Citrus Sinensis ID: 020779

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDCAFHIFLHFFVPMNSKILWPFCLFCVPLVLLVLHASMRF
ccHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHccccccEEEEEEccccccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccc
cccHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccEEEEEEccccccccccccccEEEEEEccEEccccccccccccHHHHHHHHHHHHHHHHccccccHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccEcccHHHHHHHHHHHHHHHHccc
MKGETVVIITKFQLFNHINSLFfnlgsglssstafVCSSTVALMAAFGVEVPKKEIAQLTCECEQfigtqsggmDQAISIMAKSGfaelidfnpirttdvqlpaggTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAckngssdpvFAVKEFlrkepytaldiEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHafkdtvssnlseeDKLKKLGdlmndshhscsvlyecrymhDCAFHIFLHffvpmnskilwpfclfCVPLVLLVLHASMRF
MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAasnynnrvVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFackngssdpVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHafkdtvssnlseEDKLKKLGDLMNDSHHSCSVLYECRYMHDCAFHIFLHFFVPMNSKILWPFCLFCVPLVLLVLHASMRF
MKGETVVIITKFQLFNHInslffnlgsglsssTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDCAFHIFLHFFVPMNSKILWpfclfcvplvllvlHASMRF
****TVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKIT*****************************AAHVYS*******************************SHHSCSVLYECRYMHDCAFHIFLHFFVPMNSKILWPFCLFCVPLVLLVLHA****
MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDCAFHIFLHFFVPMNSKILWPFCLFCVPLVLLVLHASMRF
MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDCAFHIFLHFFVPMNSKILWPFCLFCVPLVLLVLHASMRF
MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDCAFHIFLHFFVPMNSKILWPFCLFCVPLVLLVLHASMRF
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MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDCAFHIFLHFFVPMNSKILWPFCLFCVPLVLLVLHASMRF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query321 2.2.26 [Sep-21-2011]
Q9SEE5496 Galactokinase OS=Arabidop yes no 0.785 0.508 0.769 1e-107
Q54DN6501 Galactokinase OS=Dictyost yes no 0.753 0.483 0.366 1e-39
Q5XIG6458 N-acetylgalactosamine kin yes no 0.694 0.486 0.388 4e-37
Q01415458 N-acetylgalactosamine kin yes no 0.694 0.486 0.396 9e-36
Q5R6J8458 N-acetylgalactosamine kin yes no 0.694 0.486 0.396 1e-35
Q68FH4458 N-acetylgalactosamine kin yes no 0.704 0.493 0.356 1e-35
P04385528 Galactokinase OS=Saccharo yes no 0.747 0.454 0.343 3e-23
O42821504 Galactokinase OS=Candida N/A no 0.809 0.515 0.331 2e-22
P09608503 Galactokinase OS=Kluyvero yes no 0.744 0.475 0.321 8e-21
P56091515 Galactokinase OS=Candida N/A no 0.760 0.473 0.328 1e-20
>sp|Q9SEE5|GALK1_ARATH Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=1 SV=2 Back     alignment and function desciption
 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/252 (76%), Positives = 224/252 (88%)

Query: 26  GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
           GSGLSSS AFVCS+T+A+MA FG    KKE+AQLTCECE+ IGTQSGGMDQAISIMAK+G
Sbjct: 161 GSGLSSSAAFVCSATIAIMAVFGHNFEKKELAQLTCECERHIGTQSGGMDQAISIMAKTG 220

Query: 86  FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
           FAELIDFNP+R TDV+LP GG+FV+AHSLAES KA+TAA NYNNRVVECRL +I+L +KL
Sbjct: 221 FAELIDFNPVRATDVKLPDGGSFVIAHSLAESQKAVTAAKNYNNRVVECRLASIILGVKL 280

Query: 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLT 205
           GM+P+EAISKVKTLSDVEGLCV+FA   GSSDP+ AVKE+L++EPYTA +IEKI EEKL 
Sbjct: 281 GMEPKEAISKVKTLSDVEGLCVSFAGDRGSSDPLLAVKEYLKEEPYTAEEIEKILEEKLP 340

Query: 206 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN 265
           SI  N  +SL VLNAA  +KLHQRAAHVYSEA+RVH FKDTV+SNLS+E+KLKKLGDLMN
Sbjct: 341 SIVNNDPTSLAVLNAATHFKLHQRAAHVYSEARRVHGFKDTVNSNLSDEEKLKKLGDLMN 400

Query: 266 DSHHSCSVLYEC 277
           +SH+SCSVLYEC
Sbjct: 401 ESHYSCSVLYEC 412
Sugar-1-kinase with a very high substrate specificity for the alpha-anomeric configuration of D-galacose (D-Gal). Converts also efficiently 2-deoxy-D-Gal to 2-deoxy-D-al-1-phosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 6
>sp|Q54DN6|GALK_DICDI Galactokinase OS=Dictyostelium discoideum GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q5XIG6|GALK2_RAT N-acetylgalactosamine kinase OS=Rattus norvegicus GN=Galk2 PE=2 SV=1 Back     alignment and function description
>sp|Q01415|GALK2_HUMAN N-acetylgalactosamine kinase OS=Homo sapiens GN=GALK2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R6J8|GALK2_PONAB N-acetylgalactosamine kinase OS=Pongo abelii GN=GALK2 PE=2 SV=1 Back     alignment and function description
>sp|Q68FH4|GALK2_MOUSE N-acetylgalactosamine kinase OS=Mus musculus GN=Galk2 PE=1 SV=1 Back     alignment and function description
>sp|P04385|GAL1_YEAST Galactokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL1 PE=1 SV=4 Back     alignment and function description
>sp|O42821|GAL1_CANPA Galactokinase OS=Candida parapsilosis GN=GAL1 PE=3 SV=1 Back     alignment and function description
>sp|P09608|GAL1_KLULA Galactokinase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAL1 PE=2 SV=2 Back     alignment and function description
>sp|P56091|GAL1_CANAX Galactokinase OS=Candida albicans GN=GAL1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
255556438 499 galactokinase, putative [Ricinus communi 0.785 0.505 0.805 1e-116
224108774 496 predicted protein [Populus trichocarpa] 0.785 0.508 0.813 1e-115
224101523 496 predicted protein [Populus trichocarpa] 0.785 0.508 0.801 1e-113
84468320 496 putative galactose kinase [Trifolium pra 0.785 0.508 0.797 1e-113
356521747 497 PREDICTED: galactokinase-like [Glycine m 0.785 0.507 0.789 1e-113
356565073 497 PREDICTED: galactokinase-like [Glycine m 0.785 0.507 0.793 1e-113
209978716 500 galactokinase [Cucumis melo] 0.785 0.504 0.781 1e-112
357479039 497 Galactokinase [Medicago truncatula] gi|3 0.785 0.507 0.781 1e-111
449466203 426 PREDICTED: galactokinase-like [Cucumis s 0.785 0.591 0.777 1e-111
449516960 499 PREDICTED: galactokinase-like [Cucumis s 0.785 0.505 0.777 1e-111
>gi|255556438|ref|XP_002519253.1| galactokinase, putative [Ricinus communis] gi|223541568|gb|EEF43117.1| galactokinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/252 (80%), Positives = 230/252 (91%)

Query: 26  GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
           GSGLSSS AFVCS+T+A+MAAF V  PKKEIAQLTCECE+ IGTQSGGMDQAIS+MA++G
Sbjct: 164 GSGLSSSAAFVCSATIAIMAAFNVNFPKKEIAQLTCECERHIGTQSGGMDQAISVMAQTG 223

Query: 86  FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
           FAELIDFNPIR TDVQLPAGGTFV+AHSLAES KA+TAA+NYNNRVVECRL AI+L +KL
Sbjct: 224 FAELIDFNPIRATDVQLPAGGTFVIAHSLAESQKAVTAATNYNNRVVECRLAAILLGVKL 283

Query: 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLT 205
           GMKPQ+AI KVKTLSDVEGLCV+FA    S+DP  AVKEFL++EPY+A +IEKITEE L+
Sbjct: 284 GMKPQDAILKVKTLSDVEGLCVSFAGTRDSADPAVAVKEFLKEEPYSAEEIEKITEEDLS 343

Query: 206 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN 265
           SIF+NS +SLDVL AAK +KLHQRAAHVYSEAKRVHAFKDTVSS LS+EDKLKKLGDLMN
Sbjct: 344 SIFSNSPTSLDVLKAAKHFKLHQRAAHVYSEAKRVHAFKDTVSSKLSDEDKLKKLGDLMN 403

Query: 266 DSHHSCSVLYEC 277
           +SH+SCS+LYEC
Sbjct: 404 ESHYSCSILYEC 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224108774|ref|XP_002314964.1| predicted protein [Populus trichocarpa] gi|222864004|gb|EEF01135.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224101523|ref|XP_002312315.1| predicted protein [Populus trichocarpa] gi|222852135|gb|EEE89682.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|84468320|dbj|BAE71243.1| putative galactose kinase [Trifolium pratense] Back     alignment and taxonomy information
>gi|356521747|ref|XP_003529513.1| PREDICTED: galactokinase-like [Glycine max] Back     alignment and taxonomy information
>gi|356565073|ref|XP_003550769.1| PREDICTED: galactokinase-like [Glycine max] Back     alignment and taxonomy information
>gi|209978716|gb|ACJ04703.1| galactokinase [Cucumis melo] Back     alignment and taxonomy information
>gi|357479039|ref|XP_003609805.1| Galactokinase [Medicago truncatula] gi|355510860|gb|AES92002.1| Galactokinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449466203|ref|XP_004150816.1| PREDICTED: galactokinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516960|ref|XP_004165514.1| PREDICTED: galactokinase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
TAIR|locus:2084344496 GALK [Arabidopsis thaliana (ta 0.760 0.491 0.766 1.7e-98
RGD|1308691458 Galk2 "galactokinase 2" [Rattu 0.697 0.489 0.390 2.7e-36
DICTYBASE|DDB_G0292112501 galK "galactokinase" [Dictyost 0.728 0.467 0.370 5.7e-36
UNIPROTKB|F1MFK7447 GALK2 "Uncharacterized protein 0.704 0.505 0.381 9.2e-36
UNIPROTKB|F1SQG6458 GALK2 "Uncharacterized protein 0.697 0.489 0.390 1.9e-35
UNIPROTKB|E2RDA6458 GALK2 "Uncharacterized protein 0.697 0.489 0.394 2.4e-35
UNIPROTKB|E1C902398 GALK2 "Uncharacterized protein 0.710 0.572 0.396 4e-35
UNIPROTKB|F1P1D1461 GALK2 "Uncharacterized protein 0.710 0.494 0.396 4e-35
MGI|MGI:1917226458 Galk2 "galactokinase 2" [Mus m 0.704 0.493 0.369 4e-35
UNIPROTKB|B7ZAX5434 GALK2 "cDNA, FLJ79339, highly 0.697 0.516 0.398 5.1e-35
TAIR|locus:2084344 GALK [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 187/244 (76%), Positives = 217/244 (88%)

Query:    34 AFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93
             AFVCS+T+A+MA FG    KKE+AQLTCECE+ IGTQSGGMDQAISIMAK+GFAELIDFN
Sbjct:   169 AFVCSATIAIMAVFGHNFEKKELAQLTCECERHIGTQSGGMDQAISIMAKTGFAELIDFN 228

Query:    94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153
             P+R TDV+LP GG+FV+AHSLAES KA+TAA NYNNRVVECRL +I+L +KLGM+P+EAI
Sbjct:   229 PVRATDVKLPDGGSFVIAHSLAESQKAVTAAKNYNNRVVECRLASIILGVKLGMEPKEAI 288

Query:   154 SKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSS 213
             SKVKTLSDVEGLCV+FA   GSSDP+ AVKE+L++EPYTA +IEKI EEKL SI  N  +
Sbjct:   289 SKVKTLSDVEGLCVSFAGDRGSSDPLLAVKEYLKEEPYTAEEIEKILEEKLPSIVNNDPT 348

Query:   214 SLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSV 273
             SL VLNAA  +KLHQRAAHVYSEA+RVH FKDTV+SNLS+E+KLKKLGDLMN+SH+SCSV
Sbjct:   349 SLAVLNAATHFKLHQRAAHVYSEARRVHGFKDTVNSNLSDEEKLKKLGDLMNESHYSCSV 408

Query:   274 LYEC 277
             LYEC
Sbjct:   409 LYEC 412
GO:0004335 "galactokinase activity" evidence=IEA;IGI;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006012 "galactose metabolic process" evidence=IEA;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0016301 "kinase activity" evidence=IEA
GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA
GO:0046835 "carbohydrate phosphorylation" evidence=IEA;IDA
GO:0005829 "cytosol" evidence=IDA
RGD|1308691 Galk2 "galactokinase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292112 galK "galactokinase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1MFK7 GALK2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQG6 GALK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDA6 GALK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1C902 GALK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1D1 GALK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1917226 Galk2 "galactokinase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|B7ZAX5 GALK2 "cDNA, FLJ79339, highly similar to N-acetylgalactosamine kinase (EC 2.7.1.157)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SEE5GALK1_ARATH2, ., 7, ., 1, ., 60.76980.78500.5080yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.60.914
3rd Layer2.7.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_X0656
galactokinase (EC-2.7.1.6) (496 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00061661
galactose-1-phosphate uridylyltransferase (EC-2.7.7.10) (348 aa)
•  • •• 0.943
estExt_fgenesh4_pm.C_LG_III0678
hypothetical protein (1114 aa)
• •  •• 0.932
fgenesh4_pg.C_LG_I000259
hypothetical protein (1110 aa)
• •  •• 0.931
gw1.XIX.1583.1
alpha-galactosidase (380 aa)
     •  0.899
gw1.X.3030.1
alpha-galactosidase (EC-2.4.1.67) (369 aa)
     •  0.899
gw1.44.267.1
hypothetical protein (643 aa)
     •  0.899
fgenesh4_pm.C_LG_IV000085
hypothetical protein (379 aa)
     •  0.899
fgenesh4_pg.C_scaffold_164000005
alpha-galactosidase (EC-3.2.1.22) (367 aa)
     •  0.899
eugene3.00101110
alpha-galactosidase (EC-3.2.1.22) (386 aa)
     •  0.899
gw1.VI.1302.1
galactokinase (EC-2.7.1.6) (413 aa)
  •  • •0.841

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
PLN02521497 PLN02521, PLN02521, galactokinase 1e-167
COG0153390 COG0153, GalK, Galactokinase [Carbohydrate transpo 7e-29
TIGR00131386 TIGR00131, gal_kin, galactokinase 1e-24
PRK05322387 PRK05322, PRK05322, galactokinase; Provisional 4e-12
PRK03817351 PRK03817, PRK03817, galactokinase; Provisional 2e-11
pfam0028867 pfam00288, GHMP_kinases_N, GHMP kinases N terminal 8e-11
PRK00555363 PRK00555, PRK00555, galactokinase; Provisional 6e-09
PRK05101382 PRK05101, PRK05101, galactokinase; Provisional 2e-08
PLN02865423 PLN02865, PLN02865, galactokinase 1e-06
TIGR00549274 TIGR00549, mevalon_kin, mevalonate kinase 5e-05
COG1577307 COG1577, ERG12, Mevalonate kinase [Lipid metabolis 5e-05
PRK03926302 PRK03926, PRK03926, mevalonate kinase; Provisional 0.002
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase Back     alignment and domain information 
 Score =  473 bits (1220), Expect = e-167
 Identities = 191/252 (75%), Positives = 219/252 (86%)

Query: 26  GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
           GSGLSSS A VCS+ +A+MAA G+   KKE+AQ TC+CE+ IGTQSGGMDQAISIMA+ G
Sbjct: 161 GSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQG 220

Query: 86  FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
            A+LIDFNP+R TDVQLPAGGTFV+A+SLAES KA+TAA+NYNNRVVECRL AIVLA+KL
Sbjct: 221 VAKLIDFNPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKL 280

Query: 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLT 205
           GM  +EAISKVKTLSDVEGLCV+FA  +GSSDP  AVKE L + PYTA +IE+I  E LT
Sbjct: 281 GMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLT 340

Query: 206 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN 265
           SIF NS +SL VL AAK +KLHQRA HVYSEAKRVHAF+DTVSS+LSEE+KLKKLGDLMN
Sbjct: 341 SIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMN 400

Query: 266 DSHHSCSVLYEC 277
           +SH+SCSVLYEC
Sbjct: 401 ESHYSCSVLYEC 412

Length = 497
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase Back     alignment and domain information
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain Back     alignment and domain information
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase Back     alignment and domain information
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase Back     alignment and domain information
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 321
COG0153390 GalK Galactokinase [Carbohydrate transport and met 100.0
PLN02521497 galactokinase 100.0
PLN02865423 galactokinase 100.0
PTZ00290468 galactokinase; Provisional 100.0
PRK05322387 galactokinase; Provisional 100.0
PRK05101382 galactokinase; Provisional 100.0
KOG0631489 consensus Galactokinase [Carbohydrate transport an 100.0
TIGR00131386 gal_kin galactokinase. The galactokinases found by 100.0
PRK00555363 galactokinase; Provisional 100.0
PRK03817351 galactokinase; Provisional 100.0
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.89
PTZ00298328 mevalonate kinase; Provisional 99.86
PLN02677387 mevalonate kinase 99.83
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.82
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 99.81
PRK03926302 mevalonate kinase; Provisional 99.79
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 99.78
COG2605333 Predicted kinase related to galactokinase and meva 99.63
KOG1511397 consensus Mevalonate kinase MVK/ERG12 [Lipid trans 99.6
PF0028867 GHMP_kinases_N: GHMP kinases N terminal domain; In 99.56
PLN02451370 homoserine kinase 99.54
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 99.38
PRK01212301 homoserine kinase; Provisional 99.34
PRK01123282 shikimate kinase; Provisional 99.29
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.19
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.14
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.14
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 99.14
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.13
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 99.11
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 99.06
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 99.01
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.0
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.95
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 98.93
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 98.9
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.9
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.9
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 98.86
PTZ00299336 homoserine kinase; Provisional 98.83
COG1685278 Archaeal shikimate kinase [Amino acid transport an 98.75
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.73
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.62
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.61
PRK04181257 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.45
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.32
COG4542293 PduX Protein involved in propanediol utilization, 98.32
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.31
PLN02407343 diphosphomevalonate decarboxylase 98.27
COG1829283 Predicted archaeal kinase (sugar kinase superfamil 98.17
PRK05905258 hypothetical protein; Provisional 98.01
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 97.79
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 97.73
KOG2833395 consensus Mevalonate pyrophosphate decarboxylase [ 97.42
COG1907312 Predicted archaeal sugar kinases [General function 97.37
KOG4644948 consensus L-fucose kinase [Carbohydrate transport 97.09
COG3890337 ERG8 Phosphomevalonate kinase [Lipid metabolism] 96.0
KOG4519459 consensus Phosphomevalonate kinase [Lipid transpor 90.94
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 90.83
KOG1537355 consensus Homoserine kinase [Amino acid transport 89.48
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-58  Score=443.28  Aligned_cols=229  Identities=31%  Similarity=0.384  Sum_probs=205.5

Q ss_pred             CcceEEEecc---cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhCCCCCcccc
Q 020779            1 MKGETVVIIT---KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQ   76 (321)
Q Consensus         1 ~~g~~~~l~~---~~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~aE~-~~G~~~G~mDq   76 (321)
                      +||+++.+..   .++|++++|.||||.|+|||||||++||++.++.++++.++++.+++++|+++|| |+|++||+|||
T Consensus        99 vkgvi~~l~~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ  178 (390)
T COG0153          99 VKGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQ  178 (390)
T ss_pred             HHHHHHHHHhcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHH
Confidence            4788888888   6789999999999999999999999999999999999999999999999999998 99999999999


Q ss_pred             eeeeeccCCceEEeeeCCCeeEEeecCCC-ceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcc
Q 020779           77 AISIMAKSGFAELIDFNPIRTTDVQLPAG-GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISK  155 (321)
Q Consensus        77 ~a~~~g~~g~~l~id~~~~~~~~i~~p~~-~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~  155 (321)
                      +++.+|++|+++++||++++++++|+|.+ +.|||+||++   ||.+++++||+|++||+.|++.|++ +          
T Consensus       179 ~~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~ivI~ns~v---kr~la~seYn~Rr~ece~A~~~l~~-~----------  244 (390)
T COG0153         179 LASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERRAECEEAAEFLGV-S----------  244 (390)
T ss_pred             HHHHhCCCCcEEEEEcccCceEEeccCccceEEEEecCCC---ccccchhHHHHHHHHHHHHHHHHHH-h----------
Confidence            99999999999999999999999999975 9999999999   8999999999999999999999998 2          


Q ss_pred             cCcchhhHhHHhhhhcCCCCCCcHHHHHHhhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhh
Q 020779          156 VKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS  235 (321)
Q Consensus       156 ~~~Lrdv~~~~~~~~~~~~~~~~~~~v~~~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~t  235 (321)
                      +++|||+++.                             ++++......               .  +..++||++|+++
T Consensus       245 ~~~L~d~~~~-----------------------------~~~~~~~~i~---------------~--~~~~~rRa~hvv~  278 (390)
T COG0153         245 IKSLRDVTDE-----------------------------EFAALQAEIE---------------V--DPKIARRARHVVT  278 (390)
T ss_pred             hhhhhhcCHH-----------------------------HHHhhhhhcc---------------c--chHHHHHHHHHHh
Confidence            2479988763                             3333321100               0  1257999999999


Q ss_pred             HhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHHhccc
Q 020779          236 EAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLHFFVP  294 (321)
Q Consensus       236 E~~RV~~~~~aL~~~d~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~~~~~  294 (321)
                      ||+||+++++||+++|     +++||+|||+||+||||+|||||||+| ++++++...+.
T Consensus       279 En~Rvl~a~~Al~~~d-----l~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~  333 (390)
T COG0153         279 ENQRVLEAAKALRSGD-----LTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGA  333 (390)
T ss_pred             HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCc
Confidence            9999999999999999     999999999999999999999999986 78888776664

>PLN02521 galactokinase Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] Back     alignment and domain information
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] Back     alignment and domain information
>PRK05905 hypothetical protein; Provisional Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] Back     alignment and domain information
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism] Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
2a2d_A478 X-Ray Structure Of Human N-Acetyl Galactosamine Kin 6e-37
2aj4_A548 Crystal Structure Of Saccharomyces Cerevisiae Galac 8e-21
3v5r_A505 Crystal Structure Of The Unliganded Form Of Gal3p L 7e-20
3v2u_C520 Crystal Structure Of The Yeast Gal Regulon Complex 8e-20
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase Complexed With Mn-Amppnp And N-Acetyl Glactosamine Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  151 bits (381), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/250 (39%), Positives = 145/250 (58%), Gaps = 27/250 (10%)
Query: 34  AFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93
           A VC + +  +   G  + K E+A++  + E++IGT+ GGMDQ+IS +A+ G A+LI+F+
Sbjct: 169 ALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFS 228
Query: 94  PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153
           P+R TDV+LP+G  FV+A+S  E  KA  A S++N RV+ECRL A +LA    ++     
Sbjct: 229 PLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKYKSLQ----W 282
Query: 154 SKVKTLSDVEGLCVAFACKNGSS--DPVFAVKEFLRKEPYTALDIEKI----TEEKLTSI 207
            KV  L +V+        K G S  + +   ++ L  EPY   +I +      EE  T I
Sbjct: 283 DKVLRLEEVQA-------KLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQI 335
Query: 208 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS 267
              S ++ DVL     +KL+QRA HVYSEA RV  FK       + E+ ++ LG+LMN S
Sbjct: 336 L--SPNTQDVL----IFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQS 387
Query: 268 HHSCSVLYEC 277
           H SC  +YEC
Sbjct: 388 HMSCRDMYEC 397
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Galactokinase In Complex With Galactose And Mg:amppnp Length = 548 Back     alignment and structure
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p Length = 505 Back     alignment and structure
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The Repressor, Gal80p, And The Transducer, Gal3p, With Galactose And Atp Length = 520 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 1e-68
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 2e-52
1pie_A419 Galactokinase; galactose, galactosemia, transferas 6e-32
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 2e-31
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 1e-28
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 2e-12
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-11
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 8e-11
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 7e-10
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 9e-08
3k17_A365 LIN0012 protein; protein structure initiative II(P 6e-07
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 Back     alignment and structure
 Score =  220 bits (563), Expect = 1e-68
 Identities = 96/253 (37%), Positives = 142/253 (56%), Gaps = 15/253 (5%)

Query: 25  LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84
             SGLSSS+A VC + +  +   G  + K E+A++  + E++IGT+ GGMDQ+IS +A+ 
Sbjct: 160 PSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEE 219

Query: 85  GFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144
           G A+LI+F+P+R TDV+LP+G  FV+A+S  E  KA  A S++N RV+ECRL A +LA  
Sbjct: 220 GTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKY 277

Query: 145 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKL 204
             ++      KV  L +V+             + +   ++ L  EPY   +I +     L
Sbjct: 278 KSLQWD----KVLRLEEVQAK-----LGISLEEMLLVTEDALHPEPYNPEEICRCLGISL 328

Query: 205 TSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLM 264
             +     S          +KL+QRA HVYSEA RV  FK       + E+ ++ LG+LM
Sbjct: 329 EELRTQILSPNTQD--VLIFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELM 384

Query: 265 NDSHHSCSVLYEC 277
           N SH SC  +YEC
Sbjct: 385 NQSHMSCRDMYEC 397
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 100.0
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 100.0
1pie_A419 Galactokinase; galactose, galactosemia, transferas 100.0
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 100.0
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 100.0
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 99.95
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 99.92
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 99.91
3k17_A365 LIN0012 protein; protein structure initiative II(P 99.9
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.88
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 99.88
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 99.86
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.85
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 99.84
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.83
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 99.81
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 99.68
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 99.44
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 99.38
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.3
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 99.25
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 99.17
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.14
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.08
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 98.94
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 98.85
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 98.59
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
Probab=100.00  E-value=2.6e-56  Score=450.00  Aligned_cols=276  Identities=29%  Similarity=0.415  Sum_probs=241.4

Q ss_pred             cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHhhCCCCCcccceeeeeccCCce
Q 020779           11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA   87 (321)
Q Consensus        11 ~~~G~~i~I~s~IP~gsGLsSSAAl~VA~~~Al~~l~---g~~ls~~ela~la~~aE~~~G~~~G~mDq~a~~~g~~g~~   87 (321)
                      ++.||++.|.|+||+|+||  |||++||++.|++.++   +.++++.+++++|+++|+++|.|||+|||+++++|++|++
T Consensus       144 ~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~  221 (520)
T 3v2u_C          144 PLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHA  221 (520)
T ss_dssp             CCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBE
T ss_pred             CCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeE
Confidence            4689999999999999999  9999999999999999   7789999999999999999999999999999999999999


Q ss_pred             EEeeeCC-CeeEEeecCC----CceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchh----hhcccCc
Q 020779           88 ELIDFNP-IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQE----AISKVKT  158 (321)
Q Consensus        88 l~id~~~-~~~~~i~~p~----~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~----~~~~~~~  158 (321)
                      ++|||++ ++++++|+|+    ++.|+|+||+++++||.+++++||.||+||+.|+++|++++|++...    ......+
T Consensus       222 l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~s  301 (520)
T 3v2u_C          222 LYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGN  301 (520)
T ss_dssp             EEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCC
T ss_pred             EEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCccccccccccccccc
Confidence            9999999 9999999997    89999999999999999999999999999999999999998875210    0112358


Q ss_pred             chhhHhHHhh--------hh-----cCCCCCCcHHHHHHhhcc--CCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhh
Q 020779          159 LSDVEGLCVA--------FA-----CKNGSSDPVFAVKEFLRK--EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ  223 (321)
Q Consensus       159 Lrdv~~~~~~--------~~-----~~~~~~~~~~~v~~~l~~--~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (321)
                      |||+++.++.        |.     +..++.+|++.+++.+.+  ++||++|+++.+|++.+++.++|++.+|+  +.+.
T Consensus       302 LRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~  379 (520)
T 3v2u_C          302 LRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQV  379 (520)
T ss_dssp             HHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESC
T ss_pred             HHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--cccc
Confidence            9999875431        10     012345677778887765  48999999999998888898999999997  7788


Q ss_pred             hhhhhhhhhhhhHhHHHHHHHHHHhcCC--CChHHHHHHHHHHHHhhhhhhhhcCCCCHHhH-HHHHHHH
Q 020779          224 YKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECRYMHDC-AFHIFLH  290 (321)
Q Consensus       224 ~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d--~~~~~~~~lG~LMn~SH~Slr~~ye~ScpEl~-~~~~~~~  290 (321)
                      |.+|+||+|||+|++||++|+++|++++  ++++++++||+||++||.|||++|||||||+| +++++++
T Consensus       380 ~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~  449 (520)
T 3v2u_C          380 LKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALA  449 (520)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence            8999999999999999999999999974  22346999999999999999999999999986 6688876
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 321
d1wuua1215 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi 5e-16
d1s4ea1176 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ 1e-14
d1piea1205 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact 2e-13
d1kkha1180 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met 2e-07
d1kvka1225 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus 1e-05
d1k47a1194 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) 1e-04
d1piea2183 d.58.26.7 (A:214-396) Galactokinase {Lactococcus l 2e-04
d1s4ea2171 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyro 5e-04
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (179), Expect = 5e-16
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 15  FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGG 73
           F+ +      LG GLSSS +   ++   L             AQ+  + E  F G   G 
Sbjct: 124 FSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGI 183

Query: 74  MDQAISIMAKSGFAELIDFNPIRTTDVQLP 103
           MDQ IS+M + G A LID   + T+ V L 
Sbjct: 184 MDQFISLMGQKGHALLIDCRSLETSLVPLS 213
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176 Back     information, alignment and structure
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205 Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180 Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 225 Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 194 Back     information, alignment and structure
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 183 Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 99.96
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.94
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 99.94
d1s4ea1176 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.91
d1wuua1215 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 99.9
d1piea1205 Galactokinase {Lactococcus lactis [TaxId: 1358]} 99.89
d1kkha1180 Mevalonate kinase {Archaeon Methanococcus jannasch 99.63
d1kvka1225 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.6
d1k47a1194 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.4
d1h72c1163 Homoserine kinase {Archaeon Methanococcus jannasch 99.37
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 98.15
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 97.84
d1oj4a1163 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.67
d1ueka1148 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.26
d1fi4a1188 Mevalonate 5-diphosphate decarboxylase {Baker's ye 97.25
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 97.07
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=99.96  E-value=2.1e-29  Score=220.36  Aligned_cols=125  Identities=21%  Similarity=0.203  Sum_probs=105.7

Q ss_pred             CceEEEEecCccchhhcccccchHHHHHHHHHHHHHHHHHhCCCchhhhcccCcchhhHhHHhhhhcCCCCCCcHHHHHH
Q 020779          105 GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKE  184 (321)
Q Consensus       105 ~~~~vv~~S~v~~~k~~~a~~~Yn~Rv~Ec~~Aa~~L~~~~gi~~~~~~~~~~~Lrdv~~~~~~~~~~~~~~~~~~~v~~  184 (321)
                      ++.|+|+|||+   +|.+++++||+|+.||+.|++.+++++|+         .+|+|++.                    
T Consensus         1 dy~lvi~dS~v---~h~L~~s~Yn~R~~ec~~a~~~v~~~~~~---------~~L~~v~~--------------------   48 (183)
T d1piea2           1 DYDIVIMNTNK---PRALTESKYNERFAETREALKRMQTRLDI---------QSLGELSN--------------------   48 (183)
T ss_dssp             TEEEEEEECCC---CCCTTCHHHHHHHHHHHHHHHHHHHHCCC---------SSGGGCCH--------------------
T ss_pred             CeEEEEEeCCC---CcCcCcchhHHHHHHHHHHHHHHHHhcCc---------chHhhhcH--------------------
Confidence            57899999999   79999999999999999999999988665         47998754                    


Q ss_pred             hhccCCCCHHHHHHHhhhhhhHHhhccCCchhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 020779          185 FLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLM  264 (321)
Q Consensus       185 ~l~~~~~t~eel~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Ra~Hv~tE~~RV~~~~~aL~~~d~~~~~~~~lG~LM  264 (321)
                               +++.+..+...+                  ..+++||+|||+||.||.+++++|+++|     +++||+||
T Consensus        49 ---------~~l~~~~~~l~d------------------~~~~rRa~Hvv~En~Rv~~a~~al~~~d-----~~~~G~lm   96 (183)
T d1piea2          49 ---------EEFDANTDLIGD------------------ETLIKRARHAVYENNRTKIAQKAFVAGN-----LTKFGELL   96 (183)
T ss_dssp             ---------HHHHHTGGGTCC------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHH
T ss_pred             ---------HHHHHHHhhcCC------------------HHHHHHHHHHHHHHHHHHHhhhhhhhcc-----HHHHHHHH
Confidence                     344433321111                  2578999999999999999999999999     99999999


Q ss_pred             HHhhhhhhhhcCCCCHHhH-HHHHHHHhcc
Q 020779          265 NDSHHSCSVLYECRYMHDC-AFHIFLHFFV  293 (321)
Q Consensus       265 n~SH~Slr~~ye~ScpEl~-~~~~~~~~~~  293 (321)
                      ++||.|++++|+|||||+| +++++++..+
T Consensus        97 ~~Sh~sl~~~~evs~~elD~Lv~~a~~~~G  126 (183)
T d1piea2          97 NASHASLKDDYEVTGLELDTLAETAQKQAG  126 (183)
T ss_dssp             HHHHHHHHHTSCCCCHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHhCC
Confidence            9999999999999999975 7788876543
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure