Citrus Sinensis ID: 020745

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
MDKNEEKQREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWRTRKCGIT
cccccccccccccccEEccccccccccccHHHHHHHHccccccHHHHHHHHHHcccccccEEEEccEEccccHHHHHHHHHcccccEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHcccHHHHHHHcccccccccccccccHHcccccccccccccccccccccEEEEcEEcccHHHHHHHHHccccccccccEEccccccccccccccccccccccEEEEcccHHHHHHHHHHcccccccccHHHHHHccccc
cccccccccccccccEEcccEEEccccccHHHHHHHHccccccHHHHHHHHHHHcccccHHHHcccEEcHHHHHHHHHHHHccccEEEEcccccccccccHHcHHHHHHHHHHHHHccccEEEEEcccHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEEEcHHHccccHHHHHHHHHHEEEccEEEEEEcccccccccEEEccHHHHcccccccccHHcccccccccEEEccccccccHHHHHHHHHHccccccHHHHHHHcHHcccccccccccccccEEEEcccHHHHHHHHHHHHcccccHHHHHHHHHcccc
MDKNEEKQREEEREqvvspwevsssgkidydkLIDKFGCQRLDQSLVDRVQrltgrpphvflrrgvffahRDLNDILDAYEKGekfylytgrgpssealhlghlvPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIAcgfdvtktfifsdfdyvggafYKNMVKVAKCVTYNKVVGifgftgedhigkvsfppvqavpsfpssfphlfsgkdhlrclipcaidqdpyfrmtrdvaprigyhkpaliessffpalqgetgkmsasdpnsaiyvTDSAKAIKNKIILLKCADKQVCIFWRTRKCGIT
mdkneekqreeereqvvspwevsssgkiDYDKLIDKFGCQRLDQSLVDrvqrltgrpphvflrrgvffahrDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGEtgkmsasdpnSAIYVTDSAKAIKNKIIllkcadkqvcifwrtrkcgit
MDKNeekqreeereqVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVpsfpssfphlfsGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSakaiknkiillkCADKQVCIFWRTRKCGIT
*************************GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPAL**************AIYVTDSAKAIKNKIILLKCADKQVCIFWRTRKCG**
****************VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYN************HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF*****************AIYVTDSAKAIKNKIILLKCADKQVCIFW*TRKC***
************************SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG*********PNSAIYVTDSAKAIKNKIILLKCADKQVCIFWRTRKCGIT
*************EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG*********PNSAIYVTDSAKAIKNKIILLKCADKQV************
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MDKNEEKQREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWRTRKCGIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query322 2.2.26 [Sep-21-2011]
P23381471 Tryptophan--tRNA ligase, yes no 0.900 0.615 0.649 1e-115
Q5R4J1472 Tryptophan--tRNA ligase, yes no 0.900 0.614 0.649 1e-115
P23612475 Tryptophan--tRNA ligase, yes no 0.928 0.629 0.633 1e-115
P17248476 Tryptophan--tRNA ligase, yes no 0.900 0.609 0.653 1e-114
Q6P7B0481 Tryptophan--tRNA ligase, yes no 0.922 0.617 0.641 1e-114
P32921481 Tryptophan--tRNA ligase, yes no 0.925 0.619 0.632 1e-113
Q55DZ8400 Tryptophan--tRNA ligase, yes no 0.885 0.712 0.585 1e-104
Q09692395 Tryptophan--tRNA ligase, yes no 0.891 0.726 0.591 1e-101
Q12109432 Tryptophan--tRNA ligase, yes no 0.894 0.666 0.543 2e-93
O96771385 Tryptophan--tRNA ligase O yes no 0.881 0.737 0.486 6e-81
>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2 Back     alignment and function desciption
 Score =  416 bits (1068), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 191/294 (64%), Positives = 239/294 (81%), Gaps = 4/294 (1%)

Query: 11  EEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
           E  E  V PW V  SS+  IDYDKLI +FG  ++D+ L++R++R TG+ PH FLRRG+FF
Sbjct: 79  EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFF 138

Query: 69  AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
           +HRD+N +LDAYE  + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDD
Sbjct: 139 SHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDD 198

Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCV 186
           EK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD DY+G    FYKN+VK+ K V
Sbjct: 199 EKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHV 258

Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 246
           T+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  +  ++CLIPCAIDQDPYFR
Sbjct: 259 TFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFR 318

Query: 247 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
           MTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK K+
Sbjct: 319 MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKV 372
Isoform 1, isoform 2 and T1-TrpRS have aminoacylation activity while T2-TrpRS lacks it. Isoform 2, T1-TrpRS and T2-TrpRS possess angiostatic activity whereas isoform 1 lacks it. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2
>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2 SV=2 Back     alignment and function description
>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus GN=WARS PE=2 SV=3 Back     alignment and function description
>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1 SV=3 Back     alignment and function description
>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars PE=1 SV=2 Back     alignment and function description
>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1 SV=2 Back     alignment and function description
>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q09692|SYWC_SCHPO Tryptophan--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wrs1 PE=1 SV=1 Back     alignment and function description
>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1 Back     alignment and function description
>sp|O96771|SYW_ENCCU Tryptophan--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU11_0530 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query322
449449024405 PREDICTED: tryptophan--tRNA ligase, cyto 0.931 0.740 0.895 1e-160
449523764389 PREDICTED: tryptophan--tRNA ligase, cyto 0.931 0.771 0.895 1e-159
225446410399 PREDICTED: tryptophanyl-tRNA synthetase, 0.888 0.716 0.930 1e-159
224102881404 predicted protein [Populus trichocarpa] 0.919 0.732 0.875 1e-158
147832996399 hypothetical protein VITISV_027725 [Viti 0.888 0.716 0.923 1e-158
297828964402 tRNA synthetase class I family protein [ 0.928 0.743 0.880 1e-157
255578670405 tryptophanyl-tRNA synthetase, putative [ 0.922 0.733 0.869 1e-156
15229319402 tryptophanyl-tRNA synthetase [Arabidopsi 0.928 0.743 0.860 1e-153
42572249402 tryptophanyl-tRNA synthetase [Arabidopsi 0.928 0.743 0.854 1e-151
358344211386 Tryptophanyl-tRNA synthetase [Medicago t 0.919 0.766 0.838 1e-149
>gi|449449024|ref|XP_004142265.1| PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/306 (89%), Positives = 288/306 (94%), Gaps = 6/306 (1%)

Query: 1   MDKNEEKQREEER----EQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLT 54
           M+K E +++ EE     +QVV+PW+VS+   GKIDYDKLIDKFGCQRL  SLVDRVQRLT
Sbjct: 1   MEKAEAERKVEESVVEDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLQPSLVDRVQRLT 60

Query: 55  GRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ 114
            RPPHVFLRRGVFFAHRD  +IL+AYE+GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ
Sbjct: 61  SRPPHVFLRRGVFFAHRDFEEILNAYERGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ 120

Query: 115 DAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA 174
           DAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDV+KTFIFSDFDY+GGA
Sbjct: 121 DAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVSKTFIFSDFDYIGGA 180

Query: 175 FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 234
           FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD LRCL
Sbjct: 181 FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDDLRCL 240

Query: 235 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 294
           IPCAIDQDPYFRMTRDVAPR+GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK
Sbjct: 241 IPCAIDQDPYFRMTRDVAPRLGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 300

Query: 295 AIKNKI 300
            IKNKI
Sbjct: 301 DIKNKI 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449523764|ref|XP_004168893.1| PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|225446410|ref|XP_002275626.1| PREDICTED: tryptophanyl-tRNA synthetase, cytoplasmic [Vitis vinifera] gi|302143316|emb|CBI21877.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102881|ref|XP_002312840.1| predicted protein [Populus trichocarpa] gi|118482985|gb|ABK93404.1| unknown [Populus trichocarpa] gi|222849248|gb|EEE86795.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147832996|emb|CAN66126.1| hypothetical protein VITISV_027725 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297828964|ref|XP_002882364.1| tRNA synthetase class I family protein [Arabidopsis lyrata subsp. lyrata] gi|297328204|gb|EFH58623.1| tRNA synthetase class I family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255578670|ref|XP_002530195.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] gi|223530288|gb|EEF32185.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15229319|ref|NP_187110.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|145331754|ref|NP_001078104.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|6175164|gb|AAF04890.1|AC011437_5 putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|19310593|gb|AAL85027.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|21436361|gb|AAM51350.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|110740619|dbj|BAE98413.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640582|gb|AEE74103.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640584|gb|AEE74105.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42572249|ref|NP_974219.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640583|gb|AEE74104.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|358344211|ref|XP_003636185.1| Tryptophanyl-tRNA synthetase [Medicago truncatula] gi|355502120|gb|AES83323.1| Tryptophanyl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query322
TAIR|locus:2084993402 AT3G04600 [Arabidopsis thalian 0.860 0.689 0.845 3.3e-127
UNIPROTKB|F1SAP4482 WARS "Uncharacterized protein" 0.857 0.572 0.646 5.8e-98
UNIPROTKB|E2RGG9476 WARS "Uncharacterized protein" 0.857 0.579 0.642 2.5e-97
UNIPROTKB|P23381471 WARS "Tryptophan--tRNA ligase, 0.857 0.585 0.635 3.2e-97
ZFIN|ZDB-GENE-040426-1742463 wars "tryptophanyl-tRNA synthe 0.857 0.596 0.642 4.1e-97
UNIPROTKB|P17248476 WARS "Tryptophan--tRNA ligase, 0.857 0.579 0.639 1.8e-96
RGD|1308278481 Wars "tryptophanyl-tRNA synthe 0.857 0.573 0.642 3.7e-96
UNIPROTKB|Q6P7B0481 Wars "Tryptophan--tRNA ligase, 0.857 0.573 0.642 3.7e-96
MGI|MGI:104630481 Wars "tryptophanyl-tRNA synthe 0.857 0.573 0.635 7.6e-96
UNIPROTKB|E1C2Z5473 WARS "Uncharacterized protein" 0.860 0.585 0.615 9.7e-96
TAIR|locus:2084993 AT3G04600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
 Identities = 236/279 (84%), Positives = 252/279 (90%)

Query:    16 VVSPWEVSSS--GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDL 73
             VV+PWEVS+   GKIDYDKLIDKFGCQRLD+SL+DRVQRLT R PHVFLRR VFFAHRD 
Sbjct:    17 VVNPWEVSAKDGGKIDYDKLIDKFGCQRLDESLIDRVQRLTSRQPHVFLRRSVFFAHRDF 76

Query:    74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW 133
             N+ILDAYE+G+KFYLYTGRGPSSEALHLGHL+PFMFTKYLQ+AFKVPLVIQLTDDEK +W
Sbjct:    77 NEILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQEAFKVPLVIQLTDDEKSIW 136

Query:   134 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVG 193
             KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV KCVT NK +G
Sbjct:   137 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVGKCVTLNKAMG 196

Query:   194 IFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAP 253
             IFGF+GED I K+SFPPVQAV            GKD+LRCLIPCAIDQDPYFRMTRDVAP
Sbjct:   197 IFGFSGEDPIAKLSFPPVQAVPSFPSSFPHLFPGKDNLRCLIPCAIDQDPYFRMTRDVAP 256

Query:   254 RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 292
             R+GY KPALIES+FFPALQGE GKMSASDPNSAIYVTDS
Sbjct:   257 RLGYSKPALIESTFFPALQGENGKMSASDPNSAIYVTDS 295
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=ISS;IDA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
UNIPROTKB|F1SAP4 WARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGG9 WARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P23381 WARS "Tryptophan--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1742 wars "tryptophanyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P17248 WARS "Tryptophan--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1308278 Wars "tryptophanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P7B0 Wars "Tryptophan--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:104630 Wars "tryptophanyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2Z5 WARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6P7B0SYWC_RAT6, ., 1, ., 1, ., 20.64110.92230.6174yesno
P23381SYWC_HUMAN6, ., 1, ., 1, ., 20.64960.90060.6157yesno
P17248SYWC_BOVIN6, ., 1, ., 1, ., 20.65300.90060.6092yesno
P32921SYWC_MOUSE6, ., 1, ., 1, ., 20.63240.92540.6195yesno
Q12109SYWC_YEAST6, ., 1, ., 1, ., 20.54390.89440.6666yesno
Q55DZ8SYWC_DICDI6, ., 1, ., 1, ., 20.58560.88500.7125yesno
P23612SYWC_RABIT6, ., 1, ., 1, ., 20.63360.92850.6294yesno
Q09692SYWC_SCHPO6, ., 1, ., 1, ., 20.59180.89130.7265yesno
Q5R4J1SYWC_PONAB6, ., 1, ., 1, ., 20.64960.90060.6144yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.20.914
3rd Layer6.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018613001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (399 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00036385001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (489 aa)
•  •  • 0.964
GSVIVG00017573001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (592 aa)
•  •  • 0.936
GSVIVG00022843001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa)
   •• • 0.923
GSVIVG00027369001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (458 aa)
   • •• 0.905
GSVIVG00001918001
SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (1153 aa)
   •  • 0.905
GSVIVG00006903001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (407 aa)
   • •• 0.897
GSVIVG00000425001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (370 aa)
   •  • 0.867
GSVIVG00021859001
SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (1031 aa)
   •  • 0.830
GSVIVG00002292001
SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (797 aa)
•  •  • 0.819
GSVIVG00035298001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (1025 aa)
   •  • 0.815

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
PLN02486383 PLN02486, PLN02486, aminoacyl-tRNA ligase 0.0
PRK12285368 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; 1e-94
cd00806280 cd00806, TrpRS_core, catalytic core domain of tryp 5e-75
TIGR00233327 TIGR00233, trpS, tryptophanyl-tRNA synthetase 1e-67
COG0180314 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Trans 2e-55
PRK08560329 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Valid 3e-22
pfam00579291 pfam00579, tRNA-synt_1b, tRNA synthetases class I 2e-18
cd00805269 cd00805, TyrRS_core, catalytic core domain of tyro 3e-09
COG0162 401 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translatio 4e-09
TIGR00234 377 TIGR00234, tyrS, tyrosyl-tRNA synthetase 3e-07
PRK00927333 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; 5e-06
PTZ00126383 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provi 2e-05
PRK12282333 PRK12282, PRK12282, tryptophanyl-tRNA synthetase I 8e-05
cd00395273 cd00395, Tyr_Trp_RS_core, catalytic core domain of 1e-04
PRK13354 410 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provi 2e-04
PRK05912 408 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Valid 3e-04
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase Back     alignment and domain information 
 Score =  626 bits (1617), Expect = 0.0
 Identities = 252/288 (87%), Positives = 270/288 (93%), Gaps = 2/288 (0%)

Query: 15  QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
           QVV+PWEVS+   GKIDYDKL+DKFGCQRLD SL+DRV+RLTGRP H FLRRGVFFAHRD
Sbjct: 1   QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRD 60

Query: 73  LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
           L +ILDAYEKGEKFYLYTGRGPSSEALHLGHL+PFMFTKYLQDAFKVPLVIQLTDDEK +
Sbjct: 61  LEEILDAYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFL 120

Query: 133 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
           WKNLSVEESQRLARENAKDIIACGFDV +TFIFSDFDYVGGAFYKNMVK+AKCVT N+V 
Sbjct: 121 WKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVGGAFYKNMVKIAKCVTLNQVR 180

Query: 193 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252
           GIFGF+GED+IGK+SFP VQA PSFPSSFPHLF GKD LRCLIPCAIDQDPYFRMTRDVA
Sbjct: 181 GIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVA 240

Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
           PR+GY+KPALIES FFPALQGE+GKMSASDPNSAIYVTD+ K IKNKI
Sbjct: 241 PRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKI 288

Length = 383
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y) Back     alignment and domain information
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237360 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235645 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 322
KOG2145397 consensus Cytoplasmic tryptophanyl-tRNA synthetase 100.0
PLN02486383 aminoacyl-tRNA ligase 100.0
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 100.0
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 100.0
PRK08560329 tyrosyl-tRNA synthetase; Validated 100.0
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 100.0
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 100.0
PRK13354 410 tyrosyl-tRNA synthetase; Provisional 100.0
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 100.0
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 100.0
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 100.0
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK05912 408 tyrosyl-tRNA synthetase; Validated 100.0
PLN02886389 aminoacyl-tRNA ligase 100.0
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 100.0
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 100.0
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 100.0
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 100.0
PTZ00348 682 tyrosyl-tRNA synthetase; Provisional 100.0
TIGR00234 377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 100.0
PRK12284 431 tryptophanyl-tRNA synthetase; Reviewed 100.0
COG0162 401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 100.0
KOG2713347 consensus Mitochondrial tryptophanyl-tRNA syntheta 100.0
KOG2144360 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Tr 100.0
KOG2623 467 consensus Tyrosyl-tRNA synthetase [Translation, ri 100.0
PTZ00348682 tyrosyl-tRNA synthetase; Provisional 99.96
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.37
cd00808239 GluRS_core catalytic core domain of discriminating 99.21
PRK00750 510 lysK lysyl-tRNA synthetase; Reviewed 98.87
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 98.85
cd00674353 LysRS_core_class_I catalytic core domain of class 98.77
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 98.39
cd09287240 GluRS_non_core catalytic core domain of non-discri 97.88
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 97.62
PRK04156 567 gltX glutamyl-tRNA synthetase; Provisional 97.61
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 97.54
PRK14895 513 gltX glutamyl-tRNA synthetase; Provisional 97.52
PRK01611 507 argS arginyl-tRNA synthetase; Reviewed 97.44
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 97.4
TIGR00464 470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 97.39
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 97.38
COG1384 521 LysS Lysyl-tRNA synthetase (class I) [Translation, 97.25
PRK01406 476 gltX glutamyl-tRNA synthetase; Reviewed 97.16
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 97.06
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 97.04
PLN03233 523 putative glutamate-tRNA ligase; Provisional 97.03
PLN02627 535 glutamyl-tRNA synthetase 96.67
PRK00260 463 cysS cysteinyl-tRNA synthetase; Validated 96.65
COG0215 464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 96.57
PRK12558 445 glutamyl-tRNA synthetase; Provisional 96.33
PLN02859 788 glutamine-tRNA ligase 96.27
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 95.97
TIGR00463 560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 94.78
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 94.6
PRK05347 554 glutaminyl-tRNA synthetase; Provisional 94.15
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 94.06
PTZ00437 574 glutaminyl-tRNA synthetase; Provisional 94.05
PRK12410 433 glutamylglutaminyl-tRNA synthetase; Provisional 93.84
COG0008 472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 93.81
TIGR00440 522 glnS glutaminyl-tRNA synthetase. This protein is a 93.79
PLN02907 722 glutamate-tRNA ligase 93.66
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 92.73
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 92.0
TIGR00456 566 argS arginyl-tRNA synthetase. This model recognize 91.33
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 91.23
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 91.02
KOG1147 712 consensus Glutamyl-tRNA synthetase [Translation, r 90.86
cd02156105 nt_trans nucleotidyl transferase superfamily. nt_t 90.35
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 89.68
PLN02224 616 methionine-tRNA ligase 88.66
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 88.28
PF09334 391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 88.13
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 87.93
PRK12451 562 arginyl-tRNA synthetase; Reviewed 87.05
TIGR00398 530 metG methionyl-tRNA synthetase. The methionyl-tRNA 85.39
PRK12268 556 methionyl-tRNA synthetase; Reviewed 85.24
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 85.1
PRK11893 511 methionyl-tRNA synthetase; Reviewed 84.41
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 83.55
COG0018 577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 83.13
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 82.93
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 82.81
TIGR00435 465 cysS cysteinyl-tRNA synthetase. This model finds t 82.77
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 82.68
PLN02286 576 arginine-tRNA ligase 82.37
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 81.17
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 80.89
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 80.68
PRK11893 511 methionyl-tRNA synthetase; Reviewed 80.62
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=8e-101  Score=703.58  Aligned_cols=313  Identities=65%  Similarity=1.135  Sum_probs=303.6

Q ss_pred             hhhhcccccccCcccC--CCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCce
Q 020745            9 REEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKF   86 (322)
Q Consensus         9 ~~~~~~~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~   86 (322)
                      ..+.+|++||||+|++  ..+|||||||.+|||++|++++++|+|++||++||+|+|||+||+|||++.||+++|+|+||
T Consensus         7 ~~~~~Eq~vtPW~V~~~~~~~IDYdklI~~FG~~k~deeli~R~ek~tg~~~h~flRrg~fFshRDf~~iLd~~eq~kpF   86 (397)
T KOG2145|consen    7 ATEVEEQRVTPWDVETSSADGIDYDKLIVQFGCSKIDEELIDRFEKLTGKPPHHFLRRGIFFSHRDFNLILDAYEQGKPF   86 (397)
T ss_pred             ccchhhcccCcceeecccCCCccHHHHHHHhCcccCCHHHHHHHHHhcCCCchHHhhhcceeecccHHHHHHHHHcCCce
Confidence            4677899999999987  67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 020745           87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS  166 (322)
Q Consensus        87 ~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~  166 (322)
                      |+|||++||+++|||||++|+++++|||++|++|++|+++|+|+++++.++.|++.++++||+++|+|+||||++|+||+
T Consensus        87 yLYTGRGpSS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfIFs  166 (397)
T KOG2145|consen   87 YLYTGRGPSSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIFS  166 (397)
T ss_pred             EEEeCCCCCccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc-ccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHH
Q 020745          167 DFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF  245 (322)
Q Consensus       167 ns~~~~~-~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~  245 (322)
                      |.+|++. .||.++++++|++|+|+++++|||+++.++|++.||..|||++|++|||+|+....|++|||||++|||||+
T Consensus       167 n~~y~g~~~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyF  246 (397)
T KOG2145|consen  167 NLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYF  246 (397)
T ss_pred             chhhccCcHHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCChHH
Confidence            9999874 899999999999999999999999999999999999999999999999999998888999999999999999


Q ss_pred             HHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCccccccCC---CCCC
Q 020745          246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWRTR---KCGI  321 (322)
Q Consensus       246 ~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~~~---~~~~  321 (322)
                      |||||+|+|++++||+.+|+.|+|.|+|+++|||.|+|+++|||+|++++|++||++||||||+.+++-+.+   +|+|
T Consensus       247 RmtRDvA~rlg~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dV  325 (397)
T KOG2145|consen  247 RMTRDVAPRLGYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDV  325 (397)
T ss_pred             HhhhhhhhhhCCCCcceeehhhchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999887743   7765

>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02886 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02156 nt_trans nucleotidyl transferase superfamily Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
2quh_A477 Crystal Structures Of Human Tryptophanyl-Trna Synth 1e-106
1ulh_A390 A Short Peptide Insertion Crucial For Angiostatic A 1e-106
1o5t_A378 Crystal Structure Of The Aminoacylation Catalytic F 1e-104
2ake_A384 Structure Of Human Tryptophanyl-Trna Synthetase In 1e-104
2quj_B384 Crystal Structures Of Human Tryptophanyl-Trna Synth 1e-104
1r6t_A477 Crystal Structure Of Human Tryptophanyl-Trna Synthe 1e-102
2azx_A477 Charged And Uncharged Trnas Adopt Distinct Conforma 1e-102
1r6u_A437 Crystal Structure Of An Active Fragment Of Human Tr 1e-102
3hv0_A393 Tryptophanyl-Trna Synthetase From Cryptosporidium P 4e-88
3i05_A395 Tryptophanyl-Trna Synthetase From Trypanosoma Bruce 4e-86
3kt0_A438 Crystal Structure Of S. Cerevisiae Tryptophanyl-Trn 5e-85
2ip1_A432 Crystal Structure Analysis Of S. Cerevisiae Tryptop 5e-85
3tze_A406 Crystal Structure Of A Tryptophanyl-Trna Synthetase 3e-74
3jxe_A392 Crystal Structure Of Pyrococcus Horikoshii Tryptoph 6e-65
3foc_A451 Tryptophanyl-Trna Synthetase From Giardia Lamblia L 5e-54
3hzr_A386 Tryptophanyl-Trna Synthetase Homolog From Entamoeba 5e-33
3a04_A372 Crystal Structure Of Tryptophanyl-Trna Synthetase F 3e-22
2cyb_A323 Crystal Structure Of Tyrosyl-Trna Synthetase Comple 6e-08
1jii_A 420 Crystal Structure Of S. Aureus Tyrrs In Complex Wit 5e-05
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase In Complex With Trp Length = 477 Back     alignment and structure 
Iteration: 1

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/280 (63%), Positives = 222/280 (79%), Gaps = 4/280 (1%)
Query: 17  VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
           V PW V  SS+  IDYDKLI +FG  ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N
Sbjct: 85  VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMN 144
Query: 75  DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
            +LDAYE  + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
           +L+++++   A ENAKDIIACGFD+ KTFIFSD DY+G    FYKN+VK+ K VT+N+V 
Sbjct: 205 DLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVA 252
           GIFGFT  D IGK+SFP +QA              +  ++CLIPCAIDQDPYFRMTRDVA
Sbjct: 265 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVA 324
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 292
           PRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+
Sbjct: 325 PRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 364
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity Of Human Tryptophanyl-Trna Synthetase Length = 390 Back     alignment and structure
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment Of Human Tryptophanyl-Trna Synthetase Length = 378 Back     alignment and structure
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex With Trna(Trp) Length = 384 Back     alignment and structure
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase Length = 477 Back     alignment and structure
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations When Complexed With Human Tryptophanyl-Trna Synthetase Length = 477 Back     alignment and structure
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human Tryptophanyl-Trna Synthetase With Cytokine Activity Length = 437 Back     alignment and structure
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum Length = 393 Back     alignment and structure
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei Length = 395 Back     alignment and structure
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna Synthet Length = 438 Back     alignment and structure
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl Trna Synthetase Length = 432 Back     alignment and structure
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From Encephalitozoon Cuniculi Bound To Tryptophan Length = 406 Back     alignment and structure
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Tryptophanyl-Trna Synthetase In Complex With Trpamp Length = 392 Back     alignment and structure
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia Length = 451 Back     alignment and structure
>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba Histolytica Length = 386 Back     alignment and structure
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Length = 372 Back     alignment and structure
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With L-Tyrosine From Archaeoglobus Fulgidus Length = 323 Back     alignment and structure
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-219383 Length = 420 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 1e-137
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 1e-134
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 1e-134
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 1e-132
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 1e-129
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 1e-125
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 1e-122
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 1e-117
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 1e-108
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 2e-80
2dlc_X 394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 3e-28
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 4e-24
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 4e-22
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 1e-15
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 1e-19
1n3l_A 372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 1e-16
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 2e-16
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 4e-15
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 3e-10
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 3e-05
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 3e-05
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 4e-05
1h3f_A 432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 8e-05
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 9e-05
2jan_A 432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 1e-04
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 1e-04
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 2e-04
1jil_A 420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 2e-04
2ts1_A 419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 3e-04
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 3e-04
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 3e-04
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 5e-04
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 6e-04
3prh_A 388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 6e-04
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437 Back     alignment and structure
 Score =  393 bits (1012), Expect = e-137
 Identities = 192/301 (63%), Positives = 240/301 (79%), Gaps = 4/301 (1%)

Query: 4   NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
           N      E  E  V PW V  SS+  IDYDKLI +FG  ++D+ L++R++R TG+ PH F
Sbjct: 25  NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 84

Query: 62  LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
           LRRG+FF+HRD+N +LDAYE  + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPL
Sbjct: 85  LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPL 144

Query: 122 VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNM 179
           VIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD DY+G    FYKN+
Sbjct: 145 VIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNV 204

Query: 180 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239
           VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  +  ++CLIPCAI
Sbjct: 205 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAI 264

Query: 240 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299
           DQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK K
Sbjct: 265 DQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTK 324

Query: 300 I 300
           +
Sbjct: 325 V 325
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392 Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477 Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432 Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393 Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395 Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406 Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386 Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451 Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Length = 348 Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394 Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Length = 373 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364 Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372 Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Length = 375 Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323 Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Length = 314 Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Length = 392 Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Length = 337 Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Length = 432 Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Length = 322 Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Length = 432 Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Length = 356 Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Length = 341 Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Length = 420 Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Length = 419 Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Length = 348 Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} PDB: 3m5w_A* Length = 322 Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346 Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Length = 328 Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Length = 388 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query322
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 100.0
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 100.0
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 100.0
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 100.0
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 100.0
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3a04_A372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 100.0
3prh_A 388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 100.0
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 100.0
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 100.0
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 100.0
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 100.0
2jan_A 432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 100.0
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 100.0
2ts1_A 419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 100.0
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
1h3f_A 432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 100.0
1n3l_A 372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 100.0
1jil_A 420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 100.0
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 100.0
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 100.0
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 100.0
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 100.0
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 100.0
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 100.0
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
2dlc_X 394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 100.0
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 100.0
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 98.45
2cfo_A 492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 98.45
1j09_A 468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 98.4
2ja2_A 498 Glutamyl-tRNA synthetase; non-discriminating gluta 98.17
3afh_A 488 Glutamyl-tRNA synthetase 2; protein-substrate comp 98.05
3al0_C 592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 97.95
3aii_A 553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 97.61
2o5r_A 481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 97.49
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 97.19
4g6z_A 490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 97.19
4gri_A 512 Glutamate--tRNA ligase; structural genomics, seatt 96.94
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 94.76
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 94.19
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 93.72
3fnr_A 464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 92.04
2csx_A 497 Methionyl-tRNA synthetase; ligase, riken structura 89.78
2csx_A 497 Methionyl-tRNA synthetase; ligase, riken structura 88.79
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 88.68
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 88.55
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 87.94
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 87.5
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 86.5
2zue_A 629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 85.84
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 84.75
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 84.09
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 83.69
1iq0_A 592 Arginyl-tRNA synthetase; riken structural genomics 83.61
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 83.46
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 82.14
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 81.46
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 81.4
1li5_A 461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 81.04
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 80.15
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 80.13
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
Probab=100.00  E-value=7.4e-89  Score=667.04  Aligned_cols=309  Identities=45%  Similarity=0.848  Sum_probs=275.3

Q ss_pred             hhhcccccccCcccC------CCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhC
Q 020745           10 EEEREQVVSPWEVSS------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG   83 (322)
Q Consensus        10 ~~~~~~~~~pw~v~~------~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~   83 (322)
                      .+++++.||||+|++      .+.|||+|||++||+++||+++++||+++||+++|+|+|||+||+|||+++++++++++
T Consensus        20 ~~~~~~~v~pw~v~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~RG~i~~~~d~~~ll~~~~~~   99 (406)
T 3tze_A           20 GSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAHRDFNLLLDEIANN   99 (406)
T ss_dssp             --------------------CCSCCCHHHHHHTTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTT
T ss_pred             CccCCcccCccccccccccCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCCCeeccccHHHHHHHHhcC
Confidence            667889999999986      23699999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 020745           84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF  163 (322)
Q Consensus        84 ~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~  163 (322)
                      +++++|+||+|||++|||||++++++++|||+++|++++|+|||+||+++++++++++++++++++++|+|+|+||++++
T Consensus       100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~  179 (406)
T 3tze_A          100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTY  179 (406)
T ss_dssp             CCEEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred             CCeEEEEeeCCCCCcccHHHHHHHHHHHHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence            99999999999998999999999999999999989999999999999888779999999999999999999999999999


Q ss_pred             EEecccccccccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhh
Q 020745          164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP  243 (322)
Q Consensus       164 I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~  243 (322)
                      ||+|++|.+ .+|..+++++|++|++++++++||++++|+|+|+||+|||||+|+++||+|+.+.   .|+||||.||+|
T Consensus       180 i~~qs~~~~-~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~---a~lvpvG~DQ~~  255 (406)
T 3tze_A          180 IFSNVEASH-HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAAVDQDP  255 (406)
T ss_dssp             EEEHHHHGG-GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTC---EEEEEEEGGGHH
T ss_pred             EEeccHhHH-HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCC---CeEEeeccchHH
Confidence            999999985 7899999999999999999999998999999999999999999999999998643   499999999999


Q ss_pred             HHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCcccccc---CCCCC
Q 020745          244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWR---TRKCG  320 (322)
Q Consensus       244 ~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~---~~~~~  320 (322)
                      |+++|||+|+|+|+++|+++++++||+|+|+++|||||.|+|+|||+|+|++|++|||+||+||++.++..+   +++|+
T Consensus       256 ~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~  335 (406)
T 3tze_A          256 FFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDID  335 (406)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGG
T ss_pred             HHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCc
Confidence            999999999999999999999999999998767999999889999999999999999998899998887763   45777


Q ss_pred             CC
Q 020745          321 IT  322 (322)
Q Consensus       321 ~~  322 (322)
                      ++
T Consensus       336 v~  337 (406)
T 3tze_A          336 VD  337 (406)
T ss_dssp             GC
T ss_pred             cc
Confidence            53
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 322
d1r6ta2386 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase ( 2e-93
d2ts1a_319 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bac 1e-30
d1jila_323 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Sta 6e-24
d1n3la_339 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Hum 1e-23
d1h3fa1343 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) 1e-23
d1i6la_326 c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) 3e-15
d1j1ua_306 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Arc 1e-13
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  280 bits (718), Expect = 2e-93
 Identities = 190/291 (65%), Positives = 238/291 (81%), Gaps = 4/291 (1%)

Query: 14  EQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
           E  V PW V  SS+  IDYDKLI +FG  ++D+ L++R++R TG+ PH FLRRG+FF+HR
Sbjct: 1   EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHR 60

Query: 72  DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
           D+N +LDAYE  + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK 
Sbjct: 61  DMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKY 120

Query: 132 MWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYN 189
           +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD DY+G    FYKN+VK+ K VT+N
Sbjct: 121 LWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFN 180

Query: 190 KVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTR 249
           +V GIFGFT  D IGK+SFP +QA PSF +SFP +F  +  ++CLIPCAIDQDPYFRMTR
Sbjct: 181 QVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTR 240

Query: 250 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
           DVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK K+
Sbjct: 241 DVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKV 291
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 319 Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 323 Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Length = 343 Back     information, alignment and structure
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Length = 326 Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 306 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query322
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 100.0
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 100.0
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 100.0
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 100.0
d1i6la_326 Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste 100.0
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 100.0
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 100.0
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 97.8
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 97.73
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 95.51
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 94.86
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 93.94
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 93.44
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 93.11
d1ilea3 452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 92.98
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 92.62
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 91.74
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 91.15
d1ivsa4 425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 89.26
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 87.79
d1rqga2 361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 87.44
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 86.03
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 83.36
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 82.95
d1h3na3 494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 82.1
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 80.29
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-88  Score=660.06  Aligned_cols=299  Identities=63%  Similarity=1.129  Sum_probs=286.0

Q ss_pred             ccccccCcccC--CCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCceEEEEe
Q 020745           14 EQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG   91 (322)
Q Consensus        14 ~~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG   91 (322)
                      |++||||+|++  .+.|||+||+++|||++||+++++|++++||++||+|+|||+||+|||++.|++++++|+|+++|||
T Consensus         1 ~~~~~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~rRg~~f~hrd~~~il~~~~~gkp~~vytG   80 (386)
T d1r6ta2           1 EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG   80 (386)
T ss_dssp             CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEE
T ss_pred             CCccCcccccCCCcccccHHHHHHHhCCCcCCHHHHHHHHHhccCCcchhhhcceeeeccCHHHHHHHHHcCCCeEEEec
Confidence            67999999976  4569999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745           92 RGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV  171 (322)
Q Consensus        92 ~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~  171 (322)
                      |+|||++|||||++++++++|+|+++|++++|+|||+||++++.++++++++++++++++++||||||++++||+|++|.
T Consensus        81 ~~PSg~~lHlGh~v~~~~~~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~~~~~~e~~~~~lA~GlDp~kt~i~~~s~~~  160 (386)
T d1r6ta2          81 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYM  160 (386)
T ss_dssp             ECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHG
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHhcccceEEEecchHhhhcccCCHHHHHHHHHHHHHHHHHhCCCccceEEEeCcHHH
Confidence            99999779999999999999999988999999999999998888999999999999999999999999999999999997


Q ss_pred             cc--ccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHH
Q 020745          172 GG--AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTR  249 (322)
Q Consensus       172 ~~--~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltr  249 (322)
                      ..  .+|.+++++++++|++++++++|+.+++|+|+++||+|||||+|+.++++++..+.+.+|+||||.||+||+++||
T Consensus       161 ~~l~~~~~~~~~l~r~~t~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~~~d~~~~~~~~~~~lvpvG~DQ~~h~~ltR  240 (386)
T d1r6ta2         161 GMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTR  240 (386)
T ss_dssp             GGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHhhccccCCcCcccccHHHHHHHHHHhcChhhhccccccccccccchhHHHHHHHHH
Confidence            53  5789999999999999999999999999999999999999999999999999888888999999999999999999


Q ss_pred             HHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCccc
Q 020745          250 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCI  312 (322)
Q Consensus       250 dla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~  312 (322)
                      |+|+|+|+++|++++++++|+|+|+++|||||.|+|+|||+|+|++|++||++++|++++.+.
T Consensus       241 Dia~r~~~~~p~~l~~~~lpgL~G~~~KMSsS~~~s~I~l~D~~~~i~~KI~~~~~~~~~~~~  303 (386)
T d1r6ta2         241 DVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTI  303 (386)
T ss_dssp             HHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSH
T ss_pred             HHHHHhCCCCceeeccccccCCCCcccccccCCCCceeeecCCHHHHHHHhhheeeecCCccc
Confidence            999999999999999999999999778999999999999999999999999999898887664
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure