999999999876532211      011111111111 11122  367899999997542110 001


Q ss_pred             hHHH----HHHHHH--------hhccccc--EEEEEEeCC-CCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          208 DVKV----RVESAW--------SAVNLFE--VLMVVFDVH-RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       208 ~~~~----~~~~~~--------~~~~~ad--~ii~v~D~s-~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      .+..    .+...+        ..+..++  +++++.+.+ .+....+   ..++..+..    +.|+|+|+||+|+...
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d---~~~lk~L~~----~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD---IEFMKRLHE----KVNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH---HHHHHHHTT----TSEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH---HHHHHHHhc----cCcEEEEEEcccCccH
Confidence            1111    111111        1123333  455555443 2222222   245555542    5789999999999865


Q ss_pred             hhHHH--HHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          273 KKDLL--KVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       273 ~~~~~--~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      .+...  .........++. +++++|++++.++++++..|...+
T Consensus       183 ~ev~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          183 EECQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-CCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence            43221  222333333444 589999999999999888877654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.46  E-value=2.5e-13  Score=124.95  Aligned_cols=89  Identities=22%  Similarity=0.331  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee---------------------CCccEEEEeCCCcc
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---------------------ADTQICIFDTPGLM  198 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~~~l~DtpG~~  198 (322)
                      ++|+++|.||||||||+|+|++.. +.+...+++|.....+....                     .+..+.+|||||+.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            468999999999999999999865 44556666666555444322                     13468999999998


Q ss_pred             cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714          199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (322)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~  234 (322)
                      .+....  ..+   -...+..++.+|++++|+|+++
T Consensus        81 ~~a~~~--~~l---g~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           81 KGAHKG--EGL---GNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCSS--SCT---THHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccc--chH---HHHHHHHHHhCCEEEEEEECCC
Confidence            653211  111   1233455788999999999975

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.43  E-value=3.1e-13  Score=130.94  Aligned_cols=131  Identities=20%  Similarity=0.278  Sum_probs=79.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeee--eecCCCCceeeeEEEEE--------------------------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVM--------------------------------  182 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~--~~~~~~~~t~~~~~~~~--------------------------------  182 (322)
                      ...++|+|+|.+|||||||+|+|++..+.  .++..+++++.......                                
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            35689999999999999999999998865  45666655442211000                                


Q ss_pred             ----eeCC---ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC
Q 020714          183 ----TKAD---TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP  255 (322)
Q Consensus       183 ----~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~  255 (322)
                          ...+   ..+.||||||+............ .....+...+..+|++++|+|++.....  .....++..+...  
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~-~f~~~~~~~l~~aD~il~VvDa~~~~~~--~~~~~~l~~l~~~--  217 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGY-DFPAVLRWFAERVDLIILLFDAHKLEIS--DEFSEAIGALRGH--  217 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCS-CHHHHHHHHHHHCSEEEEEEETTSCCCC--HHHHHHHHHTTTC--
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHh-hHHHHHHHHHHhCCEEEEEEeCCcCCCC--HHHHHHHHHHHhc--
Confidence                0000   36899999999752110000000 0011222345678999999999663222  2233455555433  


Q ss_pred             CCCcEEEEEeCCCCCCCh
Q 020714          256 PKQKRVLCMNKVDLVTKK  273 (322)
Q Consensus       256 ~~~p~ivV~NK~Dl~~~~  273 (322)
                       +.|+++|+||+|+....
T Consensus       218 -~~pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          218 -EDKIRVVLNKADMVETQ  234 (550)
T ss_dssp             -GGGEEEEEECGGGSCHH
T ss_pred             -CCCEEEEEECCCccCHH
Confidence             46799999999998653

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.43  E-value=4.6e-13  Score=122.67  Aligned_cols=127  Identities=15%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCC--------CcHHHHHHHHHHhccc
Q 020714          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT--------SPDSRVIRLIERMGKQ  253 (322)
Q Consensus       182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~--------~~~~~~~~~l~~~~~~  253 (322)
                      +...+..+.+|||+|+..+..            .....+..++++|+|+|+++...        ........++..+...
T Consensus       188 ~~~~~~~l~iwDt~GQe~~r~------------~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~  255 (353)
T 1cip_A          188 FTFKDLHFKMFDVGGQRSERK------------KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN  255 (353)
T ss_dssp             EEETTEEEEEEEECCSGGGGG------------GGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             EeeCCeeEEEEeCCCchhhhH------------HHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence            444577899999999975432            12245789999999999975311        1123455566665432


Q ss_pred             -CCCCCcEEEEEeCCCCCCCh----------------hHHHHHHH----HHhcC-----CCCCcEEEeecCCCCCHHHHH
Q 020714          254 -APPKQKRVLCMNKVDLVTKK----------------KDLLKVAE----QFKHL-----PGYERIFMTSGLKGAGLKALT  307 (322)
Q Consensus       254 -~~~~~p~ivV~NK~Dl~~~~----------------~~~~~~~~----~~~~~-----~~~~~~~~iSa~~g~gi~el~  307 (322)
                       ...+.|+++|+||+|+....                ...++...    .+...     .....+++|||++|.||+++|
T Consensus       256 ~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF  335 (353)
T 1cip_A          256 KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF  335 (353)
T ss_dssp             GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred             ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence             33568999999999985211                11111111    12222     122358999999999999999


Q ss_pred             HHHHHHhhhcCCc
Q 020714          308 QYLMEQFKDLGLK  320 (322)
Q Consensus       308 ~~i~~~l~~~~~~  320 (322)
                      +++.+.+....++
T Consensus       336 ~~v~~~i~~~~l~  348 (353)
T 1cip_A          336 DAVTDVIIKNNLK  348 (353)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.39  E-value=1.5e-12  Score=119.67  Aligned_cols=126  Identities=13%  Similarity=0.160  Sum_probs=77.5

Q ss_pred             EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC--------CCcHHHHHHHHHHhccc
Q 020714          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL--------TSPDSRVIRLIERMGKQ  253 (322)
Q Consensus       182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~--------~~~~~~~~~~l~~~~~~  253 (322)
                      +...+..+.+|||+|+..+...            ....+..++++|+|+|+++..        .........++..+...
T Consensus       196 ~~~~~~~l~i~Dt~Gq~~~r~~------------w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~  263 (362)
T 1zcb_A          196 FEIKNVPFKMVDVGGQRSERKR------------WFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN  263 (362)
T ss_dssp             EEETTEEEEEEEECC-------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             eeeCCeEEEEEeccchhhhhhh------------HHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence            3445778999999999754321            224568899999999997621        11122444555555432


Q ss_pred             -CCCCCcEEEEEeCCCCCCCh-----------------hHHHHHH----HHHhcCC-----CCCcEEEeecCCCCCHHHH
Q 020714          254 -APPKQKRVLCMNKVDLVTKK-----------------KDLLKVA----EQFKHLP-----GYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       254 -~~~~~p~ivV~NK~Dl~~~~-----------------~~~~~~~----~~~~~~~-----~~~~~~~iSa~~g~gi~el  306 (322)
                       ...+.|+|+|+||+|+....                 ...++..    ..|....     ....+++|||++|.||+++
T Consensus       264 ~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~v  343 (362)
T 1zcb_A          264 RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV  343 (362)
T ss_dssp             GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred             hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHH
Confidence             34568999999999985211                 1122211    1222211     1225789999999999999


Q ss_pred             HHHHHHHhhhcCC
Q 020714          307 TQYLMEQFKDLGL  319 (322)
Q Consensus       307 ~~~i~~~l~~~~~  319 (322)
                      |+++.+.+....+
T Consensus       344 F~~v~~~i~~~~l  356 (362)
T 1zcb_A          344 FRDVKDTILHDNL  356 (362)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876544

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.37  E-value=2.4e-13  Score=134.10  Aligned_cols=158  Identities=15%  Similarity=0.324  Sum_probs=106.5

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCC-----eeeeecCC------------CCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRK------------TNTTTHEVLGVMTKADTQICIFDTPGLMLNKS  202 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~-----~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~  202 (322)
                      -+|+|+|..++|||||..+|+..     +...+...            -|.|.......+.+.+..+.|+||||+.+|. 
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~-   81 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL-   81 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence            46899999999999999998621     11111100            1334443333355678899999999998762 


Q ss_pred             CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHH
Q 020714          203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVA  280 (322)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~  280 (322)
                                 ..+...++.+|++|+|+|+..+...+...+.......+      .|.++++||+|....+.  ...+..
T Consensus        82 -----------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~------lp~i~~INKmDr~~a~~~~~~~~i~  144 (638)
T 3j25_A           82 -----------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG------IPTIFFINKIDQNGIDLSTVYQDIK  144 (638)
T ss_dssp             -----------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHT------CSCEECCEECCSSSCCSHHHHHHHH
T ss_pred             -----------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC------CCeEEEEeccccccCCHHHHHHHHH
Confidence                       23334567789999999998887776666666666555      45899999999865421  111111


Q ss_pred             HH------------------------------------------------------------HhcCCCCCcEEEeecCCC
Q 020714          281 EQ------------------------------------------------------------FKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       281 ~~------------------------------------------------------------~~~~~~~~~~~~iSa~~g  300 (322)
                      ..                                                            +.. ....|++..||++|
T Consensus       145 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~Pv~~gSa~~~  223 (638)
T 3j25_A          145 EKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQN-CSLFPLYHGSAKSN  223 (638)
T ss_dssp             HTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHH-TSCCCCCCCCSTTC
T ss_pred             HHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcc-cccccccccccccC
Confidence            10                                                            111 12347889999999


Q ss_pred             CCHHHHHHHHHHHhhh
Q 020714          301 AGLKALTQYLMEQFKD  316 (322)
Q Consensus       301 ~gi~el~~~i~~~l~~  316 (322)
                      .|++.|++.|.+.+..
T Consensus       224 ~Gv~~LLd~i~~~~p~  239 (638)
T 3j25_A          224 IGIDNLIEVITNKFYS  239 (638)
T ss_dssp             CSHHHHHHHHHHSCCC
T ss_pred             CCchhHhhhhhccccC
Confidence            9999999999987653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.36  E-value=2.6e-13  Score=121.70  Aligned_cols=122  Identities=17%  Similarity=0.175  Sum_probs=84.4

Q ss_pred             CCCCceEEEccccCCCCCC-C--------------------CCCCCCCCCC----hhhHHHHHHhhCCeEEEeec-cccc
Q 020714           43 ENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQ----EPTWDEKYRERTDRIVFGEE-AQKG   96 (322)
Q Consensus        43 ~~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~----~~~w~~~~~~~~~~i~f~~~-~~~~   96 (322)
                      .+++|+++.+.|++.|.++ +                    ||+||.+.+.    .+.|.++|...++.+++.++ ++.+
T Consensus        84 ~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g  163 (307)
T 1t9h_A           84 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDS  163 (307)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTT
T ss_pred             HHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            4589999999999999988 4                    8999998754    68899999999999999888 6666


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCC-----
Q 020714           97 KLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-----  171 (322)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~-----  171 (322)
                      ...+++                                 ...+-.++++|++|||||||+|.|.+.....++...     
T Consensus       164 ~~~L~~---------------------------------~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~  210 (307)
T 1t9h_A          164 LADIIP---------------------------------HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGR  210 (307)
T ss_dssp             CTTTGG---------------------------------GGTTSEEEEEESHHHHHHHHHHHHCC---------------
T ss_pred             HHHHHh---------------------------------hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCC
Confidence            665511                                 012346899999999999999999986544333322     


Q ss_pred             --CceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714          172 --NTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       172 --~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~  201 (322)
                        ++|+....  ....  ...++||||+..+.
T Consensus       211 G~~tt~~~~~--~~~~--~g~v~dtpg~~~~~  238 (307)
T 1t9h_A          211 GKHTTRHVEL--IHTS--GGLVADTPGFSSLE  238 (307)
T ss_dssp             ----CCCCCE--EEET--TEEEESSCSCSSCC
T ss_pred             CcccccHHHH--hhcC--CEEEecCCCccccc
Confidence              34443322  1121  34899999997654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.34  E-value=3.1e-12  Score=115.63  Aligned_cols=126  Identities=13%  Similarity=0.120  Sum_probs=82.6

Q ss_pred             EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCC-------CCCCC-cHHHHHHHHHHhcc-
Q 020714          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH-------RHLTS-PDSRVIRLIERMGK-  252 (322)
Q Consensus       182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s-------~~~~~-~~~~~~~~l~~~~~-  252 (322)
                      +...+..+.+|||+|+..+..            .+...+..++++|+|+|++       +..+. .......++..+.. 
T Consensus       162 ~~~~~v~l~iwDtgGQe~~R~------------~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~  229 (327)
T 3ohm_A          162 FDLQSVIFRMVDVGGQRSERR------------KWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY  229 (327)
T ss_dssp             EEETTEEEEEEEECCSHHHHT------------TGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred             EEeeceeeEEEEcCCchhHHH------------HHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence            445678899999999864322            1224678999999999875       22122 12244455555543 


Q ss_pred             cCCCCCcEEEEEeCCCCCCCh-----------------hHHHHH----HHHHhcC-----CCCCcEEEeecCCCCCHHHH
Q 020714          253 QAPPKQKRVLCMNKVDLVTKK-----------------KDLLKV----AEQFKHL-----PGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       253 ~~~~~~p~ivV~NK~Dl~~~~-----------------~~~~~~----~~~~~~~-----~~~~~~~~iSa~~g~gi~el  306 (322)
                      ....+.|+++++||+|+....                 ...++.    ...+...     .++ .++++||+++.||+++
T Consensus       230 ~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~v  308 (327)
T 3ohm_A          230 PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFV  308 (327)
T ss_dssp             GGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHH
T ss_pred             hccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHH
Confidence            333568999999999985421                 112221    2222222     222 4688999999999999


Q ss_pred             HHHHHHHhhhcCCc
Q 020714          307 TQYLMEQFKDLGLK  320 (322)
Q Consensus       307 ~~~i~~~l~~~~~~  320 (322)
                      |+.+.+.+.+++++
T Consensus       309 F~~v~~~Il~~~l~  322 (327)
T 3ohm_A          309 FAAVKDTILQLNLK  322 (327)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhHH
Confidence            99999999887654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.34  E-value=1.1e-12  Score=132.93  Aligned_cols=116  Identities=20%  Similarity=0.226  Sum_probs=73.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeec---------------CCCCceeeeEEEEEee----------------C
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS---------------RKTNTTTHEVLGVMTK----------------A  185 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~----------------~  185 (322)
                      .+..+|+|+|.+|+|||||+|+|+...-....               ...+.|.......+..                .
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            35679999999999999999999864211111               1122232222111112                1


Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      +..+.||||||+..+..            .....+..+|++|+|+|+.++...+...+.....   .   .+.|+++|+|
T Consensus        97 ~~~i~liDTPG~~df~~------------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~---~---~~~p~ilviN  158 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSS------------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL---G---ERIKPVVVIN  158 (842)
T ss_dssp             EEEEEEECCCCCCSSCH------------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH---H---TTCEEEEEEE
T ss_pred             CceEEEEECcCchhhHH------------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH---H---cCCCeEEEEE
Confidence            56789999999986532            1223456789999999998776555433332222   1   2467999999


Q ss_pred             CCCCC
Q 020714          266 KVDLV  270 (322)
Q Consensus       266 K~Dl~  270 (322)
                      |+|+.
T Consensus       159 K~D~~  163 (842)
T 1n0u_A          159 KVDRA  163 (842)
T ss_dssp             CHHHH
T ss_pred             CCCcc
Confidence            99986

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.30  E-value=2.7e-12  Score=117.30  Aligned_cols=121  Identities=18%  Similarity=0.184  Sum_probs=83.8

Q ss_pred             CCCceEEEccccCCCCCC-C--------------------CCCCCCCCCC---hhhHHHHHHhhCCeEEEeec-cccchh
Q 020714           44 NDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQ---EPTWDEKYRERTDRIVFGEE-AQKGKL   98 (322)
Q Consensus        44 ~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~---~~~w~~~~~~~~~~i~f~~~-~~~~~~   98 (322)
                      .++|+++.+ +|+.|.++ +                    ||+||++++.   .+.|..+|...++.+++.++ ++.+..
T Consensus       129 anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~  207 (358)
T 2rcn_A          129 ANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLK  207 (358)
T ss_dssp             ECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHH
T ss_pred             hcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHH
Confidence            479999865 88888877 4                    8999998765   66899999999999999998 777766


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCee-eeecCCC---C--
Q 020714           99 RIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-AAVSRKT---N--  172 (322)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~-~~~~~~~---~--  172 (322)
                      .+.              ..    +               .+-.++|+|++|||||||+|.|.+... +..+...   |  
T Consensus       208 ~L~--------------~~----~---------------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g  254 (358)
T 2rcn_A          208 PLE--------------EA----L---------------TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG  254 (358)
T ss_dssp             HHH--------------HH----H---------------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred             HHH--------------Hh----c---------------CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence            661              00    0               134689999999999999999998654 4333221   2  


Q ss_pred             --ceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714          173 --TTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       173 --~t~~~~~~~~~~~~~~~~l~DtpG~~~~~  201 (322)
                        +|.......+.   ....++||||+..+.
T Consensus       255 ~~tt~~~~i~~v~---q~~~l~dtpgv~e~~  282 (358)
T 2rcn_A          255 QHTTTAARLYHFP---HGGDVIDSPGVREFG  282 (358)
T ss_dssp             ----CCCEEEECT---TSCEEEECHHHHTCC
T ss_pred             ccceEEEEEEEEC---CCCEecCcccHHHhh
Confidence              33333322221   233789999997653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.27  E-value=1.9e-11  Score=113.13  Aligned_cols=95  Identities=19%  Similarity=0.270  Sum_probs=70.4

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-----------------ccEEEEeCCCc
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGL  197 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~  197 (322)
                      ....+.+++++|.||||||||+|+|++...+.++..|++|.....+.+...+                 ..+.++|+||+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            3456789999999999999999999998766788889988887776655443                 35799999999


Q ss_pred             ccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (322)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~  234 (322)
                      .......  +.+.   ...+..+..+|.+++|+|+..
T Consensus        96 ~~~~s~~--e~L~---~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           96 TKGASTG--VGLG---NAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCCSS--SSSC---HHHHHHHTTCSEEEEEEECCC
T ss_pred             ccCCcHH--HHHH---HHHHHHHHHHHHHHHHHhccc
Confidence            7543321  1111   123345678899999999864

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.27  E-value=4.3e-11  Score=119.48  Aligned_cols=117  Identities=18%  Similarity=0.230  Sum_probs=73.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe-----eeee------------cCCCCceeeeEEEEEee-------CCccEEEEe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK-----VAAV------------SRKTNTTTHEVLGVMTK-------ADTQICIFD  193 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~-----~~~~------------~~~~~~t~~~~~~~~~~-------~~~~~~l~D  193 (322)
                      +.-+|+|+|...+|||||..+|+...     ...+            ...-|.|.......+.+       .+..+.|+|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            45689999999999999999986210     0001            11123333322222322       246789999


Q ss_pred             CCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       194 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      |||+.+|..            .....++.+|++|+|+|+..+...+...+.+.....+      .|.++++||+|....
T Consensus        92 TPGHvDF~~------------Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~------lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           92 TPGHVDFTI------------EVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYG------VPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCSCTTCHH------------HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHT------CCEEEEEECSSSTTC
T ss_pred             CCCCcccHH------------HHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcC------CCeEEEEccccccCc
Confidence            999987622            2223456679999999998876655555555444433      569999999998653

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.16  E-value=4.3e-11  Score=108.57  Aligned_cols=123  Identities=14%  Similarity=0.141  Sum_probs=79.0

Q ss_pred             EEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH-HHhhcccccEEEEEEeCCC-------C-CCCcHHHHHHHHHHhc
Q 020714          181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES-AWSAVNLFEVLMVVFDVHR-------H-LTSPDSRVIRLIERMG  251 (322)
Q Consensus       181 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~ad~ii~v~D~s~-------~-~~~~~~~~~~~l~~~~  251 (322)
                      .+...+..+.+|||+|+..             ++. +...+..++++|+|+|+++       . ..........++..+.
T Consensus       155 ~~~~~~v~l~iwDtaGQe~-------------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~  221 (340)
T 4fid_A          155 DFVVKDIPFHLIDVGGQRS-------------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIM  221 (340)
T ss_dssp             EEESSSCEEEEEECCSCHH-------------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHH
T ss_pred             EEEeeeeeeccccCCCccc-------------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHh
Confidence            3455678899999999863             222 2346799999999999972       1 1112223445555543


Q ss_pred             -ccCCCCCcEEEEEeCCCCCCChh----------------HHHH----HHHHH------hcCC---------------CC
Q 020714          252 -KQAPPKQKRVLCMNKVDLVTKKK----------------DLLK----VAEQF------KHLP---------------GY  289 (322)
Q Consensus       252 -~~~~~~~p~ivV~NK~Dl~~~~~----------------~~~~----~~~~~------~~~~---------------~~  289 (322)
                       .....+.|+++++||+|+.....                ..++    ....+      ....               ..
T Consensus       222 ~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (340)
T 4fid_A          222 TNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEK  301 (340)
T ss_dssp             HCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CE
T ss_pred             hhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcc
Confidence             23335789999999999863210                1111    22333      1111               11


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          290 ERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       290 ~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ..++++||+++.||+.+|+.+.+.+.+
T Consensus       302 iy~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          302 VYTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence            246899999999999999999998876

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.15  E-value=1.5e-10  Score=110.51  Aligned_cols=162  Identities=16%  Similarity=0.171  Sum_probs=93.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCce-----------e--eeEEEE----------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT-----------T--HEVLGV----------------  181 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t-----------~--~~~~~~----------------  181 (322)
                      ..+..|+++|.+||||||+++.|.      +.++..+...+...           .  -.....                
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            346789999999999999999998      66555443322100           0  000000                


Q ss_pred             EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcE-
Q 020714          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-  260 (322)
Q Consensus       182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~-  260 (322)
                      ....+.++.|+||||.....     ......+..... +..+|.+++|+|+..+..  ....   ...+...    .|+ 
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~-----~~l~~el~~~~~-~i~pd~vllVvDa~~g~~--~~~~---a~~~~~~----~~i~  243 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQE-----DSLFEEMLQVAN-AIQPDNIVYVMDASIGQA--CEAQ---AKAFKDK----VDVA  243 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTC-----HHHHHHHHHHHH-HHCCSEEEEEEETTCCTT--HHHH---HHHHHHH----HCCC
T ss_pred             HHHCCCcEEEEeCCCCcccc-----hhHHHHHHHHHh-hhcCceEEEEEecccccc--HHHH---HHHHHhh----cCce
Confidence            00156789999999986321     111122222222 226799999999976432  2222   2222211    244 


Q ss_pred             EEEEeCCCCCCChhHHHHHHHHHh-------------cCCCCCcEEEeecCCCCC-HHHHHHHHHHH
Q 020714          261 VLCMNKVDLVTKKKDLLKVAEQFK-------------HLPGYERIFMTSGLKGAG-LKALTQYLMEQ  313 (322)
Q Consensus       261 ivV~NK~Dl~~~~~~~~~~~~~~~-------------~~~~~~~~~~iSa~~g~g-i~el~~~i~~~  313 (322)
                      ++|+||+|..............+.             +...+.+.+++|+..|.| +++|++++.+.
T Consensus       244 gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          244 SVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             EEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            899999998754332222222221             111233456789999999 99999999876

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.13  E-value=1.4e-10  Score=104.20  Aligned_cols=121  Identities=17%  Similarity=0.221  Sum_probs=83.9

Q ss_pred             CCCCceEEEccccCCCCCC-C--------------------CCCCCCCCC---ChhhHHHHHHhhCCeEEEeec-cccch
Q 020714           43 ENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKK---QEPTWDEKYRERTDRIVFGEE-AQKGK   97 (322)
Q Consensus        43 ~~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~---~~~~w~~~~~~~~~~i~f~~~-~~~~~   97 (322)
                      ...+|.++.+.|++.|.++ +                    ||+|+.++.   ..+.|..++...+..+++.|+ ++.+.
T Consensus        77 ~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi  156 (302)
T 2yv5_A           77 VANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGI  156 (302)
T ss_dssp             EESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             HHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCH
Confidence            3479999999999988644 2                    899998765   267788989888888899998 88887


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCC-----
Q 020714           98 LRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-----  172 (322)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~-----  172 (322)
                      .++++              .                   ..+..++++|++|+|||||+|.|. ...+..+....     
T Consensus       157 ~~L~~--------------~-------------------l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G  202 (302)
T 2yv5_A          157 DELVD--------------Y-------------------LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERG  202 (302)
T ss_dssp             HHHHH--------------H-------------------TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-------
T ss_pred             HHHHh--------------h-------------------ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCC
Confidence            76610              0                   123458999999999999999998 65443333222     


Q ss_pred             --ceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          173 --TTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       173 --~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                        +|.....  ... ...-.++||||+..+
T Consensus       203 ~~~t~~~~~--~~~-~~~g~v~d~pg~~~~  229 (302)
T 2yv5_A          203 RHTTTGVRL--IPF-GKGSFVGDTPGFSKV  229 (302)
T ss_dssp             --CCCCEEE--EEE-TTTEEEESSCCCSSC
T ss_pred             CCceeeEEE--EEc-CCCcEEEECcCcCcC
Confidence              3333222  111 123489999998643

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.11  E-value=4.1e-11  Score=110.73  Aligned_cols=94  Identities=17%  Similarity=0.222  Sum_probs=53.5

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-----------------ccEEEEeCCCc
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGL  197 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~  197 (322)
                      ....+.+|+++|.||||||||+|+|++... .++..+++|.....+.+...+                 ..+.+|||||+
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl   96 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL   96 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence            445678999999999999999999999875 667778888776665544332                 24899999999


Q ss_pred             ccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714          198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (322)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~  234 (322)
                      ..+...     ........+..++.+|++++|+|+++
T Consensus        97 ~~~as~-----~~glg~~~l~~ir~aD~Il~VvD~~~  128 (396)
T 2ohf_A           97 VKGAHN-----GQGLGNAFLSHISACDGIFHLTRAFE  128 (396)
T ss_dssp             ---------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred             ccccch-----hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence            864321     00111234456788999999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.01  E-value=1.3e-09  Score=101.57  Aligned_cols=149  Identities=16%  Similarity=0.189  Sum_probs=75.7

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeee---ecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCC-Chh----hH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAA---VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGY-SHK----DV  209 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~-~~~----~~  209 (322)
                      ++++|+|++|+|||||+|.|.|..+..   ....++.+...........+  ..+.++|++|+....... ...    .+
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            459999999999999999999875321   11123444332222222222  267999999986431100 000    11


Q ss_pred             HHHHHHHHhhc----------ccc--c-EEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH
Q 020714          210 KVRVESAWSAV----------NLF--E-VLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL  276 (322)
Q Consensus       210 ~~~~~~~~~~~----------~~a--d-~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~  276 (322)
                      ...+...+...          ..+  | +++++.|..++.+..+.   ..++.+.    .++|+|+|+||+|.....+ .
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di---eilk~L~----~~~~vI~Vi~KtD~Lt~~E-~  194 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL---VTMKKLD----SKVNIIPIIAKADAISKSE-L  194 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH---HHHHHTC----SCSEEEEEESCGGGSCHHH-H
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH---HHHHHHh----hCCCEEEEEcchhccchHH-H
Confidence            22333333322          122  2 35566676555444443   3344443    2568999999999987533 2


Q ss_pred             HHHHHHHh---cCCCCCcEEEeec
Q 020714          277 LKVAEQFK---HLPGYERIFMTSG  297 (322)
Q Consensus       277 ~~~~~~~~---~~~~~~~~~~iSa  297 (322)
                      ......+.   ...+. +++.+|.
T Consensus       195 ~~l~~~I~~~L~~~gi-~I~~is~  217 (427)
T 2qag_B          195 TKFKIKITSELVSNGV-QIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHHHBTTBC-CCCCCC-
T ss_pred             HHHHHHHHHHHHHcCC-cEEecCC
Confidence            22222222   23444 4666664

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.98  E-value=3.5e-09  Score=94.99  Aligned_cols=105  Identities=22%  Similarity=0.241  Sum_probs=72.0

Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK  266 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK  266 (322)
                      ..+.+|||  +..+.....            ..+..+|++|+|+|++++.+.. ..+..|+..+...   ++|+++|+||
T Consensus        63 ~~~~iwD~--qer~~~l~~------------~~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~---~~piilv~NK  124 (301)
T 1u0l_A           63 GSGVIENV--LHRKNLLTK------------PHVANVDQVILVVTVKMPETST-YIIDKFLVLAEKN---ELETVMVINK  124 (301)
T ss_dssp             SSEEEEEE--CCCSCEETT------------TTEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHT---TCEEEEEECC
T ss_pred             CeEEEEEE--ccccceeec------------cccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHC---CCCEEEEEeH
Confidence            47899999  444332111            3578999999999998764322 3455666655432   5789999999


Q ss_pred             CCCCCChhH--HHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714          267 VDLVTKKKD--LLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       267 ~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~  312 (322)
                      +|+......  ..+....+...   .++++|||++|.|+++++.++..
T Consensus       125 ~DL~~~~~v~~~~~~~~~~~~~---~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          125 MDLYDEDDLRKVRELEEIYSGL---YPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             GGGCCHHHHHHHHHHHHHHTTT---SCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHcCCchhHHHHHHHHHHHhhh---CcEEEEECCCCcCHHHHHHHhcC
Confidence            999765332  22333333222   36999999999999999988754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.97  E-value=4.9e-10  Score=102.57  Aligned_cols=122  Identities=17%  Similarity=0.183  Sum_probs=76.8

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC-------C-CCCcHHHHHHHHHHhccc-CCC
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR-------H-LTSPDSRVIRLIERMGKQ-APP  256 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~-------~-~~~~~~~~~~~l~~~~~~-~~~  256 (322)
                      ...+.+|||+|+..+...            ....+..++++|+|+|++.       . .......+..++..+... ..+
T Consensus       182 ~v~l~iwDtaGQe~~r~~------------~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~  249 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNERRK------------WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  249 (354)
T ss_dssp             --EEEEEEECCSTTGGGG------------TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS
T ss_pred             ceeeEEEECCCchhhhHH------------HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC
Confidence            467899999999765331            1245789999999999961       1 122223455566665432 235


Q ss_pred             CCcEEEEEeCCCCCCChh----------------------HHHHHH----HHHhcC----------CCCCcEEEeecCCC
Q 020714          257 KQKRVLCMNKVDLVTKKK----------------------DLLKVA----EQFKHL----------PGYERIFMTSGLKG  300 (322)
Q Consensus       257 ~~p~ivV~NK~Dl~~~~~----------------------~~~~~~----~~~~~~----------~~~~~~~~iSa~~g  300 (322)
                      +.|+++|+||+|+.....                      ..++..    ..+...          .....+++|||++|
T Consensus       250 ~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~  329 (354)
T 2xtz_A          250 KTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ  329 (354)
T ss_dssp             SCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH
T ss_pred             CCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc
Confidence            789999999999842110                      111111    111111          11223689999999


Q ss_pred             CCHHHHHHHHHHHhhhcCC
Q 020714          301 AGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       301 ~gi~el~~~i~~~l~~~~~  319 (322)
                      .||+++|+++.+.+....+
T Consensus       330 ~nV~~vF~~v~~~I~~~~l  348 (354)
T 2xtz_A          330 KLVKKTFKLVDETLRRRNL  348 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            9999999999998876543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.96  E-value=1.4e-08  Score=94.49  Aligned_cols=164  Identities=18%  Similarity=0.220  Sum_probs=92.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecC----CCCceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR----KTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKV  211 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~  211 (322)
                      .....++++|++|+|||||+|.|.|...+..+.    ...+|+...  ..... ...+.++|+||+....     .....
T Consensus        67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~~-----~~~~~  139 (413)
T 1tq4_A           67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTN-----FPPDT  139 (413)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSS-----CCHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccchH-----HHHHH
Confidence            456689999999999999999999843221111    111222111  11111 2468999999986421     11112


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC-----------ChhHHHHHH
Q 020714          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT-----------KKKDLLKVA  280 (322)
Q Consensus       212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~-----------~~~~~~~~~  280 (322)
                      .+.. + .+...+..++ ++... ...+...+...+...      +.|+++|.||.|+.-           ......+..
T Consensus       140 ~L~~-~-~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l  209 (413)
T 1tq4_A          140 YLEK-M-KFYEYDFFII-ISATR-FKKNDIDIAKAISMM------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI  209 (413)
T ss_dssp             HHHH-T-TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHT------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred             HHHH-c-CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhc------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence            1211 1 1333355554 66632 122222444444432      357999999999751           112222333


Q ss_pred             HHHh-----cC-CCCCcEEEeec--CCCCCHHHHHHHHHHHhhhc
Q 020714          281 EQFK-----HL-PGYERIFMTSG--LKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       281 ~~~~-----~~-~~~~~~~~iSa--~~g~gi~el~~~i~~~l~~~  317 (322)
                      ..+.     +. .....++.+|+  .++.|++++.+.|.+.+.+.
T Consensus       210 ~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence            3332     22 22346899999  66777999999999988764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.91  E-value=1.2e-09  Score=101.18  Aligned_cols=124  Identities=13%  Similarity=0.134  Sum_probs=81.6

Q ss_pred             EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC--------CCCcHHHHHHHHHHhccc
Q 020714          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH--------LTSPDSRVIRLIERMGKQ  253 (322)
Q Consensus       182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~--------~~~~~~~~~~~l~~~~~~  253 (322)
                      +...+..+.+|||+|+..+..            .....+..++++|+|+|+++-        .......+..|+..+...
T Consensus       212 ~~~~~v~l~iwDtaGQe~~r~------------~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          212 FQVDKVNFHMFDVGGQRDERR------------KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             EEETTEEEEEEEECCSGGGGG------------GGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             eecCCccceecccchhhhhhh------------hhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            445678899999999976432            122457889999999999761        011223556677766543


Q ss_pred             -CCCCCcEEEEEeCCCCCCChh---H---------------------------HHHHHHH-----HhcC--------CCC
Q 020714          254 -APPKQKRVLCMNKVDLVTKKK---D---------------------------LLKVAEQ-----FKHL--------PGY  289 (322)
Q Consensus       254 -~~~~~p~ivV~NK~Dl~~~~~---~---------------------------~~~~~~~-----~~~~--------~~~  289 (322)
                       ..++.|+++|+||+|+.....   .                           ..+....     |...        ..+
T Consensus       280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~  359 (402)
T 1azs_C          280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC  359 (402)
T ss_dssp             TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred             ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence             346789999999999843111   0                           0111111     2221        122


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          290 ERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                       .+++|||+++.||+++|+++.+.+....
T Consensus       360 -~~~~TSA~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          360 -YPHFTCAVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             -EEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             -EEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence             3679999999999999999998887653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.90  E-value=1e-08  Score=90.41  Aligned_cols=128  Identities=15%  Similarity=0.266  Sum_probs=68.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeec-------CCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCC-hh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVS-------RKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYS-HK  207 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~-~~  207 (322)
                      .++++++|++|+|||||+|.|.+...+..+       ..+.+......+.....   ...++++|++|+........ ..
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            378999999999999999999875433222       11112211222221111   23679999999865332111 11


Q ss_pred             hHHH----HHHHHHh-----------hcccccEEEEEEeCC-CCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714          208 DVKV----RVESAWS-----------AVNLFEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (322)
Q Consensus       208 ~~~~----~~~~~~~-----------~~~~ad~ii~v~D~s-~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~  271 (322)
                      .+..    .+...+.           .+..+.+.++++|.. ++....+.   ..++.+...    .++|+|+||+|...
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~---~~l~~L~~~----~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL---EFMKHLSKV----VNIIPVIAKADTMT  154 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH---HHHHHHHTT----SEEEEEETTGGGSC
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH---HHHHHHHhc----CcEEEEEeccccCC
Confidence            1111    1111111           123458889999965 33333332   334444322    56999999999987


Q ss_pred             Ch
Q 020714          272 KK  273 (322)
Q Consensus       272 ~~  273 (322)
                      ..
T Consensus       155 ~~  156 (270)
T 3sop_A          155 LE  156 (270)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.90  E-value=2.3e-09  Score=96.19  Aligned_cols=122  Identities=21%  Similarity=0.176  Sum_probs=78.0

Q ss_pred             cCCCCceEEEccccCCCCCC-C--------------------CCCCCCCCCC---hhhHHHHHHhhCCeEEEeec-cccc
Q 020714           42 TENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQ---EPTWDEKYRERTDRIVFGEE-AQKG   96 (322)
Q Consensus        42 ~~~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~---~~~w~~~~~~~~~~i~f~~~-~~~~   96 (322)
                      +...+|+++-+.|++.|.++ +                    ||+||.+...   .+.|...+... ..++..|+ ++.+
T Consensus        81 ~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~g  159 (301)
T 1u0l_A           81 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMG  159 (301)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTT
T ss_pred             ccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcC
Confidence            34479999999999887643 2                    8999876543   45677776655 66777887 7777


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCC-----
Q 020714           97 KLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-----  171 (322)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~-----  171 (322)
                      ..+++..                                 ..+-.++++|++|+|||||+|.|.+...+..+...     
T Consensus       160 v~~lf~~---------------------------------l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~  206 (301)
T 1u0l_A          160 IEELKEY---------------------------------LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQR  206 (301)
T ss_dssp             HHHHHHH---------------------------------HSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------
T ss_pred             HHHHHHH---------------------------------hcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCC
Confidence            7666111                                 01335889999999999999999986544433222     


Q ss_pred             --CceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714          172 --NTTTHEVLGVMTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       172 --~~t~~~~~~~~~~~~~~~~l~DtpG~~~~  200 (322)
                        ++|.....  ... .....++|+||+...
T Consensus       207 g~~~t~~~~~--~~~-~~~g~v~q~p~~~~~  234 (301)
T 1u0l_A          207 GRHTTTTAQL--LKF-DFGGYVVDTPGFANL  234 (301)
T ss_dssp             ---CCCSCCE--EEC-TTSCEEESSCSSTTC
T ss_pred             CCCceeeeEE--EEc-CCCCEEEECcCCCcc
Confidence              23332221  111 123489999998644

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.89  E-value=2.6e-09  Score=103.57  Aligned_cols=63  Identities=29%  Similarity=0.369  Sum_probs=43.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEE-------eeCCccEEEEeCCCcccCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM-------TKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~l~DtpG~~~~~  201 (322)
                      ....+|+|+|.||||||||+|+|++.....  ..+++|.+.+.+.+       ...+..+.|+||||+....
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~  105 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE  105 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence            456889999999999999999999976431  23333333222222       1246789999999997543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.85  E-value=5.5e-10  Score=104.89  Aligned_cols=161  Identities=17%  Similarity=0.193  Sum_probs=88.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCC------------------------ceeeeE----EEEEee
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTN------------------------TTTHEV----LGVMTK  184 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~------------------------~t~~~~----~~~~~~  184 (322)
                      +..|+++|.+||||||+++.|..      .++..+...+.                        ++.+..    ......
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            46799999999999999998864      23332221110                        222110    000001


Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCC-c-EEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ-K-RVL  262 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~-p-~iv  262 (322)
                      .+.++.|+||||....     .......+. .+..+..+|.+++|+|+..+.   +  .......+..    .. | ..+
T Consensus       179 ~~~D~vIIDT~G~~~~-----~~~l~~~l~-~i~~~~~~d~vllVvda~~g~---~--~~~~~~~~~~----~~~~i~gv  243 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKE-----EKGLLEEMK-QIKEITNPDEIILVIDGTIGQ---Q--AGIQAKAFKE----AVGEIGSI  243 (432)
T ss_dssp             SSCSEEEEECCCSCSS-----HHHHHHHHH-HTTSSSCCSEEEEEEEGGGGG---G--HHHHHHHHHT----TSCSCEEE
T ss_pred             hCCCEEEEcCCCCccc-----cHHHHHHHH-HHHHHhcCcceeEEeeccccH---H--HHHHHHHHhh----cccCCeEE
Confidence            4678999999998631     111112222 233445789999999986532   2  2233344432    13 3 789


Q ss_pred             EEeCCCCCCChhHHHHHHHHHh-------------cCCCCCcEEEeecCCCCC-HHHHHHHHHHHh
Q 020714          263 CMNKVDLVTKKKDLLKVAEQFK-------------HLPGYERIFMTSGLKGAG-LKALTQYLMEQF  314 (322)
Q Consensus       263 V~NK~Dl~~~~~~~~~~~~~~~-------------~~~~~~~~~~iSa~~g~g-i~el~~~i~~~l  314 (322)
                      |+||+|..............+.             +...+.+..++|+..|.| +..|++.+.+.+
T Consensus       244 VlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~  309 (432)
T 2v3c_C          244 IVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV  309 (432)
T ss_dssp             EEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred             EEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            9999998654332222222211             111222344567777777 776666665443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.73  E-value=1.1e-07  Score=89.03  Aligned_cols=148  Identities=18%  Similarity=0.173  Sum_probs=83.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCC----------------ceeeeEEE-------------EE
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTN----------------TTTHEVLG-------------VM  182 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~----------------~t~~~~~~-------------~~  182 (322)
                      .+..|+++|.+||||||+++.|.      +.++..+...+.                ........             ..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            46789999999999999998886      344433222111                10000000             00


Q ss_pred             eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEE
Q 020714          183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL  262 (322)
Q Consensus       183 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~iv  262 (322)
                      ...+.++.|+||||.....     ......+... .....+|.+++|+|+..+   ++  .......+....   .+..+
T Consensus       179 ~~~~~DvVIIDTaGrl~~d-----~~lm~el~~i-~~~~~pd~vlLVvDA~~g---q~--a~~~a~~f~~~~---~i~gV  244 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKED-----KALIEEMKQI-SNVIHPHEVILVIDGTIG---QQ--AYNQALAFKEAT---PIGSI  244 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCC-----HHHHHHHHHH-HHHHCCSEEEEEEEGGGG---GG--HHHHHHHHHHSC---TTEEE
T ss_pred             HhCCCCEEEEECCCcccch-----HHHHHHHHHH-HHhhcCceEEEEEeCCCc---hh--HHHHHHHHHhhC---CCeEE
Confidence            0134789999999975321     2222223222 233457899999999653   22  122334443221   23679


Q ss_pred             EEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      |+||+|..........    +....+. |+.+++.  |+++++|
T Consensus       245 IlTKlD~~~~gG~~ls----~~~~~g~-PI~fig~--Ge~vddL  281 (443)
T 3dm5_A          245 IVTKLDGSAKGGGALS----AVAATGA-PIKFIGT--GEKIDDI  281 (443)
T ss_dssp             EEECCSSCSSHHHHHH----HHHTTCC-CEEEEEC--SSSTTCE
T ss_pred             EEECCCCcccccHHHH----HHHHHCC-CEEEEEc--CCChHHh
Confidence            9999999765443322    2223455 5888885  8877654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.72  E-value=5.8e-08  Score=86.12  Aligned_cols=94  Identities=16%  Similarity=0.296  Sum_probs=70.9

Q ss_pred             HHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCC
Q 020714          211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE  290 (322)
Q Consensus       211 ~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~  290 (322)
                      ...++.+..+..+|++++|+|+..+.+.....+..++        .++|.++|+||+|+.+. ...+.+.+.+.. .+. 
T Consensus        12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~-~~~~~~~~~~~~-~g~-   80 (282)
T 1puj_A           12 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA-AVTQQWKEHFEN-QGI-   80 (282)
T ss_dssp             HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH-HHHHHHHHHHHT-TTC-
T ss_pred             HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH-HHHHHHHHHHHh-cCC-
Confidence            3567777889999999999999887766543343333        25789999999999873 334444555543 344 


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +++++||++|.|++++++.+.+.+.
T Consensus        81 ~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           81 RSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             cEEEEECCCcccHHHHHHHHHHHHH
Confidence            6999999999999999999888775

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.67  E-value=4.2e-08  Score=87.91  Aligned_cols=88  Identities=19%  Similarity=0.317  Sum_probs=61.8

Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-H-HHHHHHHHhcCCCCCcEEEee
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-D-LLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      .+.++|++++|+|++++.... ..+..|+..+...   ++|+++|+||+|+.+... . ..+....+.. .+. +++++|
T Consensus        76 ~~~naD~vliV~d~~~p~~s~-~~l~~~l~~~~~~---~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~-~g~-~~~~~S  149 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNN-YLLDNMLVVYEYF---KVEPVIVFNKIDLLNEEEKKELERWISIYRD-AGY-DVLKVS  149 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCH-HHHHHHHHHHHHT---TCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-TTC-EEEECC
T ss_pred             HHHhcCEEEEEEECCCCCCCH-HHHHHHHHHHHhC---CCCEEEEEEcccCCCccccHHHHHHHHHHHH-CCC-eEEEEE
Confidence            578999999999997654232 3455666655443   578999999999986532 1 2333333333 355 699999


Q ss_pred             cCCCCCHHHHHHHHHH
Q 020714          297 GLKGAGLKALTQYLME  312 (322)
Q Consensus       297 a~~g~gi~el~~~i~~  312 (322)
                      |++|.|+++|++.+..
T Consensus       150 A~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          150 AKTGEGIDELVDYLEG  165 (302)
T ss_dssp             TTTCTTHHHHHHHTTT
T ss_pred             CCCCCCHHHHHhhccC
Confidence            9999999999988753

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.55  E-value=1.3e-07  Score=87.08  Aligned_cols=96  Identities=17%  Similarity=0.200  Sum_probs=65.0

Q ss_pred             HHHHHHhhc-ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh---hHHHHHHHHHhcCC
Q 020714          212 RVESAWSAV-NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLKVAEQFKHLP  287 (322)
Q Consensus       212 ~~~~~~~~~-~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~---~~~~~~~~~~~~~~  287 (322)
                      .|.+.+..+ ..++++++|+|+++......    ..+..+-    .+.|+++|+||+|+.+..   ....++........
T Consensus        60 ~f~~~L~~~~~~~~lil~VvD~~d~~~s~~----~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~  131 (369)
T 3ec1_A           60 DFLSMLHRIGESKALVVNIVDIFDFNGSFI----PGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL  131 (369)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEETTCSGGGCC----SSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhccCcEEEEEEECCCCCCchh----hHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence            355666655 67789999999976442221    2222221    256899999999998653   23334444434444


Q ss_pred             CC--CcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          288 GY--ERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       288 ~~--~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +.  .+++.+||++|.|++++++.|.+...
T Consensus       132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          132 GLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             TCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            54  36899999999999999999987654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.53  E-value=3.8e-07  Score=85.31  Aligned_cols=148  Identities=18%  Similarity=0.222  Sum_probs=79.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHh------CCeeeeecCC----------------CCceeeeEE-----------EE--E
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRK----------------TNTTTHEVL-----------GV--M  182 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~----------------~~~t~~~~~-----------~~--~  182 (322)
                      .+..|+++|++|+||||++..|.      +.++..+...                .+.......           ..  .
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            46788999999999999998886      3333221111                111000000           00  0


Q ss_pred             eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEE
Q 020714          183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL  262 (322)
Q Consensus       183 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~iv  262 (322)
                      ...+.++.|+||||...+..  . ......+....... ..+.+++|+|+..+.  ...   .....+....   .+..+
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~--d-~~lm~el~~i~~~~-~pd~vlLVlDa~~gq--~a~---~~a~~f~~~~---~~~gV  243 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGE--E-TKLLEEMKEMYDVL-KPDDVILVIDASIGQ--KAY---DLASRFHQAS---PIGSV  243 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCC--T-THHHHHHHHHHHHH-CCSEEEEEEEGGGGG--GGH---HHHHHHHHHC---SSEEE
T ss_pred             HhcCCCEEEEECCCCccccC--C-HHHHHHHHHHHHhh-CCcceEEEEeCccch--HHH---HHHHHHhccc---CCcEE
Confidence            01257899999999753111  1 11222233322222 458999999996531  112   2223333221   23789


Q ss_pred             EEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHH
Q 020714          263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLK  304 (322)
Q Consensus       263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~  304 (322)
                      |+||+|..............    .+. |+.+++.  |++++
T Consensus       244 IlTKlD~~a~~G~als~~~~----~g~-Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          244 IITKMDGTAKGGGALSAVVA----TGA-TIKFIGT--GEKID  278 (433)
T ss_dssp             EEECGGGCSCHHHHHHHHHH----HTC-EEEEEEC--CSSSS
T ss_pred             EEecccccccchHHHHHHHH----HCC-CEEEEEC--CCChH
Confidence            99999987554433332332    233 6888885  87764

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.52  E-value=2.1e-07  Score=85.65  Aligned_cols=96  Identities=18%  Similarity=0.207  Sum_probs=63.9

Q ss_pred             HHHHHHhhc-ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcCC
Q 020714          212 RVESAWSAV-NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLP  287 (322)
Q Consensus       212 ~~~~~~~~~-~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~~  287 (322)
                      .|.+.+..+ ..++++++|+|+++    .+..+...+..+.    .+.|+++|+||+|+.+...   ...++........
T Consensus        58 ~f~~~l~~i~~~~~~il~VvD~~d----~~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~  129 (368)
T 3h2y_A           58 DFLRILNGIGKSDALVVKIVDIFD----FNGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL  129 (368)
T ss_dssp             HHHHHHHHHHHSCCEEEEEEETTS----HHHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCcEEEEEEECCC----CcccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence            455555554 45679999999964    2333333344432    2578999999999976532   2333333333334


Q ss_pred             CC--CcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          288 GY--ERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       288 ~~--~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +.  .+++++||++|.|++++++.|.+...
T Consensus       130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~  159 (368)
T 3h2y_A          130 GLKPEDVFLISAAKGQGIAELADAIEYYRG  159 (368)
T ss_dssp             TCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence            44  26899999999999999999987653

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.52  E-value=4.1e-07  Score=76.19  Aligned_cols=104  Identities=9%  Similarity=0.032  Sum_probs=62.4

Q ss_pred             HHHHHh-hcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccC-CCCCcEEEEEeCC-CCCCChhHHHHHHHHHh--cC
Q 020714          213 VESAWS-AVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQA-PPKQKRVLCMNKV-DLVTKKKDLLKVAEQFK--HL  286 (322)
Q Consensus       213 ~~~~~~-~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~-~~~~p~ivV~NK~-Dl~~~~~~~~~~~~~~~--~~  286 (322)
                      ++..|. ++..+|++|||+|.++.....-. ++..+...+.... ..+.|++|.+||. |+...-. ..++.+.+.  ..
T Consensus       115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams-~~EI~e~L~L~~l  193 (227)
T 3l82_B          115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-CFYLAHELHLNLL  193 (227)
T ss_dssp             --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC-HHHHHHHTTGGGG
T ss_pred             HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC-HHHHHHHcCCcCC
Confidence            444443 45788999999999876433211 2211122222221 2568999999995 7754322 122222211  11


Q ss_pred             CCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ...-.+..|||++|+|+.+-++||.+.+..+
T Consensus       194 ~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          194 NHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            1112589999999999999999999887654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.36  E-value=3.8e-06  Score=82.31  Aligned_cols=82  Identities=15%  Similarity=0.310  Sum_probs=42.6

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh-cc-cccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA-VN-LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~-~~-~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ...+.++|.||+...............+...+.. +. ...+++++++.......  .....++..+...   +.+.|+|
T Consensus       146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~--~~~l~la~~v~~~---g~rtI~V  220 (608)
T 3szr_A          146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT--TEALSMAQEVDPE---GDRTIGI  220 (608)
T ss_dssp             SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT--CHHHHHHHHHCSS---CCSEEEE
T ss_pred             CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc--HHHHHHHHHHhhc---CCceEEE
Confidence            3568999999986532211112223334444444 23 33556666654332222  2344566666543   4569999


Q ss_pred             EeCCCCCCC
Q 020714          264 MNKVDLVTK  272 (322)
Q Consensus       264 ~NK~Dl~~~  272 (322)
                      +||.|+...
T Consensus       221 lTK~Dlv~~  229 (608)
T 3szr_A          221 LTKPDLVDK  229 (608)
T ss_dssp             EECGGGSSS
T ss_pred             ecchhhcCc
Confidence            999999854

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.28  E-value=2.4e-06  Score=76.19  Aligned_cols=149  Identities=17%  Similarity=0.185  Sum_probs=80.6

Q ss_pred             ceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCce--------------eeeEEE-------------E--Ee
Q 020714          139 SVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT--------------THEVLG-------------V--MT  183 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t--------------~~~~~~-------------~--~~  183 (322)
                      +..++++|.+|+||||+++.|.      +.++..+...+...              ......             .  ..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            5678899999999999998876      33333222221100              000000             0  00


Q ss_pred             eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEE
Q 020714          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVL  262 (322)
Q Consensus       184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~iv  262 (322)
                      ..+.++.|+||||.....   ........+.. +.....+|.+++|+|+..+   .+  .....+.+...    .+ ..+
T Consensus       178 ~~~~D~ViIDTpg~~~~~---~~~~l~~el~~-i~~~~~~d~vllVvda~~g---~~--~~~~~~~~~~~----~~i~gv  244 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYG---EEAALLEEMKN-IYEAIKPDEVTLVIDASIG---QK--AYDLASKFNQA----SKIGTI  244 (297)
T ss_dssp             HTTCSEEEEECCCSCCTT---CHHHHHHHHHH-HHHHHCCSEEEEEEEGGGG---GG--HHHHHHHHHHT----CTTEEE
T ss_pred             hCCCCEEEEeCCCCcccc---cHHHHHHHHHH-HHHHhcCCEEEEEeeCCch---HH--HHHHHHHHHhh----CCCCEE
Confidence            146689999999986310   01111111111 1223467999999998532   21  22233333321    23 678


Q ss_pred             EEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHH
Q 020714          263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT  307 (322)
Q Consensus       263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~  307 (322)
                      |+||+|.........    .+....+. |+.+++  +|++++++.
T Consensus       245 Vlnk~D~~~~~g~~~----~~~~~~~~-pi~~i~--~Ge~v~dl~  282 (297)
T 1j8m_F          245 IITKMDGTAKGGGAL----SAVAATGA-TIKFIG--TGEKIDELE  282 (297)
T ss_dssp             EEECGGGCTTHHHHH----HHHHTTTC-CEEEEE--CSSSTTCEE
T ss_pred             EEeCCCCCcchHHHH----HHHHHHCc-CEEEEe--CCCChhhcc
Confidence            999999865433222    23334454 577877  788887654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.22  E-value=4.5e-07  Score=79.46  Aligned_cols=88  Identities=19%  Similarity=0.258  Sum_probs=63.1

Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCc
Q 020714          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER  291 (322)
Q Consensus       212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  291 (322)
                      .++..+..+..+|++++|+|+..+.+.....+. ++         ++|.++|+||+|+.+. ...+.+.+.+.. .+. +
T Consensus        11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~-~~~~~~~~~~~~-~g~-~   77 (262)
T 3cnl_A           11 AKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADE-KTTKKWVEFFKK-QGK-R   77 (262)
T ss_dssp             TTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCH-HHHHHHHHHHHH-TTC-C
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCH-HHHHHHHHHHHH-cCC-e
Confidence            345666778999999999999877655432221 11         5789999999999874 334445555544 244 4


Q ss_pred             EEEeecCCCCCHHHHHHHHHHH
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQ  313 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~  313 (322)
                      + ++||++|.|+++|+++|...
T Consensus        78 v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           78 V-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             E-EECCTTSCHHHHHHHHCCCT
T ss_pred             E-EEECCCCcCHHHHHHHHHHh
Confidence            7 99999999999999887543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.22  E-value=2.2e-06  Score=75.25  Aligned_cols=98  Identities=8%  Similarity=0.035  Sum_probs=60.1

Q ss_pred             hcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccC-CCCCcEEEEEeC-CCCCCChhHHHHHHHHHh--cCCCCCcEE
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQA-PPKQKRVLCMNK-VDLVTKKKDLLKVAEQFK--HLPGYERIF  293 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~-~~~~p~ivV~NK-~Dl~~~~~~~~~~~~~~~--~~~~~~~~~  293 (322)
                      ++..+|++|+|+|.+++...... ++.++...+.... ..+.|++|.+|| .|+...-. ..++.+.+.  .....-.+.
T Consensus       207 Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams-~~EI~e~L~L~~l~r~W~Iq  285 (312)
T 3l2o_B          207 VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-CFYLAHELHLNLLNHPWLVQ  285 (312)
T ss_dssp             HHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC-HHHHHHHTTGGGGCSCEEEE
T ss_pred             HhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC-HHHHHHHcCCccCCCcEEEE
Confidence            45778999999999876544322 2221112222111 236789999997 58865422 112222211  111112489


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhc
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      .|||.+|+|+.|-++||.+.+..+
T Consensus       286 ~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          286 DTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             EEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             ecccCCCcCHHHHHHHHHHHHHhh
Confidence            999999999999999999988654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.15  E-value=8.5e-06  Score=72.85  Aligned_cols=152  Identities=18%  Similarity=0.214  Sum_probs=77.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCc-e---------eeeEEEEEe------------------
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT-T---------THEVLGVMT------------------  183 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~-t---------~~~~~~~~~------------------  183 (322)
                      .+-.++++|++|+||||+++.|.+      +++...+..... .         ......++.                  
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            456899999999999999998863      222211111100 0         000000010                  


Q ss_pred             -eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH--hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcE
Q 020714          184 -KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW--SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR  260 (322)
Q Consensus       184 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~--~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~  260 (322)
                       ..+..+.++||+|......... .... ..+.++  ......+.+++++|+..+   .+  +...+..+.....   ..
T Consensus       181 ~~~~~d~~llDt~G~~~~~~~~~-~eLs-~~r~~iaRal~~~P~~~lLvLDa~t~---~~--~~~~~~~~~~~~~---~t  250 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTKHNLM-EELK-KVKRAIAKADPEEPKEVWLVLDAVTG---QN--GLEQAKKFHEAVG---LT  250 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHH-HHHH-HHHHHHHHHCTTCCSEEEEEEETTBC---TH--HHHHHHHHHHHHC---CS
T ss_pred             HhCCCCEEEecCCCCCCchHHHH-HHHH-HHHHHHHHhhcCCCCeEEEEEcHHHH---HH--HHHHHHHHHHHcC---Cc
Confidence             1234678999999853221111 1111 111111  123456778889998543   11  2233333332111   25


Q ss_pred             EEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          261 VLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       261 ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      ++++||.|..............+    +. |+.+++  +|+++++|
T Consensus       251 ~iivTh~d~~a~gg~~l~i~~~~----~~-pi~~ig--~Ge~~~dl  289 (304)
T 1rj9_A          251 GVIVTKLDGTAKGGVLIPIVRTL----KV-PIKFVG--VGEGPDDL  289 (304)
T ss_dssp             EEEEECTTSSCCCTTHHHHHHHH----CC-CEEEEE--CSSSTTCE
T ss_pred             EEEEECCcccccccHHHHHHHHH----CC-CeEEEe--CCCChhhc
Confidence            89999999764433333333332    33 577777  67766654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.11  E-value=4.5e-06  Score=75.40  Aligned_cols=149  Identities=13%  Similarity=0.185  Sum_probs=80.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC------eeeeecCCC----------------CceeeeEEEEE------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT------KVAAVSRKT----------------NTTTHEVLGVM------------  182 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~------~~~~~~~~~----------------~~t~~~~~~~~------------  182 (322)
                      ..+-.++++|++|+||||+++.|.+.      ++...+...                +.....+....            
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            45778999999999999999988742      221111110                00000000000            


Q ss_pred             -eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE
Q 020714          183 -TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV  261 (322)
Q Consensus       183 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i  261 (322)
                       ...+..+.++||+|......... ..+ ..+.++    -..|-.++++|...+   +  .....+..+.....   ..+
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~l~-~eL-~~i~ra----l~~de~llvLDa~t~---~--~~~~~~~~~~~~~~---it~  272 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRNLM-DEM-KKIARV----TKPNLVIFVGDALAG---N--AIVEQARQFNEAVK---IDG  272 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTCHH-HHH-HHHHHH----HCCSEEEEEEEGGGT---T--HHHHHHHHHHHHSC---CCE
T ss_pred             HHhccchhhHHhhccchhHHHHHH-HHH-HHHHHH----hcCCCCEEEEecHHH---H--HHHHHHHHHHHhcC---CCE
Confidence             01245678999999864322111 111 112222    235888999998543   2  23344444432211   258


Q ss_pred             EEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       262 vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      +++||.|...............    +. |+.+++  +|++++++
T Consensus       273 iilTKlD~~a~~G~~l~~~~~~----~~-pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          273 IILTKLDADARGGAALSISYVI----DA-PILFVG--VGQGYDDL  310 (328)
T ss_dssp             EEEECGGGCSCCHHHHHHHHHH----TC-CEEEEE--CSSSTTCE
T ss_pred             EEEeCcCCccchhHHHHHHHHH----CC-CEEEEe--CCCCcccc
Confidence            9999999754434433333332    33 688888  88888654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.08  E-value=3.6e-05  Score=72.81  Aligned_cols=150  Identities=17%  Similarity=0.257  Sum_probs=78.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCce-------e---eeEEEEEe-----------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT-------T---HEVLGVMT-----------------  183 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t-------~---~~~~~~~~-----------------  183 (322)
                      ..+-.++|+|.+|+|||||++.|.+      +.+...+......       .   .....++.                 
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~  370 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA  370 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence            4566899999999999999998864      2222211111100       0   00000110                 


Q ss_pred             --eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc-----ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCC
Q 020714          184 --KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV-----NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP  256 (322)
Q Consensus       184 --~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~  256 (322)
                        ..+.++.|+||+|.....     ......+......+     ...+-+++|+|+..+   ++  ....++.+..... 
T Consensus       371 a~~~~~DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG---q~--al~~ak~f~~~~~-  439 (503)
T 2yhs_A          371 AKARNIDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG---QN--AVSQAKLFHEAVG-  439 (503)
T ss_dssp             HHHTTCSEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT---HH--HHHHHHHHHHHTC-
T ss_pred             HHhcCCCEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc---HH--HHHHHHHHHhhcC-
Confidence              134678999999985321     11111111111111     224678889998543   22  2233344432211 


Q ss_pred             CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       257 ~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                        ...+|+||.|..........+...+    +. ++.++.  +|+++++|
T Consensus       440 --itgvIlTKLD~takgG~~lsi~~~~----~~-PI~fig--~Ge~vdDL  480 (503)
T 2yhs_A          440 --LTGITLTKLDGTAKGGVIFSVADQF----GI-PIRYIG--VGERIEDL  480 (503)
T ss_dssp             --CSEEEEECGGGCSCCTHHHHHHHHH----CC-CEEEEE--CSSSGGGE
T ss_pred             --CCEEEEEcCCCcccccHHHHHHHHH----CC-CEEEEe--cCCChhhc
Confidence              1578999999754434444433333    33 577766  77777664

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.98  E-value=3.6e-05  Score=72.12  Aligned_cols=121  Identities=16%  Similarity=0.102  Sum_probs=66.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHh-------CCeeeeecCCCCcee--------------eeEE-------------E--E
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMV-------GTKVAAVSRKTNTTT--------------HEVL-------------G--V  181 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~-------~~~~~~~~~~~~~t~--------------~~~~-------------~--~  181 (322)
                      .+..|+++|.+||||||++..|.       +.++..+...+....              +...             .  .
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~  178 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE  178 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence            45678899999999999998876       545443332221100              0000             0  0


Q ss_pred             EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-E
Q 020714          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-R  260 (322)
Q Consensus       182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~  260 (322)
                      ....+.++.|+||||.....     ......+.. ...+..++.+++|+|+..+   .+  .......+...    .+ .
T Consensus       179 ~~~~~~D~VIIDTpG~l~~~-----~~l~~~L~~-~~~~~~p~~vllVvda~~g---~~--~~~~~~~f~~~----l~i~  243 (433)
T 2xxa_A          179 AKLKFYDVLLVDTAGRLHVD-----EAMMDEIKQ-VHASINPVETLFVVDAMTG---QD--AANTAKAFNEA----LPLT  243 (433)
T ss_dssp             HHHTTCSEEEEECCCCCTTC-----HHHHHHHHH-HHHHSCCSEEEEEEETTBC---TT--HHHHHHHHHHH----SCCC
T ss_pred             HHhCCCCEEEEECCCccccc-----HHHHHHHHH-HHHhhcCcceeEEeecchh---HH--HHHHHHHHhcc----CCCe
Confidence            01146789999999975321     111111221 1234467899999998643   12  12223333321    22 3


Q ss_pred             EEEEeCCCCCCCh
Q 020714          261 VLCMNKVDLVTKK  273 (322)
Q Consensus       261 ivV~NK~Dl~~~~  273 (322)
                      -+|+||+|.....
T Consensus       244 gvVlnK~D~~~~~  256 (433)
T 2xxa_A          244 GVVLTKVDGDARG  256 (433)
T ss_dssp             CEEEECTTSSSCC
T ss_pred             EEEEecCCCCccH
Confidence            4799999986443

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.98  E-value=9e-06  Score=76.26  Aligned_cols=63  Identities=24%  Similarity=0.387  Sum_probs=41.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC---------------eeeeecCCCCceeeeEEEEEeeC-----------CccEE
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT---------------KVAAVSRKTNTTTHEVLGVMTKA-----------DTQIC  190 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~---------------~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~  190 (322)
                      .+...|+|+|.+++|||||+|.|++.               .....+. .+++...+.+++...           ...+.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~-~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv  143 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSW-RGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCS-CCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecC-CCCCCCceeEEEEecCccccccCCCCcceEE
Confidence            34567899999999999999999863               1111111 124444444543332           24689


Q ss_pred             EEeCCCcccC
Q 020714          191 IFDTPGLMLN  200 (322)
Q Consensus       191 l~DtpG~~~~  200 (322)
                      ++||||+...
T Consensus       144 llDTeG~~~~  153 (447)
T 3q5d_A          144 LMDTQGTFDS  153 (447)
T ss_dssp             EEEEECCCSS
T ss_pred             EEcCCccccc
Confidence            9999998643

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.83  E-value=0.00026  Score=63.63  Aligned_cols=150  Identities=18%  Similarity=0.223  Sum_probs=76.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCc--------ee-----eeEEEEE---------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT--------TT-----HEVLGVM---------------  182 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~--------t~-----~~~~~~~---------------  182 (322)
                      ..+-.++++|++|+||||++..|.+      .++......+..        ..     .....++               
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~  182 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD  182 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence            3456789999999999999887652      232222111100        00     0001111               


Q ss_pred             -----eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh-----cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc
Q 020714          183 -----TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA-----VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK  252 (322)
Q Consensus       183 -----~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~-----~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~  252 (322)
                           ...+.++.|+||||.....     ......+......     -..+|.+++|+|+..+    ...+ ...+.+..
T Consensus       183 ~l~~~~~~~yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~----~~~l-~~~~~~~~  252 (320)
T 1zu4_A          183 AIKKAKEQNYDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG----QNGV-IQAEEFSK  252 (320)
T ss_dssp             HHHHHHHTTCSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT----HHHH-HHHHHHTT
T ss_pred             HHHHHHhcCCCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc----HHHH-HHHHHHhh
Confidence                 0135789999999976310     1111111111111     1347899999998531    2222 22334432


Q ss_pred             cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       253 ~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      .   -...-+|+||.|..............+    +. |+.+++  .|++++++
T Consensus       253 ~---~~i~GvVltk~d~~~~~g~~~~~~~~~----~~-Pi~~i~--~Ge~~~dl  296 (320)
T 1zu4_A          253 V---ADVSGIILTKMDSTSKGGIGLAIKELL----NI-PIKMIG--VGEKVDDL  296 (320)
T ss_dssp             T---SCCCEEEEECGGGCSCTTHHHHHHHHH----CC-CEEEEE--CSSSTTCE
T ss_pred             c---CCCcEEEEeCCCCCCchhHHHHHHHHH----Cc-CEEEEe--CCCCcccc
Confidence            1   112458999999754433333333332    33 566665  56666554

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.81  E-value=0.00017  Score=64.38  Aligned_cols=149  Identities=16%  Similarity=0.230  Sum_probs=76.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCC----------------Cceeee-------EE----EE--E
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKT----------------NTTTHE-------VL----GV--M  182 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~----------------~~t~~~-------~~----~~--~  182 (322)
                      .+-.++++|++|+||||++..|.+      .++.-.....                +.....       ..    ..  .
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a  182 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA  182 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence            456789999999999999987753      2222111110                000000       00    00  0


Q ss_pred             eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc-----ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCC
Q 020714          183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV-----NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK  257 (322)
Q Consensus       183 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~  257 (322)
                      ...+.++.++||||...     ........+......+     ..++.+++|+|+..   . ...+ ...+.+....   
T Consensus       183 ~~~~~dvvIiDtpg~~~-----~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t---~-~~~l-~~a~~~~~~~---  249 (306)
T 1vma_A          183 LARNKDVVIIDTAGRLH-----TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT---G-QNGL-VQAKIFKEAV---  249 (306)
T ss_dssp             HHTTCSEEEEEECCCCS-----CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG---H-HHHH-HHHHHHHHHS---
T ss_pred             HhcCCCEEEEECCCchh-----hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC---C-HHHH-HHHHHHHhcC---
Confidence            12356799999999531     1122222222222222     34688999999852   1 1112 2223332211   


Q ss_pred             CcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       258 ~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      ...-+|+||.|...............    +. |+.+++  .|++++++
T Consensus       250 ~i~gvVlTk~D~~~~gG~~l~~~~~~----~~-Pi~~i~--~Ge~~~dl  291 (306)
T 1vma_A          250 NVTGIILTKLDGTAKGGITLAIAREL----GI-PIKFIG--VGEKAEDL  291 (306)
T ss_dssp             CCCEEEEECGGGCSCTTHHHHHHHHH----CC-CEEEEE--CSSSGGGE
T ss_pred             CCCEEEEeCCCCccchHHHHHHHHHH----CC-CEEEEe--CCCChhhc
Confidence            12467899999865544443333333    33 577776  56666654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.79  E-value=1.3e-05  Score=71.67  Aligned_cols=86  Identities=17%  Similarity=0.373  Sum_probs=60.3

Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcCCCCCcEEEe
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      .+.++|.+++|+|+..+..... .+..++......   ++|.++|+||+|+.+...   ....+...+.. .+. +++.+
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~---~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~-~g~-~v~~~  156 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-IGY-DVYLT  156 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-HTC-CEEEC
T ss_pred             HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHC---CCCEEEEEECCccCchhhhHHHHHHHHHHHHh-CCC-eEEEE
Confidence            4688899999999976655544 455555544333   567999999999987643   23444444433 244 69999


Q ss_pred             ecCCCCCHHHHHHHH
Q 020714          296 SGLKGAGLKALTQYL  310 (322)
Q Consensus       296 Sa~~g~gi~el~~~i  310 (322)
                      ||.+|.|+++|++.+
T Consensus       157 sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          157 SSKDQDSLADIIPHF  171 (307)
T ss_dssp             CHHHHTTCTTTGGGG
T ss_pred             ecCCCCCHHHHHhhc
Confidence            999999999887643

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.77  E-value=3.1e-05  Score=68.97  Aligned_cols=145  Identities=12%  Similarity=0.152  Sum_probs=73.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC-------CeeeeecCCCC----------------ceeeeEE-------EEEeeCCc
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG-------TKVAAVSRKTN----------------TTTHEVL-------GVMTKADT  187 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~-------~~~~~~~~~~~----------------~t~~~~~-------~~~~~~~~  187 (322)
                      .+-.++++|++|+||||++..|.+       .++..+...+.                .......       ......+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~  183 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY  183 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence            456889999999999999987752       23322221110                0000000       00011456


Q ss_pred             cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV  267 (322)
Q Consensus       188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~  267 (322)
                      ++.|+||||.....     ......+...+. ....+.+++|+|++..    ...+..+...+...    ...-+|+||.
T Consensus       184 dlvIiDT~G~~~~~-----~~~~~el~~~l~-~~~~~~~~lVl~at~~----~~~~~~~~~~~~~l----~~~giVltk~  249 (296)
T 2px0_A          184 DHVFVDTAGRNFKD-----PQYIDELKETIP-FESSIQSFLVLSATAK----YEDMKHIVKRFSSV----PVNQYIFTKI  249 (296)
T ss_dssp             SEEEEECCCCCTTS-----HHHHHHHHHHSC-CCTTEEEEEEEETTBC----HHHHHHHTTTTSSS----CCCEEEEECT
T ss_pred             CEEEEeCCCCChhh-----HHHHHHHHHHHh-hcCCCeEEEEEECCCC----HHHHHHHHHHHhcC----CCCEEEEeCC
Confidence            89999999986321     111111222211 1235778899988542    12333334433321    1245778999


Q ss_pred             CCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH
Q 020714          268 DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL  303 (322)
Q Consensus       268 Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi  303 (322)
                      |..........    +....+. |+.+++  .|+++
T Consensus       250 D~~~~~g~~~~----~~~~~~~-pi~~i~--~ge~v  278 (296)
T 2px0_A          250 DETTSLGSVFN----ILAESKI-GVGFMT--NGQNV  278 (296)
T ss_dssp             TTCSCCHHHHH----HHHTCSC-CCSEEC--CSSCT
T ss_pred             CcccchhHHHH----HHHHHCc-CEEEEE--CCCCC
Confidence            98754332222    2233444 455554  56665

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.77  E-value=0.00033  Score=63.85  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+-.++++|++|+||||+++.|.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            466899999999999999998864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.70  E-value=0.0004  Score=61.85  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+-.++++|++|+||||+++.|.+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3466889999999999999998864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.49  E-value=0.0009  Score=62.35  Aligned_cols=101  Identities=13%  Similarity=0.179  Sum_probs=52.5

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      .+.++.|+||||.....     ......+... .....+|.+++|+|+..+   .+  .......+....   ...-+|+
T Consensus       179 ~~~DvVIIDTaG~l~~d-----~~l~~el~~i-~~~~~pd~vlLVvDa~tg---q~--av~~a~~f~~~l---~i~GVIl  244 (425)
T 2ffh_A          179 EARDLILVDTAGRLQID-----EPLMGELARL-KEVLGPDEVLLVLDAMTG---QE--ALSVARAFDEKV---GVTGLVL  244 (425)
T ss_dssp             TTCSEEEEECCCCSSCC-----HHHHHHHHHH-HHHHCCSEEEEEEEGGGT---TH--HHHHHHHHHHHT---CCCEEEE
T ss_pred             CCCCEEEEcCCCccccc-----HHHHHHHHHh-hhccCCceEEEEEeccch---HH--HHHHHHHHHhcC---CceEEEE
Confidence            45689999999975321     1111112111 122357889999998542   22  223333333211   1256899


Q ss_pred             eCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      ||.|..............    .+. |+.+++  .|+.++++
T Consensus       245 TKlD~~~~~g~alsi~~~----~g~-PI~flg--~Ge~~~dl  279 (425)
T 2ffh_A          245 TKLDGDARGGAALSARHV----TGK-PIYFAG--VSEKPEGL  279 (425)
T ss_dssp             ESGGGCSSCHHHHHHHHH----HCC-CEEEEE--CSSSGGGE
T ss_pred             eCcCCcccHHHHHHHHHH----HCC-CEEEEe--CCCChhhc
Confidence            999976543333222222    233 577766  45556554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.35  E-value=0.00086  Score=61.01  Aligned_cols=85  Identities=19%  Similarity=0.297  Sum_probs=55.4

Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHHHHHhcCCCCCcEEEee
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      .+.++|.+++|... .+. .....+..++......   ++|.++|+||+|+.+...  ....+...+.. .|. +++.+|
T Consensus       127 i~anvD~v~iv~a~-~P~-~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~-~G~-~v~~~S  199 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPE-LSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN-IGY-RVLMVS  199 (358)
T ss_dssp             EEECCCEEEEEEES-TTT-CCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-TTC-CEEECB
T ss_pred             HHhcCCEEEEEEeC-CCC-CCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHh-CCC-cEEEEe
Confidence            46788999977554 443 3333444454433222   456899999999987532  13344455443 455 599999


Q ss_pred             cCCCCCHHHHHHHH
Q 020714          297 GLKGAGLKALTQYL  310 (322)
Q Consensus       297 a~~g~gi~el~~~i  310 (322)
                      |++|.|++++...+
T Consensus       200 a~~~~gl~~L~~~~  213 (358)
T 2rcn_A          200 SHTQDGLKPLEEAL  213 (358)
T ss_dssp             TTTTBTHHHHHHHH
T ss_pred             cCCCcCHHHHHHhc
Confidence            99999999988754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.20  E-value=4.1e-05  Score=63.88  Aligned_cols=58  Identities=19%  Similarity=0.182  Sum_probs=35.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCee-eeecCCCCceeeeEEEEEeeCCccEEEEeCCCc
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKV-AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL  197 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~  197 (322)
                      .+-.++|+|++|+|||||++.|.+... ......+.+|+....+.  .+|..+.++|...+
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f   76 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEM   76 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHh
Confidence            345688999999999999999986432 12233444555433221  34555566665443

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.19  E-value=0.00062  Score=60.43  Aligned_cols=101  Identities=12%  Similarity=0.172  Sum_probs=48.8

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      .+.++.|+||||....    . ......+......+ .+|.+++|+|....   .+  .....+.+....   ...-+|+
T Consensus       179 ~~~D~viiDtpp~~~~----d-~~~~~~l~~~~~~~-~~~~~~lv~~~~~~---~~--~~~~~~~~~~~~---~i~givl  244 (295)
T 1ls1_A          179 EARDLILVDTAGRLQI----D-EPLMGELARLKEVL-GPDEVLLVLDAMTG---QE--ALSVARAFDEKV---GVTGLVL  244 (295)
T ss_dssp             HTCCEEEEECCCCSSC----C-HHHHHHHHHHHHHH-CCSEEEEEEEGGGT---HH--HHHHHHHHHHHT---CCCEEEE
T ss_pred             CCCCEEEEeCCCCccc----c-HHHHHHHHHHhhhc-CCCEEEEEEeCCCc---HH--HHHHHHHHhhcC---CCCEEEE
Confidence            3568999999987522    1 11112222222222 46888899998531   11  222333333211   1245899


Q ss_pred             eCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      ||.|..............    .+. |+.+++  .|++++++
T Consensus       245 nk~d~~~~~g~~~~~~~~----~~~-pi~~i~--~g~~~~dl  279 (295)
T 1ls1_A          245 TKLDGDARGGAALSARHV----TGK-PIYFAG--VSEKPEGL  279 (295)
T ss_dssp             ECGGGCSSCHHHHHHHHH----HCC-CEEEEC--------CC
T ss_pred             ECCCCCccHHHHHHHHHH----HCc-CEEEEe--CCCCcccc
Confidence            999986543333332222    233 577776  56666544

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.17  E-value=0.00045  Score=57.29  Aligned_cols=69  Identities=10%  Similarity=0.049  Sum_probs=43.0

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      ..++.++|||+...       .       .+...+..+|.+++++..+... ..-..+...++.+... .++.++.+|+|
T Consensus        75 ~yD~viiD~~~~~~-------~-------~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~vv~N  138 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS-------V-------ITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAY-SRKVEARFLIT  138 (206)
T ss_dssp             TSSEEEEECCSSSS-------H-------HHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCG-GGCCEEEEEEC
T ss_pred             CCCEEEEECCCCCC-------H-------HHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHh-CCCCcEEEEEe
Confidence            47899999997641       1       1112345579999999886533 2222444555554422 23456799999


Q ss_pred             CCCCC
Q 020714          266 KVDLV  270 (322)
Q Consensus       266 K~Dl~  270 (322)
                      ++|..
T Consensus       139 ~~~~~  143 (206)
T 4dzz_A          139 RKIEM  143 (206)
T ss_dssp             SBCTT
T ss_pred             ccCCC
Confidence            99954

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.05  E-value=0.0057  Score=54.72  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ...++|+|+.|+|||||+|.|.+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            346789999999999999999854

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.68  E-value=0.0008  Score=55.02  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +++++|++|+|||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.66  E-value=0.00091  Score=54.59  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +-.++++|++|+|||||++.|.+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.63  E-value=0.00072  Score=56.20  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      -.++|+|++|+|||||++.|.+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            45899999999999999998763

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.52  E-value=0.0015  Score=53.46  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+-.++++|++|+||||+++.|.+.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4567899999999999999999875

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.48  E-value=0.0014  Score=54.69  Aligned_cols=27  Identities=30%  Similarity=0.481  Sum_probs=23.3

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ...+..++|+|++|+|||||++.|.+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            356788999999999999999988764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.47  E-value=0.0014  Score=54.18  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+-.++++|++|+|||||++.|.+.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhh
Confidence            3456899999999999999998764

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.42  E-value=0.011  Score=55.25  Aligned_cols=23  Identities=39%  Similarity=0.654  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHh
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      ....|+|+|.+++|||+|+|.|+
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            45667899999999999999654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.37  E-value=0.0017  Score=54.24  Aligned_cols=25  Identities=12%  Similarity=0.322  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+..++++|++|+||||+++.|.+.
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhh
Confidence            4567899999999999999999865

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.36  E-value=0.0017  Score=54.90  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=22.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+.+-.++|+|++|+|||||++.|.+..
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            3456678999999999999999998743

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.31  E-value=0.002  Score=53.81  Aligned_cols=26  Identities=19%  Similarity=0.311  Sum_probs=21.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+-.++++|++|+|||||++.|.+.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34556899999999999999998764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.31  E-value=0.0016  Score=54.98  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+-.++|+|++|+|||||++.|.+.
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4556899999999999999999874

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.29  E-value=0.0068  Score=53.51  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=20.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +.+..+++.|+||+|||+|+.++..
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456678889999999999998864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.24  E-value=0.0016  Score=53.59  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchhHHHHHHhCC
Q 020714          142 VGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~  162 (322)
                      |+|+|++||||+||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.22  E-value=0.0024  Score=52.80  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+..++++|++|+||||+++.|.+.
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3567899999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.21  E-value=0.0023  Score=53.26  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+..++++|++|+|||||++.|.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999988763

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.11  E-value=0.0032  Score=50.86  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+-.++++|++|+|||||++.+.+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHcc
Confidence            455689999999999999997653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.10  E-value=0.0029  Score=53.67  Aligned_cols=26  Identities=35%  Similarity=0.429  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|++|+|||||++.+.|-.
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44568999999999999999998753

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.10  E-value=0.0034  Score=53.65  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=22.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            345578999999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.10  E-value=0.07  Score=45.49  Aligned_cols=25  Identities=16%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..+++.|+||+|||+++..+..
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3445689999999999999998865

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.05  E-value=0.0029  Score=52.57  Aligned_cols=25  Identities=16%  Similarity=0.381  Sum_probs=21.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..|+|+|++|+||||+++.|..
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999865

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.02  E-value=0.0033  Score=52.01  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..++++|++|+||||+++.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999998865

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.01  E-value=0.0037  Score=53.64  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCe
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      -.++++|++|+|||||++.+.|-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            458999999999999999998753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.96  E-value=0.0044  Score=49.55  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=22.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|+.|+|||||++.+.+..
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            445578999999999999999988754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.95  E-value=0.0039  Score=54.63  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=22.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            345568999999999999999998753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.95  E-value=0.003  Score=50.74  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..|+++|++|+||||+.+.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999998865

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.94  E-value=0.24  Score=42.58  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ......+++.|+||+|||+++.++..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence            34566799999999999999998865

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.94  E-value=0.004  Score=54.26  Aligned_cols=27  Identities=33%  Similarity=0.534  Sum_probs=22.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            345568999999999999999998753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.93  E-value=0.0039  Score=55.66  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=23.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ...+..++|+|++|+|||||++.|.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            456788999999999999999998763

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.93  E-value=0.12  Score=45.96  Aligned_cols=25  Identities=16%  Similarity=0.193  Sum_probs=21.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..+.+.|+||+|||++++.+..
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~   67 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMD   67 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHH
Confidence            4567889999999999999998864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.93  E-value=0.0038  Score=52.56  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      +-.++++|++|+|||||++.+.|-.
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3458999999999999999998853

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.93  E-value=0.0041  Score=53.56  Aligned_cols=26  Identities=23%  Similarity=0.475  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|++|+|||||++.+.|-.
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45578999999999999999998753

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.92  E-value=0.0045  Score=53.03  Aligned_cols=23  Identities=26%  Similarity=0.538  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHh
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      ++..++|+|++|+||||+++.|.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            35679999999999999999998

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.91  E-value=0.0057  Score=52.29  Aligned_cols=27  Identities=22%  Similarity=0.470  Sum_probs=23.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345578999999999999999998854

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.90  E-value=0.0046  Score=53.74  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=22.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345568999999999999999998753

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.89  E-value=0.061  Score=47.96  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..+++.|+||+|||+|+.++..
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHH
Confidence            45689999999999999999865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.88  E-value=0.0043  Score=50.69  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .++++|++|+||||+++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999975

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.88  E-value=0.006  Score=52.37  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=22.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+-.++++|++|+|||||++.+.|-
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            44567899999999999999999875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.87  E-value=0.0045  Score=53.61  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=22.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345578999999999999999998753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.85  E-value=0.0047  Score=49.26  Aligned_cols=20  Identities=30%  Similarity=0.526  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCchhHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYM  159 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l  159 (322)
                      ..|+++|+||+||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35889999999999999998

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.85  E-value=0.0052  Score=49.45  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..|+++|+||+||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.83  E-value=0.0038  Score=52.30  Aligned_cols=24  Identities=17%  Similarity=0.109  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +-.++++|++|+|||||++.+.+.
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            345899999999999999999876

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.83  E-value=0.0048  Score=53.23  Aligned_cols=26  Identities=27%  Similarity=0.512  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|++|+|||||++.+.|-.
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44568999999999999999998854

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.83  E-value=0.0051  Score=49.51  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..++++|++|+||||+++.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45789999999999999998864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.82  E-value=0.0068  Score=50.09  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+..|+++|++|+||||+++.|.+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999988653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.81  E-value=0.0053  Score=53.40  Aligned_cols=27  Identities=22%  Similarity=0.378  Sum_probs=22.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            345578999999999999999998753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.81  E-value=0.005  Score=52.36  Aligned_cols=26  Identities=23%  Similarity=0.524  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|++|+|||||++.+.|..
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578999999999999999998753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.80  E-value=0.0051  Score=53.05  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+-.++++|++|+|||||++.+.|-
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4456899999999999999999985

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.80  E-value=0.0033  Score=53.31  Aligned_cols=26  Identities=15%  Similarity=0.300  Sum_probs=17.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHh-CC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMV-GT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~-~~  162 (322)
                      ..+-.++|+|++|+|||||++.|. +.
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            345578999999999999999998 64

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.79  E-value=0.0055  Score=53.18  Aligned_cols=26  Identities=19%  Similarity=0.395  Sum_probs=22.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+-.++++|++|+|||||++.|.|-
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            34557899999999999999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.79  E-value=0.0055  Score=53.07  Aligned_cols=27  Identities=22%  Similarity=0.427  Sum_probs=22.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.|.|-.
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            345578999999999999999998753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.78  E-value=0.0046  Score=54.94  Aligned_cols=27  Identities=33%  Similarity=0.516  Sum_probs=22.8

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+.+-.++|+|++|+|||||++.|.+
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhh
Confidence            345666899999999999999998875

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.78  E-value=0.0058  Score=50.73  Aligned_cols=28  Identities=25%  Similarity=0.506  Sum_probs=24.0

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ....+..|+++|.+|+||||+++.|.+.
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3455678999999999999999999875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.77  E-value=0.0054  Score=48.96  Aligned_cols=21  Identities=14%  Similarity=0.077  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|+++|++|+||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.77  E-value=0.0052  Score=52.62  Aligned_cols=26  Identities=19%  Similarity=0.489  Sum_probs=22.1

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+..|+|+|++|+|||||++.|.+
T Consensus        22 i~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           22 SMRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998866

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.77  E-value=0.0053  Score=52.59  Aligned_cols=26  Identities=31%  Similarity=0.523  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|++|+|||||++.+.|-.
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45568999999999999999998753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.76  E-value=0.012  Score=51.88  Aligned_cols=27  Identities=15%  Similarity=0.118  Sum_probs=22.9

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....+..|+|+|++|+|||||++.|.+
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678899999999999999998764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.76  E-value=0.0052  Score=53.95  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=22.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            345568999999999999999998753

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.2  Score=46.68  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=21.7

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+--|++.|+||+|||+|+.++.+
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            34455689999999999999999865

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.74  E-value=0.0055  Score=53.24  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=21.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+-.++|+|++|+|||||++.+.+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHH
Confidence            3455789999999999999999876

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.74  E-value=0.0059  Score=53.32  Aligned_cols=27  Identities=15%  Similarity=0.300  Sum_probs=22.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++|+|++|+|||||++.|.|-.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345578999999999999999998753

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.72  E-value=0.0062  Score=53.07  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=22.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+-.++++|++|+|||||++.+.|-
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34557899999999999999999985

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.72  E-value=0.0041  Score=51.28  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4889999999999999998764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.71  E-value=0.00076  Score=63.85  Aligned_cols=26  Identities=19%  Similarity=0.319  Sum_probs=21.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+.+|+++|.||+||||+.+.|...
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999998653

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.71  E-value=0.0065  Score=49.31  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..|+++|++|+||||+.+.|..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999998863

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.71  E-value=0.0065  Score=49.54  Aligned_cols=24  Identities=17%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..|+++|+||+||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999998854

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.70  E-value=0.0056  Score=52.92  Aligned_cols=26  Identities=23%  Similarity=0.603  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|++|+|||||++.+.|-.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44568999999999999999998854

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.66  E-value=0.0054  Score=51.52  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...|+++|++|+||||+.+.|.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.66  E-value=0.0069  Score=50.18  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +.|+++|++|+||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.15  Score=47.33  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=21.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+--+++.|+||+|||+|+.++.+
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3445589999999999999999865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.64  E-value=0.0068  Score=52.76  Aligned_cols=27  Identities=19%  Similarity=0.402  Sum_probs=22.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            345578999999999999999998753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.61  E-value=0.011  Score=50.61  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=22.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+.+|+++|+||+||||+...|..
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999999998863

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.61  E-value=0.0064  Score=49.42  Aligned_cols=24  Identities=8%  Similarity=0.252  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ...++++|++|+|||||++.|.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            346889999999999999998764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.60  E-value=0.0066  Score=54.36  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=22.3

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...++.|+|+|++|+|||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45678899999999999999988754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.58  E-value=0.007  Score=48.72  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..|.++|+||+||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.57  E-value=0.0072  Score=49.11  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..|+|.|++|+||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998854

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.57  E-value=0.021  Score=47.64  Aligned_cols=68  Identities=12%  Similarity=0.060  Sum_probs=40.1

Q ss_pred             CCccEEEEeCCCc-ccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          185 ADTQICIFDTPGL-MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       185 ~~~~~~l~DtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ...++.++|||+. ...       .       +...+..+|.+++++..+..   ........++.+....  +.++.+|
T Consensus        66 ~~yD~viiD~p~~~~~~-------~-------~~~~l~~aD~viiv~~~~~~---~~~~~~~~~~~l~~~~--~~~~~vv  126 (209)
T 3cwq_A           66 PKYQNIVIDTQARPEDE-------D-------LEALADGCDLLVIPSTPDAL---ALDALMLTIETLQKLG--NNRFRIL  126 (209)
T ss_dssp             GGCSEEEEEEECCCSSS-------H-------HHHHHHTSSEEEEEECSSHH---HHHHHHHHHHHHHHTC--SSSEEEE
T ss_pred             hcCCEEEEeCCCCcCcH-------H-------HHHHHHHCCEEEEEecCCch---hHHHHHHHHHHHHhcc--CCCEEEE
Confidence            3568999999986 321       1       11234567999999987321   1122333333333211  3458899


Q ss_pred             EeCCCCCC
Q 020714          264 MNKVDLVT  271 (322)
Q Consensus       264 ~NK~Dl~~  271 (322)
                      +|+.|...
T Consensus       127 ~N~~~~~~  134 (209)
T 3cwq_A          127 LTIIPPYP  134 (209)
T ss_dssp             ECSBCCTT
T ss_pred             EEecCCcc
Confidence            99999754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.54  E-value=0.006  Score=50.43  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      +|+|+|++|+||||+.+.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.53  E-value=0.0072  Score=52.53  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      +-.++++|++|+|||||++.+.|..
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            4568999999999999999998864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.52  E-value=0.0059  Score=50.47  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...|+|+|.+|+||||+.+.|.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.51  E-value=0.0059  Score=49.45  Aligned_cols=24  Identities=17%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            556899999999999999988764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.50  E-value=0.0057  Score=54.44  Aligned_cols=26  Identities=23%  Similarity=0.469  Sum_probs=22.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+-.++|+|++|+|||||++.|.+-
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcC
Confidence            45567999999999999999999874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.50  E-value=0.016  Score=50.94  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..|+++|+||+||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.50  E-value=0.0085  Score=48.82  Aligned_cols=25  Identities=28%  Similarity=0.577  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+..|+++|++|+||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999988653

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.47  E-value=0.0036  Score=50.76  Aligned_cols=22  Identities=27%  Similarity=0.628  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .++|+|++|+|||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.45  E-value=0.013  Score=50.40  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=22.5

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....+..|+++|+||+||||+.+.|..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344567899999999999999998854

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.44  E-value=0.0088  Score=49.38  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....|+++|++|+||||+.+.|.+
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            455799999999999999998864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.44  E-value=0.0074  Score=53.68  Aligned_cols=25  Identities=20%  Similarity=0.313  Sum_probs=22.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..|+|+|++|+|||||++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5567899999999999999998876

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.43  E-value=0.0081  Score=49.74  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=21.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..++++|.+|+||||+++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.42  E-value=0.0089  Score=50.11  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ++..|+|+|+||+||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998854

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.40  E-value=0.0097  Score=49.20  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..|+|.|.+|+||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.40  E-value=0.0099  Score=48.94  Aligned_cols=25  Identities=12%  Similarity=0.238  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ++..|+|.|.+|+||||+++.|...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998753

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.37  E-value=0.009  Score=48.55  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|+|.|+||+||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.37  E-value=0.0088  Score=49.88  Aligned_cols=21  Identities=24%  Similarity=0.534  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      +|+|+|+||+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.35  E-value=0.011  Score=48.85  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.1

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+..|+|+|+||+||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44567899999999999999998854

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.32  E-value=0.0096  Score=48.90  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|+|+|.+|+||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999998865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.32  E-value=0.011  Score=50.84  Aligned_cols=24  Identities=17%  Similarity=0.327  Sum_probs=21.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHh
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      ..+..|+|+|++|+||||+++.|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999997

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.32  E-value=0.01  Score=48.25  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..|+++|.||+||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.31  E-value=0.064  Score=47.73  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....+++.|+||+|||+|+.++..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            345799999999999999998864

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.26  Score=45.65  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +.+--|++.|+||+|||+|+.++.+
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred             CCCCCCceECCCCchHHHHHHHHHH
Confidence            3445699999999999999999965

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.29  E-value=0.0097  Score=49.65  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      +|+|+|+||+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.28  E-value=0.012  Score=51.99  Aligned_cols=27  Identities=22%  Similarity=0.526  Sum_probs=23.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.|.|-.
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            345578999999999999999998854

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.28  E-value=0.01  Score=49.19  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ++..|+|+|.+|+||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.27  E-value=0.01  Score=49.15  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=21.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..|+|.|.+|+||||+.+.|..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3467899999999999999998864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.26  E-value=0.009  Score=50.08  Aligned_cols=27  Identities=11%  Similarity=0.208  Sum_probs=22.8

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....+-.++++|++|+|||||++.+.+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            344566789999999999999999876

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.26  E-value=0.011  Score=53.87  Aligned_cols=27  Identities=33%  Similarity=0.462  Sum_probs=22.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.+-.
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            445578999999999999999998753

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.23  E-value=0.011  Score=48.27  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ++..|+++|.+|+||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998853

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.18  E-value=0.0087  Score=47.22  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+-.++++|++|+|||||++.+.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3456889999999999999998763

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.17  E-value=0.01  Score=53.89  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|++|+|||||++.+.|-.
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            44568999999999999999998854

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.17  E-value=0.14  Score=44.25  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..+++.|+||+|||++++.+..
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            3455699999999999999999864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.16  E-value=0.068  Score=46.72  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..+++.|+||+|||++++.+.+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            345789999999999999999865

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.15  E-value=0.011  Score=49.88  Aligned_cols=23  Identities=26%  Similarity=0.548  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHh
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      ++..|+|+|++|+||||+.+.|.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH
Confidence            35679999999999999999886

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.15  E-value=0.014  Score=47.49  Aligned_cols=25  Identities=28%  Similarity=0.565  Sum_probs=21.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..|+++|.+|+||||+++.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3567899999999999999998864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.14  E-value=0.0083  Score=54.65  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .-+++|+|++|+|||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999999875

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.14  E-value=0.011  Score=50.13  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=22.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+..|+|.|..|+||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45678999999999999999998764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.13  E-value=0.012  Score=53.53  Aligned_cols=26  Identities=27%  Similarity=0.672  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|++|+|||||++.+.|-.
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44568999999999999999998754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.09  E-value=0.01  Score=49.82  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..|+|+|+||+||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998863

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.08  E-value=0.013  Score=47.41  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..|+++|.+|+||||+.+.|.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999998865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.07  E-value=0.013  Score=47.42  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...|+++|++|+||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998853

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.06  E-value=0.01  Score=53.87  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .++|+|++|+|||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            789999999999999999865

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.03  E-value=0.0091  Score=54.40  Aligned_cols=25  Identities=12%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+-.++|+|++|+|||||++.|.+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3456899999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.01  E-value=0.016  Score=47.80  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....|+|+|.+|+||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998863

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.00  E-value=0.015  Score=47.03  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...++++|++|+|||||+++|..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.00  E-value=0.012  Score=47.53  Aligned_cols=24  Identities=17%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....|+++|++|+||||+.+.|..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            345689999999999999998863

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.99  E-value=0.011  Score=53.25  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +-.++++|++|+|||||++.|.+.
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345899999999999999999874

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=94.98  E-value=0.014  Score=49.45  Aligned_cols=65  Identities=12%  Similarity=0.206  Sum_probs=36.8

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM  264 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~  264 (322)
                      ...++.|+|||+.....              +...+..+|.++++++.+...-..-..+..++..++.     ..+.+|+
T Consensus       130 ~~yD~viiD~pp~~~~~--------------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~-----~~~~~v~  190 (254)
T 3kjh_A          130 DKKEAVVMDMGAGIEHL--------------TRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGI-----KKVRYVI  190 (254)
T ss_dssp             TCCSEEEEEECTTCTTC--------------CHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTC-----SCEEEEE
T ss_pred             CCCCEEEEeCCCcccHH--------------HHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCC-----ccEEEEE
Confidence            45678899998644211              1123466799999998732111111123333444332     3478999


Q ss_pred             eCCC
Q 020714          265 NKVD  268 (322)
Q Consensus       265 NK~D  268 (322)
                      |+.+
T Consensus       191 N~~~  194 (254)
T 3kjh_A          191 NKVR  194 (254)
T ss_dssp             EEEC
T ss_pred             eCCC
Confidence            9998

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.98  E-value=0.34  Score=44.50  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=21.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+--|++.|+||+|||+|+.++.+
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHH
Confidence            3345589999999999999999965

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.97  E-value=0.015  Score=52.93  Aligned_cols=26  Identities=19%  Similarity=0.424  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|++|+|||||++.+.|-.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            44568999999999999999998753

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.97  E-value=0.015  Score=48.49  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..|+|+|.+|+||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.97  E-value=0.013  Score=53.47  Aligned_cols=26  Identities=15%  Similarity=0.409  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|++|+|||||++.+.|-.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            34468999999999999999998754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.96  E-value=0.015  Score=47.66  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=22.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .++..|+|+|.+|+||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34678999999999999999998754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.93  E-value=0.013  Score=53.49  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+-.++|+|++|+|||||++.|.+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            455689999999999999999875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.92  E-value=0.015  Score=52.87  Aligned_cols=27  Identities=19%  Similarity=0.458  Sum_probs=22.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            344568999999999999999998753

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.91  E-value=0.071  Score=49.60  Aligned_cols=26  Identities=15%  Similarity=0.239  Sum_probs=21.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+.+-.|++.|+||+|||+|+.++.+
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence            34456799999999999999999865

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.90  E-value=0.016  Score=53.11  Aligned_cols=27  Identities=22%  Similarity=0.486  Sum_probs=22.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            344568999999999999999998854

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=94.89  E-value=0.016  Score=50.05  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..|+++|.||+||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46789999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=94.88  E-value=0.011  Score=47.62  Aligned_cols=23  Identities=22%  Similarity=0.183  Sum_probs=16.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..|++.|.+|+||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998853

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.86  E-value=0.015  Score=48.55  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      +|+|+|+||+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=94.85  E-value=0.015  Score=47.53  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..|+++|.+|+||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.84  E-value=0.016  Score=46.05  Aligned_cols=21  Identities=24%  Similarity=0.324  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      +|++.|.+|+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.81  E-value=0.017  Score=52.77  Aligned_cols=27  Identities=15%  Similarity=0.430  Sum_probs=22.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            345568999999999999999998753

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=94.80  E-value=0.013  Score=51.21  Aligned_cols=20  Identities=25%  Similarity=0.473  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchhHHHHHHhC
Q 020714          142 VGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~  161 (322)
                      ++++|+||+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999976

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.79  E-value=0.38  Score=44.99  Aligned_cols=25  Identities=16%  Similarity=0.312  Sum_probs=21.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+--|++.|+||+|||+|+.++.+
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHh
Confidence            4455689999999999999999865

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.78  E-value=0.016  Score=48.50  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +...|+|+|.||+||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998853

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=94.73  E-value=0.53  Score=40.21  Aligned_cols=67  Identities=13%  Similarity=0.036  Sum_probs=36.8

Q ss_pred             CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE-EE
Q 020714          185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LC  263 (322)
Q Consensus       185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i-vV  263 (322)
                      ...++.|+|||+....      ....  .    ..+..+|.+++|+..+..  . ...+...++.+...   +.+++ +|
T Consensus       127 ~~yD~ViID~pp~~~~------~~~~--~----~~~~~aD~viiv~~~~~~--s-~~~~~~~~~~l~~~---~~~~~gvV  188 (262)
T 2ph1_A          127 GELDHLLIDLPPGTGD------APLT--V----MQDAKPTGVVVVSTPQEL--T-AVIVEKAINMAEET---NTSVLGLV  188 (262)
T ss_dssp             CSCSEEEEECCSSSSS------HHHH--H----HHHHCCSEEEEEECSSSC--C-HHHHHHHHHHHHTT---TCCEEEEE
T ss_pred             cCCCEEEEECcCCCch------HHHH--H----HhhccCCeEEEEecCccc--h-HHHHHHHHHHHHhC---CCCEEEEE
Confidence            3467889999875421      1100  0    111247999999877432  1 22344444444432   34566 99


Q ss_pred             EeCCCC
Q 020714          264 MNKVDL  269 (322)
Q Consensus       264 ~NK~Dl  269 (322)
                      +|+.|.
T Consensus       189 ~N~~~~  194 (262)
T 2ph1_A          189 ENMSYF  194 (262)
T ss_dssp             ETTCCE
T ss_pred             ECCCcc
Confidence            999874

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.68  E-value=0.017  Score=55.12  Aligned_cols=24  Identities=17%  Similarity=0.357  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +..++|+|++|+|||||++.|++.
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            445899999999999999999863

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.67  E-value=0.018  Score=46.72  Aligned_cols=21  Identities=14%  Similarity=0.272  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|++.|.+|+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=94.63  E-value=0.015  Score=49.83  Aligned_cols=20  Identities=30%  Similarity=0.657  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchhHHHHHHhC
Q 020714          142 VGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~  161 (322)
                      ++++|+||+|||||++.+.+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.63  E-value=0.014  Score=52.76  Aligned_cols=26  Identities=23%  Similarity=0.402  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|++|+|||||++.+.|-.
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCC
Confidence            44568999999999999999998754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.63  E-value=0.02  Score=46.44  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..|+++|.+|+||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998853

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.59  E-value=0.016  Score=46.51  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      +|+++|+||+||||+...|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999998854

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.56  E-value=0.0084  Score=49.78  Aligned_cols=21  Identities=29%  Similarity=0.583  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|+|+|.+|+||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.54  E-value=0.02  Score=48.11  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|+|+|+||+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998853

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=94.51  E-value=0.022  Score=47.38  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..|+++|.+|+||||+.+.|.+
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4567789999999999999998865

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.51  E-value=0.022  Score=48.81  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=21.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..++.|+|.|.+|+||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998754

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.51  E-value=0.022  Score=47.55  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      +|+++|+||+||+|....|..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999988864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.50  E-value=0.021  Score=52.49  Aligned_cols=26  Identities=23%  Similarity=0.514  Sum_probs=22.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+-.++++|++|+|||||++.+.|-
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCC
Confidence            34556899999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.48  E-value=0.024  Score=48.02  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..|+|+|.+|+||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998853

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.48  E-value=0.025  Score=45.38  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ...+++.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            455889999999999999988653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.46  E-value=0.025  Score=47.90  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=21.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..|+|.|++|+||||+++.|..
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            4577899999999999999998865

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.45  E-value=0.022  Score=49.85  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHh
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      ..++.|+|+|.+|+||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            346789999999999999999886

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.43  E-value=0.08  Score=47.89  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+++.|+||+|||+|+.++..
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHH
Confidence            34589999999999999998865

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.43  E-value=0.014  Score=53.07  Aligned_cols=27  Identities=26%  Similarity=0.597  Sum_probs=22.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344568999999999999999998754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.42  E-value=0.018  Score=46.62  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|+++|.||+||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999988753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=94.38  E-value=0.022  Score=52.86  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .-.++|+|++|+|||||++.+++
T Consensus       167 ggii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          167 HGIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHh
Confidence            34689999999999999999875

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.33  E-value=0.023  Score=45.35  Aligned_cols=21  Identities=14%  Similarity=0.305  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|+++|.+|+||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999988753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=94.31  E-value=0.025  Score=48.20  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHh
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      .++.|+++|++|+||||+.+.|.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999886

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.30  E-value=0.028  Score=47.28  Aligned_cols=27  Identities=11%  Similarity=0.305  Sum_probs=21.6

Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKDLGLK  320 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~~~~~  320 (322)
                      ++.+.+-  ..++++++.|...+.+.+++
T Consensus       191 l~~Idg~--~~~eeV~~~I~~~l~k~G~k  217 (217)
T 3umf_A          191 VITIDAS--GTVDAIFDKVNHELQKFGVK  217 (217)
T ss_dssp             EEEEETT--SCHHHHHHHHHHHHHTTTCC
T ss_pred             EEEEECC--CCHHHHHHHHHHHHHHcCCC
Confidence            6777764  38999999999999887654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=94.24  E-value=0.02  Score=51.38  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+++.|+||+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999998763

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.24  E-value=0.023  Score=47.45  Aligned_cols=26  Identities=15%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+-.++++|++|+|||||++.+.+
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            34556788999999999999998873

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=94.22  E-value=0.064  Score=46.56  Aligned_cols=20  Identities=30%  Similarity=0.657  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchhHHHHHHhC
Q 020714          142 VGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~  161 (322)
                      ++++|++|+|||||++.+.+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHH
Confidence            89999999999999999875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.20  E-value=0.024  Score=45.76  Aligned_cols=20  Identities=35%  Similarity=0.527  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~  160 (322)
                      ..+|+|++|+|||||+.++.
T Consensus        28 ~~~i~G~NGsGKStll~ai~   47 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAIL   47 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            56799999999999999875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.18  E-value=0.032  Score=45.96  Aligned_cols=26  Identities=19%  Similarity=0.480  Sum_probs=22.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ...+.|+++|.+|+||||+.+.|...
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            45788999999999999999988643

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.18  E-value=0.028  Score=44.73  Aligned_cols=22  Identities=27%  Similarity=0.240  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      -.|+++|.+|+||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=94.15  E-value=0.025  Score=48.67  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .++|+|++|+|||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.13  E-value=0.17  Score=47.66  Aligned_cols=22  Identities=23%  Similarity=0.554  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..++++|+||+|||+|++++.+
T Consensus        50 ~gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3489999999999999999876

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.10  E-value=0.027  Score=54.15  Aligned_cols=27  Identities=30%  Similarity=0.645  Sum_probs=23.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.|.|..
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345578999999999999999998854

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.09  E-value=0.038  Score=51.95  Aligned_cols=27  Identities=22%  Similarity=0.359  Sum_probs=22.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ...+-.++|+|++|+|||||++.|.+-
T Consensus       135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          135 NFEGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            345677999999999999999998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=93.97  E-value=0.024  Score=48.83  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +-.|+++|++|+||||+.+.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999998854

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=93.97  E-value=0.12  Score=46.61  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .....+++.|+||+|||+|+.++..
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3455799999999999999999864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.93  E-value=0.027  Score=50.96  Aligned_cols=26  Identities=19%  Similarity=0.423  Sum_probs=22.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .++-+++++|++|+|||||++.+.+.
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45668999999999999999999875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.89  E-value=0.03  Score=54.27  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+-.++++|++|+|||||++.+.|-
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhc
Confidence            4457999999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.89  E-value=0.034  Score=53.34  Aligned_cols=27  Identities=19%  Similarity=0.620  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCee
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKV  164 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~  164 (322)
                      .+-.++++|++|+|||||++.|.|...
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            455789999999999999999998543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=93.84  E-value=0.033  Score=46.15  Aligned_cols=27  Identities=15%  Similarity=0.055  Sum_probs=22.7

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....+-.++++|++|+|||||+..+.+
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345566789999999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.84  E-value=0.03  Score=49.11  Aligned_cols=26  Identities=12%  Similarity=0.165  Sum_probs=21.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+-.++|+|+||+|||||++.+.+
T Consensus        32 l~~G~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           32 ARGGEVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             BCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            44555789999999999999988764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.78  E-value=0.031  Score=44.74  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+++.|++|+|||+++..+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            44678999999999999988764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=93.76  E-value=0.045  Score=46.87  Aligned_cols=23  Identities=26%  Similarity=0.556  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..+++.|+||+|||++++++.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34589999999999999999865

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.76  E-value=0.034  Score=53.95  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=22.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      +.+-.++++|++|+|||||++.+.|-.
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345578999999999999999998743

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=93.75  E-value=0.036  Score=46.97  Aligned_cols=27  Identities=22%  Similarity=0.497  Sum_probs=22.0

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....+..|+++|.+|+||||+.+.|.+
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            345677899999999999999998864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=93.71  E-value=0.031  Score=52.80  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      -.++|+|++|+|||||++.|.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            4688999999999999999875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=93.66  E-value=0.035  Score=50.74  Aligned_cols=26  Identities=15%  Similarity=0.139  Sum_probs=22.1

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+.+-.++++|++|+|||||++.|.+
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            44556789999999999999998875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=93.64  E-value=0.042  Score=46.02  Aligned_cols=24  Identities=17%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....+++.|++|+|||+|+..+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999988764

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=93.64  E-value=0.34  Score=45.16  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..+++.|+||+|||+|+.++..
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~  189 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVAT  189 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998865

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.63  E-value=0.035  Score=54.04  Aligned_cols=27  Identities=22%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      +.+-.++++|++|+|||||++.+.+-.
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            345689999999999999999998743

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=93.63  E-value=0.12  Score=47.33  Aligned_cols=24  Identities=17%  Similarity=0.383  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....++|.|+||+|||+|+.++..
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999854

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=93.58  E-value=0.53  Score=39.83  Aligned_cols=67  Identities=12%  Similarity=0.157  Sum_probs=38.6

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC------CCCc
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP------PKQK  259 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~------~~~p  259 (322)
                      ..++.|+|||+-..       .       .+...+..+|.++++++.+..   .......++..+.....      +...
T Consensus       113 ~yD~viiD~p~~~~-------~-------~~~~~l~~ad~vi~v~~~~~~---s~~~~~~~~~~l~~~~~~~~~~~~~~~  175 (260)
T 3q9l_A          113 DFEFIVCDSPAGIE-------T-------GALMALYFADEAIITTNPEVS---SVRDSDRILGILASKSRRAENGEEPIK  175 (260)
T ss_dssp             TCSEEEEECCSSSS-------H-------HHHHHHHTCSEEEEEECSSHH---HHHHHHHHHHHHTTSSHHHHTTCSCCE
T ss_pred             CCCEEEEcCCCCCC-------H-------HHHHHHHhCCEEEEEecCChh---HHHHHHHHHHHHHHhccccccccCCcc
Confidence            57889999987431       1       112334567999999987321   11233344444443211      2245


Q ss_pred             EEEEEeCCCC
Q 020714          260 RVLCMNKVDL  269 (322)
Q Consensus       260 ~ivV~NK~Dl  269 (322)
                      +.+|+|+.|.
T Consensus       176 ~~~v~N~~~~  185 (260)
T 3q9l_A          176 EHLLLTRYNP  185 (260)
T ss_dssp             EEEEEEEECH
T ss_pred             eEEEEecCCc
Confidence            7899999984

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=93.56  E-value=0.042  Score=48.19  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..|+++|.||+||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998875

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=93.55  E-value=0.036  Score=46.71  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=22.7

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+.+-.++++|++|+|||||+..+.+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence            345566789999999999999998876

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=93.54  E-value=0.031  Score=48.22  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=22.0

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..++..|+|.|.+|+||||+++.|...
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence            346778999999999999999988653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=93.52  E-value=0.038  Score=53.85  Aligned_cols=28  Identities=25%  Similarity=0.642  Sum_probs=23.5

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCee
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV  164 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~  164 (322)
                      ..+-.++++|++|+|||||++.|.|...
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            3455789999999999999999988543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=93.51  E-value=0.046  Score=53.25  Aligned_cols=28  Identities=21%  Similarity=0.523  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeee
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVA  165 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~  165 (322)
                      .+-.++++|++|+|||||++.|.|...+
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P  129 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGKQKP  129 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence            4557899999999999999999986433

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=93.50  E-value=0.064  Score=41.68  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....|.+.|+||+|||++...+..
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHH
Confidence            445689999999999999998854

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=93.45  E-value=0.044  Score=43.06  Aligned_cols=20  Identities=35%  Similarity=0.529  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCchhHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~  160 (322)
                      ..+|+|+.|+||||++.++.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=93.43  E-value=0.03  Score=54.28  Aligned_cols=26  Identities=31%  Similarity=0.524  Sum_probs=22.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +.+-.++++|++|+|||||++.+.|-
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcC
Confidence            34557999999999999999999874

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=93.43  E-value=0.047  Score=44.77  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=93.39  E-value=0.056  Score=44.74  Aligned_cols=25  Identities=28%  Similarity=0.272  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+..|+|+|++|+|||+|...|...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.30  E-value=0.051  Score=52.18  Aligned_cols=25  Identities=28%  Similarity=0.574  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      +-.++++|++|+|||||++.|.|..
T Consensus       294 Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          294 GEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4468999999999999999998854

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.29  E-value=0.04  Score=51.44  Aligned_cols=26  Identities=19%  Similarity=0.414  Sum_probs=22.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+-+++++|++|+|||||++.+.+.
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            45667999999999999999999874

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.21  E-value=0.04  Score=53.54  Aligned_cols=25  Identities=24%  Similarity=0.489  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+-.++++|++|+|||||++.+.+-
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457899999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.11  E-value=0.057  Score=51.81  Aligned_cols=25  Identities=24%  Similarity=0.656  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      +-.++|+|+.|+|||||++.|.|..
T Consensus       312 Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          312 GEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4478999999999999999999864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.02  E-value=0.059  Score=45.73  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..|++.|.+|+||||+++.|..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            45789999999999999998864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=92.97  E-value=0.05  Score=49.50  Aligned_cols=20  Identities=30%  Similarity=0.390  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCchhHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~  160 (322)
                      -.+|+|++|+|||||+++++
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            35699999999999999876

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.91  E-value=0.063  Score=52.27  Aligned_cols=26  Identities=23%  Similarity=0.607  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCee
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKV  164 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~  164 (322)
                      +-.++++|+.|+|||||++.|.|...
T Consensus       382 Gei~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          382 GEVIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34689999999999999999998643

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=92.90  E-value=0.038  Score=48.64  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=17.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +.+.|+|.|++|+||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=92.86  E-value=0.05  Score=52.36  Aligned_cols=27  Identities=22%  Similarity=0.382  Sum_probs=23.2

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ...+..++|+|++|+|||||++.|.+.
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHh
Confidence            446778999999999999999998764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=92.83  E-value=0.059  Score=44.24  Aligned_cols=20  Identities=20%  Similarity=0.335  Sum_probs=18.3

Q ss_pred             EEEEcCCCCchhHHHHHHhC
Q 020714          142 VGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~  161 (322)
                      +++.|++|+|||+++..+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=92.78  E-value=0.064  Score=44.00  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|+|.|.+|+||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=92.77  E-value=0.049  Score=45.32  Aligned_cols=21  Identities=24%  Similarity=0.260  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999988777653

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=92.75  E-value=0.06  Score=44.75  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .++|.|++|+|||+++..+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=92.68  E-value=0.069  Score=45.27  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+.+|+|+||+||||+...|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            467899999999999999988753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.52  E-value=0.067  Score=52.10  Aligned_cols=25  Identities=20%  Similarity=0.486  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeee
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVA  165 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~  165 (322)
                      .++++|++|+|||||++.|.|...+
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Confidence            3799999999999999999986543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=92.49  E-value=0.075  Score=49.25  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+..|+++|+||+||||+.+.|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3467889999999999999998753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=92.35  E-value=0.063  Score=46.65  Aligned_cols=26  Identities=15%  Similarity=0.155  Sum_probs=21.5

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+-.++|+|++|+|||||+..+.+
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            34556789999999999999988764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=92.34  E-value=0.096  Score=47.00  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +..|+|+|++|+|||||...|...
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=92.26  E-value=0.073  Score=45.04  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=18.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .++.-|.|.|.+|+||||+++.|..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4677899999999999999998864

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=92.25  E-value=0.081  Score=46.40  Aligned_cols=25  Identities=24%  Similarity=0.537  Sum_probs=20.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .....++|.|+||+|||+++..+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3455799999999999999987654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=92.16  E-value=0.078  Score=46.71  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=21.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..+++.|+||+|||+|++++.+
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHH
Confidence            3455689999999999999999865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=92.16  E-value=0.17  Score=44.31  Aligned_cols=22  Identities=14%  Similarity=0.314  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+++.|+||+|||+++..+.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4689999999999999998764

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=92.15  E-value=0.099  Score=43.71  Aligned_cols=24  Identities=29%  Similarity=0.445  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ++.-|.|.|.+|+||||+++.|..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            466789999999999999998853

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=92.09  E-value=0.2  Score=45.31  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+++++|++|+||||+...|.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999987654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=92.01  E-value=0.075  Score=41.21  Aligned_cols=23  Identities=13%  Similarity=0.224  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...|.+.|+||+|||++...+..
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCC
T ss_pred             CCcEEEECCCCccHHHHHHHHHH
Confidence            34589999999999999998854

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.99  E-value=0.064  Score=48.10  Aligned_cols=20  Identities=15%  Similarity=0.232  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchhHHHHHHhC
Q 020714          142 VGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~  161 (322)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998866

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=91.97  E-value=0.063  Score=57.14  Aligned_cols=26  Identities=15%  Similarity=0.438  Sum_probs=22.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +.+-+|++||++|+|||||++.|.+-
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcC
Confidence            34568999999999999999999863

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=91.91  E-value=0.073  Score=47.26  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+++.|+||+|||+|+..+.+
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4588999999999999998864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=91.82  E-value=0.11  Score=46.20  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..|+|+|++|+|||||...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            45789999999999999998643

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=91.79  E-value=0.072  Score=48.01  Aligned_cols=24  Identities=21%  Similarity=0.516  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+-.++|.|++|+|||||++.+.+
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            344688999999999999998875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=91.77  E-value=0.1  Score=46.86  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..|+|+|++|+|||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=91.72  E-value=0.11  Score=46.44  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..|+|+|++|+|||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=91.72  E-value=0.085  Score=47.71  Aligned_cols=21  Identities=19%  Similarity=0.457  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .++|.|++|+|||||++.+.+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~   66 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWE   66 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=91.70  E-value=0.19  Score=44.74  Aligned_cols=23  Identities=17%  Similarity=0.203  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+++.|+||+|||+++..+..
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34589999999999999998854

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=91.69  E-value=0.087  Score=43.74  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..|+++|++|+||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999988754

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=91.66  E-value=0.099  Score=43.26  Aligned_cols=20  Identities=35%  Similarity=0.529  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCchhHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~  160 (322)
                      ..+|+|+.|+||||++.++.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            35788999999999999864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=91.65  E-value=0.091  Score=45.91  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..+++.|+||+|||+++..+..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999998864

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=91.63  E-value=0.26  Score=49.43  Aligned_cols=26  Identities=19%  Similarity=0.368  Sum_probs=21.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+.-|++.|+||+|||+|++++.+.
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34557999999999999999999753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=91.59  E-value=0.064  Score=54.88  Aligned_cols=25  Identities=40%  Similarity=0.671  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      +-.++|+|++|+|||||++.|.|..
T Consensus       699 GeivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          699 SSRIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             TCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999998853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	322
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	8e-19
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	6e-18
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	4e-17
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	6e-17
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	4e-16
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	7e-16
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	4e-15
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	2e-14
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	5e-14
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	6e-13
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	1e-12
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	7e-12
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	9e-12
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-08
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-08
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-07
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-07
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	9e-07
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-06
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	2e-06
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-06
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	1e-05
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-05
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-05
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	3e-05
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	4e-05
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	4e-05
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-05
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	5e-05
d1f5na2	277	c.37.1.8 (A:7-283) Interferon-induced guanylate-bi	8e-05
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-04
d1ni3a1	296	c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter	5e-04
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-04
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	6e-04
d1kk1a3	195	c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su	7e-04
d1wxqa1	319	c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr	8e-04
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	0.001
d1t9ha2	231	c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C	0.001
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	0.001
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	0.001
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	0.001
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	0.001
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.002
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	0.004

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 80.5 bits (197), Expect = 8e-19
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 9/176 (5%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           VG++G PNAGKSS++  M             T +  +  V    + +  + D PG++   
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
           S     + K         +    VL+ V D           + + +         +   +
Sbjct: 64  S-----EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRP-SL 117

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317
           + +NKVDL+ ++          +       +   S L GAGL AL + L    +  
Sbjct: 118 VALNKVDLLEEEAVKALADALARE---GLAVLPVSALTGAGLPALKEALHALVRST 170

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 78.1 bits (191), Expect = 6e-18
 Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 5/176 (2%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           VG++G P+ GKS++++ +   K         T    +  V T       + D PGL+   
Sbjct: 4   VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                  +  +         +   ++ +  +       D   I            ++ ++
Sbjct: 64  H--QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 121

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317
           +  NK+D+    ++L       + L     +F  S +   GL+ L   +  Q ++ 
Sbjct: 122 IVANKMDMPEAAENLEAFK---EKLTDDYPVFPISAVTREGLRELLFEVANQLENT 174

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 75.9 bits (185), Expect = 4e-17
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 10/182 (5%)

Query: 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDT 194
           +      + I+G PN GKS+++N ++G K++  SRK  TT H ++G+ T+   Q    DT
Sbjct: 1   DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 60

Query: 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA 254
           PG             ++  ++A S++   E+++ V +  R     +         + K  
Sbjct: 61  PG---LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDE-------MVLNKLR 110

Query: 255 PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
             K   +L +NKVD V +K DLL   +       +  I   S   G  +  +   + +  
Sbjct: 111 EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 170

Query: 315 KD 316
            +
Sbjct: 171 PE 172

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 74.6 bits (182), Expect = 6e-17
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 15/172 (8%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           + I+G PN GKS+++N ++    A V+    TT   +   +        I DT G+    
Sbjct: 3   MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 62

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
           +    +     +E     +   ++++ V D    L   D            +   ++ + 
Sbjct: 63  NDLVERLG---IERTLQEIEKADIVLFVLDASSPLDEED------------RKILERIKN 107

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
                V       + +   E    L     +   S LKG GL+ L + +  +
Sbjct: 108 KRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRE 159

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 73.3 bits (178), Expect = 4e-16
 Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 4/173 (2%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V   G  NAGKSS +N +   K  A + KT   T  +         ++      G     
Sbjct: 19  VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVP 78

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                +  +    +    +   + L  +  +            ++IE            +
Sbjct: 79  ----EEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 134

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
              +K+    +K  L  V E      G  ++   S LK  G+  L Q L   F
Sbjct: 135 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 187

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 72.4 bits (176), Expect = 7e-16
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 2/183 (1%)

Query: 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIF 192
           K E   ++ V I+G PN GKS++ N ++  + A VS    TT   V   +     +    
Sbjct: 2   KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 61

Query: 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
           DT GL            K        ++   +V+++V D  + +T  D R+  L+ER G+
Sbjct: 62  DTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGR 121

Query: 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
            +     +   +   +   +  +  K+  +  +   Y  +  TS  KG  +  +   +  
Sbjct: 122 ASVVVFNKWDLVVHRE--KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL 179

Query: 313 QFK 315
            + 
Sbjct: 180 AYA 182

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 69.8 bits (169), Expect = 4e-15
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 15/172 (8%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I G PNAGKSS++N + G + A V+    TT   +   +      + I DT GL    
Sbjct: 4   VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR--- 60

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
              S +  ++ +E AW  +   + ++ + D              +      + P K    
Sbjct: 61  -EASDEVERIGIERAWQEIEQADRVLFMVDGTTT---DAVDPAEIWPEFIARLPAKLPIT 116

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
           +  NK D+  +   + +V            +   S   G G+  L  +L + 
Sbjct: 117 VVRNKADITGETLGMSEV--------NGHALIRLSARTGEGVDVLRNHLKQS 160

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 68.6 bits (166), Expect = 2e-14
 Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 11/182 (6%)

Query: 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDT 194
           E   S  V I+G PN GKS+++N ++G KVA +S +  TT   + G++T+   QI   DT
Sbjct: 1   EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDT 60

Query: 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA 254
           PGL            +      + A+     ++ V D+    T  D  V R ++ +  + 
Sbjct: 61  PGLHKPMDALGEFMDQEV----YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKV 116

Query: 255 PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
           P         NK+D     ++ +K   +           M S L    +  L   L+   
Sbjct: 117 PILL----VGNKLDAAKYPEEAMKAYHELLP---EAEPRMLSALDERQVAELKADLLALM 169

Query: 315 KD 316
            +
Sbjct: 170 PE 171

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 68.3 bits (166), Expect = 5e-14
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 12/165 (7%)

Query: 115 KALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT 174
                A   +  E    +K+ED  S+ + ++G    GKSS +N ++G +V ++S   +  
Sbjct: 8   NTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG 67

Query: 175 THEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234
              V+   ++A   + I DTPGL+  + GY +      ++S      +  +L V      
Sbjct: 68  PRPVMVSRSRAGFTLNIIDTPGLI--EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY 125

Query: 235 HLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLK 278
            + + D  V + I    GK            NK  +         
Sbjct: 126 RVDNLDKLVAKAITDSFGKGI---------WNKAIVALTHAQFSP 161

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 64.0 bits (154), Expect = 6e-13
 Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 12/180 (6%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           V I+G PN GKS++ N +V  K A V  +   T   V   +        + DT G+  N 
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
                + +K    +     +L   ++                                 +
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITK---------EDESLADFLRKSTVDTI 113

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLKI 321
           L  NK + +  ++   +V  +   L G+      S      L  + + ++++ ++ GL +
Sbjct: 114 LVANKAENL--REFEREVKPELYSL-GFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDL 170

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 63.2 bits (152), Expect = 1e-12
 Identities = 26/186 (13%), Positives = 58/186 (31%), Gaps = 16/186 (8%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           +   G  N GKS++I  + G KV    ++   T       +        I D PG     
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKI----IEIEWKNHKIIDMPGFGFMM 57

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP----- 256
                   +++ E      +  + + V   V     +P+                     
Sbjct: 58  GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 117

Query: 257 ---KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERIFMTSGLKGAGLKALTQYL 310
                  ++ +NK+D +   ++++    +   +P     +     S   G  ++ L   +
Sbjct: 118 RELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 177

Query: 311 MEQFKD 316
            E  ++
Sbjct: 178 FEVIRE 183

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (153), Expect = 7e-12
 Identities = 32/226 (14%), Positives = 63/226 (27%), Gaps = 24/226 (10%)

Query: 95  KGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSS 154
               +I  +E        +    +Q       +  +E+   D   + V + G   +GKSS
Sbjct: 15  NTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEI---DSSVLNVAVTGETGSGKSS 71

Query: 155 IINYMVGTKV----AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK 210
            IN + G       AA +     T              +  +D PG+             
Sbjct: 72  FINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGI---------GSTN 121

Query: 211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270
              ++    +  +E    +          D  + + I  M K      +      KVD  
Sbjct: 122 FPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK------EFYFVRTKVDSD 175

Query: 271 TKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK 315
                D        + +    R+   +  +  G+     +L+    
Sbjct: 176 ITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN 221

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 60.9 bits (146), Expect = 9e-12
 Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 11/177 (6%)

Query: 142 VGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200
           + + G  N GKSS IN ++  K +A  S K   T      ++      + +       ++
Sbjct: 26  IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVS 85

Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR 260
           KS        +                 +  V + +    +     ++            
Sbjct: 86  KSEREAWGRMIETYITTR--------EELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPV 137

Query: 261 VLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK 315
           ++   K D + K K     KV  Q  ++   + + + S     G       + +   
Sbjct: 138 IVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 52.0 bits (123), Expect = 1e-08
 Identities = 26/177 (14%), Positives = 64/177 (36%), Gaps = 3/177 (1%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
           +K+  +  +G  NAGK+++++ +   ++       + T+ E+        T         
Sbjct: 11  KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 70

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
             + K+     +  V +        L E    +  +    T  +  ++ L  ++ +    
Sbjct: 71  RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 130

Query: 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
            ++R+  M  +   T  K  + + E          +FM S LK  G     +++ + 
Sbjct: 131 SEERLREMFGLYGQTTGKGSVSLKELNAR---PLEVFMCSVLKRQGYGEGFRWMAQY 184

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.1 bits (118), Expect = 4e-08
 Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 8/171 (4%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           +  +G  NAGK+++++ +   ++A +    + T+ E+     K  T           L K
Sbjct: 3   LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK 62

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
             +   +  +      +    F+   V  D   ++         ++         K    
Sbjct: 63  DYFPEVNG-IVFLVDAADPERFDEARVELDALFNIAELKDVPFVIL-------GNKIDAP 114

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312
             +++ +L +    L     Q         +FM S +   G     Q+L +
Sbjct: 115 NAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.1 bits (113), Expect = 3e-07
 Identities = 25/179 (13%), Positives = 58/179 (32%), Gaps = 11/179 (6%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
           + I G  N+GK+S++  +    V     +    + E L       + + + D PG +  +
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSV-----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLR 60

Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
              S       +++    V     ++      + LT+    ++ ++             +
Sbjct: 61  YKLSD-----YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLK 320
           +  NK +L T  +   K+ +  +             L     K   +   E   D+   
Sbjct: 116 IACNKSELFT-ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 25/180 (13%), Positives = 57/180 (31%), Gaps = 19/180 (10%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           + + + ++G  NAGK++I+    G  V  +S     T    +  +     ++ I+D  G 
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVDTIS----PTLGFNIKTLEHRGFKLNIWDVGGQ 56

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
              +S + +                 + +       +               + ++    
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ-------------SLLVEERLAG 103

Query: 258 QKRVLCMNKVDLVTKK--KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK 315
              ++  NK DL        + +  E       + RI   S + G  L     +L++   
Sbjct: 104 ATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 163

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 47.1 bits (111), Expect = 9e-07
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 15/133 (11%)

Query: 125 QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK 184
           ++ +    K    +++   IIG PN GKS++IN +    +A    +   TT +      K
Sbjct: 98  EKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ---QWVK 154

Query: 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI 244
              ++ + DTPG++  K       +++ V  A            + D   +L       +
Sbjct: 155 VGKELELLDTPGILWPKFEDELVGLRLAVTGA------------IKDSIINLQDVAVFGL 202

Query: 245 RLIERMGKQAPPK 257
           R +E    +   +
Sbjct: 203 RFLEEHYPERLKE 215

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 24/186 (12%), Positives = 61/186 (32%), Gaps = 19/186 (10%)

Query: 130 EEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQI 189
            ++K    + V + ++G  NAGK++++  +    ++ ++         V     K +   
Sbjct: 7   RKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWD 66

Query: 190 CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249
                      +S + + D+ + V  +       E    + ++          V+     
Sbjct: 67  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL----- 121

Query: 250 MGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT 307
                       +  NK DL+T     ++ +            +I   S L G G++   
Sbjct: 122 ------------IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169

Query: 308 QYLMEQ 313
            ++ + 
Sbjct: 170 NWVCKN 175

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 20/179 (11%), Positives = 59/179 (32%), Gaps = 13/179 (7%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVA-----AVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
           V ++G  + GK+++++++ G+ VA      +++    T   +  +       +  F    
Sbjct: 8   VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
            +           +           L ++ +++ D++          + ++         
Sbjct: 68  TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP--- 124

Query: 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK 315
               V+  NK+D +      +     F      + I +   L     + + +   E F+
Sbjct: 125 ---FVVAANKIDRI--HGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFE 178

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 21/170 (12%), Positives = 50/170 (29%), Gaps = 15/170 (8%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
           ++G   AGK++I+  +   ++      T  T    +  +   +    ++D  G    +  
Sbjct: 5   MVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263
           + H     +        N  E +    +            +R++     +          
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREEL----------MRMLAEDELRDAVLLVFANK 110

Query: 264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
            +  + +   +   K+         +  I  T    G GL     +L  Q
Sbjct: 111 QDLPNAMNAAEITDKLGLHSLRHRNWY-IQATCATSGDGLYEGLDWLSNQ 159

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 24/178 (13%), Positives = 63/178 (35%), Gaps = 7/178 (3%)

Query: 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTP 195
           D K++ +GI G  + GK+++   +  T++A+ S        +  G+           +  
Sbjct: 2   DFKNINLGIFGHIDHGKTTLSKVL--TEIASTSAHDKLPESQKRGITIDIGFSAFKLENY 59

Query: 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255
            + L  +      ++       SA ++ ++ ++V D      +     + +++       
Sbjct: 60  RITLVDAPGHADLIRAV----VSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 115

Query: 256 PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
               +       + + + + ++K   Q  H      I   S   G G+  L   ++  
Sbjct: 116 VVITKSDNAGT-EEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITT 172

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 21/189 (11%), Positives = 53/189 (28%), Gaps = 21/189 (11%)

Query: 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200
           AV  +G  ++GK+ +   ++  +       T T+  +   +    + +            
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRD----TQTSITDSSAIYKVNNNRGNSLTLI----- 52

Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL--IERMGKQAPPKQ 258
                     +R +      +    ++ V D              L  +           
Sbjct: 53  ---DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSP 109

Query: 259 KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLM------E 312
             ++  NK D+    K    + +Q +      R+  ++        +     +       
Sbjct: 110 SLLIACNKQDIAM-AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEF 168

Query: 313 QFKDLGLKI 321
           +F  L LK+
Sbjct: 169 EFSQLPLKV 177

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 24/179 (13%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGL----M 198
           +IG    GKS++++     +    S+ T         +       +  I+DT G      
Sbjct: 9   LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR 68

Query: 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ 258
           +  + Y      +                +V+D+ +HLT  +    R ++ +   A    
Sbjct: 69  ITSAYYRGAVGAL----------------LVYDIAKHLTYENVE--RWLKELRDHADSNI 110

Query: 259 KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317
             +L  NK DL   +      A  F           TS L    ++   + ++ +   +
Sbjct: 111 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRI 168

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 37/242 (15%), Positives = 76/242 (31%), Gaps = 34/242 (14%)

Query: 110 HRALAKA--LLQAALERQEEEEEEVKEE----DQKSVAVGIIGAPNAGKSSIINYMV--- 160
              LA+A  L+++   R +    ++ +        ++ +G+ G P AGKS+ +       
Sbjct: 19  RATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 78

Query: 161 ---GTKVAAV-----SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHK---DV 209
              G KVA +     S  T  +       M         F  P       G + +   ++
Sbjct: 79  IREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRAREL 138

Query: 210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL------- 262
            +  E+A   V + E + V           D  +   I   G      +K ++       
Sbjct: 139 MLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIV 198

Query: 263 -----CMNKVDLVTKKKDLLKVAEQFKHLPG--YERIFMTSGLKGAGLKALTQYLMEQFK 315
                  N  ++   +          +        R+   S L+  G+  +   +++   
Sbjct: 199 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 258

Query: 316 DL 317
            L
Sbjct: 259 AL 260

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 21/182 (11%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
            +   V I+G  NAGK++I+      +V      T+ T    +  +   +T+  ++D  G
Sbjct: 13  HQEHKVIIVGLDNAGKTTILYQFSMNEVV----HTSPTIGSNVEEIVINNTRFLMWDIGG 68

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
               +S ++                                        L + +  +   
Sbjct: 69  QESLRSSWNTYYTNTEFVIVVVD-------------STDRERISVTREELYKMLAHEDLR 115

Query: 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER---IFMTSGLKGAGLKALTQYLMEQ 313
           K   ++  NK D+  +   + ++++  K     +    I     L G GL    +++M +
Sbjct: 116 KAGLLIFANKQDVK-ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 174

Query: 314 FK 315
            K
Sbjct: 175 LK 176

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 17/180 (9%), Positives = 43/180 (23%), Gaps = 18/180 (10%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           + + + ++G   +GK++ +N +   +       T       +           I   P  
Sbjct: 1   EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
                 Y      +      +     E                   +             
Sbjct: 61  RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV------------- 107

Query: 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTSGLKGAGLKALTQYLMEQFK 315
              ++  NK DL     +   + +             +  S  +   +    Q+L++  K
Sbjct: 108 ---LVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 21/182 (11%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           + + + I+G   AGK++I+  +   +V             V     K         T   
Sbjct: 4   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
              +  YS+ D  + V  +     +      +  +                    +   K
Sbjct: 64  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-----------------EELRK 106

Query: 258 QKRVLCMNKVDL---VTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314
              V+  NK D+   +T  +    +         ++ IF TS  KG GL    ++L+E  
Sbjct: 107 AILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQ-IFKTSATKGTGLDEAMEWLVETL 165

Query: 315 KD 316
           K 
Sbjct: 166 KS 167

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
            K + + I+G   AGK++I+  +   +V      T  T    +  ++  + ++ ++D  G
Sbjct: 15  NKELRILILGLDGAGKTTILYRLQIGEVV----TTKPTIGFNVETLSYKNLKLNVWDLGG 70

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
               +  +                     ++ V D         +    L   + ++   
Sbjct: 71  QTSIRPYWRCYYADTA------------AVIFVVDSTDK-DRMSTASKELHLMLQEEELQ 117

Query: 257 KQKRVLCMNKVDL---VTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
               ++  NK D    ++  +   ++         +  I  +S +KG G+     +L++ 
Sbjct: 118 DAALLVFANKQDQPGALSASEVSKELNLVELKDRSWS-IVASSAIKGEGITEGLDWLIDV 176

Query: 314 FKD 316
            K+
Sbjct: 177 IKE 179

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 33/182 (18%), Positives = 59/182 (32%), Gaps = 11/182 (6%)

Query: 122 LERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEV-- 178
           L    E  + +    Q  V V I+G    GKS ++N + G K   ++     + T  +  
Sbjct: 15  LMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWM 74

Query: 179 --LGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236
             +    K    + + DT GL          D +        AV L    +       + 
Sbjct: 75  WCVPHPKKPGHILVLLDTEGL----GDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQ 130

Query: 237 TSPD--SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294
            + D    V  L  R+  ++ P +      +  D V+   D +     F      +   +
Sbjct: 131 QAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPL 190

Query: 295 TS 296
           T 
Sbjct: 191 TP 192

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 23/178 (12%), Positives = 53/178 (29%), Gaps = 25/178 (14%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGL----M 198
           +IG    GKS ++   V  K       T     ++  V       ++ I+DT G      
Sbjct: 7   LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 66

Query: 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ 258
           +  + Y                     +++V+D+    T  + +              + 
Sbjct: 67  ITTAYYRGAM----------------GIILVYDITDERTFTNIKQWFKTVNEHANDEAQL 110

Query: 259 KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316
             V   + ++      D  +   +   +P  E    +S      +  +   L +  ++
Sbjct: 111 LLVGNKSDMETRVVTADQGEALAKELGIPFIE----SSAKNDDNVNEIFFTLAKLIQE 164

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 17/77 (22%)

Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD------------ 186
           ++  GI+G PN GKS+    +  + +   +     T       +   D            
Sbjct: 10  NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKP 69

Query: 187 -----TQICIFDTPGLM 198
                  + +FD  GL 
Sbjct: 70  KSRVPAFLTVFDIAGLT 86

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 24/178 (13%), Positives = 51/178 (28%), Gaps = 24/178 (13%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGL----M 198
           +IG    GKS +++  +  K    S  T         +       ++ I+DT G      
Sbjct: 10  VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 69

Query: 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ 258
           + +S Y      + V    S      +   + D     +     ++      G +     
Sbjct: 70  VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL-----CGNKKDLDA 124

Query: 259 KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316
            R +   +     ++ +L                  TS L G  ++        +  +
Sbjct: 125 DREVTFLEASRFAQENEL--------------MFLETSALTGENVEEAFVQCARKILN 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 24/185 (12%)

Query: 134 EEDQKSVAVGIIGAPNAGKSSIIN-YMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIF 192
           E+   ++ + IIG    GKSS++  +   T    ++             +     ++ I+
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 193 DTPGL----MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248
           DT G      L  S Y      + V          ++   + ++  + T  D   +    
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM---- 117

Query: 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ 308
            +      K+ R +  N+     +K  +L                  S     G++   +
Sbjct: 118 -LVGNKIDKENREVDRNEGLKFARKHSML--------------FIEASAKTCDGVQCAFE 162

Query: 309 YLMEQ 313
            L+E+
Sbjct: 163 ELVEK 167

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 24/190 (12%), Positives = 62/190 (32%), Gaps = 15/190 (7%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGT---KVAAVSRKTNTTTHEVLGVMTKADTQICIFD 193
           Q  V +G++G  + GK+++   + G      +   R+  T          +       + 
Sbjct: 3   QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYS 62

Query: 194 TPGLMLNKSGYSHKDVKV----------RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRV 243
           T  +       +    +V           + +  +  +L +  ++V   +     P +R 
Sbjct: 63  TSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE 122

Query: 244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM-TSGLKGAG 302
             +  ++  Q          +  VD     ++  ++ E  +         +  S L GA 
Sbjct: 123 HLMALQIIGQ-KNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGAN 181

Query: 303 LKALTQYLME 312
           +  L + + +
Sbjct: 182 IDVLVKAIED 191

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 25/173 (14%), Positives = 42/173 (24%), Gaps = 28/173 (16%)

Query: 142 VGIIGAPNAGKSSIINYMVGTKVAA-------------VSRKTNTTTHEVLGVMTK---- 184
           +G++G PN GKS+  +      V               V+        + LG        
Sbjct: 3   IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNY 62

Query: 185 ------ADTQICIFDTPGLMLNKS-----GYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233
                 A   + + D  GL+         G    D      +    V+            
Sbjct: 63  EYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPT 122

Query: 234 RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286
            +    +       E          K      K   + K K    +AE    +
Sbjct: 123 DYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGI 175

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 24/173 (13%), Positives = 59/173 (34%), Gaps = 16/173 (9%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKS 202
           +IG    GK+ ++         +    T     ++  +       ++ I+DT G      
Sbjct: 11  LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG------ 64

Query: 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262
               +  +    + +        +M+V+D+    +     +   I  + + A    ++++
Sbjct: 65  ---QERFRTITTAYYRGAM---GIMLVYDITNEKSFD--NIRNWIRNIEEHASADVEKMI 116

Query: 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK 315
             NK D+  K++   +  E+     G  +   TS      ++     L    K
Sbjct: 117 LGNKCDVNDKRQVSKERGEKLALDYGI-KFMETSAKANINVENAFFTLARDIK 168

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 97  KLRIFQEEEEERKHRALAKALLQA-----ALERQEEEEEEVKEEDQKSVAVGIIGAPNAG 151
           K+ + ++++ E   +A A+              ++++         +       G    G
Sbjct: 50  KMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVG 109

Query: 152 KSSIINYMVGT---KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           KSS++N +      +   +S       H    V     +   + DTPG 
Sbjct: 110 KSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGF 158

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 16/174 (9%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKS 202
           IIG  + GK+S +              T     +V  +       ++ I+DT G      
Sbjct: 10  IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG------ 63

Query: 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262
               +   +       A       ++++D+        + V     ++   +    + +L
Sbjct: 64  --QERYRTITTAYYRGA----MGFILMYDITNE--ESFNAVQDWSTQIKTYSWDNAQVLL 115

Query: 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316
             NK D+  ++    +   Q     G+E  F  S      +K   + L++   +
Sbjct: 116 VGNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 168

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 22/188 (11%), Positives = 51/188 (27%), Gaps = 26/188 (13%)

Query: 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
           +++   ++G    GK+ ++              TN    E +  +    +   + D   +
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYT----------TNAFPGEYIPTVFDNYSANVMVDGKPV 53

Query: 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
            L     + ++   R+           ++           +  ++    +       P  
Sbjct: 54  NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-- 111

Query: 258 QKRVLCMNKVDLVTKKKDLLK------------VAEQFKHLPGYERIFMTSGLKGAGLKA 305
              +L   K+DL   K  + K                     G  +    S L   GLK 
Sbjct: 112 --IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 169

Query: 306 LTQYLMEQ 313
           +    +  
Sbjct: 170 VFDEAIRA 177

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 38/247 (15%), Positives = 73/247 (29%), Gaps = 43/247 (17%)

Query: 110 HRALAKAL------LQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIIN------ 157
             ALA+A+               +  + V  +  +++ VGI G P  GKS+ I+      
Sbjct: 16  RAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 75

Query: 158 YMVGTKVAAVSRKTNTT-------THEVLGVMTKADTQICIFDTPGLMLNKSGYS----H 206
              G KVA ++   ++T         +        D    I  +P         +     
Sbjct: 76  TAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRET 135

Query: 207 KDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQK 259
             +          V    V      V          +       ++ I++   +      
Sbjct: 136 MLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELA---- 191

Query: 260 RVLCMNKVDLVTKKKDLLKVAEQF---------KHLPGYERIFMTSGLKGAGLKALTQYL 310
            ++ +NK D    ++     A ++                 +   SGL G GL +L   +
Sbjct: 192 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRI 251

Query: 311 MEQFKDL 317
            +    L
Sbjct: 252 EDHRSKL 258

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 30/198 (15%), Positives = 60/198 (30%), Gaps = 18/198 (9%)

Query: 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTP 195
            Q  V +G++G  + GK++++  + G   +  S +        LG              P
Sbjct: 5   VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKP 64

Query: 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255
              + +            +       +      V        +       L+    +  P
Sbjct: 65  EAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP 124

Query: 256 PKQKRV--------------LCMNKVDLVTKKKDLLKVAEQFKHLPGYE----RIFMTSG 297
             Q R               +  NKVD+V+K++ L +  +  +   G       I   S 
Sbjct: 125 QPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 184

Query: 298 LKGAGLKALTQYLMEQFK 315
           L    + +L + + E  K
Sbjct: 185 LHKINIDSLIEGIEEYIK 202

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 21/182 (11%)

Query: 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
            K + + ++G   AGK++I+  +   +    S  T  T    +  +T  + +  ++D  G
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTYKNVKFNVWDVGG 65

Query: 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256
               +  +                   + L+ V D        ++R   L   +  +   
Sbjct: 66  QDKIRPLW------------RHYYTGTQGLIFVVDCADRDRIDEARQE-LHRIINDREMR 112

Query: 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER---IFMTSGLKGAGLKALTQYLMEQ 313
               ++  NK DL        ++ E+       +R   +  +    G GL     +L   
Sbjct: 113 DAIILIFANKQDL-PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 171

Query: 314 FK 315
           +K
Sbjct: 172 YK 173

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPG 196
           +IG    GK+ ++              T      +  V    +  ++ I+DT G
Sbjct: 10  LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.91
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.91
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.9
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.9
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.9
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.9
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.9
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.89
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.89
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.89
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.89
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.89
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.89
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.89
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.88
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.88
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.88
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.88
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.88
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.88
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.87
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.87
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.86
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.86
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.86
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.86
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.85
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.84
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.81
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.81
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.79
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.79
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.78
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.77
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.74
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.69
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.69
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.68
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.67
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.67
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.66
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.65
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.64
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.59
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.56
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.56
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.55
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.53
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.52
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.52
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.52
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.51
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.5
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.5
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.36
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.23
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.17
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.12
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.12
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.03
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.6
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.53
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.5
d1okkd2	207	GTPase domain of the signal recognition particle r	98.47
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.46
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.33
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.17
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.02
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.69
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.57
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.48
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.4
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.18
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.08
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.98
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.95
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.92
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.78
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.74
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.71
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.62
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.59
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.54
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.52
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.52
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.5
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.45
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.44
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.39
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.28
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.25
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.19
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.19
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.19
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.18
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.18
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.15
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.14
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.13
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.13
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.13
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.13
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.11
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.08
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.08
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.07
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.06
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.06
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.04
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.03
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.0
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.93
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.92
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.9
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.87
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.84
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.84
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.83
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.83
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.82
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.81
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.77
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.73
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.72
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.72
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.68
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.66
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.65
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.64
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.58
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.57
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.57
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.57
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.55
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.54
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.5
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.44
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.44
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.37
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.37
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.34
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.31
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.3
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.1
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.94
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.94
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.81
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.79
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.69
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.11
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.1
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.01
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.97
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.94
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.67
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.65
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.55
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.48
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.47
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.37
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.34
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.07
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	92.93
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.82
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.63
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	92.55
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.49
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.16
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	92.14
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.07
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	91.78
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	91.55
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.44
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.42
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	91.33
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.25
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	91.22
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.21
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.19
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.13
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	91.09
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.88
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	90.78
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	90.66
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	90.59
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	89.97
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	89.47
d1tuea_	205	Replication protein E1 helicase domain {Human papi	89.4
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	89.36
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	89.17
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	88.94
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	88.93
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	88.82
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	88.66
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	88.66
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	88.46
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	88.42
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	88.19
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.16
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	87.81
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	87.49
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	87.22
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	87.07
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	86.53
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	85.95
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	85.9
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	84.24
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	84.04
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	83.39
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	81.51
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	81.05
d1xpua3	289	Transcription termination factor Rho, ATPase domai	80.83

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=9.9e-27  Score=192.02  Aligned_cols=169  Identities=26%  Similarity=0.330  Sum_probs=131.1

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      ...|+|+|.+|||||||+|+|++.+...++..+++|...........+..+.++||||+.....    .........++.
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~----~~~~~~~~~~~~   80 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD----ALGEFMDQEVYE   80 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS----HHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeeccccccccccc----ccchhccccccc
Confidence            3469999999999999999999998888888999998888877778888999999999975433    222334455666


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      .+..||++++|+|++.+....+..+..+++...    .+.|+++|+||+|+....+   +....+.+..+...++++||+
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~----~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~iSA~  153 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLV----GKVPILLVGNKLDAAKYPE---EAMKAYHELLPEAEPRMLSAL  153 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT----TTSCEEEEEECGGGCSSHH---HHHHHHHHTSTTSEEEECCTT
T ss_pred             ccccccceeeeechhhhhcccccchhhheeccc----cchhhhhhhcccccccCHH---HHHHHHHhhcccCceEEEecC
Confidence            788999999999998765554444444444322    3578999999999977543   233455555666679999999


Q ss_pred             CCCCHHHHHHHHHHHhhhcC
Q 020714          299 KGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~~~~  318 (322)
                      +|.||++|+++|.+.+.+..
T Consensus       154 ~~~gi~~L~~~i~~~lpe~p  173 (178)
T d1wf3a1         154 DERQVAELKADLLALMPEGP  173 (178)
T ss_dssp             CHHHHHHHHHHHHTTCCBCC
T ss_pred             CCCCHHHHHHHHHHhCCCCC
Confidence            99999999999999887643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.7e-25  Score=181.09  Aligned_cols=160  Identities=23%  Similarity=0.335  Sum_probs=124.6

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +++|+++|.||||||||+|+|++.+...+...++++.......+...+..+.++||||+.....    ......+..+..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~~~~~~~~~~~~   76 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD----EVERIGIERAWQ   76 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS----HHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccc----cchhHHHHHHHH
Confidence            5799999999999999999999998887888899998888877778888999999999976433    334455666777


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      .+..+|++++++|.+........... ..+....    ...|+++|+||+|+......       +.+. ...+++++||
T Consensus        77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~iilv~NK~Dl~~~~~~-------~~~~-~~~~~~~iSA  144 (161)
T d2gj8a1          77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP----AKLPITVVRNKADITGETLG-------MSEV-NGHALIRLSA  144 (161)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC----TTCCEEEEEECHHHHCCCCE-------EEEE-TTEEEEECCT
T ss_pred             HHHhccccceeeccccccchhhhhhhhhhhhhcc----cccceeeccchhhhhhhHHH-------HHHh-CCCcEEEEEC
Confidence            78899999999999877665554332 2333332    35789999999998764322       1122 2336999999


Q ss_pred             CCCCCHHHHHHHHHHHh
Q 020714          298 LKGAGLKALTQYLMEQF  314 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l  314 (322)
                      ++|+||++|+++|.+.+
T Consensus       145 k~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         145 RTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTCTTHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            99999999999998864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=8.1e-25  Score=181.39  Aligned_cols=178  Identities=23%  Similarity=0.292  Sum_probs=120.0

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      +.....++|+++|.+|||||||+|+|++.+...++..+++|...........+..+.++||||+................
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   82 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSN   82 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCC
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchh
Confidence            44556899999999999999999999998888888888888887776677788899999999986433211111111122


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH-HHHH---HHHHhcCCCC
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-LLKV---AEQFKHLPGY  289 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~-~~~~---~~~~~~~~~~  289 (322)
                      ..+...+..+|++++|+|++.+...+...+..++...      +.|+|+|+||+|+...... ..+.   ..........
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~------~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR------GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY  156 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT------TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT
T ss_pred             HHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHc------CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCC
Confidence            3344556778999999999876655554554444442      3579999999999765432 2222   2222222345


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          290 ERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      .+++++||++|.|+++|+++|.+.+..+
T Consensus       157 ~~i~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         157 SPLIFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            5799999999999999999999888764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.1e-24  Score=178.06  Aligned_cols=163  Identities=13%  Similarity=0.142  Sum_probs=112.5

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      -+||+++|.+|||||||++++.+..+... .+..+.+..............+.+|||||...+.      .    .  .-
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~------~----~--~~   72 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYR------T----I--TT   72 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH------H----H--HH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhH------H----H--HH
Confidence            47999999999999999999987765432 2333333333322222223568899999976431      1    1  11


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++|+|||+++..+.  .....+...+.....+..|+++|+||+|+........+....+++..+. ++++|||
T Consensus        73 ~~~~~ad~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~e~Sa  149 (169)
T d3raba_          73 AYYRGAMGFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEASA  149 (169)
T ss_dssp             TTTTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBT
T ss_pred             HHHhcCCEEEEEEECccchhh--hhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCC-EEEEecC
Confidence            357889999999999664222  2333444444444455788999999999876544444445556555566 6999999


Q ss_pred             CCCCCHHHHHHHHHHHhhh
Q 020714          298 LKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~  316 (322)
                      ++|.||+++|++|.+.+.+
T Consensus       150 k~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         150 KDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             TTTBSHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHhh
Confidence            9999999999999998865

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=6.9e-24  Score=173.54  Aligned_cols=167  Identities=21%  Similarity=0.304  Sum_probs=114.2

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|.+|||||||+|+|++.+...++..+++|.......+...+..+.++||||+..........   .....++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---~~~~~~~~~~   78 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQ---KMKEVTLNMI   78 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCH---HHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeecccccc---cccccccccc
Confidence            5899999999999999999998887788888988887777777788889999999987654322222   2233455567


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      ..+|++++++|.+.+....+..+..++...      ++|+++|+||+|+...  ...+....+... +..+++++||++|
T Consensus        79 ~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~------~~pviiv~NK~Dl~~~--~~~~~~~~~~~~-~~~~~i~iSAk~g  149 (171)
T d1mkya1          79 READLVLFVVDGKRGITKEDESLADFLRKS------TVDTILVANKAENLRE--FEREVKPELYSL-GFGEPIPVSAEHN  149 (171)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHHH------TCCEEEEEESCCSHHH--HHHHTHHHHGGG-SSCSCEECBTTTT
T ss_pred             ccCcEEEEeecccccccccccccccccccc------cccccccchhhhhhhh--hhhHHHHHHHhc-CCCCeEEEecCCC
Confidence            889999999999877666555555555543      3579999999998642  222333334333 3446899999999


Q ss_pred             CCHHHHHHHHHHHhhhcCC
Q 020714          301 AGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       301 ~gi~el~~~i~~~l~~~~~  319 (322)
                      .||++|+++|.+.+.+...
T Consensus       150 ~gid~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         150 INLDTMLETIIKKLEEKGL  168 (171)
T ss_dssp             BSHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhCCCCCC
Confidence            9999999999999987654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-24  Score=177.37  Aligned_cols=165  Identities=15%  Similarity=0.130  Sum_probs=114.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...+||+++|.+|||||||++++....+.....  .+..+.....+..++  ..+.+|||+|...+....          
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~--~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~----------   71 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD--PTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR----------   71 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCC--TTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCH----------
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccc--cccccceeeEeccCCeeeeeecccccccccccccc----------
Confidence            457899999999999999999998776543222  222222222333343  467789999998654311          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                        ...+..+|++++|||+++..+.  ..+..|...+.. ....+.|+++|+||+|+...+.........++..++. +++
T Consensus        72 --~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~  146 (173)
T d2fn4a1          72 --EQYMRAGHGFLLVFAINDRQSF--NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV-AYF  146 (173)
T ss_dssp             --HHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEE
T ss_pred             --chhhccceeeeeeccccccccc--chhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCC-EEE
Confidence              1234667999999999764333  234455554432 2334678999999999976544444556666666666 599


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      +|||++|.||+++|+.|++.+.+.+
T Consensus       147 e~Sak~g~gv~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         147 EASAKLRLNVDEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EEeCCCCcCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999987653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.8e-24  Score=174.80  Aligned_cols=159  Identities=21%  Similarity=0.369  Sum_probs=119.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      ++|+++|.||||||||+|+|++.+...++..+++|...........+..+.++||||+...........   ++..++..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~---~~~~~~~~   77 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERL---GIERTLQE   77 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCC---CHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHH---HHHHHHHH
Confidence            589999999999999999999988888888899888877777778888999999999865443222111   23455666


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      +..+|++++|+|++++...++..+...   +.     ..++++++||+|+..... .++....+.   ...+++++||++
T Consensus        78 ~~~ad~ii~v~d~~~~~~~~~~~~~~~---~~-----~~~~i~~~~k~d~~~~~~-~~~~~~~~~---~~~~~~~vSA~~  145 (160)
T d1xzpa2          78 IEKADIVLFVLDASSPLDEEDRKILER---IK-----NKRYLVVINKVDVVEKIN-EEEIKNKLG---TDRHMVKISALK  145 (160)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHHHHHH---HT-----TSSEEEEEEECSSCCCCC-HHHHHHHHT---CSTTEEEEEGGG
T ss_pred             HHhCCEEEEEEeCCCCcchhhhhhhhh---cc-----cccceeeeeeccccchhh-hHHHHHHhC---CCCcEEEEECCC
Confidence            788899999999987665544333222   22     346999999999987533 333333333   234799999999


Q ss_pred             CCCHHHHHHHHHHH
Q 020714          300 GAGLKALTQYLMEQ  313 (322)
Q Consensus       300 g~gi~el~~~i~~~  313 (322)
                      |+||++|+++|.+.
T Consensus       146 g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         146 GEGLEKLEESIYRE  159 (160)
T ss_dssp             TCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999763

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.7e-24  Score=175.61  Aligned_cols=160  Identities=15%  Similarity=0.165  Sum_probs=103.7

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +||+++|.+|||||||++++.+..........+.+.   ...+..+  ...+.+|||||...+..          +  ..
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~l~i~D~~g~e~~~~----------~--~~   66 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY---DRSIVVDGEEASLMVYDIWEQDGGRW----------L--PG   66 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEE---EEEEEETTEEEEEEEEECC-----------------C--HH
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeee---cceeeccccccceeeeecccccccce----------e--cc
Confidence            789999999999999999999876543332222222   1222233  35778999999865422          0  11


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ..+..+|++++|||+++..+.  ..+..|+..+... .....|+++|+||+|+.....+.......++..++. ++++||
T Consensus        67 ~~~~~~d~~ilv~d~t~~~s~--~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S  143 (168)
T d2gjsa1          67 HCMAMGDAYVIVYSVTDKGSF--EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC-KFIETS  143 (168)
T ss_dssp             HHHTSCSEEEEEEETTCHHHH--HHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTS-EEEECB
T ss_pred             cchhhhhhhceeccccccccc--cccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCC-EEEEEe
Confidence            346789999999999764332  3455566555432 334678999999999976544444455666666666 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhhc
Q 020714          297 GLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~~  317 (322)
                      |++|.||+++|++|.+.+..+
T Consensus       144 ak~~~~v~~~f~~l~~~i~~~  164 (168)
T d2gjsa1         144 AALHHNVQALFEGVVRQIRLR  164 (168)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHH
Confidence            999999999999999877653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.8e-24  Score=174.77  Aligned_cols=161  Identities=17%  Similarity=0.159  Sum_probs=112.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .+||+++|.+|||||||+|++.+..+.. ..+..+.+..............+.+|||+|...+.....            
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~------------   69 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITK------------   69 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCH------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhh------------
Confidence            4789999999999999999999765432 223333333333222222235678999999887654221            


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|+|+++..+.  ..+..|+..+... .++.|+++|+||+|+...+....+....+++..+. ++++|||
T Consensus        70 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~-~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa  145 (164)
T d1z2aa1          70 AYYRGAQACVLVFSTTDRESF--EAISSWREKVVAE-VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRTSV  145 (164)
T ss_dssp             HHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHH-HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEECBT
T ss_pred             hhhccCceEEEEEeccchhhh--hhccccccccccc-CCCceEEEeeccCCcccceeeeehhhHHHHHHcCC-EEEEecc
Confidence            235788999999999764433  2355566665432 23678999999999976554444445666666666 6999999


Q ss_pred             CCCCCHHHHHHHHHHHhh
Q 020714          298 LKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~  315 (322)
                      ++|.||+++|++|.+.+.
T Consensus       146 k~g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         146 KEDLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             TTTBSSHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHh
Confidence            999999999999998775

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.6e-24  Score=173.98  Aligned_cols=160  Identities=17%  Similarity=0.168  Sum_probs=112.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +||+++|.+|||||||+|++.+.++..... +..+...........  ...+.+|||+|...+..            ...
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------------~~~   67 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQ-ATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRS------------LIP   67 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCC-CCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGG------------GHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccc-cceeeeccceeeccCCCceeeeecccCCcchhcc------------chH
Confidence            589999999999999999999876543322 222222222222233  35678999999875422            111


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|+|+++..+.  ..+..|+..+.....++.|+++|+||+|+........+....++...+. ++++|||
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~--~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~SA  144 (164)
T d1yzqa1          68 SYIRDSAAAVVVYDITNVNSF--QQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNV-MFIETSA  144 (164)
T ss_dssp             HHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCT
T ss_pred             HHhhccceEEEeeccccccch--hhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCC-EEEEecC
Confidence            346788999999999764333  2345555555444445788999999999976555444556666666666 5999999


Q ss_pred             CCCCCHHHHHHHHHHHhh
Q 020714          298 LKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~  315 (322)
                      ++|.||+++|++|.+++.
T Consensus       145 k~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         145 KAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             TTCTTHHHHHHHHHHHSC
T ss_pred             CCCcCHHHHHHHHHHhhC
Confidence            999999999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.90  E-value=3.7e-23  Score=170.87  Aligned_cols=164  Identities=14%  Similarity=0.182  Sum_probs=113.8

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...+.++|+++|.+|||||||++++.+.......++.+....    .....+..+.+||+||...+....          
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~----------   78 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTSIRPYW----------   78 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE----EEEETTEEEEEEEEC----CCTTG----------
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEE----EEeeCCEEEEEEecccccccchhH----------
Confidence            345689999999999999999999998887766555544332    234567889999999987653311          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCC
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGY  289 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~  289 (322)
                        ...+..+|++++|+|+++..+..  ....++.. +......+.|+++|+||+|+..... ..+....+.    ...+ 
T Consensus        79 --~~~~~~~~~ii~v~d~~d~~s~~--~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~-  152 (182)
T d1moza_          79 --RCYYADTAAVIFVVDSTDKDRMS--TASKELHLMLQEEELQDAALLVFANKQDQPGALS-ASEVSKELNLVELKDRS-  152 (182)
T ss_dssp             --GGTTTTEEEEEEEEETTCTTTHH--HHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC-HHHHHHHTTTTTCCSSC-
T ss_pred             --HhhhccceeEEEEeeecccccch--hHHHHHHHHHHhhccCCcceEEEEEeeccccccC-HHHHHHHHHHHHHhhCC-
Confidence              13467889999999997754432  34444444 4444555789999999999976422 222222221    1122 


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714          290 ERIFMTSGLKGAGLKALTQYLMEQFKDLG  318 (322)
Q Consensus       290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~~  318 (322)
                      .++++|||++|+||+++++||.+.+.+++
T Consensus       153 ~~~~e~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         153 WSIVASSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             EEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            25899999999999999999999998764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=1e-24  Score=191.85  Aligned_cols=154  Identities=24%  Similarity=0.377  Sum_probs=110.7

Q ss_pred             HHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCChhhHHHHHHhhCCeEEEee
Q 020714           29 RFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQEPTWDEKYRERTDRIVFGE   91 (322)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~   91 (322)
                      ||+++..+..+  .++.+|+|++++|||+|+++ +                ||+||++++..++|..||...+...++.+
T Consensus         1 Hm~ka~r~i~~--~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~is   78 (273)
T d1puja_           1 HMAKARREVTE--KLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSIN   78 (273)
T ss_dssp             CTTHHHHHHHH--HGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CHHHHHHHHHH--HHHhCCEEEEEEECCCCCCCCCHHHHHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceee
Confidence            67777777655  66689999999999999999 6                79999999999999999999988888888


Q ss_pred             c-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCC
Q 020714           92 E-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK  170 (322)
Q Consensus        92 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~  170 (322)
                      + ...+..++.          .....++....+..     ..+......++|+|+|.||||||||+|+|.+.+.+.+++.
T Consensus        79 a~~~~~~~~~~----------~~~~~~l~~~~~~~-----~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~  143 (273)
T d1puja_          79 SVNGQGLNQIV----------PASKEILQEKFDRM-----RAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR  143 (273)
T ss_dssp             TTTCTTGGGHH----------HHHHHHHHHHHHHH-----HHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-----
T ss_pred             cccCCCccccc----------hhhhhhhhhhhhhh-----hhccCCCCceEEEEEecCccchhhhhhhhhccceEEECCc
Confidence            8 666666662          22222222222211     1234456789999999999999999999999999999999


Q ss_pred             CCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714          171 TNTTTHEVLGVMTKADTQICIFDTPGLMLNKS  202 (322)
Q Consensus       171 ~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~  202 (322)
                      ||+|++.+..   ..+..+.++||||+..+..
T Consensus       144 pG~Tr~~~~i---~~~~~~~l~DTPGi~~p~~  172 (273)
T d1puja_         144 PGITTSQQWV---KVGKELELLDTPGILWPKF  172 (273)
T ss_dssp             -------CCE---EETTTEEEEECCCCCCSCC
T ss_pred             ccccccceEE---ECCCCeEEecCCCccccCC
Confidence            9999987653   3467899999999987654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.90  E-value=3.1e-23  Score=168.49  Aligned_cols=160  Identities=18%  Similarity=0.167  Sum_probs=109.5

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .+||+++|.+|||||||+|+|.+.......++.    ......+...+..+.+|||||...+..            ....
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~D~~G~~~~~~------------~~~~   65 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTL----GFNIKTLEHRGFKLNIWDVGGQKSLRS------------YWRN   65 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCS----SEEEEEEEETTEEEEEEEECCSHHHHT------------TGGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcccceE----eeeeeeccccccceeeeecCcchhhhh------------HHHh
Confidence            578999999999999999999988765443333    333334556788999999999753211            1224


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH--hcC-CCCCcEEEe
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHL-PGYERIFMT  295 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~--~~~-~~~~~~~~i  295 (322)
                      .+..++++++++|+++..+..+ ....+...+......+.|+++|+||+|+.......+. ...+  ... ....++++|
T Consensus        66 ~~~~~~~~i~v~d~~d~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  143 (165)
T d1ksha_          66 YFESTDGLIWVVDSADRQRMQD-CQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAI-QEALELDSIRSHHWRIQGC  143 (165)
T ss_dssp             GCTTCSEEEEEEETTCGGGHHH-HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHH-HHHTTGGGCCSSCEEEEEC
T ss_pred             hhhhhhcceeeeecccchhHHH-HHHhhhhhhhhcccCCCceEEEEeccccccccCHHHH-HHHHHhhhhhcCCCEEEEE
Confidence            5688899999999976433322 2223334444444557899999999999765432222 2221  111 112258999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      ||++|+|++++++||.+++..
T Consensus       144 Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         144 SAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHHHc
Confidence            999999999999999988764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.8e-24  Score=175.00  Aligned_cols=164  Identities=18%  Similarity=0.140  Sum_probs=109.6

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+||+++|.+|||||||++++++..+..  ....|...........++  ..+.+|||+|...+..            ..
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~--~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~------------~~   67 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRE--SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPA------------MQ   67 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCS--SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHH------------HH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCC--ccCcceeeccccceeeccccceeccccccccccccc------------cc
Confidence            4799999999999999999999876542  112222222222233344  4567899999875411            11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc--cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK--QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~--~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ...+..+|++++|||+++..+...  +..|...+..  ....+.|+++|+||+|+...+....+....+++.+++ ++++
T Consensus        68 ~~~~~~a~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~-~~~e  144 (171)
T d2erxa1          68 RLSISKGHAFILVYSITSRQSLEE--LKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC-AFME  144 (171)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHT--THHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             cccccceeEEEEEeecccccchhc--ccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCC-eEEE
Confidence            234567899999999976433322  3333333221  1234688999999999976544444455666666666 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                      |||++|.||+++|+.|.+.+.++.+
T Consensus       145 ~Sak~~~~v~e~f~~l~~~~~~~~~  169 (171)
T d2erxa1         145 TSAKLNHNVKELFQELLNLEKRRTV  169 (171)
T ss_dssp             CBTTTTBSHHHHHHHHHHTCCSSCE
T ss_pred             EcCCCCcCHHHHHHHHHHHHHHhhC
Confidence            9999999999999999998876543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=9.7e-24  Score=174.09  Aligned_cols=168  Identities=23%  Similarity=0.297  Sum_probs=111.7

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      .|+++|.||||||||+|+|++..........+++...........+..+.+|||||+......     .......++..+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~-----~~~~~~~~l~~~   77 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE-----GKGLGLEFLRHI   77 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG-----SCCSCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchH-----HHHHHHHHHHHH
Confidence            389999999999999999999876544444444443333334445678999999998643221     111233555677


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG  300 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g  300 (322)
                      ..++++++++|..............++...... ..++|+++|+||+|+.... ......+.+.. .+. +++++||++|
T Consensus        78 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~-~~~~~~~~~~~-~~~-~~~~iSA~tg  153 (180)
T d1udxa2          78 ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEE-AVKALADALAR-EGL-AVLPVSALTG  153 (180)
T ss_dssp             TSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHH-HHHHHHHHHHT-TTS-CEEECCTTTC
T ss_pred             Hhhhhhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHH-HHHHHHHHHHh-cCC-eEEEEEcCCC
Confidence            888999999998643222222333333332211 1236799999999998753 33343444433 343 6999999999


Q ss_pred             CCHHHHHHHHHHHhhhc
Q 020714          301 AGLKALTQYLMEQFKDL  317 (322)
Q Consensus       301 ~gi~el~~~i~~~l~~~  317 (322)
                      +|+++|++.|.+.+...
T Consensus       154 ~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         154 AGLPALKEALHALVRST  170 (180)
T ss_dssp             TTHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHhhc
Confidence            99999999999988653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-23  Score=171.14  Aligned_cols=160  Identities=19%  Similarity=0.193  Sum_probs=111.6

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+||+++|.+|||||||++++.++.+..... +..+...........+  ..+.+|||||...+..      ...     
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------~~~-----   71 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCP-HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA------VTR-----   71 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCT-TSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH------HHH-----
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccc-ccccccceeEEEEECCEEEEEEEeccCCchhHHH------HHH-----
Confidence            4799999999999999999999876554332 2222222222233333  4788999999875421      111     


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                       ..+..+|++++|+|+++..+.  ..+..+...+........|+++|+||+|+........+....+++..+. ++++||
T Consensus        72 -~~~~~~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S  147 (166)
T d1z0fa1          72 -SYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL-LFLEAS  147 (166)
T ss_dssp             -HHHHTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECC
T ss_pred             -HHhcCCcEEEEEeccCchHHH--HHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCC-EEEEEe
Confidence             235678999999999764332  2344455555544555788999999999976555444555666666666 699999


Q ss_pred             cCCCCCHHHHHHHHHHHh
Q 020714          297 GLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l  314 (322)
                      |++|.||+++|++|.+.+
T Consensus       148 aktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         148 AKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999999876

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7e-24  Score=173.55  Aligned_cols=163  Identities=16%  Similarity=0.178  Sum_probs=111.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+||+++|.+|||||||++++.++.+... ..+..+.......+...+  ..+.+|||||...+.      .      -.
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~------~------~~   71 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR------S------IT   71 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTT-CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH------H------HH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc-ccccccceEEEEEEEECCEEEEEEEEECCCchhhH------H------HH
Confidence            48999999999999999999998765432 222233332222233333  457899999976431      1      11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      -..+..+|++++|+|.++..+.  .....+...+........|+++|+||+|+........+....+++..++ ++++||
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~S  148 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEESF--RCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM-YYLETS  148 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-CEEECC
T ss_pred             HHHHhccceEEEeeecccchhh--hhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCC-EEEEEc
Confidence            1356889999999999764332  2344455544444445688999999999876544434445556665666 599999


Q ss_pred             cCCCCCHHHHHHHHHHHhhhc
Q 020714          297 GLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~~  317 (322)
                      |++|.||+++|.+|.+.+...
T Consensus       149 Aktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         149 AKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999988777653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.90  E-value=3.9e-23  Score=169.56  Aligned_cols=161  Identities=15%  Similarity=0.196  Sum_probs=111.6

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV  213 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  213 (322)
                      ....+.+||+++|.+|||||||+|+|.+..+..+....+.+..    .+...+..+.+||++|...+.            
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~----~i~~~~~~~~i~d~~g~~~~~------------   74 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQRKIR------------   74 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE----EEEETTEEEEEEECSSCGGGH------------
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEE----EeccCCeeEeEeeccccccch------------
Confidence            4455679999999999999999999999887666555554432    234567889999999986431            


Q ss_pred             HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH----hcCCC
Q 020714          214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF----KHLPG  288 (322)
Q Consensus       214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~----~~~~~  288 (322)
                      ......+..+|++++|+|+++..+..  ....++..+. .....+.|+++|+||+|+...... ....+.+    .... 
T Consensus        75 ~~~~~~~~~~~~ii~v~d~~d~~s~~--~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~-  150 (176)
T d1fzqa_          75 PYWRSYFENTDILIYVIDSADRKRFE--ETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA-SEIAEGLNLHTIRDR-  150 (176)
T ss_dssp             HHHHHHHTTCSEEEEEEETTCGGGHH--HHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH-HHHHHHTTGGGCCSS-
T ss_pred             hHHHHHhhccceeEEeeccccccchh--hhhhhhhhhhhhhccCCCeEEEEEEeccccccccH-HHHHHHHHHHHHHhc-
Confidence            11224568889999999997654332  3334443333 333446899999999999865321 1222221    1222 


Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          289 YERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       289 ~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      ..++++|||++|+|++++|+||.+.+
T Consensus       151 ~~~~~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         151 VWQIQSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             CEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence            23689999999999999999998753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=8.3e-24  Score=172.44  Aligned_cols=163  Identities=17%  Similarity=0.178  Sum_probs=113.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      +.+||+++|.+|||||||+++|....+.... +..+.+..............+.+|||+|...+...            .
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------------~   70 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL------------A   70 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG------------T
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHH------------H
Confidence            4689999999999999999999987654322 22222222222111122345679999998764321            1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      ...+..+|++++|||+++..+.  ..+..|...+.....+..|+++|+||+|+.+.+....+....+++..++ ++++||
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S  147 (167)
T d1z0ja1          71 PMYYRGSAAAIIVYDITKEETF--STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA-IFVETS  147 (167)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECB
T ss_pred             HHHHhhccceEEEeeechhhhh--hhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCC-EEEEEe
Confidence            1246788999999999654332  3455555555544556789999999999976555555556667666666 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhh
Q 020714          297 GLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~  315 (322)
                      |++|.||+++|.+|.+.++
T Consensus       148 Ak~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         148 AKNAININELFIEISRRIP  166 (167)
T ss_dssp             TTTTBSHHHHHHHHHHHCC
T ss_pred             cCCCCCHHHHHHHHHHhCC
Confidence            9999999999999998874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.2e-24  Score=172.10  Aligned_cols=160  Identities=15%  Similarity=0.114  Sum_probs=108.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      +.+||+++|.+|||||||+++++++.+......  +..+.........  ...+.+||++|...+.      .      .
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~--t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------~------~   67 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDP--TIEDFYRKEIEVDSSPSVLEILDTAGTEQFA------S------M   67 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT--TCCEEEEEEEEETTEEEEEEEEECCCTTCCH------H------H
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCC--ceeeeeeeeeecCcceEeeccccCCCccccc------c------c
Confidence            468999999999999999999998765432221  1112222222233  3467899999976431      1      1


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ....+..+|++++|||+++..+.  ..+..|...+.. ...++.|+++|+||+|+.............++..++. ++++
T Consensus        68 ~~~~~~~a~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e  144 (167)
T d1kaoa_          68 RDLYIKNGQGFILVYSLVNQQSF--QDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC-PFME  144 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-CEEE
T ss_pred             hHHHhhcccceeeeeeecchhhh--hhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCC-eEEE
Confidence            12345778999999999764332  245555555433 2345689999999999976544434445555555555 5999


Q ss_pred             eecCCCCCHHHHHHHHHHHh
Q 020714          295 TSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l  314 (322)
                      |||++|.||+++|++|++.+
T Consensus       145 ~Sak~g~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         145 TSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             ECTTCHHHHHHHHHHHHHHH
T ss_pred             ECCCCCcCHHHHHHHHHHHH
Confidence            99999999999999998875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.6e-24  Score=172.65  Aligned_cols=161  Identities=17%  Similarity=0.185  Sum_probs=110.6

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      .+||+++|.+|||||||++++.++.+.... +..+......  .....  ...+.+|||+|...+...            
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~--~~~~~~~~~~~~~~d~~g~~~~~~~------------   68 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK--KLNIGGKRVNLAIWDTAGQERFHAL------------   68 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEE--EEESSSCEEEEEEEECCCC------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchhee--eeccCCccceeeeeccCCcceeccc------------
Confidence            479999999999999999999887654322 2222222222  22233  356789999998754321            


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ....+..+|++++|||++++.+.  ..+..++..+........|+++|+||+|+...+.+..+....+++.++. ++++|
T Consensus        69 ~~~~~~~~~~~i~v~d~~~~~Sf--~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~-~~~e~  145 (167)
T d1z08a1          69 GPIYYRDSNGAILVYDITDEDSF--QKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA-KHYHT  145 (167)
T ss_dssp             -CCSSTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEE
T ss_pred             chhhccCCceeEEEEeCCchhHH--HhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCC-eEEEE
Confidence            11357889999999999764433  3444555554433334578999999999977655445556667776776 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhh
Q 020714          296 SGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~  316 (322)
                      ||++|.||+++|++|.+.+.+
T Consensus       146 Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         146 SAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHC
T ss_pred             ecCCCcCHHHHHHHHHHHHhh
Confidence            999999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=172.78  Aligned_cols=159  Identities=13%  Similarity=0.116  Sum_probs=107.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee--CCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .||+++|.+|||||||++++.+..+......  +...........  ....+.+|||+|...+....            .
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~--t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~------------~   68 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVP--TVFENYVADIEVDGKQVELALWDTAGLEDYDRLR------------P   68 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCC--CSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTG------------G
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCC--ceeeeccccccccccceeeeccccCccchhcccc------------h
Confidence            5799999999999999999998765432211  111222111222  23468999999997654311            1


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHH-HHHHhcccCCCCCcEEEEEeCCCCCCChhHH------------HHHHHHHh
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIR-LIERMGKQAPPKQKRVLCMNKVDLVTKKKDL------------LKVAEQFK  284 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~-~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~------------~~~~~~~~  284 (322)
                      ..+..+|++++|||++++.+..  .+.. +...+.. ..++.|+++|+||+|+.......            ......++
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~--~~~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a  145 (177)
T d1kmqa_          69 LSYPDTDVILMCFSIDSPDSLE--NIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA  145 (177)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHH-HSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             hhcccchhhhhhcccchhHHHH--HHHHHHHHHHHH-hCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHH
Confidence            4578899999999997643332  2222 3333322 23468999999999997653221            22344555


Q ss_pred             cCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          285 HLPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       285 ~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +..+..++++|||++|.||+++|+.|.+++.
T Consensus       146 ~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         146 NRIGAFGYMECSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             HHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            5566667999999999999999999998875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-23  Score=171.99  Aligned_cols=164  Identities=18%  Similarity=0.150  Sum_probs=111.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceee-eEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH-EVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      -+||+|+|.+||||||||+++.+.++........++.. ............+.+||++|...+.....            
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~------------   70 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITR------------   70 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCH------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHH------------
Confidence            37899999999999999999988765443332222222 22222222235779999999986544221            


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|+|+++..+..  .+..++..+.....++.|+++|+||+|+...+....+....++...++ ++++|||
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~--~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~-~~~e~Sa  147 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFN--HLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL-IFMETSA  147 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEECT
T ss_pred             HHhhccCEEEEEEeecChHHHH--hHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCC-EEEEecC
Confidence            2356789999999997644332  344555555444445789999999999876544444445555555555 5999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhc
Q 020714          298 LKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++|.||+++|.+|.+.+.++
T Consensus       148 ~tg~~V~e~f~~i~~~i~~~  167 (173)
T d2a5ja1         148 KTACNVEEAFINTAKEIYRK  167 (173)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999987653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.5e-23  Score=171.95  Aligned_cols=165  Identities=17%  Similarity=0.157  Sum_probs=105.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+||+++|.+|||||||++++.+.++... .+..+.+......... .....+.+|||||...+..            ..
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------------~~   69 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS------------LG   69 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhh------------HH
Confidence            47899999999999999999987765432 2222222222111111 1124578999999764322            12


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh----cccCCCCCcEEEEEeCCCCCCChh-HHHHHHHHHhcCCCCCc
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM----GKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQFKHLPGYER  291 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~----~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~  291 (322)
                      ...+..+|++++|+|+++..+..  .+..|+..+    ........|+++|+||+|+..... ........++...+..+
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~  147 (175)
T d1ky3a_          70 VAFYRGADCCVLVYDVTNASSFE--NIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP  147 (175)
T ss_dssp             -CCSTTCCEEEEEEETTCHHHHH--THHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC
T ss_pred             HHHhhccceEEEEeecccccccc--hhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCe
Confidence            24578899999999997654332  233444433    233345689999999999976432 33444555665566557


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +++|||++|.||+++|++|.+.+.++
T Consensus       148 ~~e~SA~~g~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         148 LFLTSAKNAINVDTAFEEIARSALQQ  173 (175)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhc
Confidence            99999999999999999999877664

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-23  Score=170.23  Aligned_cols=162  Identities=14%  Similarity=0.094  Sum_probs=109.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      +.+||+++|.+|||||||++++..+.+.....  .+........+...  ...+.+||++|...+..      ..     
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~--~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~-----   68 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYD--PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA------MR-----   68 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCC--CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT------HH-----
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccC--CccccccceeEEeeeeEEEeccccccCcccccc------cc-----
Confidence            46899999999999999999998876543221  11111122222222  34678999999876532      11     


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                       ...+..+|++++|||++++.+..  .+..|+..+.. ...++.|+++|+||+|+........+....+.......++++
T Consensus        69 -~~~~~~~~~~ilv~d~~~~~sf~--~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e  145 (167)
T d1c1ya_          69 -DLYMKNGQGFALVYSITAQSTFN--DLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLE  145 (167)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHHH--THHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEE
T ss_pred             -cccccccceeEEeeeccchhhhH--hHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEE
Confidence             12456789999999997653332  34455554432 234568899999999997654444444444444333347999


Q ss_pred             eecCCCCCHHHHHHHHHHHhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~  315 (322)
                      |||++|.||+++|++|.+.+.
T Consensus       146 ~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         146 SSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHT
T ss_pred             EcCCCCcCHHHHHHHHHHHhc
Confidence            999999999999999998875

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.6e-23  Score=172.83  Aligned_cols=164  Identities=18%  Similarity=0.175  Sum_probs=114.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .+||+|+|.+|||||||++++.+..+.. ..+..+++..............+.+|||||...+.....            
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~------------   73 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITS------------   73 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCG------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHH------------
Confidence            4899999999999999999998766443 233344443332222222345778999999886643221            


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++|+|+|+++..+..  ....+...+........|+++|+||+|+........+....+....+. ++++|||
T Consensus        74 ~~~~~a~~~i~v~d~t~~~s~~--~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~e~SA  150 (194)
T d2bcgy1          74 SYYRGSHGIIIVYDVTDQESFN--GVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM-PFLETSA  150 (194)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEECCT
T ss_pred             HHhccCCEEEEEEeCcchhhhh--hHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCc-ceEEEec
Confidence            3568899999999996543332  333444444434455788999999999987654444444555555555 5999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhc
Q 020714          298 LKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++|.||+++|++|.+.+.+.
T Consensus       151 k~g~gi~e~f~~l~~~i~~~  170 (194)
T d2bcgy1         151 LDSTNVEDAFLTMARQIKES  170 (194)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CcCccHHHHHHHHHHHHHHH
Confidence            99999999999999988753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-23  Score=172.20  Aligned_cols=164  Identities=17%  Similarity=0.165  Sum_probs=112.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .+||+++|.+|||||||++++.+.++..... ..+.+..............+.+|||||...+.      .      ...
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~------~~~   72 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR------S------VTR   72 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH------H------HHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhh------h------hHH
Confidence            4799999999999999999998776543222 22222221111111223467899999976431      1      122


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG  297 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa  297 (322)
                      ..+..+|++++|+|.++..+.  ..+..+...+.....++.|+++|+||+|+.............++...++ ++++|||
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa  149 (174)
T d2bmea1          73 SYYRGAAGALLVYDITSRETY--NALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL-MFLETSA  149 (174)
T ss_dssp             TTSTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCT
T ss_pred             HHhhhCCEEEEEEecccchhH--HHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCC-EEEEeeC
Confidence            457889999999999654322  2344555555444445789999999999876554444555566655665 5999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhc
Q 020714          298 LKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       298 ~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++|.||+++|++|.+.+.++
T Consensus       150 k~~~gi~e~f~~l~~~i~~~  169 (174)
T d2bmea1         150 LTGENVEEAFVQCARKILNK  169 (174)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHH
Confidence            99999999999999987754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.89  E-value=1.7e-23  Score=170.77  Aligned_cols=162  Identities=17%  Similarity=0.114  Sum_probs=107.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..+||+++|.+|||||||+|+++.+.+.....  .|...........+  ...+.+||++|...+      ....     
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~--~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~------~~~~-----   69 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE--PTKADSYRKKVVLDGEEVQIDILDTAGQEDY------AAIR-----   69 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--TTCCEEEEEEEEETTEEEEEEEEECCC---C------HHHH-----
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccC--Cccccccccccccccccccccccccccccch------hhhh-----
Confidence            35799999999999999999998766442211  12222222222233  346789999998753      1111     


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                       ...+..+|++++|+|+++..+.  ..+..|+..+... ..++.|+++|+||+|+...+....+....+++..++ ++++
T Consensus        70 -~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e  145 (168)
T d1u8za_          70 -DNYFRSGEGFLCVFSITEMESF--AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV-NYVE  145 (168)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             -hhcccccceeEEEeeccchhhh--hhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCC-eEEE
Confidence             1235678999999999764333  3455565554322 334688999999999876544444445555555555 5999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      |||++|.||+++|++|++.++.
T Consensus       146 ~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         146 TSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EcCCCCcCHHHHHHHHHHHHHC
Confidence            9999999999999999998864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=1.8e-22  Score=166.63  Aligned_cols=166  Identities=17%  Similarity=0.232  Sum_probs=110.5

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCCh--hhH-HHHHHHHH
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH--KDV-KVRVESAW  217 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~-~~~~~~~~  217 (322)
                      .|+++|.||||||||+|+|++.++ .++..+|+|+....    .....+.++||||+.........  +.. ........
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~-~~~~~~g~T~~~~~----~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIE----IEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEE----EEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCEeecccc----cccccceecccCCceeccccccccccccchhhhhhhh
Confidence            489999999999999999999876 47788999987554    23346789999998533221110  111 11222233


Q ss_pred             hhcccccEEEEEEeCCC-----------CCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHH-HHHhc
Q 020714          218 SAVNLFEVLMVVFDVHR-----------HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA-EQFKH  285 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~-----------~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~-~~~~~  285 (322)
                      ..+..+|++++|+|+..           +....+..+..++...      +.|+++|+||+|+....+...... ..+..
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~------~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~  150 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL------DIPTIVAVNKLDKIKNVQEVINFLAEKFEV  150 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT------TCCEEEEEECGGGCSCHHHHHHHHHHHHTC
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc------CCCEEEEEeeeehhhhHHHHHHHHHHHhcc
Confidence            45678899999999852           2233333344444432      467999999999886644333322 22221


Q ss_pred             CCC--CCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          286 LPG--YERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       286 ~~~--~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ...  ...++++||++|.||++|+++|.+.+.++
T Consensus       151 ~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         151 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             cccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            111  12489999999999999999999998763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.4e-23  Score=170.10  Aligned_cols=162  Identities=19%  Similarity=0.202  Sum_probs=109.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      -+||+++|.+|||||||++++.++.+....... .+.......+..++  ..+.+|||||...+.....           
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~-----------   71 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST-IGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITS-----------   71 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CC-CSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCH-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccccc-ccceeeeEEEEECCEEEEEEecccCCcHHHHHHHH-----------
Confidence            479999999999999999999887654333222 22222222233333  4678999999876543211           


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                       ..+..+|++++|||.++..+.  ..+..++..+.....++.|+++|+||+|+........+....+...++. ++++||
T Consensus        72 -~~~~~~~~~i~v~d~~~~~S~--~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S  147 (175)
T d2f9la1          72 -AYYRGAVGALLVYDIAKHLTY--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL-SFIETS  147 (175)
T ss_dssp             -HHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECC
T ss_pred             -HHhhccCeEEEEEECCCcccc--hhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCc-eEEEEe
Confidence             235778999999999654322  2344556655544445789999999999976543333333344444444 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|.|++++|++|.+.+.+
T Consensus       148 a~~g~~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         148 ALDSTNVEEAFKNILTEIYR  167 (175)
T ss_dssp             TTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999988754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=1.3e-23  Score=173.94  Aligned_cols=167  Identities=19%  Similarity=0.230  Sum_probs=112.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      .|+|+|.||||||||+|+|++.+.. +...+++|.....+... .++..+.+|||||+.......     ......++..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~-----~~~~~~~l~~   76 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG-----VGLGHQFLRH   76 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT-----TTTHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCc-eecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHH-----HHHHHHHHHH
Confidence            4899999999999999999987764 44555555554444433 456679999999986432211     1123455566


Q ss_pred             cccccEEEEEEeCCCCCCCcHH---HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDS---RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~---~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                      +..++.++++++..........   ...............++|+++|+||+|+.......+.....+.   ...+++++|
T Consensus        77 ~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~v~~iS  153 (185)
T d1lnza2          77 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT---DDYPVFPIS  153 (185)
T ss_dssp             HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC---SCCCBCCCS
T ss_pred             HHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc---cCCcEEEEE
Confidence            7778999999887543333222   1122223333334446889999999999875444444333332   234689999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|.||++|+++|.+.+.+
T Consensus       154 A~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         154 AVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             SCCSSTTHHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHhhhh
Confidence            99999999999999999865

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.5e-23  Score=168.50  Aligned_cols=163  Identities=15%  Similarity=0.151  Sum_probs=109.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..+||+++|.+|||||||+++++.+.+......+..........+...+  ..+.+|||||...+...            
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~------------   72 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV------------   72 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHH------------
Confidence            3589999999999999999999877654332222222222222233344  46789999998754221            


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ....+..+|++++|+|.++..+.  ..+..+............|+++|+||+|+........+....+.+..+. ++++|
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~-~~~e~  149 (170)
T d2g6ba1          73 THAYYRDAHALLLLYDVTNKASF--DNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL-PFMET  149 (170)
T ss_dssp             --CCGGGCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC-CEEEC
T ss_pred             HHHhhcCCceeEEEecCCcccch--hhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCC-EEEEE
Confidence            11346788999999999654332  2344444444333344678999999999987655444455555555565 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhh
Q 020714          296 SGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~  315 (322)
                      ||++|.||+++|++|.+.++
T Consensus       150 Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         150 SAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCcCHHHHHHHHHHHcC
Confidence            99999999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.2e-24  Score=172.98  Aligned_cols=164  Identities=16%  Similarity=0.199  Sum_probs=113.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ..+||+++|.+|||||||+++|....+... .+..+.+..............+.+|||+|...+..      ...     
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~-----   73 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS------LAP-----   73 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG------GHH-----
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhh------hHH-----
Confidence            457999999999999999999997765432 33333332222222222235678999999875422      111     


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                       ..+..+|++++|+|.++..+.  ..+..+...+.....++.|+++|+||+|+...+.+..+....++..+++ ++++||
T Consensus        74 -~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~-~~~e~S  149 (170)
T d1r2qa_          74 -MYYRGAQAAIVVYDITNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL-LFMETS  149 (170)
T ss_dssp             -HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECC
T ss_pred             -HHhhCcceEEEEeccchhhHH--HHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCC-EEEEee
Confidence             245788999999999654322  2344454544444455789999999999976655445556666666666 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhh
Q 020714          297 GLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~  316 (322)
                      |++|.||+++|++|.+.+.+
T Consensus       150 Ak~g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         150 AKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTTCTTHHHHHHHHHHTSCC
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999988765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-23  Score=170.08  Aligned_cols=160  Identities=13%  Similarity=0.070  Sum_probs=110.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      +.+||+++|.+|||||||+++++++.+... .++.+.   .....+..++  ..+.+|||+|...+.....         
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~---~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~---------   70 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN---TFTKLITVNGQEYHLQLVDTAGQDEYSIFPQ---------   70 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCE---EEEEEEEETTEEEEEEEEECCCCCTTCCCCG---------
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceec---ccceEEecCcEEEEeeecccccccccccccc---------
Confidence            457999999999999999999987665432 222221   1122233333  4667899999986643211         


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF  293 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  293 (322)
                         ..+..+|++++|||+++..+.  ..+..|...+.. ...++.|+++|+||+|+...+.+..+....+++.++. +++
T Consensus        71 ---~~~~~~d~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~  144 (167)
T d1xtqa1          71 ---TYSIDINGYILVYSVTSIKSF--EVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFL  144 (167)
T ss_dssp             ---GGTSSCCEEEEEEETTCHHHH--HHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEE
T ss_pred             ---hhhhhhhhhhhhcccchhhhh--hhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCC-EEE
Confidence               346789999999999764333  234455544432 2234678999999999976544444455566666666 599


Q ss_pred             EeecCCCCCHHHHHHHHHHHhh
Q 020714          294 MTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +|||++|.||+++|+.|++.+.
T Consensus       145 e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         145 ESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHhc
Confidence            9999999999999999988765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.3e-23  Score=168.75  Aligned_cols=163  Identities=13%  Similarity=0.104  Sum_probs=109.1

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..+||+++|.+||||||||+++.++.+....  ..+..+........+  ...+.+||++|...+..      .      
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~------   69 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDY--DPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGA------M------   69 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSC--CTTCCEEEEEEEEETTEEEEEEEEECC----CCH------H------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCccc--Ccccccceeeeeeecccccccccccccccccccc------c------
Confidence            4589999999999999999999877644221  112222222223333  34678999999875422      1      


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ....+..+|++++|+|.++..+..  .+..|...+. .......|+++|+||+|+........+....+++..++ ++++
T Consensus        70 ~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e  146 (171)
T d2erya1          70 REQYMRTGEGFLLVFSVTDRGSFE--EIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKV-TYME  146 (171)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHH--THHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTC-EEEE
T ss_pred             ccccccccceEEEeeccccccchh--hHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCC-EEEE
Confidence            112356789999999997643332  3444444332 22234678999999999977655555556667766776 5999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      |||++|.||+++|+.|++.+.+.
T Consensus       147 ~Sak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         147 ASAKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHHh
Confidence            99999999999999999998754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.9e-23  Score=171.33  Aligned_cols=163  Identities=13%  Similarity=0.112  Sum_probs=108.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ...+||+++|.+|||||||+++++.+.+...  ...|..+.........+  ..+.+|||+|...+....          
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~--~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~----------   74 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEE--YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR----------   74 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCS--CCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTG----------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCc--CCCceeeeeeEEEeeCCceEEeecccccccchhhhhh----------
Confidence            3468999999999999999999987765422  11222222222233333  456899999997654311          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQ  282 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~  282 (322)
                        ...+..+|++++|||++++.+... ....+...+.. ..++.|+++|+||+|+.+...            ...+....
T Consensus        75 --~~~~~~a~~~ilv~d~t~~~Sf~~-~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~  150 (185)
T d2atxa1          75 --PLSYPMTDVFLICFSVVNPASFQN-VKEEWVPELKE-YAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK  150 (185)
T ss_dssp             --GGGCTTCSEEEEEEETTCHHHHHH-HHHTHHHHHHH-HSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred             --hhcccccceeeeccccchHHHHHH-HHHHHHHHHHh-cCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHH
Confidence              135788999999999976443322 12233333332 234688999999999976432            12233445


Q ss_pred             HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +++..+..++++|||++|.||+++|+.+++++.
T Consensus       151 ~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         151 LAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             HHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence            555555557999999999999999999988764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3.9e-23  Score=168.84  Aligned_cols=161  Identities=14%  Similarity=0.094  Sum_probs=112.5

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+||+++|.+|||||||++++.+..+..... + +............  ...+.+||++|...+....            
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~------------   69 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYD-P-TIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR------------   69 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCC-T-TCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH------------
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccC-c-ceeeccccccccccccccccccccccccccccch------------
Confidence            5899999999999999999998766442221 1 1111111222233  4567899999997654311            


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ...++.+|++++|||+++..+.  ..+..|...+... ...+.|+++|+||+|+...+....+....+++.+++ ++++|
T Consensus        70 ~~~~~~~~~~llv~d~~d~~Sf--~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~-~~~e~  146 (169)
T d1x1ra1          70 EQYMRTGDGFLIVYSVTDKASF--EHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI-PYIET  146 (169)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC-CEEEE
T ss_pred             hhhhhhccEEEEecccccchhh--hccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCC-EEEEE
Confidence            1245678999999999764433  2355555554322 334688999999999987765545556667666676 69999


Q ss_pred             ecCCCC-CHHHHHHHHHHHhhh
Q 020714          296 SGLKGA-GLKALTQYLMEQFKD  316 (322)
Q Consensus       296 Sa~~g~-gi~el~~~i~~~l~~  316 (322)
                      ||++|. ||+++|+.|.+.+.+
T Consensus       147 Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         147 SAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             BCSSSCBSHHHHHHHHHHHHHH
T ss_pred             cCCCCCcCHHHHHHHHHHHHHh
Confidence            999986 999999999998875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7e-23  Score=166.67  Aligned_cols=161  Identities=16%  Similarity=0.155  Sum_probs=109.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+||+++|.+|||||||+|+|++..+.... .+........ .....  ...+.+||++|...+.      .      ..
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~------~------~~   68 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYS------A------MR   68 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSC-CCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGH------H------HH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCcc-CCccceeecc-ceeeeceeeeeeeeeccCccccc------c------ch
Confidence            489999999999999999999987654321 1211111111 12222  3467899999987531      1      11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ...+..++++++|+|.++..+.  ..+..|+..+... ..++.|+++|+||+|+...... .+....+++..++ ++++|
T Consensus        69 ~~~~~~~~~~iiv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~e~  144 (166)
T d1ctqa_          69 DQYMRTGEGFLCVFAINNTKSF--EDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE-SRQAQDLARSYGI-PYIET  144 (166)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSC-HHHHHHHHHHHTC-CEEEC
T ss_pred             hhhhhcccccceeecccccccH--HHHHHHHHHHHHhcCCCCCeEEEEeccccccccccc-HHHHHHHHHHhCC-eEEEE
Confidence            1345678999999999764333  2344555554432 2346789999999999764332 3345556665666 59999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||++|+||+++|++|++.+.++
T Consensus       145 Sak~g~gi~e~f~~i~~~i~~~  166 (166)
T d1ctqa_         145 SAKTRQGVEDAFYTLVREIRQH  166 (166)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHTC
T ss_pred             cCCCCcCHHHHHHHHHHHHHhC
Confidence            9999999999999999988753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.5e-22  Score=167.46  Aligned_cols=163  Identities=18%  Similarity=0.130  Sum_probs=109.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      +||+++|.+|||||||+++++++.+... .+..+.+..............+.+|||+|.........            .
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~------------~   70 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV------------A   70 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC------------G
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccccc------------c
Confidence            7899999999999999999997764422 22223333222221212234678999999876554332            3


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHh----cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM----GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~----~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      .+..+|++++++|.++..+.  ..+..|+..+    ......+.|+++|+||+|+.......+..........+. ++++
T Consensus        71 ~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e  147 (184)
T d1vg8a_          71 FYRGADCCVLVFDVTAPNTF--KTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNI-PYFE  147 (184)
T ss_dssp             GGTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSC-CEEE
T ss_pred             cccCccEEEEeecccchhhh--hcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCC-eEEE
Confidence            46788999999999653222  2333444333    222234578999999999976544444434444444444 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      |||++|.||+++|++|++.+.++
T Consensus       148 ~Sak~~~gI~e~f~~l~~~i~~~  170 (184)
T d1vg8a_         148 TSAKEAINVEQAFQTIARNALKQ  170 (184)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHhc
Confidence            99999999999999998887664

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.1e-22  Score=164.95  Aligned_cols=166  Identities=14%  Similarity=0.115  Sum_probs=111.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      .-+||+++|.+|||||||++++.+.........+.+..+.....+..+  ...+.+||++|...       .  . .+ .
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g-------~--e-~~-~   70 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG-------E--N-EW-L   70 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH-------H--H-HH-H
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccc-------c--c-cc-c
Confidence            358999999999999999999988654433322222222222223333  34568899876421       0  1 11 1


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ....+..+|++++|||+++..+.  ..+..|...+... ..++.|+++|+||+|+...+....+....++..+++ ++++
T Consensus        71 ~~~~~~~~~~~ilvfd~t~~~s~--~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e  147 (172)
T d2g3ya1          71 HDHCMQVGDAYLIVYSITDRASF--EKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC-KFIE  147 (172)
T ss_dssp             HHCCCCCCSEEEEEEETTCHHHH--HHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             ccccccccceeeeeecccccchh--hhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCC-eEEE
Confidence            22457899999999999664332  2345555554432 335689999999999976554444445566666666 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      |||++|.||+++|++|++.+..+
T Consensus       148 ~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         148 TSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHHc
Confidence            99999999999999999988654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.2e-23  Score=169.34  Aligned_cols=162  Identities=14%  Similarity=0.123  Sum_probs=108.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ++.+||+++|.+|||||||+++++.+.+....  ..+..+.....+...  ...+.+||++|...+....          
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~--~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----------   70 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR----------   70 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSC--CCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTG----------
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccc--ccceeeceeeeeeccCcceEEEeecccccccchhhh----------
Confidence            56799999999999999999999987654321  112222222222233  3467899999987654321          


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHH-HHHHhcccCCCCCcEEEEEeCCCCCCChhHHH------------HHHH
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIR-LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL------------KVAE  281 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~-~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~------------~~~~  281 (322)
                        ...+..+|++++|||+++..+...  +.. |...+.. ...+.|+++|+||+|+...+....            ....
T Consensus        71 --~~~~~~~~~~ilv~d~~~~~sf~~--i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  145 (183)
T d1mh1a_          71 --PLSYPQTDVSLICFSLVSPASFEN--VRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL  145 (183)
T ss_dssp             --GGGCTTCSEEEEEEETTCHHHHHH--HHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred             --hhcccccceeeeeeccchHHHHHH--HHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHH
Confidence              134688999999999976443322  222 3333332 234678999999999876543221            1233


Q ss_pred             HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       282 ~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .+++..+..++++|||++|.||+++|+.|++.+.
T Consensus       146 ~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         146 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             HHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence            4444445457999999999999999999998764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.88  E-value=2.2e-22  Score=164.82  Aligned_cols=159  Identities=14%  Similarity=0.159  Sum_probs=108.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..+.++|+++|.+|||||||++++............+.    ...........+.+||+||.....            ..
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~D~~g~~~~~------------~~   72 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGF----NVETVTYKNVKFNVWDVGGQDKIR------------PL   72 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTE----EEEEEEETTEEEEEEEESCCGGGH------------HH
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeee----eEEEeeccceeeEEecCCCcchhh------------hH
Confidence            34579999999999999999999998776554433333    233344567889999999986431            12


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH--h--cCCCCC
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF--K--HLPGYE  290 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~--~--~~~~~~  290 (322)
                      ....+..++++++|+|+++..+.  ..+..++.. +......+.|+++|+||+|+...... .+....+  .  ...++ 
T Consensus        73 ~~~~~~~~~~ii~v~D~s~~~~~--~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-~~i~~~~~~~~~~~~~~-  148 (173)
T d1e0sa_          73 WRHYYTGTQGLIFVVDCADRDRI--DEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGLTRIRDRNW-  148 (173)
T ss_dssp             HGGGTTTCCEEEEEEETTCGGGH--HHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-HHHHHHTTGGGCCSSCE-
T ss_pred             HHhhhcccceEEEEEecccchhH--HHHHHHHHHHhhhcccccceeeeeeecccccccccH-HHHHHHHHHHHHHhCCC-
Confidence            22467889999999999764332  234344433 34444456899999999999764221 1222221  1  11222 


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHh
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      .+++|||++|+||+|+|+||.+.+
T Consensus       149 ~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         149 YVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             EEEEeeCCCCcCHHHHHHHHHHhc
Confidence            589999999999999999998875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.3e-23  Score=168.74  Aligned_cols=159  Identities=15%  Similarity=0.153  Sum_probs=106.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      .+||+++|.+|||||||+++++.+.+... .++.+....  .......  ...+.+|||+|...+....           
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~--~~~~~~~~~~~~l~i~D~~g~~~~~~~~-----------   69 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH--PLVFHTNRGPIKFNVWDTAGQEKFGGLR-----------   69 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEE--EEEECBTTCCEEEEEEECTTHHHHSSCG-----------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccc--ccccccccccccccccccccccccceec-----------
Confidence            47899999999999999999987764321 111222222  2222233  3568999999986543211           


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                       ...+..+|++++|||+++..+...  +..|+..+... .++.|+++|+||+|+.......+  ...++...+. ++++|
T Consensus        70 -~~~~~~~~~~ilv~d~~~~~Sf~~--~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~--~~~~~~~~~~-~~~e~  142 (170)
T d1i2ma_          70 -DGYYIQAQCAIIMFDVTSRVTYKN--VPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNL-QYYDI  142 (170)
T ss_dssp             -GGGTTTCCEEEEEEETTSGGGGTT--HHHHHHHHHHH-HCSCCEEEEEECCCCSCSCCTTT--SHHHHSSCSS-EEEEE
T ss_pred             -chhcccccchhhccccccccccch--hHHHHHHHhhc-cCCCceeeecchhhhhhhhhhhH--HHHHHHHcCC-EEEEE
Confidence             135688999999999988655443  44555444322 23688999999999976543222  2344555555 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||++|.||+++|++|.+.+..+
T Consensus       143 Sak~~~~v~e~f~~l~~~l~~~  164 (170)
T d1i2ma_         143 SAKSNYNFEKPFLWLARKLIGD  164 (170)
T ss_dssp             BTTTTBTTTHHHHHHHHHHHTC
T ss_pred             eCCCCCCHHHHHHHHHHHHccC
Confidence            9999999999999999988753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.8e-23  Score=169.48  Aligned_cols=164  Identities=14%  Similarity=0.145  Sum_probs=89.1

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..+||+++|.+|||||||+++|.+..+.... .+..+.......+..++  ..+.+|||||...+.....          
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~----------   73 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF-ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT----------   73 (173)
T ss_dssp             EEEEEEEECCCCC----------------CH-HHHHCEEEEEEEEEETTEEEEEEEEEC---------CC----------
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcc-CccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHH----------
Confidence            3589999999999999999999876643211 11122222222233333  4567899999875533211          


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                        ..+..+|++|+|||++++.+.  ..+..+...+......+.|+++|+||+|+........+....++...+. ++++|
T Consensus        74 --~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~-~~~e~  148 (173)
T d2fu5c1          74 --AYYRGAMGIMLVYDITNEKSF--DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI-KFMET  148 (173)
T ss_dssp             --TTTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC-EEEEC
T ss_pred             --HhccCCCEEEEEEECCChhhH--HHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCC-EEEEE
Confidence              346889999999999764332  2444555555544556789999999999987654433444444444455 59999


Q ss_pred             ecCCCCCHHHHHHHHHHHhhhc
Q 020714          296 SGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ||++|+||+++|++|.+.+.++
T Consensus       149 Sa~~g~gv~e~f~~l~~~i~~k  170 (173)
T d2fu5c1         149 SAKANINVENAFFTLARDIKAK  170 (173)
T ss_dssp             CC---CCHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999988654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.5e-23  Score=167.72  Aligned_cols=162  Identities=17%  Similarity=0.203  Sum_probs=107.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+||+++|.+|||||||++++..+.+.... .| |...........++  ..+.+|||+|...+.      .       .
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~-~p-Ti~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------~-------~   66 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEY-DP-TLESTYRHQATIDDEVVSMEILDTAGQEDTI------Q-------R   66 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCC-CT-TCCEEEEEEEEETTEEEEEEEEECCCCCCCH------H-------H
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcc-CC-ceeccccccccccccceEEEEeecccccccc------c-------c
Confidence            478999999999999999999987654221 11 11111112222333  467899999986431      1       1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ...+..+|++++|||+++..+.... .+..+.....  ..++.|+++|+||+|+...+.+..+....+++.+++ ++++|
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~  143 (168)
T d2atva1          67 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELAC-AFYEC  143 (168)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH--TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-EEEEC
T ss_pred             hhhhcccccceeecccCCccchhhhhhhcccccccc--cccCcceeeeccchhhhhhccCcHHHHHHHHHHhCC-eEEEE
Confidence            1245678999999999765333322 1222222222  234678999999999976544444555566665666 69999


Q ss_pred             ecCCCCC-HHHHHHHHHHHhhhcC
Q 020714          296 SGLKGAG-LKALTQYLMEQFKDLG  318 (322)
Q Consensus       296 Sa~~g~g-i~el~~~i~~~l~~~~  318 (322)
                      ||++|.| |+++|..|.+.+.+++
T Consensus       144 Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         144 SACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             CTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcCHHHHHHHHHHHHHHhc
Confidence            9999995 9999999999887654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.88  E-value=1.7e-22  Score=166.57  Aligned_cols=164  Identities=14%  Similarity=0.271  Sum_probs=108.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCC------CCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK------TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKV  211 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  211 (322)
                      +.++|+++|.||+|||||+|+|++.........      .|.+...........+..+.++|+||...            
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~------------   71 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD------------   71 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH------------
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccc------------
Confidence            457899999999999999999997543322221      12222222223445677889999999652            


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH--HHHHHHHH-hcCCC
Q 020714          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD--LLKVAEQF-KHLPG  288 (322)
Q Consensus       212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~--~~~~~~~~-~~~~~  288 (322)
                      ....+...+..+|++++|+|++.+...+...+..++...      +.|+++|+||+|+......  .....+.+ ....+
T Consensus        72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~------~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
T d1wb1a4          72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHN  145 (179)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             cccchhhhhhhccccccccccccccchhhhhhhhhhhhc------CCcceeccccccccCHHHHHHHHHHHHHHHHHhhc
Confidence            344555667889999999999887655554555544443      4679999999999875321  12222222 22222


Q ss_pred             --CCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714          289 --YERIFMTSGLKGAGLKALTQYLMEQFKDLGL  319 (322)
Q Consensus       289 --~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~  319 (322)
                        ..++++|||++|+|+++|++.|.+.+.+.++
T Consensus       146 ~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~e~  178 (179)
T d1wb1a4         146 LKNSSIIPISAKTGFGVDELKNLIITTLNNAEI  178 (179)
T ss_dssp             GGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCC
T ss_pred             CCCCeEEEEEccCCcCHHHHHHHHHhcCCcccc
Confidence              2479999999999999999999999877543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.5e-22  Score=167.23  Aligned_cols=162  Identities=16%  Similarity=0.121  Sum_probs=108.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+||+++|.+|||||||++++..+.+.... .+ +............  ...+.+|||+|...+....            
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~-~~-t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~------------   68 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEY-VP-TVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR------------   68 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CC-CSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTG------------
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCc-CC-ceeeecceeEeeCCceeeeeccccccchhhhhhh------------
Confidence            589999999999999999999987654221 12 2222222222233  3467899999998654311            


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHH-HHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHHH
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIR-LIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQF  283 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~-~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~~  283 (322)
                      ...+..+|++++|||+++..+..  .+.. +...+. ...++.|+++|+||+|+.....            ...+....+
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~Sf~--~~~~~~~~~~~-~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  145 (191)
T d2ngra_          69 PLSYPQTDVFLVCFSVVSPSSFE--NVKEKWVPEIT-HHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL  145 (191)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHH-HHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred             hhcccccceeecccccchHHHHH--HHHHHHHHHHh-hcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHH
Confidence            13567899999999997654332  3333 333332 2345688999999999975432            222334445


Q ss_pred             hcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          284 KHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       284 ~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +...+..++++|||++|.||+++|+.+.+.+.+.
T Consensus       146 ~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         146 ARDLKAVKYVECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             HHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             HHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence            5444444699999999999999999999876653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.6e-22  Score=163.23  Aligned_cols=162  Identities=15%  Similarity=0.173  Sum_probs=109.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      -+||+++|.+|||||||++++++.++.... .+..+.......+...+  ..+.+|||||...+.....           
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~-----------   69 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSF-ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITT-----------   69 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCH-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcc-CCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHH-----------
Confidence            478999999999999999999887654321 12222222222233333  4567899999886654221           


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS  296 (322)
                       ..+..+|++++|||.++..+.  ..+..+............|+++++||.|+...... .+....++..++. ++++||
T Consensus        70 -~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~-~~~~~~~~~~~~~-~~~~~S  144 (166)
T d1g16a_          70 -AYYRGAMGIILVYDITDERTF--TNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVT-ADQGEALAKELGI-PFIESS  144 (166)
T ss_dssp             -HHHTTEEEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSC-HHHHHHHHHHHTC-CEEECB
T ss_pred             -HHHhcCCEEEEEEECCCccCH--HHHHhhhhhhhccccCcceeeeecchhhhhhhhhh-HHHHHHHHHhcCC-eEEEEC
Confidence             246788999999999764332  23334444444444456789999999998765332 3344555555565 699999


Q ss_pred             cCCCCCHHHHHHHHHHHhhhc
Q 020714          297 GLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       297 a~~g~gi~el~~~i~~~l~~~  317 (322)
                      |++|+||+++|++|.+.+.++
T Consensus       145 a~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         145 AKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999988753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.3e-22  Score=165.62  Aligned_cols=163  Identities=16%  Similarity=0.150  Sum_probs=111.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEe----------eCCccEEEEeCCCcccCCCCCChh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMT----------KADTQICIFDTPGLMLNKSGYSHK  207 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~----------~~~~~~~l~DtpG~~~~~~~~~~~  207 (322)
                      .+||+++|.+|||||||+++|.+..+.... ...+.+.........          .....+.+|||||...+       
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~-------   77 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF-------   77 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhh-------
Confidence            489999999999999999999976643221 111111111110010          01246789999997532       


Q ss_pred             hHHHHHHHHH-hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc
Q 020714          208 DVKVRVESAW-SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH  285 (322)
Q Consensus       208 ~~~~~~~~~~-~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~  285 (322)
                            ...+ ..+..+|++++|||+++..  ....+..|+..+... .....|+++|+||+|+...+....+....+++
T Consensus        78 ------~~~~~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~  149 (186)
T d2f7sa1          78 ------RSLTTAFFRDAMGFLLMFDLTSQQ--SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD  149 (186)
T ss_dssp             ------HHHHHHHHTTCCEEEEEEETTCHH--HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             ------HHHHHHHHhcCCEEEEEEeccccc--cceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHH
Confidence                  1111 2367899999999996532  223455666665543 34457899999999997665555555667777


Q ss_pred             CCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          286 LPGYERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       286 ~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ..++ ++++|||++|.||+++|++|.+.+.++
T Consensus       150 ~~~~-~~~e~Sak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         150 KYGI-PYFETSAATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             HTTC-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             HcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            6776 699999999999999999999987654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-21  Score=159.70  Aligned_cols=161  Identities=16%  Similarity=0.113  Sum_probs=106.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      ..+||+|+|.+|||||||+|++..+.+... ....+.+.....  ....  ...+.+||++|....            ..
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~~i~d~~g~~~~------------~~   70 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKD--LEVDGHFVTMQIWDTAGQERF------------RS   70 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEE--EEETTEEEEEEEEECCCCGGG------------HH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeee--eeecCceeeEeeecccCccee------------hh
Confidence            457999999999999999999987664432 222222222222  2233  345689999997642            11


Q ss_pred             HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh----cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCC
Q 020714          215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM----GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE  290 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~----~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~  290 (322)
                      .....+..+|++++++|.+...+..  .+..|+..+    ......+.|+++|+||+|+.+.. ...+....+....+..
T Consensus        71 ~~~~~~~~~~~~i~~~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~-v~~~~~~~~~~~~~~~  147 (174)
T d1wmsa_          71 LRTPFYRGSDCCLLTFSVDDSQSFQ--NLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEEAQAWCRDNGDY  147 (174)
T ss_dssp             HHGGGGTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHHHHHHHHHTTCC
T ss_pred             hhhhhhhccceEEEEEeeecccccc--hhhhHHHHHHHHhccccCCCceEEEeccccchhhcc-CcHHHHHHHHHHcCCC
Confidence            2224568889999999996543322  233343332    23334568999999999997643 2233344455444444


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          291 RIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      ++++|||++|.||+++|++|++.+.
T Consensus       148 ~~~e~Sak~~~gI~e~f~~l~~~il  172 (174)
T d1wmsa_         148 PYFETSAKDATNVAAAFEEAVRRVL  172 (174)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCcCHHHHHHHHHHHHh
Confidence            6999999999999999999998875

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2.5e-21  Score=161.42  Aligned_cols=168  Identities=18%  Similarity=0.228  Sum_probs=109.6

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChh-hHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHK-DVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~  216 (322)
                      ..+|+|+|.||||||||+|+|++.+ ...++..+++|......   .....+.+.|++|........... .........
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY---IINDELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE---EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccc---cccccceEEEEEeeccccccccccchhhhHHhhh
Confidence            4589999999999999999999865 34556666666654443   224567889999886543322111 122334455


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHHHHHhcCCCCCcEEE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~  294 (322)
                      +..+..+|++++++|++.+....+..+..++...      ++|+++|+||+|+.....  ...+............++++
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~------~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~  173 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL  173 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred             hccccchhhhhhhhhccccccccccccccccccc------cCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEE
Confidence            5667888999999999877666555666666553      357999999999876432  12222223333345557999


Q ss_pred             eecCCCCCHHHHHHHHHHHhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +||++|.|+++++++|.+.+.
T Consensus       174 ~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         174 FSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHT
T ss_pred             EeCCCCCCHHHHHHHHHHHhC
Confidence            999999999999999998874

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.2e-22  Score=161.70  Aligned_cols=163  Identities=17%  Similarity=0.160  Sum_probs=111.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ..+||+++|.+|||||||+++|.+..+....... .+.......+...  ...+.+|||||...+....      .    
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------~----   74 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAAT-IGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT------P----   74 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC-CSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH------H----
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccc-eeecceeEEEEEeccccEEEEEECCCchhhHHHH------H----
Confidence            4689999999999999999999887654322222 2222122122233  4568999999987653310      1    


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                        ..+..+|++++|||+++..+  ...+..++..+... .....|+++++||.|..... ........+...+++ ++++
T Consensus        75 --~~~~~~~~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-v~~~~~~~~~~~~~~-~~~e  148 (177)
T d1x3sa1          75 --SYYRGAQGVILVYDVTRRDT--FVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VDRNEGLKFARKHSM-LFIE  148 (177)
T ss_dssp             --HHHTTCCEEEEEEETTCHHH--HHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SCHHHHHHHHHHTTC-EEEE
T ss_pred             --HHHhcCCEEEEEEECCCccc--cccchhhhhhhcccccccceeeEEEeecccccccc-ccHHHHHHHHHHCCC-EEEE
Confidence              23578899999999965322  23455667666543 33457899999999986643 333334455555666 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhhhc
Q 020714          295 TSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      |||++|.||+++|++|.+.+.+.
T Consensus       149 ~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         149 ASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EeCCCCCCHHHHHHHHHHHHccC
Confidence            99999999999999999988754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.4e-22  Score=161.77  Aligned_cols=158  Identities=12%  Similarity=0.144  Sum_probs=107.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+||+++|.+|||||||++++.+..+.......+   ......+..++  ..+.+|||+|...+                
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~---~~~~~~i~v~~~~~~l~i~Dt~g~~~~----------------   65 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES---EQYKKEMLVDGQTHLVLIREEAGAPDA----------------   65 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSC---EEEEEEEEETTEEEEEEEEECSSCCCH----------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccc---eeEEEEeecCceEEEEEEeeccccccc----------------
Confidence            5899999999999999999999887644332222   22222233444  56789999997631                


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCCC--hhHHHHHHHHH-hcCCCCCcE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTK--KKDLLKVAEQF-KHLPGYERI  292 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~--~~~~~~~~~~~-~~~~~~~~~  292 (322)
                       ..++.+|++|+|||+++..+.... .+..++..+........|+++|+||.|+...  ..........+ .+.++. ++
T Consensus        66 -~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~-~~  143 (175)
T d2bmja1          66 -KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRC-SY  143 (175)
T ss_dssp             -HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTE-EE
T ss_pred             -ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCC-eE
Confidence             135668999999999765444332 3344555555555566889999999998543  22333444555 344444 69


Q ss_pred             EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          293 FMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      ++|||++|.|++++|..|.+.+...
T Consensus       144 ~e~SAk~~~~v~~~F~~l~~~i~~~  168 (175)
T d2bmja1         144 YETCATYGLNVDRVFQEVAQKVVTL  168 (175)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCcCHHHHHHHHHHHHHHh
Confidence            9999999999999999999877653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.86  E-value=1.1e-21  Score=159.27  Aligned_cols=157  Identities=13%  Similarity=0.102  Sum_probs=105.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .+||+++|++|||||||+++|.+..+...   ...|.......+...+..+.+||+||...+..            ....
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~---~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------~~~~   66 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNED---MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS------------MWER   66 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCS---CCCCCSEEEEEEEETTEEEEEEEECCSHHHHT------------THHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCc---ccccceeeeeeeeeeeEEEEEeeccccccccc------------cccc
Confidence            47899999999999999999988765421   11233333333556788899999999753211            1223


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH----hcCCCCCcEE
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF----KHLPGYERIF  293 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~  293 (322)
                      .+..++++++|+|+++..+.  .....++..+ .....++.|+++|+||+|+..... ..+..+.+    ....+ .+++
T Consensus        67 ~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~-~~~~  142 (164)
T d1zd9a1          67 YCRGVSAIVYMVDAADQEKI--EASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDRE-ICCY  142 (164)
T ss_dssp             HHTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSC-EEEE
T ss_pred             cccccchhhccccccccccc--chhhhhhhhhhhhhcccCCcEEEEEeccccchhhh-HHHHHHHHHHHHHHhCC-CEEE
Confidence            46788999999999764332  2333444433 333455789999999999975432 22222222    22222 3689


Q ss_pred             EeecCCCCCHHHHHHHHHHHh
Q 020714          294 MTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l  314 (322)
                      ++||++|.|++++|+||.+.+
T Consensus       143 e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         143 SISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTC
T ss_pred             EEeCcCCcCHHHHHHHHHHcc
Confidence            999999999999999999865

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=5.5e-22  Score=161.86  Aligned_cols=162  Identities=20%  Similarity=0.218  Sum_probs=110.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      .+||+++|.+|||||||++++.++++... .+..+................+.+|||+|...+..      ..      .
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~------~~------~   70 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS------LA------P   70 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG------GH------H
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHH------HH------H
Confidence            58999999999999999999998765432 22333222222211222235789999999875422      11      1


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC---hhHHHHHHHHHhcCCCCCcEEE
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK---KKDLLKVAEQFKHLPGYERIFM  294 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~  294 (322)
                      ..+..+|++++|||.+++.+.  ..+..+............|+++|+||+|+.+.   +.........+++..++ ++++
T Consensus        71 ~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~-~~~e  147 (170)
T d1ek0a_          71 MYYRNAQAALVVYDVTKPQSF--IKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGL-LFFE  147 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEE
T ss_pred             HHHhccceEEEEEeCCcccch--hhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCC-EEEE
Confidence            346788999999999764333  23445554444444456789999999998643   23333445555555566 6999


Q ss_pred             eecCCCCCHHHHHHHHHHHhh
Q 020714          295 TSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       295 iSa~~g~gi~el~~~i~~~l~  315 (322)
                      |||++|.||+++|..|.+.+.
T Consensus       148 ~Sak~g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         148 TSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             CCTTTCTTHHHHHHHHHTTSC
T ss_pred             ecCCCCcCHHHHHHHHHHHhc
Confidence            999999999999999987664

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=5.5e-22  Score=163.44  Aligned_cols=161  Identities=14%  Similarity=0.142  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +||+++|.+|||||||++++..+.+..... + +...........+  ...+.+||++|...+....            .
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~-~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------------~   68 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYV-P-TVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR------------P   68 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCC-C-CSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTG------------G
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccC-C-ceeecccccccccceEEeeccccccccccccccc------------c
Confidence            689999999999999999999876543211 1 1122222222233  3466799999987654311            1


Q ss_pred             hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHHHhc
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFKH  285 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~~~~  285 (322)
                      ..+..+|++++|||+++..+..  .+..+.........++.|+++|+||+|+.....            +..+....+++
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~--~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~  146 (179)
T d1m7ba_          69 LSYPDSDAVLICFDISRPETLD--SVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK  146 (179)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred             chhhhhhhhheeeecccCCCHH--HHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHH
Confidence            3578899999999997654332  233322222222234689999999999865321            22233444554


Q ss_pred             CCCCCcEEEeecCCCC-CHHHHHHHHHHHhhh
Q 020714          286 LPGYERIFMTSGLKGA-GLKALTQYLMEQFKD  316 (322)
Q Consensus       286 ~~~~~~~~~iSa~~g~-gi~el~~~i~~~l~~  316 (322)
                      ..+..++++|||++|. |++++|+.+.+.+..
T Consensus       147 ~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         147 QIGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             HHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             HhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            4455579999999998 599999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.5e-21  Score=158.29  Aligned_cols=159  Identities=17%  Similarity=0.192  Sum_probs=108.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      +.+||+++|.+|||||||++++..+.+..... ..+................+.+||++|.......           ..
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~   69 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS-----------MV   69 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTT-----------TH
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccc-----------cc
Confidence            35899999999999999999999776543332 2222222222223333557889999997532110           01


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  295 (322)
                      ...+..+|++++|||+++..+..  .+..|+..+.. ...++.|+++|+||+|+.....+..+....+++.+++ ++++|
T Consensus        70 ~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~  146 (165)
T d1z06a1          70 QHYYRNVHAVVFVYDMTNMASFH--SLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-PLFET  146 (165)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHH--THHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CEEEC
T ss_pred             eeeecCCCceEEEEEeehhhhhh--hhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCC-EEEEE
Confidence            12467899999999997643332  34455555433 2335689999999999977655555556677777777 69999


Q ss_pred             ecCC---CCCHHHHHHHH
Q 020714          296 SGLK---GAGLKALTQYL  310 (322)
Q Consensus       296 Sa~~---g~gi~el~~~i  310 (322)
                      ||++   |+||+++|++|
T Consensus       147 SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         147 SAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             CSSSGGGGSCHHHHHHHH
T ss_pred             ecccCCcCcCHHHHHHHh
Confidence            9997   55999999887

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.86  E-value=6.9e-21  Score=152.84  Aligned_cols=156  Identities=15%  Similarity=0.133  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA  219 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  219 (322)
                      +||+++|.+|||||||+|+|.+.++.........+    ..........+.+||+||....            .......
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~------------~~~~~~~   64 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKI------------RPLWRHY   64 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGG------------HHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccc------------hhhhhhh
Confidence            47999999999999999999887654332222211    2223456778999999998743            1122245


Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCCChhHHH---HHHHHHhcCCCCCcEEEe
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTKKKDLL---KVAEQFKHLPGYERIFMT  295 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~i  295 (322)
                      +..++++++++|..+..+.  .....+... +........|+++++||+|+.......+   .....+....+. ++++|
T Consensus        65 ~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~  141 (160)
T d1r8sa_          65 FQNTQGLIFVVDSNDRERV--NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW-YIQAT  141 (160)
T ss_dssp             TTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE-EEEEC
T ss_pred             hccceeEEEEEEecChHHH--HHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCC-EEEEe
Confidence            6788999999999764332  233333333 3333344678999999999876532211   111222333333 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHh
Q 020714          296 SGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       296 Sa~~g~gi~el~~~i~~~l  314 (322)
                      ||++|+||+++|+||.+.+
T Consensus       142 SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         142 CATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             BTTTTBTHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHhcC
Confidence            9999999999999998864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.7e-20  Score=150.62  Aligned_cols=167  Identities=26%  Similarity=0.412  Sum_probs=119.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHH-HHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKV-RVESAWS  218 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~~~~~~  218 (322)
                      -.|+|+|.||||||||+|+|++.+...++..+++++.............+.++|++|......    ..... .......
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~   81 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK----RAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH----HHHHHHHTCCTTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecch----hhhhhhhhhcccc
Confidence            458999999999999999999998888888888888877777777778888999998753210    11111 0111111


Q ss_pred             hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL  298 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~  298 (322)
                      ....+++++++.|.+...    .....+...+...   ..|.++|+||+|......+.......+....+..+++++||+
T Consensus        82 ~~~~~~~~l~~~d~~~~~----~~~~~~~~~l~~~---~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~  154 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWT----PDDEMVLNKLREG---KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  154 (179)
T ss_dssp             CCCCEEEEEEEEETTCCC----HHHHHHHHHHHSS---SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             chhhcceeEEEEecCccc----hhHHHHHHHhhhc---cCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCc
Confidence            235678888888875321    2122222333322   356999999999988776666666777777777789999999


Q ss_pred             CCCCHHHHHHHHHHHhhhc
Q 020714          299 KGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       299 ~g~gi~el~~~i~~~l~~~  317 (322)
                      +|+||++|+++|.+.+++.
T Consensus       155 ~g~gi~~L~~~i~~~lpe~  173 (179)
T d1egaa1         155 TGLNVDTIAAIVRKHLPEA  173 (179)
T ss_dssp             TTTTHHHHHHHHHTTCCBC
T ss_pred             CCCCHHHHHHHHHHhCCCC
Confidence            9999999999999988654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.84  E-value=2.9e-20  Score=152.08  Aligned_cols=161  Identities=20%  Similarity=0.206  Sum_probs=107.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      ++.+||+|+|.+|||||||+|+|.+.++.......+.+....    ...+..+.++|++|.......            .
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~------------~   76 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI----VINNTRFLMWDIGGQESLRSS------------W   76 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEE----EETTEEEEEEECCC----CGG------------G
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEE----eecceEEEEeccccccccccc------------h
Confidence            456899999999999999999999988776666555443332    256788999999987643221            1


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh--c-CCCCCcEE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--H-LPGYERIF  293 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~--~-~~~~~~~~  293 (322)
                      ...+..++.+++++|.++..+.... ................|+++|+||+|+...... .+....+.  . .....+++
T Consensus        77 ~~~~~~~~~~i~v~d~~d~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~  154 (177)
T d1zj6a1          77 NTYYTNTEFVIVVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECMTV-AEISQFLKLTSIKDHQWHIQ  154 (177)
T ss_dssp             HHHHTTCCEEEEEEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-HHHHHHHTGGGCCSSCEEEE
T ss_pred             hhhhccceeeeeecccccccchhhh-hhhhhhhhhcccccceEEEEEEEcccccccCcH-HHHHHHHHHHhhHhcCCEEE
Confidence            1234667999999999765443322 222222333333446889999999999765321 22222221  1 12233699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhh
Q 020714          294 MTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +|||++|+||+++++||.++++
T Consensus       155 ~~Sa~tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         155 ACCALTGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCHHHHHHHHHHHhC
Confidence            9999999999999999998864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.82  E-value=2e-19  Score=145.25  Aligned_cols=163  Identities=18%  Similarity=0.171  Sum_probs=111.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA  216 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  216 (322)
                      .+.++|+++|.+|||||||+|++.+..+..+....    ..........+..+.++|++|......            ..
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~   66 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTI----GFNVETVTYKNLKFQVWDLGGLTSIRP------------YW   66 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCS----SEEEEEEEETTEEEEEEEECCCGGGGG------------GG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcceeccc----ceeeeeeccCceEEEEeeccccccccc------------cc
Confidence            35689999999999999999999988765443322    233333456788899999998865322            11


Q ss_pred             HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH---HHHHHHHhcCCCCCcEE
Q 020714          217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGYERIF  293 (322)
Q Consensus       217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~  293 (322)
                      ...+..++.+++++|+.+..... .....+............|+++|+||.|+.......   ......+..... .+++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~-~~~~  144 (169)
T d1upta_          67 RCYYSNTDAVIYVVDSCDRDRIG-ISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRK-WQIF  144 (169)
T ss_dssp             GGGCTTCSEEEEEEETTCCTTHH-HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSC-EEEE
T ss_pred             hhhhhhhhhhhhhhhhhhcchhh-hccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCC-CEEE
Confidence            23457779999999986543332 223334444444445568899999999998653321   111122222223 3699


Q ss_pred             EeecCCCCCHHHHHHHHHHHhhhc
Q 020714          294 MTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       294 ~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                      +|||++|+||++++++|.+.+.++
T Consensus       145 ~~SA~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         145 KTSATKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999988754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.81  E-value=1.6e-19  Score=154.17  Aligned_cols=159  Identities=17%  Similarity=0.274  Sum_probs=102.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEE------------------EeeCCccEEEEeCCCcccC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV------------------MTKADTQICIFDTPGLMLN  200 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~------------------~~~~~~~~~l~DtpG~~~~  200 (322)
                      .+.|+|+|.+|+|||||+|+|++...... ...+++.......                  +...+..+.++||||+..+
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSAVASR-EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhcchhe-ecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            34599999999999999999986432211 1111111100000                  1134567999999998765


Q ss_pred             CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH-----
Q 020714          201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-----  275 (322)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~-----  275 (322)
                      ...            +...+..+|++|+|+|+..+...+......++...+      .|+|+|+||+|+......     
T Consensus        84 ~~~------------~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~------~p~iivlNK~D~~~~~~~~~~~~  145 (227)
T d1g7sa4          84 TTL------------RKRGGALADLAILIVDINEGFKPQTQEALNILRMYR------TPFVVAANKIDRIHGWRVHEGRP  145 (227)
T ss_dssp             TTS------------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTT------CCEEEEEECGGGSTTCCCCTTCC
T ss_pred             ccc------------chhcccccceEEEEEecccCcccchhHHHHHhhcCC------CeEEEEEECccCCCchhhhhhHH
Confidence            432            223567789999999998877666666666665533      579999999998754210     


Q ss_pred             -------------------HHHHHHHHhc-------------CCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          276 -------------------LLKVAEQFKH-------------LPGYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       276 -------------------~~~~~~~~~~-------------~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                                         ..+....+..             .....+++++||++|.|+++|++.|.....+
T Consensus       146 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         146 FMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                               0011111111             1122468999999999999999999887655

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=3.1e-19  Score=143.25  Aligned_cols=154  Identities=14%  Similarity=0.140  Sum_probs=103.3

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      ||+++|.||||||||+|+|.+.++..+.+..+.+.    ......+..+.++|++|...+..            .....+
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~   65 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS----EELAIGNIKFTTFDLGGHIQARR------------LWKDYF   65 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEE----EEECCTTCCEEEEECCCSGGGGG------------GGGGGC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeE----EEeccCCeeEEEEeeccchhhhh------------hHhhhh
Confidence            79999999999999999999988766555444433    33446678899999998764322            111345


Q ss_pred             ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc----------CCCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----------LPGYE  290 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~----------~~~~~  290 (322)
                      ..++++++++|.++...... ....+..........+.|+++++||.|+..... ..+....+..          .....
T Consensus        66 ~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~  143 (166)
T d2qtvb1          66 PEVNGIVFLVDAADPERFDE-ARVELDALFNIAELKDVPFVILGNKIDAPNAVS-EAELRSALGLLNTTGSQRIEGQRPV  143 (166)
T ss_dssp             TTCSEEEEEEETTCGGGHHH-HHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCC-HHHHHHHHTCSSCCC---CCSSCCE
T ss_pred             hheeeeeeeccccchhhhhh-hhHHHHhhhhhhccCCceEEEEeccccccccCC-HHHHHHHhhhhhhhHHHhhcccCCC
Confidence            77899999999976433222 222333333444455688999999999976422 1122222211          01112


Q ss_pred             cEEEeecCCCCCHHHHHHHHHH
Q 020714          291 RIFMTSGLKGAGLKALTQYLME  312 (322)
Q Consensus       291 ~~~~iSa~~g~gi~el~~~i~~  312 (322)
                      ++++|||++|+||+|+|+||.+
T Consensus       144 ~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         144 EVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEEBTTTTBSHHHHHHHHTT
T ss_pred             EEEEeeCCCCCCHHHHHHHHhC
Confidence            5899999999999999999965

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.80  E-value=1.1e-19  Score=151.39  Aligned_cols=160  Identities=19%  Similarity=0.214  Sum_probs=114.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC---------------eeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT---------------KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG  203 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~---------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~  203 (322)
                      .++|+++|..++|||||+++|++.               .........|.|.+.....+...+..+.++||||...|   
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f---   79 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY---   79 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH---
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHH---
Confidence            578999999999999999999741               00112233466777666666677889999999997643   


Q ss_pred             CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHH---H
Q 020714          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV---A  280 (322)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~---~  280 (322)
                               ...+...+..+|++++|+|+..+...+..+...++..++.     .|+|+++||+|+.......+..   .
T Consensus        80 ---------~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~-----~~iIv~iNK~D~~~~~~~~~~i~~~i  145 (196)
T d1d2ea3          80 ---------VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV-----EHVVVYVNKADAVQDSEMVELVELEI  145 (196)
T ss_dssp             ---------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTC-----CCEEEEEECGGGCSCHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcC-----CcEEEEEecccccccHHHHHHHHHHH
Confidence                     4455567889999999999988876666566666666553     3589999999998654332222   2


Q ss_pred             HHHhcCCCC----CcEEEeecCCC----------CCHHHHHHHHHHHhh
Q 020714          281 EQFKHLPGY----ERIFMTSGLKG----------AGLKALTQYLMEQFK  315 (322)
Q Consensus       281 ~~~~~~~~~----~~~~~iSa~~g----------~gi~el~~~i~~~l~  315 (322)
                      +.+....+.    .+++++||++|          .|+.+|++.|.+.+.
T Consensus       146 ~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         146 RELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             HHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            222221222    46999999999          599999999887654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.79  E-value=7.3e-19  Score=144.10  Aligned_cols=161  Identities=17%  Similarity=0.186  Sum_probs=101.3

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      .++..||+++|.+|||||||+|+|.+..+....+..+.+...    ....+..+.++|++|.......            
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------------   73 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE----LTIAGMTFTTFDLGGHIQARRV------------   73 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEE----EEETTEEEEEEEECC----CCG------------
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeE----EEecccccccccccchhhhhhH------------
Confidence            356789999999999999999999998876555444444332    2355677899999988755431            


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC---------
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---------  286 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~---------  286 (322)
                      .......++.+++++|.++...... ....+..........+.|+++++||.|+..... .......+...         
T Consensus        74 ~~~~~~~~~~~~~~~d~~d~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~-~~~i~~~~~~~~~~~~~~~~  151 (186)
T d1f6ba_          74 WKNYLPAINGIVFLVDCADHERLLE-SKEELDSLMTDETIANVPILILGNKIDRPEAIS-EERLREMFGLYGQTTGKGSV  151 (186)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHH-HHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC-HHHHHHHHTCTTTCCCSSCC
T ss_pred             HhhhhcccceeeeeeeccCccchHH-HHHHHHHhhcccccCCCceEEEEeccCccccCC-HHHHHHHHhhcccchhhhhh
Confidence            1134577799999999866432222 222233333334445689999999999876432 22222222110         


Q ss_pred             ------CCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714          287 ------PGYERIFMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       287 ------~~~~~~~~iSa~~g~gi~el~~~i~~~l  314 (322)
                            ....++++|||++|+||+|+|+||.+++
T Consensus       152 ~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         152 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             hHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence                  1112589999999999999999999765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.79  E-value=1.8e-18  Score=144.11  Aligned_cols=162  Identities=18%  Similarity=0.309  Sum_probs=103.3

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeee--eecCCCCceeeeEEEEE-----------------------eeCCccEEE
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVM-----------------------TKADTQICI  191 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~--~~~~~~~~t~~~~~~~~-----------------------~~~~~~~~l  191 (322)
                      ...++|+++|..++|||||+|+|++....  ......|.|........                       ...+..+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            34678999999999999999999874211  11222233322111110                       001234789


Q ss_pred             EeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714          192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (322)
Q Consensus       192 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~  270 (322)
                      +||||...            ....+...+..+|++++|+|+..+...+. ......+..++.     .++++++||+|+.
T Consensus        83 iDtPGh~~------------f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~-----~~iiv~inK~D~~  145 (195)
T d1kk1a3          83 IDAPGHEA------------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQ-----KNIIIAQNKIELV  145 (195)
T ss_dssp             EECSSHHH------------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-----CCEEEEEECGGGS
T ss_pred             eccchhhh------------hhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcC-----ccceeeeecccch
Confidence            99999653            24455566788999999999987654443 234444454442     2488999999998


Q ss_pred             CChhH---HHHHHHHHhcCC-CCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          271 TKKKD---LLKVAEQFKHLP-GYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       271 ~~~~~---~~~~~~~~~~~~-~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      +....   .......+.... ...+++++||++|+||++|++.|.+.++
T Consensus       146 d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         146 DKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             CHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            75422   222222232221 2246899999999999999999988653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.9e-18  Score=141.93  Aligned_cols=172  Identities=21%  Similarity=0.212  Sum_probs=96.0

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES  215 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  215 (322)
                      ....++|+++|.||||||||+|+|++.+........+++...........+......++++........ ..........
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   91 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEM-KRKWQRALGE   91 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CC-HHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhh-hhhhhhhhhh
Confidence            446799999999999999999999998766666556665555554444444444444444433222211 1111122222


Q ss_pred             HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcCCCCCcE
Q 020714          216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERI  292 (322)
Q Consensus       216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~  292 (322)
                      ........+.++.+.+.........   ..++..+...   ..++++++||+|+.....   ..+...+.+....+..++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLKDLD---QQMIEWAVDS---NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  165 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHH---HHHHHHHHHT---TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             hhhhhhheeEEEEeecccccchhHH---HHHHHHhhhc---cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcE
Confidence            2233455566666677655432222   2333333332   345999999999987532   223334455555566689


Q ss_pred             EEeecCCCCCHHHHHHHHHHHh
Q 020714          293 FMTSGLKGAGLKALTQYLMEQF  314 (322)
Q Consensus       293 ~~iSa~~g~gi~el~~~i~~~l  314 (322)
                      +++||++|.||++|++.|.+.+
T Consensus       166 i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         166 ETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999997754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.77  E-value=2.1e-18  Score=144.74  Aligned_cols=163  Identities=21%  Similarity=0.320  Sum_probs=101.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecC--------CCCceeeeEEEE---------E-------------eeCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR--------KTNTTTHEVLGV---------M-------------TKAD  186 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~--------~~~~t~~~~~~~---------~-------------~~~~  186 (322)
                      +..++|+++|..++|||||+|+|++........        ..+.+.......         .             ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            345899999999999999999998632110000        000000000000         0             0011


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      ..+.++||||...            .+..+...+..+|++|+|+|+..+..... ......+..++.     .|+|+++|
T Consensus        86 r~~~iiD~PGH~d------------f~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i-----~~iIV~vN  148 (205)
T d2qn6a3          86 RRISFIDAPGHEV------------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-----KNLIIVQN  148 (205)
T ss_dssp             EEEEEEECSCHHH------------HHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTC-----CCEEEEEE
T ss_pred             EEEEEeccchHHH------------HHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCC-----ceeeeccc
Confidence            3578999999864            24566677888999999999987653333 234444444442     36899999


Q ss_pred             CCCCCCChhHHH--HHHHHHhcCC--CCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          266 KVDLVTKKKDLL--KVAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       266 K~Dl~~~~~~~~--~~~~~~~~~~--~~~~~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      |+|+........  .....+....  ...+++++||++|.||++|++.|...++.
T Consensus       149 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         149 KVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             cCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            999987543221  1222222221  22478999999999999999999987653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=5.9e-18  Score=141.80  Aligned_cols=146  Identities=18%  Similarity=0.210  Sum_probs=100.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC--------e---eeeecC-----CCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT--------K---VAAVSR-----KTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~--------~---~~~~~~-----~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~  201 (322)
                      ..++|+++|.+++|||||+++|+..        .   ......     ..|.|.+.....+...+..+.|+||||+..| 
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df-   80 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-   80 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh-
Confidence            3589999999999999999999631        0   001111     1277777777777788999999999998754 


Q ss_pred             CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHH-
Q 020714          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA-  280 (322)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~-  280 (322)
                                 ...+...+..+|++|+|+|+..+...+.......+...+..     ++++++||+|+.+..+..+... 
T Consensus        81 -----------~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~-----~iiv~iNK~D~~~~~~~~~~~~~  144 (204)
T d2c78a3          81 -----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP-----YIVVFMNKVDMVDDPELLDLVEM  144 (204)
T ss_dssp             -----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCC-----CEEEEEECGGGCCCHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-----eEEEEEEecccCCCHHHHHHHHH
Confidence                       34555667889999999999888777666666666665522     3788899999987543333222 


Q ss_pred             ---HHHhcC---CCCCcEEEeecCCC
Q 020714          281 ---EQFKHL---PGYERIFMTSGLKG  300 (322)
Q Consensus       281 ---~~~~~~---~~~~~~~~iSa~~g  300 (322)
                         ..+...   ....++++.|+..|
T Consensus       145 ~i~~~l~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         145 EVRDLLNQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             HHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred             HHHHHHHhcCCCcccceeeeeechhh
Confidence               222211   12246788888643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=8.7e-18  Score=139.49  Aligned_cols=165  Identities=13%  Similarity=0.090  Sum_probs=109.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .+||+++|.+|||||||++++....+.. .++.|.    ....+......+.+||++|+..+..            ....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~~-~pTiG~----~~~~~~~~~~~~~~~d~~g~~~~~~------------~~~~   64 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGSG-VPTTGI----IEYPFDLQSVIFRMVDVGGQRSERR------------KWIH   64 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSSC-CCCCSC----EEEEEECSSCEEEEEECCCSTTGGG------------GGGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCC-CceeeE----EEEEEeccceeeeeccccccccccc------------cccc
Confidence            5799999999999999999997665432 222222    2233446678899999999975432            1224


Q ss_pred             hcccccEEEEEEeCCCCCCC---------cHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---------------
Q 020714          219 AVNLFEVLMVVFDVHRHLTS---------PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---------------  274 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~---------~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---------------  274 (322)
                      .+..++.+++++|.++....         ..+....|...+......+.|+++++||+|+.....               
T Consensus        65 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~  144 (200)
T d2bcjq2          65 CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGP  144 (200)
T ss_dssp             GCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSC
T ss_pred             cccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCC
Confidence            57888999999998654211         112344455555555556789999999999753210               


Q ss_pred             ------HHHHHHHHHhcCCCC----CcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714          275 ------DLLKVAEQFKHLPGY----ERIFMTSGLKGAGLKALTQYLMEQFKDLGLK  320 (322)
Q Consensus       275 ------~~~~~~~~~~~~~~~----~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~  320 (322)
                            ........+.+....    ..+++|||++|.||+++|+.|.+.+.+.+++
T Consensus       145 ~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~nl~  200 (200)
T d2bcjq2         145 QRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK  200 (200)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             chhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHhcC
Confidence                  011122233322211    1367899999999999999999999876653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=5.9e-17  Score=133.80  Aligned_cols=159  Identities=16%  Similarity=0.118  Sum_probs=106.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .+||+++|..|||||||++++....++..    +    .....+......+.+|||+|...+..            ....
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~----~----~~~~~~~~~~~~~~i~D~~Gq~~~~~------------~~~~   61 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT----G----IVETHFTFKDLHFKMFDVGGQRSERK------------KWIH   61 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC----S----EEEEEEEETTEEEEEEEECCSGGGGG------------GGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc----c----EEEEEEEeeeeeeeeecccccccccc------------chhh
Confidence            57999999999999999999976554321    1    12223456788899999999986532            1124


Q ss_pred             hcccccEEEEEEeCCCCCCCc---------HHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh----------------
Q 020714          219 AVNLFEVLMVVFDVHRHLTSP---------DSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----------------  273 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~---------~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~----------------  273 (322)
                      .+..++++++|+|.++..+..         ......+...+........|+++++||+|+....                
T Consensus        62 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~  141 (195)
T d1svsa1          62 CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS  141 (195)
T ss_dssp             GCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSC
T ss_pred             cccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCc
Confidence            578899999999986543221         1233345555555555678999999999963210                


Q ss_pred             ----hHHHHHHHHHhcCC---C--CCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714          274 ----KDLLKVAEQFKHLP---G--YERIFMTSGLKGAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       274 ----~~~~~~~~~~~~~~---~--~~~~~~iSa~~g~gi~el~~~i~~~l~~~  317 (322)
                          .........+....   +  ...+++|||++|.||+++|+.+.+.+.++
T Consensus       142 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         142 NTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             SSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                11112223333321   1  11356899999999999999999988754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=3.2e-16  Score=131.19  Aligned_cols=119  Identities=13%  Similarity=0.115  Sum_probs=73.7

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV  220 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  220 (322)
                      +|+++|.+|||||||+|+|++..+....+..+++..... .....+..+.+||+||...+           ........+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~d~~g~~~~-----------~~~~~~~~~   69 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYK-VNNNRGNSLTLIDLPGHESL-----------RFQLLDRFK   69 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEE-CSSTTCCEEEEEECCCCHHH-----------HHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEE-Eeeeeeeeeeeeeccccccc-----------cchhhhhhh
Confidence            589999999999999999998776554433333322211 11223567899999997521           112222346


Q ss_pred             ccccEEEEEEeCCCCCCCcHH---HHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          221 NLFEVLMVVFDVHRHLTSPDS---RVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       221 ~~ad~ii~v~D~s~~~~~~~~---~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      ..++.+++|+|+++.......   .+..++..... .....|+++|+||+|+...
T Consensus        70 ~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~-~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          70 SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA-LKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT-STTCCEEEEEEECTTSTTC
T ss_pred             hhccccceEEEcccccccHHHHHHHHHHHHHhHHH-hhcCCcEEEEEECcccCCC
Confidence            788999999999653221111   11222222221 1234789999999999764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.2e-16  Score=131.07  Aligned_cols=165  Identities=13%  Similarity=0.133  Sum_probs=101.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      +.+||+++|.+|||||||++++...  ....+    |.......+...+..+.+||++|+......            ..
T Consensus         1 r~iKivllG~~~vGKTsll~r~~f~--~~~~p----TiG~~~~~~~~~~~~~~~~D~~gq~~~~~~------------~~   62 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMRII--HGQDP----TKGIHEYDFEIKNVPFKMVDVGGQRSERKR------------WF   62 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH--HSCCC----CSSEEEEEEEETTEEEEEEEECC-------------------CT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcC--CCCCC----eeeeEEEEEeeeeeeeeeecccceeeeccc------------cc
Confidence            3589999999999999999999321  11122    222333335567889999999998754321            22


Q ss_pred             hhcccccEEEEEEeCCCCCCCc--------HHHHHHHHH-HhcccCCCCCcEEEEEeCCCCCCCh---------------
Q 020714          218 SAVNLFEVLMVVFDVHRHLTSP--------DSRVIRLIE-RMGKQAPPKQKRVLCMNKVDLVTKK---------------  273 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~~~~--------~~~~~~~l~-~~~~~~~~~~p~ivV~NK~Dl~~~~---------------  273 (322)
                      ..+..++.+++++|.++.....        ......+.. .+......+.|+++|+||+|+....               
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~  142 (200)
T d1zcba2          63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEG  142 (200)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCS
T ss_pred             ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccC
Confidence            4567889999999997654321        112223333 3344444578999999999975310               


Q ss_pred             ------hHHHHHHHHHhcCCC---C--CcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714          274 ------KDLLKVAEQFKHLPG---Y--ERIFMTSGLKGAGLKALTQYLMEQFKDLGLK  320 (322)
Q Consensus       274 ------~~~~~~~~~~~~~~~---~--~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~  320 (322)
                            ...+.....+.....   .  ..++++||+++.||+++|+.+.+.+.+.+++
T Consensus       143 ~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~l~  200 (200)
T d1zcba2         143 DPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK  200 (200)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHhcC
Confidence                  111222233332211   1  1246799999999999999999988776543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=8.4e-16  Score=128.40  Aligned_cols=121  Identities=15%  Similarity=0.239  Sum_probs=80.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .++|+++|.||||||||+|+|++.+..     +++|+..........+..+.+|||||......     ...   .....
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~-----~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~---~~~~~   69 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY-----KLS---DYLKT   69 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC-----CBCCCSSCEEETTGGGSSCEEEECCCCGGGTH-----HHH---HHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC-----CeEEecceEEEEEeCCeEEEEEecccccchhh-----HHH---HHHHH
Confidence            357999999999999999999987643     44555555555566788899999999874321     111   22223


Q ss_pred             hcccccEEEEEEeCCCCCCCcHH---HHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          219 AVNLFEVLMVVFDVHRHLTSPDS---RVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       219 ~~~~ad~ii~v~D~s~~~~~~~~---~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      ....++.+++++|+.......+.   .+..++..+......+.|+++|+||+|+...
T Consensus        70 ~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          70 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            45666899999998654333222   1222333333334456889999999999764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.66  E-value=8.9e-16  Score=129.77  Aligned_cols=153  Identities=17%  Similarity=0.224  Sum_probs=99.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC--ee--------eee----------------------cCCCCceeeeEEEEEe
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT--KV--------AAV----------------------SRKTNTTTHEVLGVMT  183 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~--~~--------~~~----------------------~~~~~~t~~~~~~~~~  183 (322)
                      .+..++++++|..++|||||+++|+..  .+        ...                      ....+.|.......+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            345788999999999999999999621  00        000                      1111233333333445


Q ss_pred             eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714          184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC  263 (322)
Q Consensus       184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV  263 (322)
                      ..+..+.++||||...|            ...+...+..+|++++|+|+..+...+.......+..++..     .+|++
T Consensus        86 ~~~~~~~iiD~PGH~df------------v~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~-----~iiv~  148 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQY------------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIK-----HIVVA  148 (222)
T ss_dssp             CSSEEEEEEECCCSGGG------------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-----EEEEE
T ss_pred             ccceEEEEEeccchhhh------------hhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCC-----EEEEE
Confidence            56778999999999864            34455567888999999999887766655565666665522     38999


Q ss_pred             EeCCCCCCChhH-HHH---HHHHHhcCCCC----CcEEEeecCCCCCHHH
Q 020714          264 MNKVDLVTKKKD-LLK---VAEQFKHLPGY----ERIFMTSGLKGAGLKA  305 (322)
Q Consensus       264 ~NK~Dl~~~~~~-~~~---~~~~~~~~~~~----~~~~~iSa~~g~gi~e  305 (322)
                      +||+|+....+. ...   ....+.+..++    .+++++||++|+||.+
T Consensus       149 vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         149 INKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             EECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             EEccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            999999875432 222   22333333333    2579999999999843

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.65  E-value=9.2e-16  Score=132.85  Aligned_cols=134  Identities=21%  Similarity=0.278  Sum_probs=96.8

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE  214 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  214 (322)
                      .....++|+++|.||||||||+|.|++.....++..+++|+..........+..+.++||||+.....  ........+.
T Consensus        28 ~~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~--~~~~~~~~i~  105 (257)
T d1h65a_          28 EDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY--INDMALNIIK  105 (257)
T ss_dssp             TTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE--ECHHHHHHHH
T ss_pred             cCCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcc--hHHHHHHHHH
Confidence            34568999999999999999999999999888888889999888888888899999999999975432  1122222222


Q ss_pred             HHHhhcccccEEEEEEeCCCC-CCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          215 SAWSAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       215 ~~~~~~~~ad~ii~v~D~s~~-~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      . .......+++++|++.+.. .+..+......+..+-.... ..++++|+||+|....
T Consensus       106 ~-~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~-~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         106 S-FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI-WNKAIVALTHAQFSPP  162 (257)
T ss_dssp             H-HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECCSCCCG
T ss_pred             H-HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhh-hhCEEEEEECcccCCc
Confidence            2 2334567899999988543 44555555555554322111 2468999999999864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.1e-15  Score=140.46  Aligned_cols=166  Identities=19%  Similarity=0.234  Sum_probs=104.1

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCeeee----ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHH
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA----VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKV  211 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  211 (322)
                      ...+++|+|+|.||||||||+|+|+|.....    .....++|.+.... ....+..+.||||||+.....  ...   .
T Consensus        53 ~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~-~~~~~~~~~l~DtPG~~~~~~--~~~---~  126 (400)
T d1tq4a_          53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY-KHPNIPNVVFWDLPGIGSTNF--PPD---T  126 (400)
T ss_dssp             HHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE-ECSSCTTEEEEECCCGGGSSC--CHH---H
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeee-eccCCCeEEEEeCCCcccccc--cHH---H
Confidence            3467999999999999999999999854322    22234456554432 334566799999999976432  111   1


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC-----------h-hHHHHH
Q 020714          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----------K-KDLLKV  279 (322)
Q Consensus       212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~-----------~-~~~~~~  279 (322)
                      .+.  ...+..+|+++++.|.  +.+..+..+..++...      ++|+++|+||+|....           . ...+..
T Consensus       127 ~~~--~~~~~~~d~~l~~~~~--~~~~~d~~l~~~l~~~------~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~i  196 (400)
T d1tq4a_         127 YLE--KMKFYEYDFFIIISAT--RFKKNDIDIAKAISMM------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI  196 (400)
T ss_dssp             HHH--HTTGGGCSEEEEEESS--CCCHHHHHHHHHHHHT------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred             HHH--HhhhhcceEEEEecCC--CCCHHHHHHHHHHHHc------CCCEEEEEeCcccccchhhhcccccccHHHHHHHH
Confidence            111  1245677888887764  4455555555555554      3579999999996411           0 111111


Q ss_pred             ----HHHHhcC-CCCCcEEEeecCC--CCCHHHHHHHHHHHhhhc
Q 020714          280 ----AEQFKHL-PGYERIFMTSGLK--GAGLKALTQYLMEQFKDL  317 (322)
Q Consensus       280 ----~~~~~~~-~~~~~~~~iSa~~--g~gi~el~~~i~~~l~~~  317 (322)
                          ...+... ...+++|.+|...  ..|+.+|.+++.+.+.+.
T Consensus       197 r~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         197 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence                2223322 2345789999764  559999999999988764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=8.3e-15  Score=130.54  Aligned_cols=158  Identities=15%  Similarity=0.212  Sum_probs=91.9

Q ss_pred             hhhccCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCceeee--EEE---------------E--E-----
Q 020714          133 KEEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHE--VLG---------------V--M-----  182 (322)
Q Consensus       133 ~~~~~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t~~~--~~~---------------~--~-----  182 (322)
                      .+...+.++|+|+|+||||||||+|+|.      +.+++.....|.++...  ..+               +  .     
T Consensus        48 ~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~  127 (327)
T d2p67a1          48 MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGH  127 (327)
T ss_dssp             GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC---
T ss_pred             hhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccc
Confidence            3556779999999999999999999986      34454433333322110  000               0  0     


Q ss_pred             ---------------eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHH
Q 020714          183 ---------------TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI  247 (322)
Q Consensus       183 ---------------~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l  247 (322)
                                     ...|.++.|++|.|....               .......+|.+++|.+...+...  ......+
T Consensus       128 lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~---------------e~~i~~~aD~~l~v~~P~~Gd~i--q~~k~gi  190 (327)
T d2p67a1         128 LGGASQRARELMLLCEAAGYDVVIVETVGVGQS---------------ETEVARMVDCFISLQIAGGGDDL--QGIKKGL  190 (327)
T ss_dssp             --CHHHHHHHHHHHHHHTTCSEEEEEEECCTTH---------------HHHHHTTCSEEEEEECC--------CCCCHHH
T ss_pred             cccchhhhhHHHHHHHhcCCCeEEEeecccccc---------------chhhhhccceEEEEecCCCchhh--hhhchhh
Confidence                           001345667777766421               11234667999999987543211  1122333


Q ss_pred             HHhcccCCCCCcEEEEEeCCCCCCChhH---HHHHHHHHh-----cCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          248 ERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFK-----HLPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       248 ~~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~~~~~~-----~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .++.        .++|+||+|+......   ..+....+.     ...+.++++.|||++|+||++|++.|.++..
T Consensus       191 ~e~a--------Di~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         191 MEVA--------DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             HHHC--------SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             hccc--------cEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            3332        6899999998764321   111122211     1234467999999999999999999987654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.56  E-value=2.8e-14  Score=123.72  Aligned_cols=115  Identities=23%  Similarity=0.287  Sum_probs=79.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC-----eeee------------ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT-----KVAA------------VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK  201 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~-----~~~~------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~  201 (322)
                      .-+|+++|..++|||||+.+|+..     +...            ....-+.|.......+...+..+.|+||||...|.
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence            347999999999999999998621     1111            11122444455555577889999999999999875


Q ss_pred             CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT  271 (322)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~  271 (322)
                      .            .+...+..+|.+|+|+|+.++...+...+..+....      +.|.++++||+|...
T Consensus        86 ~------------e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~------~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          86 I------------EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY------KVPRIAFANKMDKTG  137 (276)
T ss_dssp             T------------THHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTT------TCCEEEEEECTTSTT
T ss_pred             H------------HHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHc------CCCEEEEEecccccc
Confidence            4            222345667999999999887655555555544433      467999999999875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.56  E-value=2.2e-15  Score=126.39  Aligned_cols=144  Identities=20%  Similarity=0.170  Sum_probs=89.9

Q ss_pred             CCCCCCCCCChhhHHHHHH--hhCCeEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCc
Q 020714           63 PQNNNAAKKQEPTWDEKYR--ERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS  139 (322)
Q Consensus        63 ~k~dl~~~~~~~~w~~~~~--~~~~~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  139 (322)
                      ||+||.+++..+.|..++.  ..++.+++.++ +..+...+              +..    +               .+
T Consensus        49 nK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L--------------~~~----l---------------~~   95 (225)
T d1u0la2          49 NKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEEL--------------KEY----L---------------KG   95 (225)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH--------------HHH----H---------------SS
T ss_pred             eCcccCCHHHHHHHHHhhcccccceeEEEeccccchhHhhH--------------HHH----h---------------cC
Confidence            9999999887777776554  33567888888 77776666              111    1               12


Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeee---ec----CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC-CChhhHHH
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAA---VS----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG-YSHKDVKV  211 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~---~~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~~~~~~~~  211 (322)
                      -..+++|++|||||||||+|.+.....   ++    ...+||+......+..+   ..++||||+..+... ...+    
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~l~~~~~~----  168 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLEINDIEPE----  168 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCCCCSSCHH----
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccccccccCcc----
Confidence            357899999999999999998764332   22    23356666665443333   499999999877642 2222    


Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER  249 (322)
Q Consensus       212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~  249 (322)
                      .+...+.++....  +- |.-+.|..++.+.+...++.
T Consensus       169 ~l~~~F~e~~~~~--Ck-F~dC~H~~EpgCaVk~av~~  203 (225)
T d1u0la2         169 ELKHYFKEFGDKQ--CF-FSDCNHVDEPECGVKEAVEN  203 (225)
T ss_dssp             HHGGGSTTSSSCC--CS-STTCCSSSCSSCHHHHHHHH
T ss_pred             hhhhhhhhHHhCC--CC-CCCCCCCCCCCCHHHHHHHc
Confidence            3444444543211  11 33346667777777776654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=1.9e-15  Score=127.19  Aligned_cols=145  Identities=18%  Similarity=0.193  Sum_probs=93.2

Q ss_pred             CCCCCCCCCC----hhhHHHHHHhhCCeEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcc
Q 020714           63 PQNNNAAKKQ----EPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQ  137 (322)
Q Consensus        63 ~k~dl~~~~~----~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  137 (322)
                      ||+||.+.+.    .+.|...|...++.++..++ ++.|...+.                                ... 
T Consensus        49 nK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~--------------------------------~~l-   95 (231)
T d1t9ha2          49 TKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADII--------------------------------PHF-   95 (231)
T ss_dssp             ECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTG--------------------------------GGG-
T ss_pred             ecccccccHHHHHHHHHHHHHHhhccccceeeecCChhHHHHHH--------------------------------Hhh-
Confidence            8999987654    34566778888999999999 777877771                                111 


Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeee---ecCCC----CceeeeEEEEEeeCCccEEEEeCCCcccCCC-CCChhhH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA---VSRKT----NTTTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDV  209 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~---~~~~~----~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~  209 (322)
                      ..-..+++|++|||||||||+|.+.....   ++...    +||+..... . .+|  -.++||||+..+.. ......+
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~-~-~~g--g~iiDTPG~r~~~l~~~~~~~l  171 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI-H-TSG--GLVADTPGFSSLEFTDIEEEEL  171 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE-E-ETT--EEEESSCSCSSCCCTTCCHHHH
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEE-e-cCC--CEEEECCccccccccccCcccc
Confidence            12346799999999999999999864332   22222    355554432 2 332  37899999988764 3455555


Q ss_pred             HHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714          210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER  249 (322)
Q Consensus       210 ~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~  249 (322)
                      ...|.........|.     |.-+.|..++.+.+...++.
T Consensus       172 ~~~F~ei~~~~~~Ck-----F~dC~H~~EpgCaV~~av~~  206 (231)
T d1t9ha2         172 GYTFPDIREKSSSCK-----FRGCLHLKEPKCAVKQAVED  206 (231)
T ss_dssp             GGGSHHHHHHGGGCS-----STTCCSSSCSSCHHHHHHHH
T ss_pred             hhhhhhHHHHhCCCC-----CCCCCCCCCCCchHHHHHHc
Confidence            556666655555555     44456778888888777664

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.53  E-value=7.2e-14  Score=120.76  Aligned_cols=112  Identities=18%  Similarity=0.291  Sum_probs=80.0

Q ss_pred             EEEEEcCCCCchhHHHHHHhCC-----eeeeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC
Q 020714          141 AVGIIGAPNAGKSSIINYMVGT-----KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG  203 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~-----~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~  203 (322)
                      +|+++|..++|||||+.+|+..     +...+.            ..-+.|.......+...+..+.++||||...|   
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF---   80 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF---   80 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG---
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhh---
Confidence            6899999999999999998521     100011            11234555555567788899999999999865   


Q ss_pred             CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714          204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV  270 (322)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~  270 (322)
                               ...+...+..+|.+++|+|+..+...+...+...+...+      .|.++++||+|..
T Consensus        81 ---------~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~------~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 ---------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLG------LPRMVVVTKLDKG  132 (267)
T ss_dssp             ---------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTT------CCEEEEEECGGGC
T ss_pred             ---------hhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhcc------ccccccccccccc
Confidence                     234445567789999999998876665555555555543      5699999999974

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.52  E-value=1.3e-14  Score=129.15  Aligned_cols=158  Identities=19%  Similarity=0.244  Sum_probs=94.9

Q ss_pred             hhhccCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCcee-----------------eeEEEE--------
Q 020714          133 KEEDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTT-----------------HEVLGV--------  181 (322)
Q Consensus       133 ~~~~~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t~-----------------~~~~~~--------  181 (322)
                      .+...+.++|+|.|+||||||||+++|..      .+++.+...|.++.                 +.....        
T Consensus        45 ~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~  124 (323)
T d2qm8a1          45 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGT  124 (323)
T ss_dssp             GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSS
T ss_pred             hhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeecccccccc
Confidence            34566789999999999999999999863      23332222221111                 000000        


Q ss_pred             --------------EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHH
Q 020714          182 --------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI  247 (322)
Q Consensus       182 --------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l  247 (322)
                                    +...|..+.|+.|.|....       .        ......+|..++|+....+  +.-+....-+
T Consensus       125 ~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~-------e--------~~~~~~~D~~v~v~~p~~G--D~iQ~~k~gi  187 (323)
T d2qm8a1         125 LGGVAAKTRETMLLCEAAGFDVILVETVGVGQS-------E--------TAVADLTDFFLVLMLPGAG--DELQGIKKGI  187 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC-------H--------HHHHTTSSEEEEEECSCC--------CCTTH
T ss_pred             ccchhHHHHHHHHhhccCCCCeEEEeehhhhhh-------h--------hhhhcccceEEEEeeccch--hhhhhhhhhH
Confidence                          0113467788888887532       0        0223557999999988543  2111121222


Q ss_pred             HHhcccCCCCCcEEEEEeCCCCCCChhHHHHHH----HHHh-----cCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714          248 ERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA----EQFK-----HLPGYERIFMTSGLKGAGLKALTQYLMEQFK  315 (322)
Q Consensus       248 ~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~----~~~~-----~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~  315 (322)
                      .+        ...++|+||+|+...........    ..+.     ...+.++++.+||++|+|+++|+++|.++..
T Consensus       188 lE--------~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         188 FE--------LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HH--------HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             hh--------hhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            22        23699999999887644332222    1111     1124568999999999999999999987754

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=1.4e-14  Score=124.20  Aligned_cols=155  Identities=16%  Similarity=0.217  Sum_probs=86.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC---Cee---------------------e------eecCCCCceeeeEEEEEeeCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG---TKV---------------------A------AVSRKTNTTTHEVLGVMTKAD  186 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~---~~~---------------------~------~~~~~~~~t~~~~~~~~~~~~  186 (322)
                      +..++|+++|..++|||||+.+|+.   .-.                     .      ......+.+.......+...+
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            4467899999999999999999842   100                     0      011111223222222344556


Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-------CCcHHHHHHHHHHhcccCCCCCc
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQK  259 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-------~~~~~~~~~~l~~~~~~~~~~~p  259 (322)
                      ..+.++||||...|.            ..+......+|++++|+|+..+.       ..+.......+..++.     .+
T Consensus       102 ~~i~~iDtPGH~df~------------~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i-----~~  164 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYV------------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGI-----NH  164 (245)
T ss_dssp             EEEEECCCCC-----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTC-----SS
T ss_pred             ceeeeecccccccch------------hhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCC-----Ce
Confidence            789999999998653            34445568889999999997652       1133344444444442     23


Q ss_pred             EEEEEeCCCCCCCh---hHHHHH----HHHHhcCCCC-----CcEEEeecCCCCCHHHHHH
Q 020714          260 RVLCMNKVDLVTKK---KDLLKV----AEQFKHLPGY-----ERIFMTSGLKGAGLKALTQ  308 (322)
Q Consensus       260 ~ivV~NK~Dl~~~~---~~~~~~----~~~~~~~~~~-----~~~~~iSa~~g~gi~el~~  308 (322)
                      +++++||+|+....   ....+.    ...+.+..+.     .+++++||++|+||.++++
T Consensus       165 iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         165 LVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             EEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             EEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            88999999997432   222222    2222222221     2689999999999987653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.52  E-value=1.8e-14  Score=121.80  Aligned_cols=165  Identities=15%  Similarity=0.155  Sum_probs=106.8

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ..+||+++|.+|||||||++++...+..   ++.|    .....+...+..+.+||++|+......            ..
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~---pTiG----~~~~~~~~~~~~~~~~D~~Gq~~~r~~------------w~   65 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV---LTSG----IFETKFQVDKVNFHMFDVGGQRDERRK------------WI   65 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC---CCCS----CEEEEEEETTEEEEEEECCCSTTTTTG------------GG
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC---CCCC----eEEEEEEECcEEEEEEecCccceeccc------------hh
Confidence            3689999999999999999999654321   2223    222334567889999999999865431            12


Q ss_pred             hhcccccEEEEEEeCCCCC--------CC-cHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH-------------
Q 020714          218 SAVNLFEVLMVVFDVHRHL--------TS-PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-------------  275 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s~~~--------~~-~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~-------------  275 (322)
                      ..+..++++++++|.++..        .. ..+....+...+......+.|+++++||+|+......             
T Consensus        66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~  145 (221)
T d1azta2          66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEF  145 (221)
T ss_dssp             GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGG
T ss_pred             hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccc
Confidence            4568889999999986431        11 1122223334444445567899999999998532100             


Q ss_pred             ------------------HHH----HHHHHhc---CCCC--C--cEEEeecCCCCCHHHHHHHHHHHhhhcCCcC
Q 020714          276 ------------------LLK----VAEQFKH---LPGY--E--RIFMTSGLKGAGLKALTQYLMEQFKDLGLKI  321 (322)
Q Consensus       276 ------------------~~~----~~~~~~~---~~~~--~--~~~~iSa~~g~gi~el~~~i~~~l~~~~~~~  321 (322)
                                        ...    +...+..   ....  .  -+.++||.++.+|+.+|+.+.+.+.+..++.
T Consensus       146 ~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~l~~  220 (221)
T d1azta2         146 ARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQ  220 (221)
T ss_dssp             GGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred             cccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHHhhc
Confidence                              000    1122221   1111  1  1457999999999999999998888877664

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.51  E-value=4.2e-14  Score=120.51  Aligned_cols=167  Identities=16%  Similarity=0.144  Sum_probs=93.5

Q ss_pred             EEEEEcCCCCchhHHHHHHhC-----CeeeeecCCCCceeeeEEEEE---------------------------------
Q 020714          141 AVGIIGAPNAGKSSIINYMVG-----TKVAAVSRKTNTTTHEVLGVM---------------------------------  182 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~-----~~~~~~~~~~~~t~~~~~~~~---------------------------------  182 (322)
                      .|+|+|++|+|||||+++|+.     +....+...++++........                                 
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKF   81 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTTH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHhhhccCCchhhhhHhHHhhH
Confidence            588999999999999999962     333333333333211000000                                 


Q ss_pred             ---------eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc
Q 020714          183 ---------TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ  253 (322)
Q Consensus       183 ---------~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~  253 (322)
                               ......+.++|+||+..+..      ....... +......+.+++++|+......+ ......+......
T Consensus        82 ~~~~~~~~~~~~~~~~~~id~~g~~~~~~------~~~~~~~-~~~~~~~~~~v~vvd~~~~~~~~-~~~~~~l~~~~~~  153 (244)
T d1yrba1          82 NEYLNKILRLEKENDYVLIDTPGQMETFL------FHEFGVR-LMENLPYPLVVYISDPEILKKPN-DYCFVRFFALLID  153 (244)
T ss_dssp             HHHHHHHHHHHHHCSEEEEECCSSHHHHH------HSHHHHH-HHHTSSSCEEEEEECGGGCCSHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccceeeeccccchhHHH------HHHHHHH-HHhhccCceEEEEeccccccCch-hHhhHHHHHHHHH
Confidence                     00124589999999974311      1111111 12233457899999985443222 2111111111100


Q ss_pred             CCCCCcEEEEEeCCCCCCChhHHH---------------------------HHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          254 APPKQKRVLCMNKVDLVTKKKDLL---------------------------KVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       254 ~~~~~p~ivV~NK~Dl~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      ..-..|.++|+||+|+........                           .......+..+..+++++||++|+|+++|
T Consensus       154 ~~~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L  233 (244)
T d1yrba1         154 LRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL  233 (244)
T ss_dssp             HHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHH
T ss_pred             HHhCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHH
Confidence            001356999999999987532100                           00111122345567999999999999999


Q ss_pred             HHHHHHHhh
Q 020714          307 TQYLMEQFK  315 (322)
Q Consensus       307 ~~~i~~~l~  315 (322)
                      +++|.+++.
T Consensus       234 ~~~l~e~~~  242 (244)
T d1yrba1         234 ETLAYEHYC  242 (244)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999998754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=2.4e-14  Score=122.16  Aligned_cols=150  Identities=16%  Similarity=0.212  Sum_probs=97.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC---C------------------e---------eeeecCCCCceeeeEEEEEeeCCcc
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG---T------------------K---------VAAVSRKTNTTTHEVLGVMTKADTQ  188 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~---~------------------~---------~~~~~~~~~~t~~~~~~~~~~~~~~  188 (322)
                      .++|+++|..++|||||+.+|+.   .                  .         ........|.|.+.....+...+..
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~   85 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   85 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence            47999999999999999999852   1                  0         0011122356666555556677889


Q ss_pred             EEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-------CCcHHHHHHHHHHhcccCCCCCcEE
Q 020714          189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQKRV  261 (322)
Q Consensus       189 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-------~~~~~~~~~~l~~~~~~~~~~~p~i  261 (322)
                      +.|+||||...|            ...+...+..+|++|+|+|+..+.       ..+......+...++.     .++|
T Consensus        86 i~iiDtPGH~df------------~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv-----~~ii  148 (239)
T d1f60a3          86 VTVIDAPGHRDF------------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV-----RQLI  148 (239)
T ss_dssp             EEEEECCCCTTH------------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTC-----CEEE
T ss_pred             EEEEECCCcHHH------------HHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCC-----CeEE
Confidence            999999999754            455567788999999999996541       1122333344444442     2488


Q ss_pred             EEEeCCCCCCChhH-HHHH---HHHHhcCCC----CCcEEEeecCCCCCHHH
Q 020714          262 LCMNKVDLVTKKKD-LLKV---AEQFKHLPG----YERIFMTSGLKGAGLKA  305 (322)
Q Consensus       262 vV~NK~Dl~~~~~~-~~~~---~~~~~~~~~----~~~~~~iSa~~g~gi~e  305 (322)
                      +++||+|+...... ....   ...+....+    ..+++++|+..|.|+-+
T Consensus       149 v~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         149 VAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             EEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            99999999875432 2221   122221111    23579999999998733

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.50  E-value=8.6e-14  Score=117.78  Aligned_cols=150  Identities=17%  Similarity=0.224  Sum_probs=89.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCe------------------------------eeeecCCCCceeeeEEEEEeeCCcc
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTK------------------------------VAAVSRKTNTTTHEVLGVMTKADTQ  188 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~------------------------------~~~~~~~~~~t~~~~~~~~~~~~~~  188 (322)
                      .++|+++|..++|||||+.+|+...                              ........|.|.......+...+..
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            5799999999999999999885210                              0011222344444444445567788


Q ss_pred             EEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCC-------CcHHHHHHHHHHhcccCCCCCcEE
Q 020714          189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQKRV  261 (322)
Q Consensus       189 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~-------~~~~~~~~~l~~~~~~~~~~~p~i  261 (322)
                      +.|+||||...|            ...+...+..+|++|+|+|+..+..       .+..+.......++     ..++|
T Consensus        83 i~iiDtPGH~df------------~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~-----~~~iI  145 (224)
T d1jnya3          83 FTIIDAPGHRDF------------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG-----LDQLI  145 (224)
T ss_dssp             EEECCCSSSTTH------------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT-----CTTCE
T ss_pred             eEEeeCCCcHHH------------HHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhC-----CCceE
Confidence            999999999754            3455567888999999999976521       11112222233332     23589


Q ss_pred             EEEeCCCCCCCh---hHHHH---HHHHHhcC----CCCCcEEEeecCCCCCHHH
Q 020714          262 LCMNKVDLVTKK---KDLLK---VAEQFKHL----PGYERIFMTSGLKGAGLKA  305 (322)
Q Consensus       262 vV~NK~Dl~~~~---~~~~~---~~~~~~~~----~~~~~~~~iSa~~g~gi~e  305 (322)
                      +++||+|+....   ...+.   ....+...    ....+++++||.+|.|+.+
T Consensus       146 v~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         146 VAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             EEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             EEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            999999997532   11221   12222111    1223579999999999854

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=2.3e-12  Score=113.35  Aligned_cols=92  Identities=20%  Similarity=0.277  Sum_probs=70.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-----------------ccEEEEeCCCccc
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLML  199 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~  199 (322)
                      ...++|+++|.||||||||+|+|++...+.+++.|+||.++..+......                 ..+.++|.||+..
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            35689999999999999999999987777788999999887766644322                 3578999999986


Q ss_pred             CCCC-CChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714          200 NKSG-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (322)
Q Consensus       200 ~~~~-~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~  234 (322)
                      .... .+.      -.+.+..++.||++++|+|+..
T Consensus        88 gA~~g~GL------Gn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGL------GNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSS------CHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccc------HHHHHHHhhccceeEEEEeccC
Confidence            5321 111      1345677899999999999854

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.23  E-value=1.3e-11  Score=107.56  Aligned_cols=89  Identities=21%  Similarity=0.279  Sum_probs=61.1

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-----------------ccEEEEeCCCcccCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNK  201 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~  201 (322)
                      .++|++||.||||||||+|+|++... .+++.|++|..+..++....+                 ..+.++|.||+....
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~-~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCC-ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            47899999999999999999998764 567788888777666654322                 247899999997431


Q ss_pred             CCCChhhHHHHHHHHHhhcccccEEEEEEeCC
Q 020714          202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH  233 (322)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s  233 (322)
                      .     .-.-.-.+.+..++.||++++|+|+.
T Consensus        81 ~-----~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 S-----KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             H-----HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             c-----cCCCccHHHHHHHHhccceEEEeecc
Confidence            1     11111124567789999999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.17  E-value=1.2e-11  Score=109.88  Aligned_cols=89  Identities=20%  Similarity=0.283  Sum_probs=48.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe------------------------eCCccEEEEeCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT------------------------KADTQICIFDTP  195 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~------------------------~~~~~~~l~Dtp  195 (322)
                      ++|+++|.||||||||+|+|++.+ ..+++.|+||.++..++..                        .....+.++|+|
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~-~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCC-CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            479999999999999999999875 4678889888776555321                        011358999999


Q ss_pred             CcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714          196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR  234 (322)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~  234 (322)
                      |+.....     .......+.+..++.+|++++|+|+..
T Consensus        80 Gli~ga~-----~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          80 GLVPGAH-----EGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------------CCCSSTTCSEEEEEEETTC
T ss_pred             Ccccchh-----cccchHHHHHHhhccceEEEEEecccc
Confidence            9975321     112334556677899999999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=5.3e-10  Score=97.95  Aligned_cols=130  Identities=17%  Similarity=0.303  Sum_probs=78.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEE------------------------------------
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV------------------------------------  181 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------  181 (322)
                      ..++|+|+|.-++|||||||+|+|..+..++..+. |...+...                                    
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~-T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV-TRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCS-CSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCcc-ccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHh
Confidence            45689999999999999999999987654444332 21111111                                    


Q ss_pred             ----------------EeeCCccEEEEeCCCcccCCCCCChhhHHHHH-HHHHhhccccc-EEEEEEeCCCCCCCcHHHH
Q 020714          182 ----------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRV-ESAWSAVNLFE-VLMVVFDVHRHLTSPDSRV  243 (322)
Q Consensus       182 ----------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~ad-~ii~v~D~s~~~~~~~~~~  243 (322)
                                      ....-..+.|+||||+...............+ ..+..++..++ ++++|.++....+..  ..
T Consensus       104 ~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~--~~  181 (299)
T d2akab1         104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS--DA  181 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGC--HH
T ss_pred             hCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhh--HH
Confidence                            00112458899999998654433323322222 22333444555 566677775544333  34


Q ss_pred             HHHHHHhcccCCCCCcEEEEEeCCCCCCCh
Q 020714          244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKK  273 (322)
Q Consensus       244 ~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~  273 (322)
                      ..+++.+...   ..++++|+||+|.....
T Consensus       182 ~~~~~~~~~~---~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         182 LKIAKEVDPQ---GQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHHHCTT---CSSEEEEEECGGGSCTT
T ss_pred             HHHHHHhCcC---CCceeeEEeccccccch
Confidence            4566666544   34699999999998653

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=9e-11  Score=104.37  Aligned_cols=114  Identities=20%  Similarity=0.241  Sum_probs=72.0

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCe--ee-------------eecCCCCceeeeEEEEEee----------------CCc
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTK--VA-------------AVSRKTNTTTHEVLGVMTK----------------ADT  187 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~--~~-------------~~~~~~~~t~~~~~~~~~~----------------~~~  187 (322)
                      .-+|+|+|..++|||||+.+|+...  ..             .....-|.|.......+..                .+.
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            3469999999999999999986210  00             0011112232222222211                123


Q ss_pred             cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714          188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV  267 (322)
Q Consensus       188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~  267 (322)
                      .+.|+||||...|..            .+...++.+|++++|+|+..+...+...+.......      +.|+++|+||+
T Consensus        97 ~inliDtPGh~dF~~------------ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~------~~p~i~viNKi  158 (341)
T d1n0ua2          97 LINLIDSPGHVDFSS------------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE------RIKPVVVINKV  158 (341)
T ss_dssp             EEEEECCCCCCSSCH------------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT------TCEEEEEEECH
T ss_pred             EEEEEcCCCcHHHHH------------HHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc------CCCeEEEEECc
Confidence            588999999987632            233445668999999999887666655555544433      35799999999


Q ss_pred             CCC
Q 020714          268 DLV  270 (322)
Q Consensus       268 Dl~  270 (322)
                      |..
T Consensus       159 Dr~  161 (341)
T d1n0ua2         159 DRA  161 (341)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            975

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.03  E-value=1.4e-09  Score=95.51  Aligned_cols=129  Identities=16%  Similarity=0.272  Sum_probs=69.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEE--------------------------------------
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG--------------------------------------  180 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~--------------------------------------  180 (322)
                      .++|+|+|..++|||||||+|+|..+..++..+.|...+...                                      
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            468999999999999999999997754333322111110000                                      


Q ss_pred             ---------------------EEeeCCccEEEEeCCCcccCCCCCChh-hHHHHHHHHHhhcccccEEE-EEEeCCCCCC
Q 020714          181 ---------------------VMTKADTQICIFDTPGLMLNKSGYSHK-DVKVRVESAWSAVNLFEVLM-VVFDVHRHLT  237 (322)
Q Consensus       181 ---------------------~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~~~~~~~ad~ii-~v~D~s~~~~  237 (322)
                                           .....-..+.++||||+.......... ........+..++..++.++ +|.+......
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence                                 011123468899999997543321111 11111222333456677644 4455544433


Q ss_pred             CcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714          238 SPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK  272 (322)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~  272 (322)
                      ...  ...+++.+...   ..++++|+||+|....
T Consensus       184 ~~~--~~~~~~~~~~~---~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         184 NSD--ALQLAKEVDPE---GKRTIGVITKLDLMDK  213 (306)
T ss_dssp             TCS--HHHHHHHHCSS---CSSEEEEEECTTSSCS
T ss_pred             ccH--HHHHHHHhCcC---CCeEEEEEeccccccc
Confidence            332  34556666543   3469999999999754

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.60  E-value=1e-07  Score=78.49  Aligned_cols=153  Identities=15%  Similarity=0.132  Sum_probs=76.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCC----------------CceeeeEEEE-------------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKT----------------NTTTHEVLGV-------------  181 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~----------------~~t~~~~~~~-------------  181 (322)
                      ..+..|+++|++||||||.+-.|..      .++.-+....                +.........             
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~   89 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK   89 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence            3567788999999999999876642      2222111110                1100000000             


Q ss_pred             EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE
Q 020714          182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV  261 (322)
Q Consensus       182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i  261 (322)
                      ....+.++.|+||||......   .......+....... ..+-+++|++++.+..    ........+....    +--
T Consensus        90 ~~~~~~d~IlIDTaGr~~~~~---~~~~~~el~~~~~~~-~~~~~~LVl~a~~~~~----~~~~~~~~~~~~~----~~~  157 (211)
T d1j8yf2          90 FLSEKMEIIIVDTAGRHGYGE---EAALLEEMKNIYEAI-KPDEVTLVIDASIGQK----AYDLASKFNQASK----IGT  157 (211)
T ss_dssp             HHHTTCSEEEEECCCSCCTTC---HHHHHHHHHHHHHHH-CCSEEEEEEEGGGGGG----HHHHHHHHHHHCT----TEE
T ss_pred             hhccCCceEEEecCCcCccch---hhHHHHHHHHHHhhc-CCceEEEEEecccCcc----hHHHHhhhhcccC----cce
Confidence            012456899999999853321   011112233333333 3467899999865321    1222222222211    245


Q ss_pred             EEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHH
Q 020714          262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ  308 (322)
Q Consensus       262 vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~  308 (322)
                      +|+||.|....-......    ....+. |+.++|  +|+++++|..
T Consensus       158 lI~TKlDet~~~G~~l~~----~~~~~l-Pi~~it--~Gq~v~DL~~  197 (211)
T d1j8yf2         158 IIITKMDGTAKGGGALSA----VAATGA-TIKFIG--TGEKIDELEV  197 (211)
T ss_dssp             EEEECTTSCSCHHHHHHH----HHTTTC-CEEEEE--CSSSTTCEEE
T ss_pred             EEEecccCCCcccHHHHH----HHHHCc-CEEEEe--CCCCcccCcc
Confidence            789999987654443322    222444 588888  7999877543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=6.7e-07  Score=73.36  Aligned_cols=150  Identities=19%  Similarity=0.232  Sum_probs=81.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCC----------------CceeeeEEE------EE------
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKT----------------NTTTHEVLG------VM------  182 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~----------------~~t~~~~~~------~~------  182 (322)
                      ..+..|+++|++||||||.+-.|..      .++.-+....                +........      ..      
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~   86 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA   86 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence            3466789999999999999877642      2222111111                110000000      00      


Q ss_pred             -eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcc-----cccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCC
Q 020714          183 -TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN-----LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP  256 (322)
Q Consensus       183 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~  256 (322)
                       ...+.++.|+||||.....     ......+......+.     ..+-+++|+|+..+    ...+......+....  
T Consensus        87 a~~~~~d~ilIDTaGr~~~d-----~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~----~~~~~~~~~~~~~~~--  155 (211)
T d2qy9a2          87 AKARNIDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG----QNAVSQAKLFHEAVG--  155 (211)
T ss_dssp             HHHTTCSEEEECCCCCGGGH-----HHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT----HHHHHHHHHHHHHSC--
T ss_pred             HHHcCCCEEEeccCCCcccc-----HHHHHHHHHHHHHHhhhcccCcceeeeehhcccC----cchHHHHhhhhhccC--
Confidence             0124578999999976321     222233333333332     24678899998543    223333333333221  


Q ss_pred             CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       257 ~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                        +.-+++||.|....-..........    +. |+.+++  +|++|++|
T Consensus       156 --~~~lIlTKlDe~~~~G~~l~~~~~~----~~-Pi~~i~--~Gq~v~Dl  196 (211)
T d2qy9a2         156 --LTGITLTKLDGTAKGGVIFSVADQF----GI-PIRYIG--VGERIEDL  196 (211)
T ss_dssp             --CCEEEEECCTTCTTTTHHHHHHHHH----CC-CEEEEE--CSSSGGGE
T ss_pred             --CceEEEeecCCCCCccHHHHHHHHH----CC-CEEEEe--CCCCcccC
Confidence              2578999999876544444433332    33 688888  88888664

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=1e-07  Score=78.65  Aligned_cols=151  Identities=16%  Similarity=0.195  Sum_probs=82.1

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCC----------------CceeeeEE-------------E
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKT----------------NTTTHEVL-------------G  180 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~----------------~~t~~~~~-------------~  180 (322)
                      ...+..|+++|++||||||.+-.|..      .++.-+....                +.......             .
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~   87 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA   87 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHH
Confidence            34677889999999999999866642      2221111100                00000000             0


Q ss_pred             EEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcc-----cccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC
Q 020714          181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN-----LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP  255 (322)
Q Consensus       181 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~  255 (322)
                      .....+.++.|+||||.....     ......+........     ..+-+++|+|+..    ....+......+.... 
T Consensus        88 ~~~~~~~d~ilIDTaGr~~~d-----~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~----~~~~~~~~~~~~~~~~-  157 (213)
T d1vmaa2          88 HALARNKDVVIIDTAGRLHTK-----KNLMEELRKVHRVVKKKIPDAPHETLLVIDATT----GQNGLVQAKIFKEAVN-  157 (213)
T ss_dssp             HHHHTTCSEEEEEECCCCSCH-----HHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG----HHHHHHHHHHHHHHSC-
T ss_pred             HHHHcCCCEEEEeccccccch-----HHHHHHHHHHHhhhhhccccccceeEEeecccc----CcchhhhhhhhccccC-
Confidence            000135678999999976431     222223333333322     2467899999843    2333444444444322 


Q ss_pred             CCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          256 PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       256 ~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                         +.-+|+||.|....-..........    +. |+.+++  +|+++++|
T Consensus       158 ---~~~lI~TKlDe~~~~G~~l~~~~~~----~~-Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         158 ---VTGIILTKLDGTAKGGITLAIAREL----GI-PIKFIG--VGEKAEDL  198 (213)
T ss_dssp             ---CCEEEEECGGGCSCTTHHHHHHHHH----CC-CEEEEE--CSSSGGGE
T ss_pred             ---CceEEEecccCCCcccHHHHHHHHH----CC-CEEEEe--CCCCcccC
Confidence               2578999999876544443333332    23 688888  78888664

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.47  E-value=2.5e-07  Score=75.91  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=56.7

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc-----ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcE
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV-----NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR  260 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~  260 (322)
                      +.++.|+||||.....     ......+.......     ...+-+++|+|++.+... ..........++.       .
T Consensus        88 ~~d~ilIDTaGr~~~d-----~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~-~~~~~~~~~~~~~-------~  154 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTK-----HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG-LEQAKKFHEAVGL-------T  154 (207)
T ss_dssp             TCSEEEECCCCCCTTC-----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH-HHHHHHHHHHHCC-------S
T ss_pred             CCCEEEcCccccchhh-----HHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchH-HHHHHHhhhccCC-------c
Confidence            4688999999986432     22222222222222     234678899999654211 1122223333332       4


Q ss_pred             EEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHH
Q 020714          261 VLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT  307 (322)
Q Consensus       261 ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~  307 (322)
                      -+++||.|....-..........    +. |+.++|  +|++++++.
T Consensus       155 ~lI~TKlDet~~~G~~l~~~~~~----~~-Pi~~i~--~Gq~p~Dl~  194 (207)
T d1okkd2         155 GVIVTKLDGTAKGGVLIPIVRTL----KV-PIKFVG--VGEGPDDLQ  194 (207)
T ss_dssp             EEEEECTTSSCCCTTHHHHHHHH----CC-CEEEEE--CSSSTTCEE
T ss_pred             eEEEeccCCCCCccHHHHHHHHH----CC-CEEEEe--CCCChHhCc
Confidence            68999999876544444433332    33 577888  688777654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.46  E-value=2.3e-07  Score=79.77  Aligned_cols=94  Identities=16%  Similarity=0.313  Sum_probs=71.9

Q ss_pred             HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCc
Q 020714          212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER  291 (322)
Q Consensus       212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  291 (322)
                      ..++....+..+|+|+.|+|+..+.+..+..+..+++        ++|.|+|+||+|+.+. .....+...+... +. .
T Consensus         5 a~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--------~Kp~IlVlNK~DLv~~-~~~~~w~~~f~~~-~~-~   73 (273)
T d1puja_           5 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--------NKPRIMLLNKADKADA-AVTQQWKEHFENQ-GI-R   73 (273)
T ss_dssp             HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--------SSCEEEEEECGGGSCH-HHHHHHHHHHHTT-TC-C
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--------CCCeEEEEECccCCch-HHHHHHHHHHHhc-CC-c
Confidence            4555666788999999999999888877754444331        4689999999999875 4566677777654 33 5


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHhhh
Q 020714          292 IFMTSGLKGAGLKALTQYLMEQFKD  316 (322)
Q Consensus       292 ~~~iSa~~g~gi~el~~~i~~~l~~  316 (322)
                      ++++|++++.|+.++.+.+.+.+.+
T Consensus        74 ~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          74 SLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             cceeecccCCCccccchhhhhhhhh
Confidence            8999999999999998888776654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1.2e-06  Score=72.72  Aligned_cols=71  Identities=13%  Similarity=0.240  Sum_probs=41.5

Q ss_pred             ccEEEEEEeCCCCCCCcHHHHH---HHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          223 FEVLMVVFDVHRHLTSPDSRVI---RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       223 ad~ii~v~D~s~~~~~~~~~~~---~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      .+.++.|+|+...    +....   .+...+...      .++|+||+|+....+   ...+.+...++..+++++| ..
T Consensus       122 l~~vi~vVDa~~~----~~~~~~~~~~~~Qi~~A------D~ivlNK~Dl~~~~~---~~~~~l~~lNP~a~Ii~~~-~g  187 (222)
T d1nija1         122 LDGVIALVDAVHA----DEQMNQFTIAQSQVGYA------DRILLTKTDVAGEAE---KLHERLARINARAPVYTVT-HG  187 (222)
T ss_dssp             EEEEEEEEETTTH----HHHHHHCHHHHHHHHTC------SEEEEECTTTCSCTH---HHHHHHHHHCSSSCEEECC-SS
T ss_pred             ccchhhhhhhhhh----hhhhhhhHHHHHHHHhC------CcccccccccccHHH---HHHHHHHHHhCCCeEEEee-CC
Confidence            4788999998532    22111   122333322      589999999986533   3444555566766777655 23


Q ss_pred             CCCHHHHH
Q 020714          300 GAGLKALT  307 (322)
Q Consensus       300 g~gi~el~  307 (322)
                      ...++.|+
T Consensus       188 ~v~~~~ll  195 (222)
T d1nija1         188 DIDLGLLF  195 (222)
T ss_dssp             CCCGGGGS
T ss_pred             ccCHHHhh
Confidence            34555554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.17  E-value=7.4e-06  Score=66.91  Aligned_cols=100  Identities=13%  Similarity=0.148  Sum_probs=50.6

Q ss_pred             CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714          186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN  265 (322)
Q Consensus       186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N  265 (322)
                      +.++.|+||+|.....     ......+.... .....+-+++|+|+..+    ...+ .....+...-.   ..=+++|
T Consensus        92 ~~d~vlIDTaGr~~~d-----~~~~~el~~~~-~~~~~~~~llv~~a~~~----~~~~-~~~~~f~~~~~---~~~~I~T  157 (207)
T d1ls1a2          92 ARDLILVDTAGRLQID-----EPLMGELARLK-EVLGPDEVLLVLDAMTG----QEAL-SVARAFDEKVG---VTGLVLT  157 (207)
T ss_dssp             TCCEEEEECCCCSSCC-----HHHHHHHHHHH-HHHCCSEEEEEEEGGGT----HHHH-HHHHHHHHHTC---CCEEEEE
T ss_pred             cCcceeecccccchhh-----hhhHHHHHHHH-hhcCCceEEEEeccccc----hhHH-HHHHHHHhhCC---CCeeEEe
Confidence            4578999999986432     22223333332 33456788999998543    2222 22222221100   1468999


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714          266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL  306 (322)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el  306 (322)
                      |.|....-..........    +. |+.+++  .|+.+++|
T Consensus       158 KlDe~~~~G~~l~~~~~~----~~-Pi~~i~--~Gq~pedl  191 (207)
T d1ls1a2         158 KLDGDARGGAALSARHVT----GK-PIYFAG--VSEKPEGL  191 (207)
T ss_dssp             CGGGCSSCHHHHHHHHHH----CC-CEEEEC--------CC
T ss_pred             ecCccccchHHHHHHHHH----CC-CEEEEe--CCCChhhc
Confidence            999866544443333332    23 576776  56666554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.02  E-value=1e-05  Score=66.63  Aligned_cols=87  Identities=26%  Similarity=0.350  Sum_probs=56.7

Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK  299 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~  299 (322)
                      +.+.|.+++|+.+..+. .....+.+++-.....   +.+.++|+||+||.... ................+++.+|+++
T Consensus         8 vANiD~vliV~s~~~P~-~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~-~~~~~~~~~~~~~~~~~v~~vSa~~   82 (225)
T d1u0la2           8 VANVDQVILVVTVKMPE-TSTYIIDKFLVLAEKN---ELETVMVINKMDLYDED-DLRKVRELEEIYSGLYPIVKTSAKT   82 (225)
T ss_dssp             EESCCEEEEEECSSTTC-CCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHH-HHHHHHHHHHHHTTTSCEEECCTTT
T ss_pred             cccCCEEEEEEeCCCCC-CCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHH-HHHHHHHhhcccccceeEEEecccc
Confidence            46679999999875543 2223344455544444   45699999999998743 2323222222212224699999999


Q ss_pred             CCCHHHHHHHHH
Q 020714          300 GAGLKALTQYLM  311 (322)
Q Consensus       300 g~gi~el~~~i~  311 (322)
                      |.|+++|.+++.
T Consensus        83 ~~g~~~L~~~l~   94 (225)
T d1u0la2          83 GMGIEELKEYLK   94 (225)
T ss_dssp             CTTHHHHHHHHS
T ss_pred             chhHhhHHHHhc
Confidence            999999988774

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.69  E-value=0.00054  Score=53.42  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .||+++|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4799999999999999999876

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00034  Score=59.36  Aligned_cols=63  Identities=24%  Similarity=0.302  Sum_probs=41.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeee-eecC-CCCceeeeEEEEEee---CCccEEEEeCCCcccC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSR-KTNTTTHEVLGVMTK---ADTQICIFDTPGLMLN  200 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~-~~~~-~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~  200 (322)
                      ....|.++|+.++|||+|+|.|.+.... .++. .-.+|...+......   .+..+.++||.|+...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~   98 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV   98 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence            3557889999999999999999986532 1222 223444443322221   2456899999999754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.48  E-value=3.7e-05  Score=63.43  Aligned_cols=85  Identities=16%  Similarity=0.350  Sum_probs=56.2

Q ss_pred             cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH---HHHHHHHhcCCCCCcEEEee
Q 020714          220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGYERIFMTS  296 (322)
Q Consensus       220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~iS  296 (322)
                      +.+.|.+++|+.+.++. .....+..++-.....   +.+.++|+||+||....+..   ......+.. .+. +++.+|
T Consensus         8 vANiD~~~iV~s~~~P~-~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~-~g~-~v~~~S   81 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPS-FSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-IGY-DVYLTS   81 (231)
T ss_dssp             EECCCEEEEEEESTTTT-CCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-HTC-CEEECC
T ss_pred             ccccCEEEEEEECCCCC-CCHHHHHHHHHHHHHc---CCCEEEEEecccccccHHHHHHHHHHHHHHhh-ccc-cceeee
Confidence            46779999999885543 3333455555555544   56689999999998763321   112222222 244 699999


Q ss_pred             cCCCCCHHHHHHHH
Q 020714          297 GLKGAGLKALTQYL  310 (322)
Q Consensus       297 a~~g~gi~el~~~i  310 (322)
                      ++++.|+++|.+++
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999999988765

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.40  E-value=3.8e-06  Score=68.36  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +.-|+++|.||+||||+.++|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56789999999999999999874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.18  E-value=0.0052  Score=50.80  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....|++.|+||+|||++++++.+
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            345699999999999999999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.08  E-value=0.00014  Score=56.58  Aligned_cols=26  Identities=27%  Similarity=0.565  Sum_probs=23.3

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+++.+|+++|+|||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            46788999999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.98  E-value=0.00016  Score=56.70  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .-+|+|+|+||+|||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999975

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0002  Score=55.40  Aligned_cols=22  Identities=9%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +.++|+|++|+|||||++.|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3589999999999999999974

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00053  Score=57.73  Aligned_cols=82  Identities=16%  Similarity=0.166  Sum_probs=47.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW  217 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  217 (322)
                      ..-++++||+||||||+++..|...-..  +..|..          ..+..++-+|+..+.-....  .......+...+
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~~--~~vp~~----------l~~~~i~~l~~~~liag~~~--~g~~e~r~~~i~  103 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIVQ--GDVPEV----------MADCTIYSLDIGSLLAGTKY--RGDFEKRFKALL  103 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHH--TCSCGG----------GTTCEEEECCCC---CCCCC--SSCHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHHh--CCcccc----------cccceeEEeeechHhccCcc--chhHHHHHHHHH
Confidence            3457899999999999999988754321  111111          22344455555544422211  133445566667


Q ss_pred             hhcccccEEEEEEeCC
Q 020714          218 SAVNLFEVLMVVFDVH  233 (322)
Q Consensus       218 ~~~~~ad~ii~v~D~s  233 (322)
                      ..+...+-+|+++|--
T Consensus       104 ~~~~~~~~iIlfiDei  119 (268)
T d1r6bx2         104 KQLEQDTNSILFIDEI  119 (268)
T ss_dssp             HHHSSSSCEEEEETTT
T ss_pred             HHhhccCCceEEecch
Confidence            7777778788888853

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.78  E-value=0.00027  Score=54.70  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+|+++|+||+||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.74  E-value=0.00043  Score=53.75  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=22.4

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+++.|.++|.||+||||+.+.|..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999988864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.71  E-value=0.00043  Score=54.91  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=22.1

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +++++|+++|+||+||||+...|..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999998864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00079  Score=53.72  Aligned_cols=80  Identities=13%  Similarity=0.216  Sum_probs=45.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .-+++++|+||||||+++..|..+-..  +..|..          ..+..++-+|+..+.-...  ........+...+.
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri~~--~~vp~~----------L~~~~i~~ld~~~LiAg~~--~rG~~E~rl~~il~  108 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRIIN--GEVPEG----------LKGRRVLALDMGALVAGAK--YRGEFEERLKGVLN  108 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHHH--TCSCGG----------GTTCEEEEECHHHHHTTTC--SHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHHHh--CCCCHH----------HcCceEEEeeHHHHhccCC--ccHHHHHHHHHHHH
Confidence            446899999999999999888654221  111111          2345667777765542111  11334555666666


Q ss_pred             hccc-ccEEEEEEeC
Q 020714          219 AVNL-FEVLMVVFDV  232 (322)
Q Consensus       219 ~~~~-ad~ii~v~D~  232 (322)
                      ++.. ..-+|+++|-
T Consensus       109 e~~~~~~~iILfIDe  123 (195)
T d1jbka_         109 DLAKQEGNVILFIDE  123 (195)
T ss_dssp             HHHHSTTTEEEEEET
T ss_pred             HHhcCCCcEEEEcch
Confidence            6533 3235555554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.59  E-value=0.00058  Score=54.29  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=21.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .++..|+|+|+||+||||+...|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4567889999999999999998864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.54  E-value=0.00057  Score=51.81  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhHHHHHHhC
Q 020714          142 VGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~  161 (322)
                      |++.|+||+||||+++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999998854

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.52  E-value=0.0014  Score=51.67  Aligned_cols=27  Identities=22%  Similarity=0.434  Sum_probs=22.9

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....++.|+|.|++|+|||||.+.|..
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            344678899999999999999999863

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.52  E-value=0.00059  Score=52.84  Aligned_cols=20  Identities=20%  Similarity=0.476  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhHHHHHHhC
Q 020714          142 VGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~  161 (322)
                      ++|+|.+|+|||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999998863

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.50  E-value=0.00046  Score=54.46  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .-|+++|++|||||||++.|...
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            34789999999999999998754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.45  E-value=0.00059  Score=54.07  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+++|+|+|+||+||||+...|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00054  Score=54.10  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchhHHHHHHhCC
Q 020714          142 VGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~  162 (322)
                      |+|+|++|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999999854

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.39  E-value=0.00079  Score=51.78  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      -|+++|+||+||||+.+.|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.03  Score=46.31  Aligned_cols=24  Identities=25%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..+++.|+||+|||++++++..
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHH
Confidence            345689999999999999999864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.25  E-value=0.0011  Score=51.74  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+|+|+|+||+||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998854

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.19  E-value=0.0023  Score=53.09  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+.-|++.|+||+|||||+.+|.+
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3455688999999999999998864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.0014  Score=51.24  Aligned_cols=25  Identities=32%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +.+.-|+++|.||+||||++..+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4577899999999999999998864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.00097  Score=53.83  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .-++|+||+|||||||++.|+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            45789999999999999999754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.18  E-value=0.0014  Score=52.11  Aligned_cols=25  Identities=24%  Similarity=0.538  Sum_probs=22.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+.++|+++|+||+||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0013  Score=54.45  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=23.7

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ...+-+++|+|++|+|||||++.|.+-.
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3456679999999999999999998743

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.15  E-value=0.0018  Score=53.58  Aligned_cols=28  Identities=21%  Similarity=0.334  Sum_probs=23.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ...+-.++++|++|+|||||++.|.+-.
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3456689999999999999999998743

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.14  E-value=0.0083  Score=49.54  Aligned_cols=23  Identities=26%  Similarity=0.560  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +-.+++.|+||+|||++++++.+
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            34589999999999999999974

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.13  E-value=0.0011  Score=51.31  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~  160 (322)
                      ++|+++|+|||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            458899999999999988875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.13  E-value=0.0013  Score=51.23  Aligned_cols=20  Identities=20%  Similarity=0.421  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~  160 (322)
                      .|+|.|+||+||||+++.|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37899999999999999885

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.13  E-value=0.0015  Score=53.55  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=22.8

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+=.++++|++|+|||||++.+.+-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCC
Confidence            345578999999999999999998754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0015  Score=51.70  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ++.|+|+|+||+||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.11  E-value=0.0015  Score=51.27  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+|+|+|+||+||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0013  Score=49.99  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|.++|+||+||||+...|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998854

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.08  E-value=0.0015  Score=52.43  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+-.++++|+.|+|||||++.+.+.-
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            34458999999999999999998854

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0017  Score=53.28  Aligned_cols=27  Identities=22%  Similarity=0.486  Sum_probs=22.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+=.++++|++|+|||||++.+.+-.
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            345568999999999999999998753

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0015  Score=50.71  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhHHHHHHhC
Q 020714          142 VGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~  161 (322)
                      |.++|+||+|||||+..+..
T Consensus         4 v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            88999999999999988763

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.00093  Score=52.70  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ++..|.++|+||+||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            577889999999999999998854

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.04  E-value=0.0017  Score=50.90  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+|+|+|+||+||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.03  E-value=0.0017  Score=54.16  Aligned_cols=27  Identities=22%  Similarity=0.366  Sum_probs=23.1

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ...+-.++++|++|+|||||++.|.+-
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcc
Confidence            345567999999999999999999874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0019  Score=53.77  Aligned_cols=28  Identities=14%  Similarity=0.278  Sum_probs=23.7

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ...+-.++++|++|+|||||++.+.+-.
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            3456689999999999999999998743

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.97  E-value=0.0025  Score=56.38  Aligned_cols=81  Identities=15%  Similarity=0.194  Sum_probs=39.7

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS  218 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  218 (322)
                      .-++++||+||||||+++..|..+-..  +..|..          ..+..++-+|...+.-.....  ......+...+.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~i~~--~~vp~~----------l~~~~i~~ld~~~l~ag~~~~--g~~e~r~~~i~~  108 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQRIVK--GDVPEG----------LKGKRIVSLQMGSLLAGAKYR--GEFEERLKAVIQ  108 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHHH--TCSCTT----------STTCEEEEECC-------------CHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHHHHh--CCCCHH----------HcCceEEEeeHhhhhcccCcc--hhHHHHHHHHHH
Confidence            344789999999999999877643211  111111          223445556655443211111  223344555555


Q ss_pred             hccccc-EEEEEEeCC
Q 020714          219 AVNLFE-VLMVVFDVH  233 (322)
Q Consensus       219 ~~~~ad-~ii~v~D~s  233 (322)
                      .+.... -+|+++|--
T Consensus       109 ~~~~~~~~~ilfide~  124 (387)
T d1qvra2         109 EVVQSQGEVILFIDEL  124 (387)
T ss_dssp             HHHTTCSSEEEEECCC
T ss_pred             HhccCCCceEEEeccH
Confidence            554443 466676653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.93  E-value=0.0021  Score=52.87  Aligned_cols=27  Identities=15%  Similarity=0.430  Sum_probs=22.7

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+=.++++|++|+|||||++.+.|-.
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            344568999999999999999998753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0019  Score=50.40  Aligned_cols=22  Identities=27%  Similarity=0.608  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+|+|+|+||+||||....|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999988864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.90  E-value=0.0021  Score=54.39  Aligned_cols=27  Identities=26%  Similarity=0.514  Sum_probs=23.4

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ...+-.++|+|++|+|||||++.+.|.
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            455668999999999999999999874

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.0022  Score=50.19  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .++|+|+|+||+||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.84  E-value=0.0026  Score=49.00  Aligned_cols=24  Identities=25%  Similarity=0.392  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +--|+++|+||+||||+.+.|...
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            345789999999999999998653

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0024  Score=51.35  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHh
Q 020714          139 SVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~  160 (322)
                      |+.|+|.|.+|+|||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            6889999999999999999874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.83  E-value=0.0025  Score=52.51  Aligned_cols=27  Identities=15%  Similarity=0.370  Sum_probs=22.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCee
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTKV  164 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~~  164 (322)
                      .+=.++++|++|+|||||++.+.+-..
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            445689999999999999999988643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.83  E-value=0.0021  Score=52.86  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchhHHHHHHhCCe
Q 020714          141 AVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .++++|++|+|||||++.+.|-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46799999999999999998753

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.82  E-value=0.0016  Score=53.25  Aligned_cols=26  Identities=23%  Similarity=0.402  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+=.++++|++|+|||||++.+.|-.
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            34458999999999999999998864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.038  Score=45.61  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..+++.|+||+|||++++++..
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHH
Confidence            344589999999999999998865

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0023  Score=50.49  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchhHHHHHHhCC
Q 020714          142 VGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~  162 (322)
                      |+|+|++||||+||++.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0018  Score=53.26  Aligned_cols=26  Identities=27%  Similarity=0.530  Sum_probs=22.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..+=.++++|++|+|||||++.+.|.
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            34556899999999999999999884

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.72  E-value=0.0028  Score=52.26  Aligned_cols=27  Identities=30%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            345568999999999999999998854

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.72  E-value=0.0031  Score=51.95  Aligned_cols=28  Identities=21%  Similarity=0.392  Sum_probs=23.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCee
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV  164 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~  164 (322)
                      ..+-.++++|+.|+|||||++.+.|...
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3455689999999999999999998643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.68  E-value=0.0024  Score=49.15  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      +|+++|+||+||||+...|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999888753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.66  E-value=0.0048  Score=50.39  Aligned_cols=23  Identities=17%  Similarity=0.381  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+++.|+||+||||+++.+.+
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45588999999999999998865

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0036  Score=48.01  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +.-++++|+||+||||+.+.|..
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.64  E-value=0.0028  Score=48.69  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      -|++.|+||+||||+.+.|..
T Consensus         5 iI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477889999999999999865

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.58  E-value=0.0028  Score=50.23  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ++..|.|+|+||+||||+...|..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            455688999999999999999864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.0038  Score=49.36  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ....|+|+|+||+||||+...|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            355688999999999999999865

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.0037  Score=51.46  Aligned_cols=27  Identities=33%  Similarity=0.462  Sum_probs=22.9

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+-.++++|++|+|||||++.+.|-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            345568999999999999999998854

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.57  E-value=0.0024  Score=53.23  Aligned_cols=27  Identities=30%  Similarity=0.458  Sum_probs=23.0

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ...+-+++|+|++|+|||||++.|.+-
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHhc
Confidence            345668999999999999999998874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.55  E-value=0.0033  Score=49.68  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=22.9

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+++.|+|-|..||||||+++.|..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            45678899999999999999999865

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.54  E-value=0.0036  Score=49.30  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .++.|+|+|.+|+||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999999998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.50  E-value=0.0035  Score=52.18  Aligned_cols=26  Identities=38%  Similarity=0.510  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      .+=.++++|+.|+|||||++.+.|..
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            34458999999999999999998853

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.44  E-value=0.0034  Score=48.92  Aligned_cols=19  Identities=26%  Similarity=0.448  Sum_probs=16.8

Q ss_pred             EEEEcCCCCchhHHHHHHh
Q 020714          142 VGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~  160 (322)
                      |+|.|.|||||||+++.|.
T Consensus         4 ivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4578999999999999885

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.44  E-value=0.0023  Score=52.74  Aligned_cols=28  Identities=29%  Similarity=0.616  Sum_probs=23.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCee
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTKV  164 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~~  164 (322)
                      ..+=.++++|++|+|||||++.+.+-..
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCcC
Confidence            3455789999999999999999988543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.37  E-value=0.0083  Score=48.81  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..++|.|+||+||||+++.+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            4588999999999999998864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.013  Score=49.92  Aligned_cols=27  Identities=19%  Similarity=0.297  Sum_probs=22.9

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHh
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      ...+.++.|+|.|.+|||||||.+.|.
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            445678999999999999999988774

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.34  E-value=0.0047  Score=51.44  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=23.0

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      ..+=.++++|++|+|||||++.+.|-.
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            445578999999999999999998754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.31  E-value=0.0043  Score=47.95  Aligned_cols=19  Identities=16%  Similarity=0.349  Sum_probs=17.0

Q ss_pred             EEEEcCCCCchhHHHHHHh
Q 020714          142 VGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~  160 (322)
                      |.++|+||+||||+.+.|.
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6788999999999998875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.0042  Score=49.10  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchhHHHHHHhC
Q 020714          142 VGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~  161 (322)
                      |+|+|++||||+||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77999999999999999864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.10  E-value=0.0091  Score=47.91  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=22.7

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..++..|.+.|.||+|||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45678899999999999999998864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.94  E-value=0.0071  Score=48.56  Aligned_cols=24  Identities=25%  Similarity=0.529  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +.++|+|.|+||+||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346788999999999999998864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.94  E-value=0.0081  Score=49.72  Aligned_cols=20  Identities=30%  Similarity=0.566  Sum_probs=17.0

Q ss_pred             EEEEcCCCCchhHHHHHHhC
Q 020714          142 VGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~  161 (322)
                      +.+.|+||+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            44569999999999998865

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.81  E-value=0.0067  Score=52.24  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+|+|+|.+|+|||||+|+|++
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCCEEEEeeccccchHHHHHHhh
Confidence            34589999999999999999975

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.79  E-value=0.021  Score=46.77  Aligned_cols=24  Identities=17%  Similarity=0.357  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..++|.|+||+|||++++.+..
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHH
Confidence            445689999999999999998764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.69  E-value=0.024  Score=47.67  Aligned_cols=27  Identities=15%  Similarity=0.112  Sum_probs=22.4

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHh
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      .....++-|+|.|.+|+|||||...|.
T Consensus        22 ~~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          22 TGNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            345568999999999999999987653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.014  Score=46.58  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +.|+|.|+||+||||+...|..
T Consensus         4 piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688889999999999988864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.10  E-value=0.015  Score=46.99  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+++.|+||+||||++..+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999998865

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.01  E-value=0.011  Score=50.39  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      -.++++||||||||.|.+++.+
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            4578999999999999999864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.97  E-value=0.12  Score=42.31  Aligned_cols=84  Identities=10%  Similarity=0.033  Sum_probs=41.4

Q ss_pred             ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEe
Q 020714          187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMN  265 (322)
Q Consensus       187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~N  265 (322)
                      .++.++|||+-......           ........||.++++.+.....-.....+...++.+....  +.+ .-+|.|
T Consensus       116 ~D~viiD~p~~~~~~~~-----------~~~~~~~~ad~vliv~~~~~~sl~~~~~~~~~i~~~~~~~--~~~~~~vv~N  182 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGF-----------AMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSG--GVRLGGIICN  182 (269)
T ss_dssp             CSEEEEEEECSSCSTTT-----------THHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTB--BCEEEEEEEE
T ss_pred             CCEEEeccCCccchhHH-----------HHHHHhhccCceeeccchhhhHHHHHHHHHHHHHhhcccc--ceeccceEEe
Confidence            56889999865432110           0111234568888887663110001113444455544321  223 347889


Q ss_pred             CCCCCCChhHHHHHHHHH
Q 020714          266 KVDLVTKKKDLLKVAEQF  283 (322)
Q Consensus       266 K~Dl~~~~~~~~~~~~~~  283 (322)
                      +.+.....+..++..+.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~  200 (269)
T d1cp2a_         183 SRKVANEYELLDAFAKEL  200 (269)
T ss_dssp             CCSSSCCHHHHHHHHHHH
T ss_pred             eecCCCccchhhhhHhhc
Confidence            998776544444444433

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.94  E-value=0.017  Score=47.17  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+++.|+||+||||++..+..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.019  Score=45.81  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchhHHHHHHhCC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +.|+|+|.+|+||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            56899999999999999988643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.65  E-value=0.016  Score=47.63  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .++|.|++|+|||||++.+..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999998763

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.48  E-value=0.062  Score=46.71  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+-+++++|++|||||-|..+|..
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHh
Confidence            33456799999999999999998753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.47  E-value=0.021  Score=45.07  Aligned_cols=21  Identities=29%  Similarity=0.583  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|+|-|..|+||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998763

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.37  E-value=0.027  Score=44.66  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +.|+++|..|+||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=0.023  Score=45.43  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ++.-|+|-|..|+||||+++.|..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHH
Confidence            345688889999999998887753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.07  E-value=0.024  Score=45.68  Aligned_cols=21  Identities=29%  Similarity=0.407  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+++.|+||+||||++..+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            478999999999999988864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.93  E-value=0.026  Score=45.31  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+++.|+||+||||++..+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            488999999999999987754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.03  Score=44.47  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .-|+|-|..|+||||+++.|..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3478889999999999998763

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.63  E-value=0.026  Score=45.87  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...+++.|+||+||||++..+..
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            33588999999999999988764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.55  E-value=0.021  Score=48.00  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=16.7

Q ss_pred             CceEEEEEcCCCCchhHHHHHHh
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      +.+.|+|.|.+|+||||+.++|.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHH
Confidence            34579999999999999998764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.49  E-value=0.032  Score=44.76  Aligned_cols=21  Identities=29%  Similarity=0.426  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+++.|+||+||||++..+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            478999999999999998865

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.03  Score=45.12  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchhHHHHHHhC
Q 020714          140 VAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~~  161 (322)
                      -.|+|-|..||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999998865

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=92.14  E-value=0.037  Score=48.12  Aligned_cols=26  Identities=15%  Similarity=0.139  Sum_probs=21.3

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+..-.+++.|+||+|||+|.+.+.+
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            34455789999999999999988753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.07  E-value=0.062  Score=44.44  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=21.2

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..|++.|+||+|||+|++++.+
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHH
Confidence            3445689999999999999999865

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.78  E-value=0.032  Score=49.97  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +-+|+++||||||||-|.++|.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999864

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.054  Score=43.70  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +--|+|-|..||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            44688999999999999998864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.1  Score=44.23  Aligned_cols=21  Identities=14%  Similarity=0.245  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .++++|+||||||.|...|..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            688999999999999988753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=91.33  E-value=0.05  Score=42.11  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      +.-|+|.|++|+||||+.-.|...
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            445899999999999999887654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.016  Score=45.00  Aligned_cols=19  Identities=32%  Similarity=0.471  Sum_probs=16.4

Q ss_pred             EEEEcCCCCchhHHHHHHh
Q 020714          142 VGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~  160 (322)
                      .+|+|+.|+||||++.+|.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.059  Score=42.04  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=21.6

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+.+-.+.|.|+||+|||+|+..+..
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            445566788999999999999877653

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.21  E-value=0.072  Score=38.33  Aligned_cols=26  Identities=0%  Similarity=0.083  Sum_probs=22.8

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+.++.|.+.|.+|+||||+.++|..
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHH
Confidence            35689999999999999999999853

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.19  E-value=0.058  Score=41.79  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhCCe
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVGTK  163 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~~~  163 (322)
                      +.-|+|.|++|+||||+...|....
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            4558999999999999998887643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.13  E-value=0.035  Score=47.53  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .++++|+||+|||+|++++.+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            489999999999999998753

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.09  E-value=0.12  Score=42.76  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ...|+|.|++|+|||||+..+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999988764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=90.78  E-value=0.071  Score=40.96  Aligned_cols=25  Identities=28%  Similarity=0.276  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      .+.-|++.|++|+||||+.-.|..+
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3456899999999999998877654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.66  E-value=0.048  Score=45.67  Aligned_cols=17  Identities=41%  Similarity=0.755  Sum_probs=15.6

Q ss_pred             EEEcCCCCchhHHHHHH
Q 020714          143 GIIGAPNAGKSSIINYM  159 (322)
Q Consensus       143 ~v~G~~~vGKStlin~l  159 (322)
                      +++|+.|+||||++.++
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            58899999999999887

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.59  E-value=0.075  Score=42.37  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ++.-|+|-|..|+||||+++.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            455689999999999999998753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.97  E-value=0.081  Score=42.25  Aligned_cols=27  Identities=15%  Similarity=0.202  Sum_probs=22.2

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+.+-.+.|.|+||+|||+|+..+.-
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            455666788999999999999987753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=89.47  E-value=0.087  Score=46.33  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      .--|+|.|++|+||||++..++.
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hceEEEEcCCCCCccHHHHHHhh
Confidence            34578999999999999998865

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.40  E-value=0.081  Score=41.73  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=20.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ++.-.+.+.|+||+|||.|+++|..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            4445688999999999999987753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.36  E-value=0.097  Score=41.72  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchhHHHHHHhCC
Q 020714          142 VGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~~  162 (322)
                      +.+.|++|+|||.|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            679999999999999988653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=89.17  E-value=0.11  Score=44.39  Aligned_cols=25  Identities=24%  Similarity=0.207  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhCC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVGT  162 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~~  162 (322)
                      ..++|.|-|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4678999999999999999998753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=88.94  E-value=0.1  Score=44.48  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=21.6

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +..++|.|-|.-|+||||+++.|..
T Consensus         2 p~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           2 PTLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CCceEEEEECCcCCCHHHHHHHHHH
Confidence            3457899999999999999999864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=88.93  E-value=0.095  Score=44.82  Aligned_cols=24  Identities=17%  Similarity=0.198  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchhHHHHHHhC
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +.++|.|-|.-|+||||+++.|..
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=88.82  E-value=0.1  Score=44.36  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchhHHHHHHhC
Q 020714          142 VGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       142 v~v~G~~~vGKStlin~l~~  161 (322)
                      +++.|+||+|||.|.+.|.+
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            44579999999999999865

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.66  E-value=0.099  Score=45.54  Aligned_cols=21  Identities=29%  Similarity=0.604  Sum_probs=17.4

Q ss_pred             CceEEEEEcCCCCchhHHHHHH
Q 020714          138 KSVAVGIIGAPNAGKSSIINYM  159 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l  159 (322)
                      .+++ +|+|+.|+|||+++.++
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHH
Confidence            3454 58899999999999987

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=88.66  E-value=0.13  Score=41.39  Aligned_cols=21  Identities=14%  Similarity=0.436  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .|++.|..|+||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999854

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=88.46  E-value=0.13  Score=41.30  Aligned_cols=27  Identities=22%  Similarity=0.246  Sum_probs=21.8

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHh
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      ...+.+-.+.|.|+||+|||+|+..+.
T Consensus        21 GGi~~gsl~li~G~pGsGKT~l~~qia   47 (242)
T d1tf7a2          21 GGFFKDSIILATGATGTGKTLLVSRFV   47 (242)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            345567778899999999999987664

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.42  E-value=0.13  Score=41.23  Aligned_cols=27  Identities=11%  Similarity=0.239  Sum_probs=21.9

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHh
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      ...+.+-.+.|.|+||+|||+|.-.+.
T Consensus        31 GGlp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          31 GGIETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            345666778899999999999987664

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=88.19  E-value=0.19  Score=37.99  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=21.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..+..|.+.|.-|+|||||+..+..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHh
Confidence            4567789999999999999998864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.16  E-value=0.24  Score=41.90  Aligned_cols=21  Identities=14%  Similarity=0.381  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+.++|++|||||.+...|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578889999999999887653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=87.81  E-value=0.14  Score=42.10  Aligned_cols=23  Identities=13%  Similarity=0.232  Sum_probs=17.9

Q ss_pred             CceEEEEEcCCCCchhHHHHHHh
Q 020714          138 KSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       138 ~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      .+--++|.|.||+|||+|+..+.
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            34456799999999999976654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=87.49  E-value=0.16  Score=40.33  Aligned_cols=25  Identities=16%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHh
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      .+.+-.+.|.|+||+|||+|+..+.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            5556678899999999999987664

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.22  E-value=0.29  Score=38.51  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=18.8

Q ss_pred             ceEEEEEcCCCCchhHHHHHHhC
Q 020714          139 SVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       139 ~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      +-.+++.|++|+||||++..+..
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            33488999999999999987653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.07  E-value=0.17  Score=40.84  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhHHHHHHhC
Q 020714          141 AVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~~  161 (322)
                      .+++.|+||+||||++..+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            478899999999999987653

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=86.53  E-value=0.19  Score=39.69  Aligned_cols=25  Identities=12%  Similarity=0.048  Sum_probs=20.2

Q ss_pred             hccCceEEEEEcCCCCchhHHHHHH
Q 020714          135 EDQKSVAVGIIGAPNAGKSSIINYM  159 (322)
Q Consensus       135 ~~~~~~~v~v~G~~~vGKStlin~l  159 (322)
                      ..+.+-.+.|.|+||+|||+|+-.+
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHH
Confidence            4566777889999999999997544

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=85.95  E-value=0.19  Score=41.06  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=17.2

Q ss_pred             eEEEEEcCCCCchhHHHHHHh
Q 020714          140 VAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       140 ~~v~v~G~~~vGKStlin~l~  160 (322)
                      -.++|.|+||+|||+|+-.+.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            356799999999999986654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.90  E-value=0.26  Score=39.39  Aligned_cols=27  Identities=11%  Similarity=0.150  Sum_probs=22.4

Q ss_pred             hhccCceEEEEEcCCCCchhHHHHHHh
Q 020714          134 EEDQKSVAVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       134 ~~~~~~~~v~v~G~~~vGKStlin~l~  160 (322)
                      ...+.+-.+.|.|+||+|||+|.-.+.
T Consensus        32 GGip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          32 GGIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            346667788999999999999987765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=84.24  E-value=0.24  Score=43.42  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCchhHHHHHHh
Q 020714          141 AVGIIGAPNAGKSSIINYMV  160 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~l~  160 (322)
                      -++|+|.+|+|||+++..++
T Consensus        52 H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHH
Confidence            38999999999999987665

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=84.04  E-value=0.34  Score=39.88  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=20.4

Q ss_pred             cCceEEEEEcCCCCchhHHHHHHhC
Q 020714          137 QKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       137 ~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ++.-.+.+.|+++.|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            4455678999999999999988753

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=83.39  E-value=0.21  Score=41.27  Aligned_cols=15  Identities=20%  Similarity=0.501  Sum_probs=12.8

Q ss_pred             EEEEcCCCCchhHHH
Q 020714          142 VGIIGAPNAGKSSII  156 (322)
Q Consensus       142 v~v~G~~~vGKStli  156 (322)
                      +.|+|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678899999999764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=81.51  E-value=0.3  Score=40.72  Aligned_cols=15  Identities=20%  Similarity=0.527  Sum_probs=12.9

Q ss_pred             EEEEcCCCCchhHHH
Q 020714          142 VGIIGAPNAGKSSII  156 (322)
Q Consensus       142 v~v~G~~~vGKStli  156 (322)
                      +.|.|.||+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            678899999999764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=81.05  E-value=0.41  Score=41.17  Aligned_cols=18  Identities=28%  Similarity=0.477  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCchhHHHHH
Q 020714          141 AVGIIGAPNAGKSSIINY  158 (322)
Q Consensus       141 ~v~v~G~~~vGKStlin~  158 (322)
                      .++|.|+||+||||++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            467889999999998754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=80.83  E-value=0.46  Score=39.42  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714          136 DQKSVAVGIIGAPNAGKSSIINYMVG  161 (322)
Q Consensus       136 ~~~~~~v~v~G~~~vGKStlin~l~~  161 (322)
                      ..++-+++|+|.+|+|||+|+..+..
T Consensus        40 igrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          40 IGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            34567899999999999999877754