Citrus Sinensis ID: 020798

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MSSDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEKE
Secondary Structure (PSIPRED)
ccccccEEEEEccccccccccccccEEEEEEcccccEEEEEcccccEEEEcccccccccccccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEEEEcccccEEEEccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEccccccEEEEEEcccccEEEEEEccEccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccc
Coil and Loop (DISEMBL)
mssdqslesfrpytlTQTLNGHLRAISsvkfshdgrllasssadkTLLTYSLssisnsdstppsplqkftgheqgvsdlvfssdsrflvsasddktirlwdvptATCLKtlightnyvfcvnfnpqsnmivsgafdetvriwdvktgkclkvlpahsdpvtavdfnrdgtmivTSSYDGLCRIWDASTGHCMktliddenppvsfvkfspngkfiLVGTLDNTLrlwnystgkilktytghtnskycisstfsvtngkyivsgSEDSCVYLWELQSRKVVQKLeghtdpvisvashpteniiasgaldndrtvKIWTQEKE
Flexible Loop (DISEMBL)
mssdqslesfRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVsasddktirlwdVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKclkvlpahsdpvtavdfnrdGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDpvisvashpteniiasgaldndrtVKIWTQEKE
Low Complexity Region (SEG)
MSSDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKtlltyslssisnsdstppspLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEKE
Disordered region (IsUnstruct)
************YTLTQTLNGHLRAISSVKF***********************************************LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW*****
Disordered Region (DISOPRED)
MSSDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK*
Disordered Region (DISEMBL)
*********FRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLS*************QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEKE
Disordered Region (DISPRO)
**SDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	321	2.2.26 [Sep-21-2011]
Q498M4	334	WD repeat-containing prot	yes	no	0.928	0.892	0.665	1e-121
P61965	334	WD repeat-containing prot	yes	no	0.928	0.892	0.665	1e-121
P61964	334	WD repeat-containing prot	yes	no	0.928	0.892	0.665	1e-121
Q2KIG2	334	WD repeat-containing prot	yes	no	0.928	0.892	0.665	1e-121
Q5M786	334	WD repeat-containing prot	yes	no	0.928	0.892	0.668	1e-121
Q9V3J8	361	Protein will die slowly O	yes	no	0.931	0.828	0.654	1e-119
Q86VZ2	330	WD repeat-containing prot	no	no	0.922	0.896	0.638	1e-115
Q5RE95	330	WD repeat-containing prot	yes	no	0.922	0.896	0.634	1e-114
Q4V8C4	328	WD repeat-containing prot	no	no	0.968	0.948	0.585	1e-109
Q9D7H2	328	WD repeat-containing prot	no	no	0.931	0.911	0.599	1e-109

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/308 (66%), Positives = 249/308 (80%), Gaps = 10/308 (3%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQK-FTG 71
           Y L  TL GH +A+SSVKFS +G  LASSSADK +  +                +K  +G
Sbjct: 35  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---------GKFEKTISG 85

Query: 72  HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV 131
           H+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IV
Sbjct: 86  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145

Query: 132 SGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC 191
           SG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205

Query: 192 MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
           +KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + 
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 265

Query: 252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR 311
           FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325

Query: 312 TVKIWTQE 319
           T+K+W  +
Sbjct: 326 TIKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.
Rattus norvegicus (taxid: 10116)

>sp|P61965|WDR5_MOUSE WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=1 SV=1

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/308 (66%), Positives = 249/308 (80%), Gaps = 10/308 (3%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQK-FTG 71
           Y L  TL GH +A+SSVKFS +G  LASSSADK +  +                +K  +G
Sbjct: 35  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---------GKFEKTISG 85

Query: 72  HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV 131
           H+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IV
Sbjct: 86  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145

Query: 132 SGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC 191
           SG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205

Query: 192 MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
           +KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + 
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 265

Query: 252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR 311
           FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325

Query: 312 TVKIWTQE 319
           T+K+W  +
Sbjct: 326 TIKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Mus musculus (taxid: 10090)

>sp|P61964|WDR5_HUMAN WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/308 (66%), Positives = 249/308 (80%), Gaps = 10/308 (3%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQK-FTG 71
           Y L  TL GH +A+SSVKFS +G  LASSSADK +  +                +K  +G
Sbjct: 35  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---------GKFEKTISG 85

Query: 72  HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV 131
           H+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IV
Sbjct: 86  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145

Query: 132 SGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC 191
           SG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205

Query: 192 MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
           +KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + 
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 265

Query: 252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR 311
           FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325

Query: 312 TVKIWTQE 319
           T+K+W  +
Sbjct: 326 TIKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Homo sapiens (taxid: 9606)

>sp|Q2KIG2|WDR5_BOVIN WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/308 (66%), Positives = 249/308 (80%), Gaps = 10/308 (3%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQK-FTG 71
           Y L  TL GH +A+SSVKFS +G  LASSSADK +  +                +K  +G
Sbjct: 35  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---------GKFEKTISG 85

Query: 72  HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV 131
           H+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IV
Sbjct: 86  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145

Query: 132 SGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC 191
           SG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205

Query: 192 MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
           +KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + 
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 265

Query: 252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR 311
           FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325

Query: 312 TVKIWTQE 319
           T+K+W  +
Sbjct: 326 TIKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Bos taurus (taxid: 9913)

>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1

 Score =  435 bits (1118), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/308 (66%), Positives = 249/308 (80%), Gaps = 10/308 (3%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQK-FTG 71
           YTL  TL GH +A+SSVKFS +G  LASSSADK +  +                +K  +G
Sbjct: 35  YTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---------GKFEKTISG 85

Query: 72  HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV 131
           H+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IV
Sbjct: 86  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145

Query: 132 SGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC 191
           SG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205

Query: 192 MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
           +KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYT H N KYCI + 
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTCHKNEKYCIFAN 265

Query: 252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR 311
           FSVT GK+IVSGSED+ VY+W LQ+++VVQKL+GHTD VIS A HPTENIIAS AL+ND+
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIASAALENDK 325

Query: 312 TVKIWTQE 319
           T+K+W  +
Sbjct: 326 TIKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Xenopus tropicalis (taxid: 8364)

>sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1

 Score =  427 bits (1099), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/307 (65%), Positives = 247/307 (80%), Gaps = 8/307 (2%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH 72
           YTL  TL GH +A+S+VKFS +G  LASSSADK +  +                +  +GH
Sbjct: 62  YTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 113

Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDSR LVS SDDKT+++W++ T   LKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 114 KLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVS 173

Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDV+TGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 174 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 233

Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 234 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 293

Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQS++VVQKL+GHTD V+  A HPTENIIAS AL+ND+T
Sbjct: 294 SVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKT 353

Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 354 IKLWKSD 360

Essential for viability.

Drosophila melanogaster (taxid: 7227)

>sp|Q86VZ2|WDR5B_HUMAN WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1

 Score =  414 bits (1064), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/304 (63%), Positives = 241/304 (79%), Gaps = 8/304 (2%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH 72
           Y L  TL GH  A+SSVKFS +G  LASSSAD+ ++ +         +      +   GH
Sbjct: 31  YALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWG--------AYDGKYEKTLYGH 82

Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
              +SD+ +SSDS  LVSASDDKT++LWDV +  CLKTL GH+NYVFC NFNP SN+I+S
Sbjct: 83  NLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIIS 142

Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDETV+IW+VKTGKCLK L AHSDPV+AV FN  G++IV+ SYDGLCRIWDA++G C+
Sbjct: 143 GSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCL 202

Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTL+DD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS G+ LKTYTGH N KYCI + F
Sbjct: 203 KTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANF 262

Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTEN+IAS AL+ND+T
Sbjct: 263 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKT 322

Query: 313 VKIW 316
           +K+W
Sbjct: 323 IKLW 326

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5RE95|WDR5B_PONAB WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1

 Score =  413 bits (1061), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/304 (63%), Positives = 241/304 (79%), Gaps = 8/304 (2%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH 72
           Y L  TL GH  A+SSVKFS +G  LASSSAD+ ++ +         +      +   GH
Sbjct: 31  YALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWG--------AYDGKYERTLYGH 82

Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
              +SD+ +SSDS  LVSASDDKT++LWD+ +  CLKTL GH+NYVFC NFNP SN+I+S
Sbjct: 83  NLEISDVAWSSDSSRLVSASDDKTLKLWDMRSGKCLKTLKGHSNYVFCCNFNPPSNLIIS 142

Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDETV+IW+VKTGKCLK L AHSDPV+AV FN  G++IV+ SYDGLCRIWDA++G C+
Sbjct: 143 GSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCL 202

Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTL+DD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS G+ LKTYTGH N KYCI + F
Sbjct: 203 KTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANF 262

Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTEN+IAS AL+ND+T
Sbjct: 263 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKT 322

Query: 313 VKIW 316
           +K+W
Sbjct: 323 IKLW 326

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q4V8C4|WDR5B_RAT WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/321 (58%), Positives = 248/321 (77%), Gaps = 10/321 (3%)

Query: 1   MSSDQSLESFRP--YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNS 58
           +S+ Q +E  +   Y L  TL GH  AISSVKFS +G  LASS+AD  ++ +        
Sbjct: 15  LSAPQRVEEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWG------- 67

Query: 59  DSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYV 118
            +      +   GH   +SD+ +SSDS  LVSASDDKT++LWDV +  CLKTL GH+++V
Sbjct: 68  -AYDGKCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFV 126

Query: 119 FCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD 178
           FC +FNP SN+IVSG+FDE+V+IW+VKTGKCLK L AHSDP++AV F+ +G++IV+ SYD
Sbjct: 127 FCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIVSGSYD 186

Query: 179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY 238
           GLCRIWDA++G C++TL D+ NPPVSFVKFSPNGK+IL  TLD+TL+LW+YS G+ LKTY
Sbjct: 187 GLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDSTLKLWDYSRGRCLKTY 246

Query: 239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT 298
           TGH N KYCI ++FSVT  K++VSGSED+ VY+W LQ++++VQ+L+GHTD VIS A HPT
Sbjct: 247 TGHKNEKYCIFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPT 306

Query: 299 ENIIASGALDNDRTVKIWTQE 319
           ENIIAS AL+ND+T+KIW+ +
Sbjct: 307 ENIIASAALENDKTIKIWSSD 327

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q9D7H2|WDR5B_MOUSE WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/307 (59%), Positives = 242/307 (78%), Gaps = 8/307 (2%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH 72
           Y L  TL GH  AISSVKFS +G  LASS+AD  ++ +      N   T         GH
Sbjct: 29  YALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYD-GNCKKT-------LYGH 80

Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
              +SD+ +SSDS  LVSASDDKT+++WD+ +  CLKTL GH+++VFC +FNP SN+IVS
Sbjct: 81  SLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVS 140

Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+V+IW+VKTGKCLK L AHSDP++AV+FN +G++IV+ SYDGLCRIWDA++G C+
Sbjct: 141 GSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCL 200

Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           +TL D+ NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS G+ LKTYTGH N KYC+ ++F
Sbjct: 201 RTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASF 260

Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT  K++VSGSED+ VY+W LQ++++VQ+L+GHTD VIS A HPT+NIIAS AL+ND+T
Sbjct: 261 SVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKT 320

Query: 313 VKIWTQE 319
           +K+W+ +
Sbjct: 321 IKVWSSD 327

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
356521875	329	PREDICTED: WD repeat-containing protein	0.978	0.954	0.813	1e-152
224084484	317	hypothetical protein POPTRDRAFT_760587 [	0.968	0.981	0.830	1e-150
357478741	326	WD repeat-containing protein [Medicago t	0.975	0.960	0.802	1e-150
356563962	314	PREDICTED: WD repeat-containing protein	0.962	0.984	0.812	1e-149
449451353	318	PREDICTED: WD repeat-containing protein	0.975	0.984	0.802	1e-149
255576029	322	WD-repeat protein, putative [Ricinus com	0.987	0.984	0.820	1e-146
359480530	313	PREDICTED: WD repeat-containing protein	0.975	1.0	0.778	1e-144
297816196	317	transducin family protein [Arabidopsis l	0.959	0.971	0.744	1e-141
15229187	317	WD40 domain-containing protein [Arabidop	0.959	0.971	0.750	1e-140
116782369	314	unknown [Picea sitchensis]	0.953	0.974	0.742	1e-137

>gi|356521875|ref|XP_003529576.1| PREDICTED: WD repeat-containing protein 5-like [Glycine max]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/316 (81%), Positives = 290/316 (91%), Gaps = 2/316 (0%)

Query: 8   ESFRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLS-SISNSDSTPPSP 65
           +S +P Y L+QTL+GH RAIS+VKFS +GRLLASS+ADKTL TY  + S S+SDS   SP
Sbjct: 14  DSMKPNYILSQTLSGHKRAISAVKFSSNGRLLASSAADKTLRTYGFTNSDSDSDSLTLSP 73

Query: 66  LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
           +Q++ GHEQGVSDL FSSDSRFLVSASDDKT+RLWDVPT + +KTL GHTNYVFCVNFNP
Sbjct: 74  MQEYEGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVPTGSLIKTLHGHTNYVFCVNFNP 133

Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
           QSN+IVSG+FDETVR+WDVK+GKCLKVLPAHSDPVTAVDFNRDG++IV+SSYDGLCRIWD
Sbjct: 134 QSNIIVSGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWD 193

Query: 186 ASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK 245
           ASTGHCMKTLIDDENPPVSFVKFSPN KFILVGTLDNTLRLWNYSTGK LKTYTGH NSK
Sbjct: 194 ASTGHCMKTLIDDENPPVSFVKFSPNAKFILVGTLDNTLRLWNYSTGKFLKTYTGHVNSK 253

Query: 246 YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG 305
           YCISSTFS+TNGKYIV GSED+C+YLW+LQSRK+VQKLEGH+D V+SV+ HPTEN+IASG
Sbjct: 254 YCISSTFSITNGKYIVGGSEDNCIYLWDLQSRKIVQKLEGHSDAVVSVSCHPTENMIASG 313

Query: 306 ALDNDRTVKIWTQEKE 321
           AL ND TVKIWTQ+K+
Sbjct: 314 ALGNDNTVKIWTQQKD 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084484|ref|XP_002307312.1| hypothetical protein POPTRDRAFT_760587 [Populus trichocarpa] gi|222856761|gb|EEE94308.1| hypothetical protein POPTRDRAFT_760587 [Populus trichocarpa]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/312 (83%), Positives = 282/312 (90%), Gaps = 1/312 (0%)

Query: 8   ESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQ 67
           ES++PYTLTQTL GH   ISSVKFS DGRLL SSSADKTL TYS+S +SN  ++P + L 
Sbjct: 6   ESYKPYTLTQTLTGHKSPISSVKFSADGRLLGSSSADKTLRTYSIS-LSNPPTSPITHLH 64

Query: 68  KFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS 127
            F GHEQGVSDL FSSDSRF+VSASDDKT+RLWDV T   +KTL GHTNYVFCVNFNPQS
Sbjct: 65  DFHGHEQGVSDLAFSSDSRFIVSASDDKTLRLWDVTTGHTIKTLHGHTNYVFCVNFNPQS 124

Query: 128 NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS 187
           NMIVSG+FDETVRIWDVK+GKCLKVLPAHSDPVTAVDFNR+G++IV+SSYDGLCRIWDA 
Sbjct: 125 NMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTAVDFNREGSLIVSSSYDGLCRIWDAG 184

Query: 188 TGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYC 247
           TGHC+KTLIDDENPPVSFVKFSPNGKFILVGTLDN LRLWN+STGK LKTYTGH N+K+C
Sbjct: 185 TGHCIKTLIDDENPPVSFVKFSPNGKFILVGTLDNNLRLWNFSTGKFLKTYTGHVNTKFC 244

Query: 248 ISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGAL 307
           IS TFSVTNGKYIV GSEDSCVYLWELQSRK+VQKLEGHTD VISVA HPT+NIIASGAL
Sbjct: 245 ISPTFSVTNGKYIVGGSEDSCVYLWELQSRKIVQKLEGHTDTVISVACHPTQNIIASGAL 304

Query: 308 DNDRTVKIWTQE 319
            ND+TVKIWTQE
Sbjct: 305 GNDKTVKIWTQE 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478741|ref|XP_003609656.1| WD repeat-containing protein [Medicago truncatula] gi|355510711|gb|AES91853.1| WD repeat-containing protein [Medicago truncatula]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/314 (80%), Positives = 288/314 (91%), Gaps = 1/314 (0%)

Query: 9   SFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLS-SISNSDSTPPSPLQ 67
           +++PYTL+QTL GH RAIS+VKFS +GRLLASSSADKTL TY  + S S+S+S   SP+Q
Sbjct: 13  NYKPYTLSQTLTGHKRAISAVKFSSNGRLLASSSADKTLRTYGFTNSDSDSNSLTLSPMQ 72

Query: 68  KFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS 127
           ++ GH+ GVSDL FSSDSR+LVSASDDKTIRLWDVPT + +KTL GHTNYVFCVNFNPQS
Sbjct: 73  QYEGHQHGVSDLAFSSDSRYLVSASDDKTIRLWDVPTGSLVKTLHGHTNYVFCVNFNPQS 132

Query: 128 NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS 187
           N+IVSG+FDETVR+WDVK+GKCLKVLPAHSDPVTAVDFNRDGT+IV+SSYDGLCRIWDAS
Sbjct: 133 NVIVSGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVDFNRDGTLIVSSSYDGLCRIWDAS 192

Query: 188 TGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYC 247
           TGHC+KTLIDDENPPVS+VKFSPN KFILVGTLDN LRLWNYSTGK LKTYTGH NSKYC
Sbjct: 193 TGHCIKTLIDDENPPVSYVKFSPNAKFILVGTLDNNLRLWNYSTGKFLKTYTGHVNSKYC 252

Query: 248 ISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGAL 307
           ISS+FS+TNGKY+V GSED+C+YLW LQSRK+VQKLEGHTD V+SV+ HPTEN+IASGAL
Sbjct: 253 ISSSFSITNGKYVVGGSEDNCIYLWGLQSRKIVQKLEGHTDSVVSVSCHPTENMIASGAL 312

Query: 308 DNDRTVKIWTQEKE 321
            ND+TVKIWTQ+K+
Sbjct: 313 GNDKTVKIWTQQKD 326

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563962|ref|XP_003550226.1| PREDICTED: WD repeat-containing protein 5-like [Glycine max]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/310 (81%), Positives = 285/310 (91%), Gaps = 1/310 (0%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLS-SISNSDSTPPSPLQKFTG 71
           YTL+QTL+GH RAIS+VKFS +GRLLASS+ADKTL TY  + S S+S+S   SP+Q++ G
Sbjct: 5   YTLSQTLSGHKRAISAVKFSSNGRLLASSAADKTLRTYGFTNSDSDSESLTLSPMQQYEG 64

Query: 72  HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV 131
           HEQGVSDL FSSDSRFLVSASDDKT+RLWDVPT + +KTL GHTNYVFCVNFNPQSN+IV
Sbjct: 65  HEQGVSDLAFSSDSRFLVSASDDKTLRLWDVPTGSLIKTLHGHTNYVFCVNFNPQSNIIV 124

Query: 132 SGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC 191
           SG+FDETVR+WDVK+GKCLKVLPAHSDPVTAVDFNRDG++IV+SSYDGLCRIWDASTGHC
Sbjct: 125 SGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDASTGHC 184

Query: 192 MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
           MKTLIDD+NPPVSFVKFSPN KFILVGTLDNTLRLWNYSTGK LKTYTGH NSKYCISST
Sbjct: 185 MKTLIDDDNPPVSFVKFSPNAKFILVGTLDNTLRLWNYSTGKFLKTYTGHVNSKYCISST 244

Query: 252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR 311
           FS TNGKYIV GSE++ +YLW+LQSRK+VQKLEGH+D V+SV+ HPTEN+IASGAL ND 
Sbjct: 245 FSTTNGKYIVGGSEENYIYLWDLQSRKIVQKLEGHSDAVVSVSCHPTENMIASGALGNDN 304

Query: 312 TVKIWTQEKE 321
           TVKIWTQ+K+
Sbjct: 305 TVKIWTQQKD 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451353|ref|XP_004143426.1| PREDICTED: WD repeat-containing protein 5-like [Cucumis sativus] gi|449531922|ref|XP_004172934.1| PREDICTED: WD repeat-containing protein 5-like [Cucumis sativus]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/319 (80%), Positives = 286/319 (89%), Gaps = 6/319 (1%)

Query: 1   MSSDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDS 60
           +S     +S++PYTL+QTL  H R ISSVKFS DGRLL SSSADKTL TYS    SNS  
Sbjct: 2   LSEPSQTDSYKPYTLSQTLTSHKRCISSVKFSADGRLLGSSSADKTLRTYS---CSNSTV 58

Query: 61  TPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFC 120
           TP   +Q+F GHEQGVSDL FSSDSRFLVSASDDKT+RLWDV T + +KTL GHTNYVFC
Sbjct: 59  TP---VQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSTGSLVKTLNGHTNYVFC 115

Query: 121 VNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGL 180
           VNFNPQSNMIVSG+FDETVRIWDVK+GKCLKVLPAHSDPVT VDFNRDG++IV+SSYDGL
Sbjct: 116 VNFNPQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGL 175

Query: 181 CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG 240
           CRIWDASTGHC+KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN+STGK LKTYTG
Sbjct: 176 CRIWDASTGHCVKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNFSTGKFLKTYTG 235

Query: 241 HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN 300
           HTNSK+CISSTFSVTNG+YI SGSED+CVYLWELQ+R++VQKLEGH+D VISV+ HP+EN
Sbjct: 236 HTNSKFCISSTFSVTNGRYIASGSEDNCVYLWELQTRQIVQKLEGHSDTVISVSCHPSEN 295

Query: 301 IIASGALDNDRTVKIWTQE 319
           +IASGA+ ND+TVKIWTQ+
Sbjct: 296 MIASGAVGNDKTVKIWTQK 314

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576029|ref|XP_002528910.1| WD-repeat protein, putative [Ricinus communis] gi|223531664|gb|EEF33490.1| WD-repeat protein, putative [Ricinus communis]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/318 (82%), Positives = 288/318 (90%), Gaps = 1/318 (0%)

Query: 4   DQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPP 63
           D +++S++PY LTQTL GH RAISS+KFS DGR LASSSADKTL TYSLS  SN  ++P 
Sbjct: 6   DTAIDSYKPYNLTQTLTGHKRAISSLKFSSDGRFLASSSADKTLKTYSLSP-SNPPTSPL 64

Query: 64  SPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNF 123
           +PL +F GHEQGVSD+ FSSDSRFLVSASDDKTIRLWDV T + +KTL GHTNYVFCVNF
Sbjct: 65  TPLHEFHGHEQGVSDVSFSSDSRFLVSASDDKTIRLWDVTTGSQIKTLNGHTNYVFCVNF 124

Query: 124 NPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRI 183
           NPQSNMIVSG+FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG++IV+SSYDGLCRI
Sbjct: 125 NPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRI 184

Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
           WD+ TGHC+KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN STGK LKTYTGH N
Sbjct: 185 WDSGTGHCVKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNSSTGKFLKTYTGHVN 244

Query: 244 SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA 303
           SK+C+SS FS+TNGKYIVSGSED+CVYLWELQ+RKVVQKLEGHTD VISVA HPT+N+IA
Sbjct: 245 SKFCLSSAFSITNGKYIVSGSEDNCVYLWELQTRKVVQKLEGHTDTVISVACHPTQNMIA 304

Query: 304 SGALDNDRTVKIWTQEKE 321
           SGAL  D TV+IWTQ KE
Sbjct: 305 SGALGKDNTVRIWTQGKE 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480530|ref|XP_003632482.1| PREDICTED: WD repeat-containing protein 5-like [Vitis vinifera] gi|297735857|emb|CBI18611.3| unnamed protein product [Vitis vinifera]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/321 (77%), Positives = 280/321 (87%), Gaps = 8/321 (2%)

Query: 1   MSSDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDS 60
           M+SD S E   PY L QTL  H RA+S+VKFS DG LL SSSADKTL T+S S       
Sbjct: 1   MASDPS-EFITPYKLKQTLTAHKRAVSAVKFSSDGLLLGSSSADKTLRTWSTSG------ 53

Query: 61  TPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFC 120
              S LQ+F GH+QG+SDL FSSDSR + SASDDKT+RLWDV T + +KTL GHTN+VFC
Sbjct: 54  -DFSTLQEFHGHDQGISDLAFSSDSRHVCSASDDKTVRLWDVETGSLIKTLQGHTNHVFC 112

Query: 121 VNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGL 180
           VNFNPQSNMIVSG+FDETVR+WDVKTGKCLKVLPAHSDPVTA +FNRDG++IV+SSYDGL
Sbjct: 113 VNFNPQSNMIVSGSFDETVRVWDVKTGKCLKVLPAHSDPVTAANFNRDGSLIVSSSYDGL 172

Query: 181 CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG 240
           CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN+STGK LKTYTG
Sbjct: 173 CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNFSTGKFLKTYTG 232

Query: 241 HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN 300
           H NSKYCISSTFSVTNGKYIV GSED+CVYLWELQ+RK+VQKLEGHTD VISV+ HP++N
Sbjct: 233 HVNSKYCISSTFSVTNGKYIVGGSEDNCVYLWELQTRKIVQKLEGHTDTVISVSCHPSQN 292

Query: 301 IIASGALDNDRTVKIWTQEKE 321
           +IASGAL +D+TVKIWTQE++
Sbjct: 293 MIASGALGSDKTVKIWTQERD 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816196|ref|XP_002875981.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297321819|gb|EFH52240.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 233/313 (74%), Positives = 278/313 (88%), Gaps = 5/313 (1%)

Query: 9   SFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQK 68
           SF PY  +QTL  H+RA+SSVKFS DGRLLAS+SADKT+ TY+   ++  + T   P+++
Sbjct: 10  SFTPYIHSQTLTSHIRAVSSVKFSSDGRLLASASADKTIRTYT---VNTENETIAEPVRE 66

Query: 69  FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN 128
           FTGHE G+SD+ FSSD+RF+VSASDDKT++LWDV T + +KTLIGHTNY FCVNFNPQSN
Sbjct: 67  FTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSN 126

Query: 129 MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST 188
           MIVSG+FDETVRIWDV TGKCLKVLPAHSDPVTAVDFNRDG++IV+SSYDGLCRIWD+ T
Sbjct: 127 MIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGT 186

Query: 189 GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI 248
           GHC+KTLIDDENPPVSFV+FSPNGKFILVGTLDNTLRLWN ++ K LKTYTGH N++YCI
Sbjct: 187 GHCIKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNIASAKFLKTYTGHVNAQYCI 246

Query: 249 SSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALD 308
           SS FSVTNGK IVSGSED+CVY+WEL SRK++QKLEGHT+ +++VA HPTEN+IASG+L 
Sbjct: 247 SSAFSVTNGKRIVSGSEDNCVYMWELNSRKLLQKLEGHTETIMNVACHPTENLIASGSL- 305

Query: 309 NDRTVKIWTQEKE 321
            D++V+IWTQ+KE
Sbjct: 306 -DKSVRIWTQKKE 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229187|ref|NP_190535.1| WD40 domain-containing protein [Arabidopsis thaliana] gi|6723411|emb|CAB66904.1| putative WD-40 repeat-protein [Arabidopsis thaliana] gi|195604746|gb|ACG24203.1| hypothetical protein [Zea mays] gi|332645052|gb|AEE78573.1| WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/313 (75%), Positives = 280/313 (89%), Gaps = 5/313 (1%)

Query: 9   SFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQK 68
           SF PY  +QTL  H RA+SSVKFS DGRLLAS+SADKT+ TY++++I++  +    P+Q+
Sbjct: 10  SFTPYVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIA---EPVQE 66

Query: 69  FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN 128
           FTGHE G+SD+ FSSD+RF+VSASDDKT++LWDV T + +KTLIGHTNY FCVNFNPQSN
Sbjct: 67  FTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSN 126

Query: 129 MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST 188
           MIVSG+FDETVRIWDV TGKCLKVLPAHSDPVTAVDFNRDG++IV+SSYDGLCRIWD+ T
Sbjct: 127 MIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGT 186

Query: 189 GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI 248
           GHC+KTLIDDENPPVSFV+FSPNGKFILVGTLDNTLRLWN S+ K LKTYTGH N++YCI
Sbjct: 187 GHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCI 246

Query: 249 SSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALD 308
           SS FSVTNGK IVSGSED+CV++WEL S+K++QKLEGHT+ V++VA HPTEN+IASG+L 
Sbjct: 247 SSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSL- 305

Query: 309 NDRTVKIWTQEKE 321
            D+TV+IWTQ+KE
Sbjct: 306 -DKTVRIWTQKKE 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116782369|gb|ABK22482.1| unknown [Picea sitchensis]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/314 (74%), Positives = 269/314 (85%), Gaps = 8/314 (2%)

Query: 6   SLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSP 65
           S  SF+PY L   L GH RA+SSVKFS DG+LL S+SADK++  +S       D +    
Sbjct: 8   SGNSFKPYKLKHILTGHKRAVSSVKFSADGKLLGSASADKSVRIWSAG-----DGSAKRE 62

Query: 66  LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
           LQ   GH +GVSD+ +SSDS ++ SASDDKT+R+WDV T  C+KTL GHTNYVFCVNFNP
Sbjct: 63  LQ---GHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNP 119

Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
           QSN+IVSG+FDETVRIWDV+TGKCLKVLPAHSDPVTAV FNRDG++IV+SSYDGLCRIWD
Sbjct: 120 QSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWD 179

Query: 186 ASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK 245
           ++TGHC+KTLIDDENPPVSFV FSPNGKFIL GTLDNTLRLWN++TGK LKTYTGH NSK
Sbjct: 180 SATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSK 239

Query: 246 YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG 305
           YCISSTFSVTNGKYIVSGSED+CVYLW+LQ+R +VQKLEGHTD VISV+ HPTEN IASG
Sbjct: 240 YCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASG 299

Query: 306 ALDNDRTVKIWTQE 319
           AL+ND+T++IW QE
Sbjct: 300 ALENDKTLRIWVQE 313

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2097435	317	WDR5a "AT3G49660" [Arabidopsis	0.959	0.971	0.734	4.8e-126
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.965	0.928	0.65	5.9e-112
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.965	0.928	0.65	5.9e-112
MGI|MGI:2155884	334	Wdr5 "WD repeat domain 5" [Mus	0.965	0.928	0.65	5.9e-112
RGD|1305159	334	Wdr5 "WD repeat domain 5" [Rat	0.965	0.928	0.65	5.9e-112
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.931	0.970	0.664	7.6e-112
UNIPROTKB|F1S034	334	WDR5 "Uncharacterized protein"	0.931	0.895	0.664	7.6e-112
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.965	0.928	0.653	7.6e-112
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.965	0.858	0.642	4.2e-111
TAIR|locus:2140215	333	WDR5b "AT4G02730" [Arabidopsis	0.940	0.906	0.594	4.2e-102

TAIR|locus:2097435 WDR5a "AT3G49660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
 Identities = 230/313 (73%), Positives = 267/313 (85%)

Query:     9 SFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQK 68
             SF PY  +QTL  H RA+SSVKFS DGRLLAS+SADK                    +Q+
Sbjct:    10 SFTPYVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEP---VQE 66

Query:    69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN 128
             FTGHE G+SD+ FSSD+RF+VSASDDKT++LWDV T + +KTLIGHTNY FCVNFNPQSN
Sbjct:    67 FTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSN 126

Query:   129 MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST 188
             MIVSG+FDETVRIWDV TGKCLKVLPAHSDPVTAVDFNRDG++IV+SSYDGLCRIWD+ T
Sbjct:   127 MIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGT 186

Query:   189 GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI 248
             GHC+KTLIDDENPPVSFV+FSPNGKFILVGTLDNTLRLWN S+ K LKTYTGH N++YCI
Sbjct:   187 GHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCI 246

Query:   249 SSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALD 308
             SS FSVTNGK IVSGSED+CV++WEL S+K++QKLEGHT+ V++VA HPTEN+IASG+LD
Sbjct:   247 SSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLD 306

Query:   309 NDRTVKIWTQEKE 321
               +TV+IWTQ+KE
Sbjct:   307 --KTVRIWTQKKE 317

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0042393 "histone binding" evidence=IDA

GO:0048188 "Set1C/COMPASS complex" evidence=IPI

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 208/320 (65%), Positives = 253/320 (79%)

Query:     2 SSDQSLES-FRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXX 59
             S+ QS  +  +P Y L  TL GH +A+SSVKFS +G  LASSSADK              
Sbjct:    22 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE- 80

Query:    60 XXXXXXLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVF 119
                    +  +GH+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVF
Sbjct:    81 -------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133

Query:   120 CVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG 179
             C NFNPQSN+IVSG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDG
Sbjct:   134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193

Query:   180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
             LCRIWD ++G C+KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYT
Sbjct:   194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253

Query:   240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE 299
             GH N KYCI + FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTE
Sbjct:   254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313

Query:   300 NIIASGALDNDRTVKIWTQE 319
             NIIAS AL+ND+T+K+W  +
Sbjct:   314 NIIASAALENDKTIKLWKSD 333

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 208/320 (65%), Positives = 253/320 (79%)

Query:     2 SSDQSLES-FRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXX 59
             S+ QS  +  +P Y L  TL GH +A+SSVKFS +G  LASSSADK              
Sbjct:    22 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE- 80

Query:    60 XXXXXXLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVF 119
                    +  +GH+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVF
Sbjct:    81 -------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133

Query:   120 CVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG 179
             C NFNPQSN+IVSG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDG
Sbjct:   134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193

Query:   180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
             LCRIWD ++G C+KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYT
Sbjct:   194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253

Query:   240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE 299
             GH N KYCI + FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTE
Sbjct:   254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313

Query:   300 NIIASGALDNDRTVKIWTQE 319
             NIIAS AL+ND+T+K+W  +
Sbjct:   314 NIIASAALENDKTIKLWKSD 333

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)]

 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 208/320 (65%), Positives = 253/320 (79%)

Query:     2 SSDQSLES-FRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXX 59
             S+ QS  +  +P Y L  TL GH +A+SSVKFS +G  LASSSADK              
Sbjct:    22 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE- 80

Query:    60 XXXXXXLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVF 119
                    +  +GH+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVF
Sbjct:    81 -------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133

Query:   120 CVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG 179
             C NFNPQSN+IVSG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDG
Sbjct:   134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193

Query:   180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
             LCRIWD ++G C+KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYT
Sbjct:   194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253

Query:   240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE 299
             GH N KYCI + FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTE
Sbjct:   254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313

Query:   300 NIIASGALDNDRTVKIWTQE 319
             NIIAS AL+ND+T+K+W  +
Sbjct:   314 NIIASAALENDKTIKLWKSD 333

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0001501 "skeletal system development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1305159 Wdr5 "WD repeat domain 5" [Rattus norvegicus (taxid:10116)]

 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 208/320 (65%), Positives = 253/320 (79%)

Query:     2 SSDQSLES-FRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXX 59
             S+ QS  +  +P Y L  TL GH +A+SSVKFS +G  LASSSADK              
Sbjct:    22 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE- 80

Query:    60 XXXXXXLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVF 119
                    +  +GH+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVF
Sbjct:    81 -------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133

Query:   120 CVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG 179
             C NFNPQSN+IVSG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDG
Sbjct:   134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193

Query:   180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
             LCRIWD ++G C+KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYT
Sbjct:   194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253

Query:   240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE 299
             GH N KYCI + FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTE
Sbjct:   254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313

Query:   300 NIIASGALDNDRTVKIWTQE 319
             NIIAS AL+ND+T+K+W  +
Sbjct:   314 NIIASAALENDKTIKLWKSD 333

GO:0000123 "histone acetyltransferase complex" evidence=ISO;ISS

GO:0001501 "skeletal system development" evidence=IEA;ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISO;ISS

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA;ISO

GO:0043966 "histone H3 acetylation" evidence=IEA;ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO;ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISO;ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISO;ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISO;ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISO;ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISO;ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISO;ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISO;ISS

GO:0071339 "MLL1 complex" evidence=ISO;ISS

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 204/307 (66%), Positives = 246/307 (80%)

Query:    13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
             Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct:     9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 60

Query:    73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
             + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct:    61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 120

Query:   133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
             G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct:   121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 180

Query:   193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
             KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct:   181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 240

Query:   253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
             SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct:   241 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 300

Query:   313 VKIWTQE 319
             +K+W  +
Sbjct:   301 IKLWKSD 307

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 204/307 (66%), Positives = 246/307 (80%)

Query:    13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
             Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 86

Query:    73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
             + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct:    87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query:   133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
             G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct:   147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

Query:   193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
             KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct:   207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266

Query:   253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
             SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct:   267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 326

Query:   313 VKIWTQE 319
             +K+W  +
Sbjct:   327 IKLWKSD 333

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 209/320 (65%), Positives = 254/320 (79%)

Query:     2 SSDQSLES-FRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXX 59
             S++QS  +  +P YTL  TL GH +A+SSVKFS +G  LASSSADK              
Sbjct:    22 SNNQSKPAPVKPNYTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE- 80

Query:    60 XXXXXXLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVF 119
                    +  +GH+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVF
Sbjct:    81 -------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133

Query:   120 CVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG 179
             C NFNPQSN+IVSG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDG
Sbjct:   134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193

Query:   180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
             LCRIWD ++G C+KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYT
Sbjct:   194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253

Query:   240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE 299
              H N KYCI + FSVT GK+IVSGSED+ VY+W LQ+++VVQKL+GHTD VIS A HPTE
Sbjct:   254 CHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTE 313

Query:   300 NIIASGALDNDRTVKIWTQE 319
             NIIAS AL+ND+T+K+W  +
Sbjct:   314 NIIASAALENDKTIKLWKSD 333

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 205/319 (64%), Positives = 253/319 (79%)

Query:     2 SSDQSLESFRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXX 60
             +S++S  S +P YTL  TL GH +A+S+VKFS +G  LASSSADK               
Sbjct:    50 ASNKSSLSVKPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFE-- 107

Query:    61 XXXXXLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFC 120
                   +  +GH+ G+SD+ +SSDSR LVS SDDKT+++W++ T   LKTL GH+NYVFC
Sbjct:   108 ------KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFC 161

Query:   121 VNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGL 180
              NFNPQSN+IVSG+FDE+VRIWDV+TGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGL
Sbjct:   162 CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 221

Query:   181 CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG 240
             CRIWD ++G C+KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTG
Sbjct:   222 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 281

Query:   241 HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN 300
             H N KYCI + FSVT GK+IVSGSED+ VY+W LQS++VVQKL+GHTD V+  A HPTEN
Sbjct:   282 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTEN 341

Query:   301 IIASGALDNDRTVKIWTQE 319
             IIAS AL+ND+T+K+W  +
Sbjct:   342 IIASAALENDKTIKLWKSD 360

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

TAIR|locus:2140215 WDR5b "AT4G02730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 185/311 (59%), Positives = 238/311 (76%)

Query:    10 FRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKF 69
             ++PY   +TL GH  AIS VKFS+DG LLAS+S DK                    + ++
Sbjct:    30 YKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSL--------IHRY 81

Query:    70 TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA-TCLKTLIGHTNYVFCVNFNPQSN 128
              GH  G+SDL +SSDS +  SASDD T+R+WD  +   CLK L GHTN+VFCVNFNP SN
Sbjct:    82 EGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSN 141

Query:   129 MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST 188
             +IVSG+FDET+RIW+VKTGKC++++ AHS P+++V FNRDG++IV++S+DG C+IWDA  
Sbjct:   142 LIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKE 201

Query:   189 GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI 248
             G C+KTLIDD++P VSF KFSPNGKFILV TLD+TL+L NY+TGK LK YTGHTN  +CI
Sbjct:   202 GTCLKTLIDDKSPAVSFAKFSPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCI 261

Query:   249 SSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALD 308
             +S FSVTNGKYIVSGSED+CVYLW+LQ+R ++Q+LEGHTD VISV+ HP +N I+S    
Sbjct:   262 TSAFSVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAVISVSCHPVQNEISSSGNH 321

Query:   309 NDRTVKIWTQE 319
              D+T++IW Q+
Sbjct:   322 LDKTIRIWKQD 332

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54KL5	WDR5_DICDI	No assigned EC number	0.6065	0.9221	0.8835	yes	no
P38123	SWD3_YEAST	No assigned EC number	0.3180	0.9190	0.9365	yes	no
Q9V3J8	WDS_DROME	No assigned EC number	0.6547	0.9314	0.8282	yes	no
Q5M786	WDR5_XENTR	No assigned EC number	0.6688	0.9283	0.8922	yes	no
Q17963	TG125_CAEEL	No assigned EC number	0.5953	0.9221	0.7872	yes	no
A8X8C6	TG125_CAEBR	No assigned EC number	0.5888	0.9221	0.8043	N/A	no
Q498M4	WDR5_RAT	No assigned EC number	0.6655	0.9283	0.8922	yes	no
P61964	WDR5_HUMAN	No assigned EC number	0.6655	0.9283	0.8922	yes	no
P61965	WDR5_MOUSE	No assigned EC number	0.6655	0.9283	0.8922	yes	no
Q5RE95	WDR5B_PONAB	No assigned EC number	0.6348	0.9221	0.8969	yes	no
Q2KIG2	WDR5_BOVIN	No assigned EC number	0.6655	0.9283	0.8922	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-94
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-74
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-51
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-39
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-39
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-37
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-35
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-22
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-15
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-11
smart00320	40	smart00320, WD40, WD40 repeats	8e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-09
smart00320	40	smart00320, WD40, WD40 repeats	1e-08
smart00320	40	smart00320, WD40, WD40 repeats	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-08
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	9e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
smart00320	40	smart00320, WD40, WD40 repeats	7e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
smart00320	40	smart00320, WD40, WD40 repeats	8e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-04
smart00320	40	smart00320, WD40, WD40 repeats	8e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
pfam13360	234	pfam13360, PQQ_2, PQQ-like domain	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  280 bits (719), Expect = 4e-94
 Identities = 125/302 (41%), Positives = 181/302 (59%), Gaps = 14/302 (4%)

Query: 15  LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQ 74
           L +TL GH   ++ V FS DG+LLA+ S D T+  +        D      L+   GH  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW--------DLETGELLRTLKGHTG 52

Query: 75  GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA 134
            V D+  S+D  +L S S DKTIRLWD+ T  C++TL GHT+YV  V F+P   ++ S +
Sbjct: 53  PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 135 FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKT 194
            D+T+++WDV+TGKCL  L  H+D V +V F+ DGT + +SS DG  ++WD  TG C+ T
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172

Query: 195 LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV 254
           L       V+ V FSP+G+ +L  + D T++LW+ STGK L T  GH N    ++  FS 
Sbjct: 173 L-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA--FS- 228

Query: 255 TNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVK 314
            +G  + SGSED  + +W+L++ + VQ L GHT+ V S+A  P    +ASG+ D   T++
Sbjct: 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG--TIR 286

Query: 315 IW 316
           IW
Sbjct: 287 IW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  230 bits (589), Expect = 2e-74
 Identities = 104/260 (40%), Positives = 155/260 (59%), Gaps = 12/260 (4%)

Query: 14  TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHE 73
            L +TL GH   +  V  S DG  LAS S+DKT+  + L +           ++  TGH 
Sbjct: 42  ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET--------GECVRTLTGHT 93

Query: 74  QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG 133
             VS + FS D R L S+S DKTI++WDV T  CL TL GHT++V  V F+P    + S 
Sbjct: 94  SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153

Query: 134 AFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK 193
           + D T+++WD++TGKC+  L  H+  V +V F+ DG  +++SS DG  ++WD STG C+ 
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213

Query: 194 TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFS 253
           TL   EN  V+ V FSP+G  +  G+ D T+R+W+  TG+ ++T +GHTNS   ++ +  
Sbjct: 214 TLRGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS-- 270

Query: 254 VTNGKYIVSGSEDSCVYLWE 273
             +GK + SGS D  + +W+
Sbjct: 271 -PDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  170 bits (432), Expect = 5e-51
 Identities = 68/177 (38%), Positives = 100/177 (56%), Gaps = 8/177 (4%)

Query: 9   SFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQK 68
                    TL GH   ++SV FS DG  +ASSS D T+  + L +           +  
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--------CVAT 172

Query: 69  FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN 128
            TGH   V+ + FS D   L+S+S D TI+LWD+ T  CL TL GH N V  V F+P   
Sbjct: 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY 232

Query: 129 MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
           ++ SG+ D T+R+WD++TG+C++ L  H++ VT++ ++ DG  + + S DG  RIWD
Sbjct: 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  143 bits (361), Expect = 3e-39
 Identities = 117/310 (37%), Positives = 175/310 (56%), Gaps = 19/310 (6%)

Query: 12  PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTG 71
           P  L +TL GH  +++S+ FS DG+LLAS S+          +I   D     PL    G
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD-------GTIKLWDLRTGKPLSTLAG 196

Query: 72  HEQGVSDLVFSSDSRF-LVSASDDKTIRLWDVPTATCLK-TLIGHTNYVFCVNFNPQSNM 129
           H   VS L FS D    + S S D TIRLWD+ T   L+ TL GH++ V    F+P  ++
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSL 255

Query: 130 IVSGAFDETVRIWDVKTGK-CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST 188
           + SG+ D T+R+WD+++    L+ L  HS  V +V F+ DG ++ + S DG  R+WD  T
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Query: 189 GHCMKTL-IDDENPPVSFVKFSPNGKFILVG-TLDNTLRLWNYSTGKILKTYTGHTNSKY 246
           G  + +L +     PVS + FSP+G  ++ G + D T+RLW+  TGK LKT  GH+N   
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VL 374

Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
            +S +    +G+ + SGS D  V LW+L +  +++ L+GHT  V S+   P    +ASG+
Sbjct: 375 SVSFSP---DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431

Query: 307 LDNDRTVKIW 316
            DN  T+++W
Sbjct: 432 SDN--TIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  142 bits (358), Expect = 7e-39
 Identities = 107/307 (34%), Positives = 166/307 (54%), Gaps = 14/307 (4%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH 72
            +L    +  +  ++      +  LLASSS D T+  + LS       TP   ++   GH
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS-------TPGKLIRTLEGH 154

Query: 73  EQGVSDLVFSSDSRFLVSASD-DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MI 130
            + V+ L FS D + L S S  D TI+LWD+ T   L TL GHT+ V  + F+P    +I
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214

Query: 131 VSGAFDETVRIWDVKTGKCLK-VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG 189
            SG+ D T+R+WD+ TGK L+  L  HSD V +  F+ DG+++ + S DG  R+WD  + 
Sbjct: 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSS 273

Query: 190 HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCIS 249
             +   +   +  V  V FSP+GK +  G+ D T+RLW+  TGK+L + T   +     S
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333

Query: 250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDN 309
            +FS      +  GS+D  + LW+L++ K ++ LEGH   V+SV+  P   +++SG    
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSG--ST 390

Query: 310 DRTVKIW 316
           D TV++W
Sbjct: 391 DGTVRLW 397

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  139 bits (349), Expect = 1e-37
 Identities = 104/322 (32%), Positives = 178/322 (55%), Gaps = 14/322 (4%)

Query: 1   MSSDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDS 60
           ++         P   +  L GH  +I+S+ FS DG LL S S+D T+  + L    N + 
Sbjct: 43  LALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDL---DNGEK 99

Query: 61  TPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT-CLKTLIGHTNYVF 119
              S           ++      +S  L S+S D T++LWD+ T    ++TL GH+  V 
Sbjct: 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVT 159

Query: 120 CVNFNPQSNMIVSGA-FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT-MIVTSSY 177
            + F+P   ++ SG+  D T+++WD++TGK L  L  H+DPV+++ F+ DG  +I + S 
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219

Query: 178 DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY-STGKILK 236
           DG  R+WD STG  +++ +   +  V    FSP+G  +  G+ D T+RLW+  S+  +L+
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278

Query: 237 TYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ--KLEGHTDPVISVA 294
           T +GH++S   ++ +    +GK + SGS D  V LW+L++ K++    L+GH  PV S++
Sbjct: 279 TLSGHSSSVLSVAFS---PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335

Query: 295 SHPTENIIASGALDNDRTVKIW 316
             P  +++ SG   +D T+++W
Sbjct: 336 FSPDGSLLVSGG-SDDGTIRLW 356

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  133 bits (335), Expect = 1e-35
 Identities = 105/273 (38%), Positives = 154/273 (56%), Gaps = 18/273 (6%)

Query: 9   SFRPYTLTQTLNGHLRAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQ 67
             R      TL GH   +SS+ FS DG  L+AS S+D T+  + LS       T      
Sbjct: 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-------TGKLLRS 236

Query: 68  KFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT-ATCLKTLIGHTNYVFCVNFNPQ 126
             +GH   V    FS D   L S S D TIRLWD+ + ++ L+TL GH++ V  V F+P 
Sbjct: 237 TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295

Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLP--AHSDPVTAVDFNRDGTMIVTS-SYDGLCRI 183
             ++ SG+ D TVR+WD++TGK L  L    H  PV+++ F+ DG+++V+  S DG  R+
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
           WD  TG  +KTL    N  V  V FSP+G+ +  G+ D T+RLW+ STG +L+   GHT+
Sbjct: 356 WDLRTGKPLKTLEGHSN--VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413

Query: 244 SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS 276
               +  +    +GK + SGS D+ + LW+L++
Sbjct: 414 RVTSLDFSP---DGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.8 bits (234), Expect = 9e-22
 Identities = 78/249 (31%), Positives = 134/249 (53%), Gaps = 16/249 (6%)

Query: 76  VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF 135
           +  L  S     L++   D  + L D+ +      L GH + +  + F+P   +++SG+ 
Sbjct: 30  LLSLGSSESGILLLALLSDSLVSLPDLSS----LLLRGHEDSITSIAFSPDGELLLSGSS 85

Query: 136 DETVRIWDVKTGKCL--KVLPAHSDPVTAVDF-NRDGTMIVT--SSYDGLCRIWDASTGH 190
           D T+++WD+  G+ L   +   H   V+ +   + DG  I+   SS DG  ++WD ST  
Sbjct: 86  DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145

Query: 191 CMKTLIDDENPPVSFVKFSPNGKFILVG-TLDNTLRLWNYSTGKILKTYTGHTNSKYCIS 249
            +   ++  +  V+ + FSP+GK +  G +LD T++LW+  TGK L T  GHT+    ++
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205

Query: 250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ-KLEGHTDPVISVASHPTENIIASGALD 308
             FS   G  I SGS D  + LW+L + K+++  L GH+D V+S  S P  +++ASG+ D
Sbjct: 206 --FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS-PDGSLLASGSSD 262

Query: 309 NDRTVKIWT 317
              T+++W 
Sbjct: 263 G--TIRLWD 269

Length = 466

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 75.3 bits (185), Expect = 4e-15
 Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 13/135 (9%)

Query: 60  STPPSPLQKFTGHEQGVSDLVFSS-DSRFLVSASDDKTIRLWDVP----TATCLKTLI-- 112
           S PP  L    G E  + D+ F+  D + L +AS+D TI  W +P    T      ++  
Sbjct: 66  SNPPILL----GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL 121

Query: 113 -GHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT 170
            GHT  V  V+F+P + N++ S   D  V +WDV+ GK ++V+  HSD +T++++N DG+
Sbjct: 122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181

Query: 171 MIVTSSYDGLCRIWD 185
           ++ T+S D    I D
Sbjct: 182 LLCTTSKDKKLNIID 196

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 68.2 bits (166), Expect = 1e-12
 Identities = 56/256 (21%), Positives = 120/256 (46%), Gaps = 15/256 (5%)

Query: 26  ISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS 85
           + ++ F  DG   A++  +K +  +   SI         P+ +     + +S + ++S  
Sbjct: 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSK-LSGICWNSYI 544

Query: 86  RFLVSASD-DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWD 143
           +  V++S+ +  +++WDV  +  +  +  H   V+ ++++     ++ SG+ D +V++W 
Sbjct: 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 604

Query: 144 VKTGKCLKVLPAHSDPVTAVDFNRD-GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPP 202
           +  G  +  +   ++ +  V F  + G  +   S D     +D          +   +  
Sbjct: 605 INQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663

Query: 203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTG------KILKTYTGHTNSKYCISSTFSVTN 256
           VS+V+F  +   +   T DNTL+LW+ S          L ++ GHTN K  +    SV++
Sbjct: 664 VSYVRFVDSSTLVSSST-DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG--LSVSD 720

Query: 257 GKYIVSGSEDSCVYLW 272
           G YI +GSE + V+++
Sbjct: 721 G-YIATGSETNEVFVY 735

Length = 793

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 5/87 (5%)

Query: 235 LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVA 294
            +T  GHT    C++  FS  +GK + +GS D  + +W+L++ ++++ L+GHT PV  VA
Sbjct: 2   RRTLKGHTGGVTCVA--FS-PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA 58

Query: 295 SHPTENIIASGALDNDRTVKIWTQEKE 321
           +      +ASG+  +D+T+++W  E  
Sbjct: 59  ASADGTYLASGS--SDKTIRLWDLETG 83

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.1 bits (128), Expect = 8e-10
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 146 TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
           +G+ LK L  H+ PVT+V F+ DG  + + S DG  ++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
           GK L+ L  H+ PVT+V F+ DG ++ + S DG  R+WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.0 bits (120), Expect = 9e-09
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 64  SPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD 101
             L+   GH   V+ + FS D   L S SDD T+R+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 62  PPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD 101
               L+   GH   V+ + FS D ++L S SDD TI+LWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 104 TATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD 143
           +   LKTL GHT  V  V F+P    + SG+ D T+++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 106 TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD 143
             L+TL GHT  V  V F+P  N++ SG+ D TVR+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 49.9 bits (119), Expect = 9e-07
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 14/96 (14%)

Query: 65  PLQKFTGHEQGVSDLVFSS-DSRFLVSASDDKTIRLWDVP----------TATCLKTLIG 113
           P+ K  GH   + DL F+   S  L S S+D TIR+W++P             C+  L G
Sbjct: 66  PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI--LKG 123

Query: 114 HTNYVFCVNFNPQSNMIV-SGAFDETVRIWDVKTGK 148
           H   +  +++NP +  I+ S  FD  V IWD++  K
Sbjct: 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 2/40 (5%)

Query: 277 RKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
            K+++ L+GHT PV SVA  P  N++ASG+  +D TV++W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGS--DDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.9 bits (99), Expect = 7e-06
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 276 SRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           S ++++ L+GHT PV SVA  P    +ASG   +D T+K+W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASG--SDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 29/134 (21%), Positives = 63/134 (47%), Gaps = 3/134 (2%)

Query: 26  ISSVKFS-HDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVF-SS 83
           I  V F+  D + L ++S D T++ + +     + +    P+    GH + V  + F  S
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS-DPIVHLQGHTKKVGIVSFHPS 136

Query: 84  DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD 143
               L SA  D  + +WDV     ++ +  H++ +  + +N   +++ + + D+ + I D
Sbjct: 137 AMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIID 196

Query: 144 VKTGKCLKVLPAHS 157
            + G  +  + AH+
Sbjct: 197 PRDGTIVSSVEAHA 210

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 69/333 (20%), Positives = 145/333 (43%), Gaps = 36/333 (10%)

Query: 4   DQSLESFRPYTLTQT--LNGHLRAISSVKFSHDGRLL-ASSSADKTLLTYSLSSISNSDS 60
           D +LES    TL ++  L  +L+ + SV F+   R + A+++A+K L  Y  +   N  S
Sbjct: 371 DDTLES----TLLESSRLMRNLKKLESVYFATRYRQIKAAAAAEKPLARYYSALSENGRS 426

Query: 61  TPPSPLQKFTGHEQGVSD-LVFSSDSR-------FLVSASDDKTIRLWDVPTATCLKTLI 112
           +  S +               + +DSR       FL       +     V        L+
Sbjct: 427 SEKSSMS------NPAKPPDFYINDSRQGGWIDPFLEGLCKYLSFSKLRVKADLKQGDLL 480

Query: 113 GHTNYVFCVNFNPQSNMIVSGAFDETVRIWD----VKTGKCLK---VLPAHSDPVTAVDF 165
             +N V  + F+       +   ++ ++I++    +K G+ +    V  A    ++ + +
Sbjct: 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICW 540

Query: 166 NRD-GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTL 224
           N    + + +S+++G+ ++WD +    +  + + E    S    S +   +  G+ D ++
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSV 600

Query: 225 RLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV-VQKL 283
           +LW+ + G  + T     N   C+   F   +G+ +  GS D  VY ++L++ K+ +  +
Sbjct: 601 KLWSINQGVSIGTIKTKANI-CCVQ--FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM 657

Query: 284 EGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
            GH+  V  V    +  +++S     D T+K+W
Sbjct: 658 IGHSKTVSYVRFVDSSTLVSS---STDNTLKLW 687

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTL 47
           L +TL GH   ++SV FS DG LLAS S D T+
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTV 35

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTL 47
             L +TL GH   ++SV FS DG+ LAS S D T+
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTI 36

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 231 TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE 273
           +G++LKT  GHT     ++  FS  +GKY+ SGS+D  + LW+
Sbjct: 1   SGELLKTLKGHTGPVTSVA--FS-PDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 232 GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLW 272
           GK+L+T  GHT     ++  FS  +G  + SGS+D  V +W
Sbjct: 1   GKLLRTLKGHTGPVTSVA--FS-PDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 188 TGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 228
           +G  +KTL     P V+ V FSP+GK++  G+ D T++LW+
Sbjct: 1   SGELLKTLKGHTGP-VTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 189 GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 228
           G  ++TL     P V+ V FSP+G  +  G+ D T+R+W+
Sbjct: 1   GKLLRTLKGHTGP-VTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 14/133 (10%)

Query: 136 DETVRIWDVKTGKCLKVLPAHSDPVT---AVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           D  V   D  TGK L  +      +    AVD    G + V +    L    DA+TG   
Sbjct: 2   DGVVAALDAATGKVLWRVDLGGTALGGGVAVD---GGRLYVATGKGELVA-LDAATG--- 54

Query: 193 KTLIDDENPPVSFVKFSP--NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISS 250
           K L          +  +P   G  ++V T D +L   +  TGK+L +Y           S
Sbjct: 55  KLLW--RKDLSGEILGAPTVAGGVVVVVTADGSLYALDAETGKLLWSYQRSLPPLTLRGS 112

Query: 251 TFSVTNGKYIVSG 263
           +     G  ++ G
Sbjct: 113 SSPAIVGDTVIVG 125

This domain contains several repeats of the PQQ repeat. Length = 234

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.98
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.98
KOG2096	420	consensus WD40 repeat protein [General function pr	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG1273	405	consensus WD40 repeat protein [General function pr	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.97
KOG2055	514	consensus WD40 repeat protein [General function pr	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.92
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.92
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
KOG0649	325	consensus WD40 repeat protein [General function pr	99.91
KOG1334	559	consensus WD40 repeat protein [General function pr	99.91
COG2319	466	FOG: WD40 repeat [General function prediction only	99.91
KOG4227	609	consensus WD40 repeat protein [General function pr	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
PRK11028	330	6-phosphogluconolactonase; Provisional	99.87
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG1963	792	consensus WD40 repeat protein [General function pr	99.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.83
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.83
PRK01742	429	tolB translocation protein TolB; Provisional	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.8
KOG1963	792	consensus WD40 repeat protein [General function pr	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG1310	758	consensus WD40 repeat protein [General function pr	99.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.78
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG1310	758	consensus WD40 repeat protein [General function pr	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
KOG2139	445	consensus WD40 repeat protein [General function pr	99.75
PRK03629	429	tolB translocation protein TolB; Provisional	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.74
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.73
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.72
KOG2321	703	consensus WD40 repeat protein [General function pr	99.7
PRK02889	427	tolB translocation protein TolB; Provisional	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
PRK04922	433	tolB translocation protein TolB; Provisional	99.69
PRK03629	429	tolB translocation protein TolB; Provisional	99.69
KOG2139	445	consensus WD40 repeat protein [General function pr	99.69
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.68
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
PRK05137	435	tolB translocation protein TolB; Provisional	99.68
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.67
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.65
PRK02889	427	tolB translocation protein TolB; Provisional	99.65
PRK05137	435	tolB translocation protein TolB; Provisional	99.65
KOG1334	559	consensus WD40 repeat protein [General function pr	99.65
PRK04922	433	tolB translocation protein TolB; Provisional	99.65
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.62
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.59
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.58
PRK00178	430	tolB translocation protein TolB; Provisional	99.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.56
PRK04792	448	tolB translocation protein TolB; Provisional	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.55
KOG4547	541	consensus WD40 repeat-containing protein [General	99.54
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.54
PRK00178	430	tolB translocation protein TolB; Provisional	99.53
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.53
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.51
PRK01029	428	tolB translocation protein TolB; Provisional	99.51
PRK04792	448	tolB translocation protein TolB; Provisional	99.5
KOG2321	703	consensus WD40 repeat protein [General function pr	99.49
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.48
PRK01029	428	tolB translocation protein TolB; Provisional	99.45
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.44
KOG2315	566	consensus Predicted translation initiation factor	99.44
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.44
KOG2314	698	consensus Translation initiation factor 3, subunit	99.44
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.44
KOG4547	541	consensus WD40 repeat-containing protein [General	99.42
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.42
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.41
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.41
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.38
COG4946	668	Uncharacterized protein related to the periplasmic	99.37
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.37
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.37
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.36
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.36
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.35
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.34
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.34
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.33
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.33
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.33
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.32
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.32
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.31
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.29
KOG2315	566	consensus Predicted translation initiation factor	99.25
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.25
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.23
PRK04043	419	tolB translocation protein TolB; Provisional	99.21
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.2
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.17
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.16
PRK04043	419	tolB translocation protein TolB; Provisional	99.15
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.14
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.13
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.13
KOG2314	698	consensus Translation initiation factor 3, subunit	99.12
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.11
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.11
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.1
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.09
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.07
COG4946	668	Uncharacterized protein related to the periplasmic	99.07
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.05
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.05
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.04
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.02
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.01
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.0
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.99
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.98
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.97
KOG2695	425	consensus WD40 repeat protein [General function pr	98.97
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.97
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.92
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.91
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.91
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.88
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.84
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.84
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.83
KOG2695	425	consensus WD40 repeat protein [General function pr	98.83
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.81
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.74
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.66
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.64
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.63
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.63
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.61
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.55
KOG3621	726	consensus WD40 repeat-containing protein [General	98.52
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.5
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.49
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.43
COG3391	381	Uncharacterized conserved protein [Function unknow	98.42
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.41
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.4
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.4
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.38
PRK02888	635	nitrous-oxide reductase; Validated	98.37
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.37
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.32
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.3
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.27
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.26
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.25
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.22
PRK02888	635	nitrous-oxide reductase; Validated	98.18
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.17
COG3391	381	Uncharacterized conserved protein [Function unknow	98.16
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.13
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.12
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.12
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.11
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.1
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.08
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.06
KOG3621	726	consensus WD40 repeat-containing protein [General	98.04
KOG2444	238	consensus WD40 repeat protein [General function pr	97.97
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.97
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.93
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.91
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.91
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.9
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.87
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.84
PRK13616	591	lipoprotein LpqB; Provisional	97.82
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.81
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.81
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.79
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.78
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.78
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.78
PRK13616	591	lipoprotein LpqB; Provisional	97.78
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.74
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.7
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.68
PHA02713	557	hypothetical protein; Provisional	97.67
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.62
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.62
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.58
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.5
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.5
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.43
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.41
KOG2395	644	consensus Protein involved in vacuole import and d	97.38
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.35
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.3
PHA02713	557	hypothetical protein; Provisional	97.28
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.28
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.25
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.2
KOG2395	644	consensus Protein involved in vacuole import and d	97.19
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.11
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.06
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.04
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.97
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.95
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.91
KOG2444	238	consensus WD40 repeat protein [General function pr	96.87
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.83
PHA03098	534	kelch-like protein; Provisional	96.79
PRK10115	686	protease 2; Provisional	96.71
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.68
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.66
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.64
PHA03098	534	kelch-like protein; Provisional	96.58
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.58
PHA02790	480	Kelch-like protein; Provisional	96.34
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.32
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.31
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.24
PHA02790	480	Kelch-like protein; Provisional	96.21
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.18
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.02
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.01
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.96
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.88
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.59
COG5167	776	VID27 Protein involved in vacuole import and degra	95.53
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.3
COG4590	733	ABC-type uncharacterized transport system, permeas	95.28
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.28
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.24
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.16
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.14
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.11
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.05
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.94
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.92
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.92
PRK10115	686	protease 2; Provisional	94.43
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.42
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.42
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.37
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.24
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.19
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.18
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.17
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	94.06
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.48
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.48
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.43
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.14
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.04
KOG2247	615	consensus WD40 repeat-containing protein [General	92.99
PLN02193	470	nitrile-specifier protein	92.88
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.8
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.78
COG4590	733	ABC-type uncharacterized transport system, permeas	92.7
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.92
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.62
COG5167	776	VID27 Protein involved in vacuole import and degra	91.61
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.04
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.68
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.67
PLN02153	341	epithiospecifier protein	90.5
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.3
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.22
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	89.95
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.82
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.68
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.43
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.43
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	89.19
PRK13684	334	Ycf48-like protein; Provisional	89.15
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.1
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.89
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.45
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	88.37
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.05
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.96
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.91
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	87.55
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	87.52
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.01
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.01
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.98
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.68
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.32
PRK13684	334	Ycf48-like protein; Provisional	86.17
KOG2247	615	consensus WD40 repeat-containing protein [General	85.57
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.26
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	84.64
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.5
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	84.33
PLN02153	341	epithiospecifier protein	84.04
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	83.35
PLN02193	470	nitrile-specifier protein	82.96
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.77
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	82.65
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.58
PF14727	418	PHTB1_N: PTHB1 N-terminus	82.25
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	81.97
COG5276	370	Uncharacterized conserved protein [Function unknow	80.49
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	80.27
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	80.12

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.1e-54  Score=334.64  Aligned_cols=289  Identities=33%  Similarity=0.650  Sum_probs=256.2

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      ....+.||.++|.|++|+|+|..|++|+.|.++++||+..        ..|....++|..-|.+++|+|||+.||+|+.|
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T--------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~d  178 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT--------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD  178 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC--------CCcceeecCCccEEEEEEECCCcchhhccccC
Confidence            4466899999999999999999999999999999998754        35678899999999999999999999999999


Q ss_pred             CcEEEEecCCcce-eeeeecCcccEEEEEECC-----CCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC
Q 020798           95 KTIRLWDVPTATC-LKTLIGHTNYVFCVNFNP-----QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        95 ~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      |+|++||..++++ ...+.+|...|.+++|.|     ..++|++++.||.+++||+..+.++..+.+|..+|+++.|--+
T Consensus       179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~  258 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE  258 (480)
T ss_pred             CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC
Confidence            9999999988865 457899999999999975     5678999999999999999999999999999999999999654


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeee-----------------------------------------------------
Q 020798          169 GTMIVTSSYDGLCRIWDASTGHCMKTL-----------------------------------------------------  195 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~~~~~~~~-----------------------------------------------------  195 (321)
                      | ++++++.|++|++|+...|.+.+.+                                                     
T Consensus       259 g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e  337 (480)
T KOG0271|consen  259 G-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE  337 (480)
T ss_pred             c-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence            4 8899999999999987553321110                                                     


Q ss_pred             -------------------------ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEe
Q 020798          196 -------------------------IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISS  250 (321)
Q Consensus       196 -------------------------~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  250 (321)
                                               ...|..-|+.+.|+||++++++++.|..|++||.++|+.+.++.+|...+|.+..
T Consensus       338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw  417 (480)
T KOG0271|consen  338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW  417 (480)
T ss_pred             eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence                                     0123344778999999999999999999999999999999999999998887654


Q ss_pred             EEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          251 TFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      .   .|.++|++|+.|.++++||+++.++...+.||.++|.++.|+|||..+++|+  .|+.++||.
T Consensus       418 s---aDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg--kdkv~~lw~  479 (480)
T KOG0271|consen  418 S---ADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG--KDKVLRLWR  479 (480)
T ss_pred             c---cCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC--CceEEEeec
Confidence            3   5789999999999999999999999999999999999999999999999998  558999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.9e-53  Score=332.82  Aligned_cols=297  Identities=32%  Similarity=0.542  Sum_probs=268.9

Q ss_pred             ccCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC--C
Q 020798            8 ESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD--S   85 (321)
Q Consensus         8 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~   85 (321)
                      +...+-.+...--|-.++|..+.|++|++.|+||+.+|.+++|...        ....++.+.+|...|.++.|+|.  +
T Consensus       160 k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~--------~~~~~~~l~gH~~~v~~~~fhP~~~~  231 (459)
T KOG0272|consen  160 KHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP--------QCNLLQTLRGHTSRVGAAVFHPVDSD  231 (459)
T ss_pred             HHhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecC--------CcceeEEEeccccceeeEEEccCCCc
Confidence            3333444444445778999999999999999999999999999653        33567889999999999999996  5


Q ss_pred             CEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEE
Q 020798           86 RFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  165 (321)
                      ..+++|+.||++++|++.+.+++..+.+|...|..++|+|+|++|++++.|.+-++||++++.......+|...|.+++|
T Consensus       232 ~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf  311 (459)
T KOG0272|consen  232 LNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAF  311 (459)
T ss_pred             cceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEe
Confidence            68999999999999999998889999999999999999999999999999999999999999888888999999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCce
Q 020798          166 NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK  245 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  245 (321)
                      +|||.++++|+.|..-+|||++++.++..+.. |...|..++|+|+|..|++|+.|++++|||++..+.+..+.+|.+.+
T Consensus       312 ~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlV  390 (459)
T KOG0272|consen  312 QPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLV  390 (459)
T ss_pred             cCCCceeeccCccchhheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchh
Confidence            99999999999999999999999999887654 77789999999999999999999999999999999999999998876


Q ss_pred             eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          246 YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ..+  .|.+..|.+|++++.|+++++|...+..+++.+.||.+.|.++.++|++..++++|.|  ++||+|.
T Consensus       391 S~V--k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D--RT~KLW~  458 (459)
T KOG0272|consen  391 SQV--KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD--RTIKLWR  458 (459)
T ss_pred             hhe--EecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccC--ceeeecc
Confidence            554  3444579999999999999999999999999999999999999999999999999976  7999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.9e-48  Score=292.17  Aligned_cols=291  Identities=26%  Similarity=0.494  Sum_probs=257.3

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      ..+++|+||.+.|.++.|++|.++|+++|.||.+.+||....+        ....++-...-|..++|+|.|+++|+|+.
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--------K~haipl~s~WVMtCA~sPSg~~VAcGGL  117 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--------KVHAIPLPSSWVMTCAYSPSGNFVACGGL  117 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc--------ceeEEecCceeEEEEEECCCCCeEEecCc
Confidence            4568899999999999999999999999999999999865422        22333444567889999999999999999


Q ss_pred             CCcEEEEecCCc------ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEcc
Q 020798           94 DKTIRLWDVPTA------TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR  167 (321)
Q Consensus        94 d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~  167 (321)
                      |+...||++.+.      +..+.+.+|.+++.|+.|-+ .+.|++++.|.++-+||+++++.+..+.+|.+.|.++++.|
T Consensus       118 dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  118 DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP  196 (343)
T ss_pred             CceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence            999999999754      33456889999999999988 46789999999999999999999999999999999999999


Q ss_pred             -CCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCcee
Q 020798          168 -DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKY  246 (321)
Q Consensus       168 -~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  246 (321)
                       +++.|++|+-|+..++||++.+.+.+.+. .++..|+.+.|.|+|.-+++|+.|++.++||++..+.+..|... ....
T Consensus       197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~  274 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-SIIC  274 (343)
T ss_pred             CCCCeEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-cccC
Confidence             89999999999999999999998887764 56788999999999999999999999999999999999888743 3333


Q ss_pred             EEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       247 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      .+....+...|++|.+|..|..+.|||.-.++.+..+.+|.++|.++..+|||.-+++||+|  ..+|||.
T Consensus       275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD--s~lriW~  343 (343)
T KOG0286|consen  275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD--STLRIWA  343 (343)
T ss_pred             CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchh--HheeecC
Confidence            44555555789999999999999999999999999999999999999999999999999998  5899994

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.5e-45  Score=315.43  Aligned_cols=304  Identities=47%  Similarity=0.865  Sum_probs=270.6

Q ss_pred             CcceeeeeccCC-cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE
Q 020798           11 RPYTLTQTLNGH-LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV   89 (321)
Q Consensus        11 ~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~   89 (321)
                      ..+.+.+.+.+| ...|.++.|+|+|+.+++++.++.+++|.......      ..+..+.+|...|++++|+|++++++
T Consensus       146 ~~~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~  219 (456)
T KOG0266|consen  146 RVFSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLL  219 (456)
T ss_pred             ccceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEE
Confidence            334455666555 88999999999999999999999999998743321      23455689999999999999999999


Q ss_pred             EEeCCCcEEEEec-CCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC
Q 020798           90 SASDDKTIRLWDV-PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        90 ~~~~d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      +++.|++|+|||+ ..+..++.+.+|...|++++|+|+++.+++|+.|++|++||++++++...+..|.+.|++++|+++
T Consensus       220 s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d  299 (456)
T KOG0266|consen  220 SGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD  299 (456)
T ss_pred             EecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC
Confidence            9999999999999 555888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCc--eeeeeccCCCC-CeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCce
Q 020798          169 GTMIVTSSYDGLCRIWDASTGH--CMKTLIDDENP-PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK  245 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  245 (321)
                      ++.+++++.|+.|++||+.++.  +...+...... ++..+.|+|++.+++++..|+.+++||+..++.+..+.+|....
T Consensus       300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~  379 (456)
T KOG0266|consen  300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV  379 (456)
T ss_pred             CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc
Confidence            9999999999999999999988  44555444444 68999999999999999999999999999999999999988765


Q ss_pred             eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCC-CCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          246 YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGH-TDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .|+......+.+.++++|+.|+.|++|+..++..+..+.+| ...+..++++|..+++++++.+.|+.|++|..+.
T Consensus       380 ~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~  455 (456)
T KOG0266|consen  380 RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYDF  455 (456)
T ss_pred             eeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence            56655555678999999999999999999999989999999 8899999999999999999988899999998764

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.5e-46  Score=294.50  Aligned_cols=260  Identities=32%  Similarity=0.561  Sum_probs=233.7

Q ss_pred             CCccccccCCcc--eeeeeccCCcccEEEEEECCC--CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEE
Q 020798            2 SSDQSLESFRPY--TLTQTLNGHLRAISSVKFSHD--GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVS   77 (321)
Q Consensus         2 ~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~   77 (321)
                      |+++..+-+...  .+.+.|.||...|.++.|+|.  +..+|+|+.||++++|++..        ..+++.+.+|...|.
T Consensus       194 swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~--------e~~l~~l~gH~~RVs  265 (459)
T KOG0272|consen  194 SWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ--------ETPLQDLEGHLARVS  265 (459)
T ss_pred             ecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC--------Ccchhhhhcchhhhe
Confidence            344445444433  467889999999999999997  56899999999999997653        367899999999999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCC
Q 020798           78 DLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHS  157 (321)
Q Consensus        78 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  157 (321)
                      .++|+|+|++|++++-|.+-++||+.++..+....||+..|++++|.|||..+++|+.|..-+|||+++++++..+.+|.
T Consensus       266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~  345 (459)
T KOG0272|consen  266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI  345 (459)
T ss_pred             eeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccc
Confidence            99999999999999999999999999999888889999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEE
Q 020798          158 DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYSTGKILK  236 (321)
Q Consensus       158 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~~i~i~d~~~~~~~~  236 (321)
                      .+|.+++|+|+|-.+++|+.|++++|||++.-.++..+ ..|..-|+.+.|+| .|.+|++++.|++++||...+..+++
T Consensus       346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k  424 (459)
T KOG0272|consen  346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK  424 (459)
T ss_pred             cceeeEeECCCceEEeecCCCCcEEEeeecccccceec-ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccch
Confidence            99999999999999999999999999999987765554 45667799999998 78999999999999999999999999


Q ss_pred             EEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEE
Q 020798          237 TYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd  273 (321)
                      ++.+|.+.+.++..   .++++++++++.|+++++|.
T Consensus       425 sLaGHe~kV~s~Di---s~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  425 SLAGHEGKVISLDI---SPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hhcCCccceEEEEe---ccCCceEEEeccCceeeecc
Confidence            99999988665443   47899999999999999995

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-45  Score=287.50  Aligned_cols=298  Identities=29%  Similarity=0.497  Sum_probs=256.8

Q ss_pred             cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      |.+-.+.+..|..+|..+.|||+|+|||+++.|.+..+|.+..-     .......++.+|..+|.-+.||||.++|+++
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-----~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC  287 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-----VHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC  287 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-----cceeeeeeeecccCceEEEEECCCCCeEEec
Confidence            55566788999999999999999999999999999999987532     1134567788999999999999999999999


Q ss_pred             eCCCcEEEEecCCcceeeeee-cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeC-CCCCeeEEEEccCC
Q 020798           92 SDDKTIRLWDVPTATCLKTLI-GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPA-HSDPVTAVDFNRDG  169 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~  169 (321)
                      +.|..+.+||+.++.+...+. ++...+.+++|.|||..+++|+.|+.|..||+.... ...... ....|.+++..+||
T Consensus       288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dg  366 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDG  366 (519)
T ss_pred             CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCC
Confidence            999999999999998655442 345778999999999999999999999999986443 333332 23568999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEE
Q 020798          170 TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCIS  249 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  249 (321)
                      +.+++.+.|..+++++..+......+  ....+++++.++.+++++++.-.+..+++||+...+.++.+.+|....+.+.
T Consensus       367 k~vl~v~~d~~i~l~~~e~~~dr~li--se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr  444 (519)
T KOG0293|consen  367 KYVLLVTVDKKIRLYNREARVDRGLI--SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR  444 (519)
T ss_pred             cEEEEEecccceeeechhhhhhhccc--cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE
Confidence            99999999999999998765433222  3456799999999999999999999999999999999999999999999999


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCC-ceEEEEeecCCccEEEcccc
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE-NIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ++|-..+..++++|++|+.|+||+..+++++..+.||...|++|+|+|.. .++|+||  +||+|+||...
T Consensus       445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas--DDgtIRIWg~~  513 (519)
T KOG0293|consen  445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS--DDGTIRIWGPS  513 (519)
T ss_pred             eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccC--CCCeEEEecCC
Confidence            99988888999999999999999999999999999999999999999986 5688887  46999999875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-43  Score=263.23  Aligned_cols=294  Identities=29%  Similarity=0.522  Sum_probs=243.3

Q ss_pred             eeeeccCCcccEEEEEECCCC-CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           15 LTQTLNGHLRAISSVKFSHDG-RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      +..+|++|.+.|+.++..+.+ +.+++++.|..+.+|++..-   +.....+++.+++|+..|..+..+++|++.++++.
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d---d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw   83 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD---DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW   83 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC---ccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence            556789999999999999874 68899999999999998764   34455678899999999999999999999999999


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC--CCCeeEEEEccC--C
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH--SDPVTAVDFNRD--G  169 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~--~  169 (321)
                      |+.+++||+.+++....+.+|...|.+++++||++++++|+.|.+|++|++... +..++..+  .+-|.++.|+|+  .
T Consensus        84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~  162 (315)
T KOG0279|consen   84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESN  162 (315)
T ss_pred             cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCC
Confidence            999999999999999999999999999999999999999999999999998744 44444433  678999999998  5


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEE
Q 020798          170 TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCIS  249 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  249 (321)
                      ..+++++.|+++++||+++.+....+. .+...++.++++|||..+++|+.||.+.+||++.++.+..+... ..   +.
T Consensus       163 p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~~---v~  237 (315)
T KOG0279|consen  163 PIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-DI---VN  237 (315)
T ss_pred             cEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-Ce---Ee
Confidence            689999999999999999877555543 56677999999999999999999999999999999988777533 22   33


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC----C-----CCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG----H-----TDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----h-----~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .+.+.|+.-.|+ +..+-.|+|||+.++..+..++-    .     .-.-.+++|+++|..|.+|-  .|+.|++|...+
T Consensus       238 sl~fspnrywL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~--td~~irv~qv~~  314 (315)
T KOG0279|consen  238 SLCFSPNRYWLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY--TDNVIRVWQVAK  314 (315)
T ss_pred             eEEecCCceeEe-eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee--cCCcEEEEEeec
Confidence            444446554444 44556699999999887665432    1     11236789999999999986  568999997643

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-43  Score=259.19  Aligned_cols=292  Identities=30%  Similarity=0.535  Sum_probs=259.4

Q ss_pred             cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      |....+.+..|.++|.+++|+-||+|.++|+.|+++++|+.        .....+.++.+|...|.+++.+.|...|++|
T Consensus         6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp--------~rg~liktYsghG~EVlD~~~s~Dnskf~s~   77 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNP--------LRGALIKTYSGHGHEVLDAALSSDNSKFASC   77 (307)
T ss_pred             cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecc--------cccceeeeecCCCceeeeccccccccccccC
Confidence            44456778999999999999999999999999999999953        3345678899999999999999999999999


Q ss_pred             eCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC--EEEEEEeCCCCCeeEEEEccCC
Q 020798           92 SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG--KCLKVLPAHSDPVTAVDFNRDG  169 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~  169 (321)
                      +.|..+.+||+.+++..+.+.+|.+.|+.+.|+.+...+++|+.|..+++||.++.  ++++.+....+.|.++...  +
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~  155 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--E  155 (307)
T ss_pred             CCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--c
Confidence            99999999999999999999999999999999999999999999999999998754  5777777777889888875  4


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEE
Q 020798          170 TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCIS  249 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  249 (321)
                      ..+++|+.||+++.||++.+......   ...+|+++.|+++++..++++.|+++++.|-.+|++++.+.+|.+..+.+.
T Consensus       156 heIvaGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld  232 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD  232 (307)
T ss_pred             cEEEeeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence            57899999999999999998765443   356799999999999999999999999999999999999999999999888


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCC-eEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDP-VISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +++. .....+++|++||.|++||+....++.++..|... |.+++++|...-|.++.   +..+.+|..+.
T Consensus       233 c~l~-qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~---~~~~~~~~~~~  300 (307)
T KOG0316|consen  233 CCLN-QSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT---GHGDLFWYQEN  300 (307)
T ss_pred             eeec-ccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec---CCceeceeehh
Confidence            7776 45678999999999999999999999999988877 89999999988777764   35688887653

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-44  Score=278.87  Aligned_cols=251  Identities=33%  Similarity=0.620  Sum_probs=217.1

Q ss_pred             ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC
Q 020798           66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK  145 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  145 (321)
                      ...+.+|...|.++.|+|+|+.|++|+.|.++++||+.+.++....++|...|.|++|+|||+.|++|+.||.|++||.+
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEE-EEEeCCCCCeeEEEEcc-----CCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe
Q 020798          146 TGKCL-KVLPAHSDPVTAVDFNR-----DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       146 ~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      +++++ ..+..|...|++++|.|     ..++|++++.||.++|||+..+.++..+ ..|..+|+++.|--+| +|++++
T Consensus       188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrwGG~g-liySgS  265 (480)
T KOG0271|consen  188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCVRWGGEG-LIYSGS  265 (480)
T ss_pred             CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEEEEcCCc-eEEecC
Confidence            88754 57889999999999976     4568999999999999999988877665 4677889999997555 788999


Q ss_pred             cCCeEEEEeCCCCcEEEEEeccCCce------------------------------------------------------
Q 020798          220 LDNTLRLWNYSTGKILKTYTGHTNSK------------------------------------------------------  245 (321)
Q Consensus       220 ~d~~i~i~d~~~~~~~~~~~~~~~~~------------------------------------------------------  245 (321)
                      .|++|++|+...|+..+.+.+|..-+                                                      
T Consensus       266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd  345 (480)
T KOG0271|consen  266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD  345 (480)
T ss_pred             CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence            99999999987765544444331100                                                      


Q ss_pred             ----------------------eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEE
Q 020798          246 ----------------------YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA  303 (321)
Q Consensus       246 ----------------------~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  303 (321)
                                            ..+.-..+.||++++|+++-|..|++|+.++++.+..++||-.+|..++|+.|.++|+
T Consensus       346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlV  425 (480)
T KOG0271|consen  346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLV  425 (480)
T ss_pred             ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEE
Confidence                                  0112233457999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCccEEEccccc
Q 020798          304 SGALDNDRTVKIWTQEK  320 (321)
Q Consensus       304 s~~~d~~~~i~iw~~~~  320 (321)
                      +||.  |.++|+|+.+.
T Consensus       426 S~Sk--DsTLKvw~V~t  440 (480)
T KOG0271|consen  426 SGSK--DSTLKVWDVRT  440 (480)
T ss_pred             EcCC--CceEEEEEeee
Confidence            9995  47999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.3e-42  Score=256.28  Aligned_cols=270  Identities=22%  Similarity=0.423  Sum_probs=232.4

Q ss_pred             CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc--eeeeeec
Q 020798           36 RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTLIG  113 (321)
Q Consensus        36 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~  113 (321)
                      -+|+++|.|-+|++|....        .....+++-.+..|+.+.+.|+++.|++++. -.|++||+.++.  ++.++.+
T Consensus        11 viLvsA~YDhTIRfWqa~t--------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~   81 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALT--------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEG   81 (311)
T ss_pred             eEEEeccCcceeeeeehhc--------CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEec
Confidence            4789999999999996543        3455566666778999999999999998875 469999998764  5778899


Q ss_pred             CcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceee
Q 020798          114 HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK  193 (321)
Q Consensus       114 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  193 (321)
                      |...|..+.|..+|+.+++|+.||++++||++...+.+.+ .|..+|+++..+|+...|++|..+|.|++||+....+..
T Consensus        82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~  160 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH  160 (311)
T ss_pred             cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc
Confidence            9999999999999999999999999999999986665555 467999999999999999999999999999999988888


Q ss_pred             eeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC------cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC
Q 020798          194 TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG------KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS  267 (321)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  267 (321)
                      .+..+....+..+...|+|.+++.+...|+..+|++.+.      +++..++.|.+.   +..+..+|++++||+++.|.
T Consensus       161 ~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~---il~C~lSPd~k~lat~ssdk  237 (311)
T KOG0315|consen  161 ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH---ILRCLLSPDVKYLATCSSDK  237 (311)
T ss_pred             ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce---EEEEEECCCCcEEEeecCCc
Confidence            887777788999999999999999999999999998654      345566666553   23344568999999999999


Q ss_pred             eEEEEEcccc-eEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          268 CVYLWELQSR-KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       268 ~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +++||+.... +....+++|...+++++||.|+.||++|+.  |..+++|+++.
T Consensus       238 tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass--d~~~rlW~~~~  289 (311)
T KOG0315|consen  238 TVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS--DHTARLWDLSA  289 (311)
T ss_pred             eEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC--CCceeeccccc
Confidence            9999999887 667788999999999999999999999995  48999999864

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1e-44  Score=284.31  Aligned_cols=285  Identities=27%  Similarity=0.506  Sum_probs=247.1

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLW  100 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iw  100 (321)
                      .-..+|..++|.|+|+.|++|+..|.+.+|......        ....+..|+..|+++.|++++.++++|..+|.|++|
T Consensus        94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyW  165 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYW  165 (464)
T ss_pred             ccccceeeEEEcCCCceeEeecccccEEEecCceee--------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEec
Confidence            345689999999999999999999999999653321        123456899999999999999999999999999999


Q ss_pred             ecCCcceeeeeec-CcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC
Q 020798          101 DVPTATCLKTLIG-HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG  179 (321)
Q Consensus       101 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  179 (321)
                      +..-+. ++.+.+ |.+.|.+++|+|+...|++|+.||+|++||....+....+.+|.-.|.+++|+|...++++++.|.
T Consensus       166 qpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn  244 (464)
T KOG0284|consen  166 QPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN  244 (464)
T ss_pred             ccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc
Confidence            976554 344444 458999999999999999999999999999998888888899999999999999999999999999


Q ss_pred             eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeE
Q 020798          180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY  259 (321)
Q Consensus       180 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (321)
                      .|++||.+++.++.++. .+...|..+.|+|++++|++++.|..+++||+++.+.+..+.+|.....++.  +.+-...+
T Consensus       245 lVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~--WhP~~~~l  321 (464)
T KOG0284|consen  245 LVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLT--WHPLNESL  321 (464)
T ss_pred             eeEeecCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeec--cccccccc
Confidence            99999999999988764 4567799999999999999999999999999999999999999988766553  44556788


Q ss_pred             EEEeCCCCeEEEEEcccceEEEEe-cCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          260 IVSGSEDSCVYLWELQSRKVVQKL-EGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      |.+|+.||.|..|.+...+.+..+ .+|...|++++|||-|-+|++|+  +|.++++|...
T Consensus       322 ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgs--nd~t~rfw~r~  380 (464)
T KOG0284|consen  322 FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGS--NDRTVRFWTRN  380 (464)
T ss_pred             eeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecC--CCcceeeeccC
Confidence            999999999999999855554444 56999999999999999999998  56899999753

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.1e-44  Score=289.89  Aligned_cols=299  Identities=28%  Similarity=0.557  Sum_probs=263.5

Q ss_pred             ccCCcceeeeeccCCcccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCC
Q 020798            8 ESFRPYTLTQTLNGHLRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR   86 (321)
Q Consensus         8 ~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~   86 (321)
                      +-+.|-.....+.||..+|+++.|.| .+.+|++++.|+.|++|++..       ....++++.+|..+|.+++|+++|.
T Consensus       199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-------~~~~lrtf~gH~k~Vrd~~~s~~g~  271 (503)
T KOG0282|consen  199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-------DRRCLRTFKGHRKPVRDASFNNCGT  271 (503)
T ss_pred             eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-------CcceehhhhcchhhhhhhhccccCC
Confidence            44557778889999999999999999 899999999999999998754       2456889999999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEE
Q 020798           87 FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  165 (321)
                      .+++++-|+.+++||++++++...+. ....+.|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|
T Consensus       272 ~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F  350 (503)
T KOG0282|consen  272 SFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF  350 (503)
T ss_pred             eeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence            99999999999999999999887764 35567899999998 88999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC---cEEEEEeccC
Q 020798          166 NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG---KILKTYTGHT  242 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~  242 (321)
                      -++++.+++.+.|+++++|+.+.+..++.+.........++..+|+++++++-+.|+.|.+|.+...   ...+.+.+|.
T Consensus       351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~  430 (503)
T KOG0282|consen  351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS  430 (503)
T ss_pred             ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence            9999999999999999999998876666555444555678899999999999999999999986532   2345677887


Q ss_pred             CceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCC-ceEEEEeecCCccEEEcc
Q 020798          243 NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE-NIIASGALDNDRTVKIWT  317 (321)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~d~~~~i~iw~  317 (321)
                      ...+.+.+.|+ +||++|++|+.||.+.+||.++.+++..+++|.+++..+.|||.. ..+|+++.|  |.|++|+
T Consensus       431 vaGys~~v~fS-pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~--G~Ikiwd  503 (503)
T KOG0282|consen  431 VAGYSCQVDFS-PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWD--GLIKIWD  503 (503)
T ss_pred             ccCceeeEEEc-CCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccC--ceeEecC
Confidence            77777766665 799999999999999999999999999999999999999999986 678888875  8999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.6e-42  Score=260.98  Aligned_cols=287  Identities=29%  Similarity=0.524  Sum_probs=245.8

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      ..+.||.+.|+.+.|+|+|..||+|+.|..|.+|.+.+-       .+....+++|++.|..+.|.++++.+++++.|.+
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-------ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-------CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT  113 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-------ccceeeeccccceeEeeeeccCCCEEEEecCCce
Confidence            446899999999999999999999999999999985431       2234556799999999999999999999999999


Q ss_pred             EEEEecCCcceeeeeecCcccEEEEEECCCCC-EEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE
Q 020798           97 IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      ++.||++++++.+.+++|...+..+..+.-|. .+.+++.|+++++||+++..++++++. .-+++++.|..++..+++|
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sg  192 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISG  192 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeec
Confidence            99999999999999999999999888554454 466788999999999999888877643 5578999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCC----CcEEEEEeccCCc--eeEEE
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST----GKILKTYTGHTNS--KYCIS  249 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~--~~~~~  249 (321)
                      +-|+.|++||++.+.....+ ..+..+|+.+..+|+|.++.+-+.|+++++||++.    .+.+..+.++...  ...+.
T Consensus       193 gIdn~ikvWd~r~~d~~~~l-sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~  271 (338)
T KOG0265|consen  193 GIDNDIKVWDLRKNDGLYTL-SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK  271 (338)
T ss_pred             cccCceeeeccccCcceEEe-ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence            99999999999988766655 45667899999999999999999999999999874    3447777765422  22233


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEE
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKI  315 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~i  315 (321)
                       +.+.+++..+.+|+.|+.+++||....+.+.++.||.+.|+++.|+|.+.+|.+++.|  ++|++
T Consensus       272 -cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd--k~i~l  334 (338)
T KOG0265|consen  272 -CSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD--KTIYL  334 (338)
T ss_pred             -eeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC--ceeEe
Confidence             3345789999999999999999999999999999999999999999999999999965  67765

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-42  Score=269.08  Aligned_cols=291  Identities=33%  Similarity=0.608  Sum_probs=262.3

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      +.+.+.+.+|..+|+.+-|+|+-..++++++|+++++||....        +....+++|..++.+++|+..|++|++++
T Consensus        98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--------~~e~~LrGHt~sv~di~~~a~Gk~l~tcS  169 (406)
T KOG0295|consen   98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--------ELERSLRGHTDSVFDISFDASGKYLATCS  169 (406)
T ss_pred             CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch--------hhhhhhhccccceeEEEEecCccEEEecC
Confidence            4678888999999999999999999999999999999987643        34677899999999999999999999999


Q ss_pred             CCCcEEEEecCC-cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCE
Q 020798           93 DDKTIRLWDVPT-ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTM  171 (321)
Q Consensus        93 ~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  171 (321)
                      .|-.+++||..+ .++++.+.+|...|.++.|-|.|+++++++.|.+|+.|++.++-++.++++|..-+..++.+.||.+
T Consensus       170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti  249 (406)
T KOG0295|consen  170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTI  249 (406)
T ss_pred             CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeE
Confidence            999999999987 5778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC---------------CCEEEEEecCCeEEEEeCCCCcEEE
Q 020798          172 IVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN---------------GKFILVGTLDNTLRLWNYSTGKILK  236 (321)
Q Consensus       172 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------g~~l~~~~~d~~i~i~d~~~~~~~~  236 (321)
                      +++++.|.++++|-+.+.++...+ ..++.++.+++|.|.               ++++++++.|++|++||+.++..+.
T Consensus       250 ~As~s~dqtl~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~  328 (406)
T KOG0295|consen  250 IASCSNDQTLRVWVVATKQCKAEL-REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF  328 (406)
T ss_pred             EEecCCCceEEEEEeccchhhhhh-hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence            999999999999999887654433 456667888888653               3589999999999999999999999


Q ss_pred             EEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEc
Q 020798          237 TYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW  316 (321)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw  316 (321)
                      ++.+|.+-+..   ....|.|+||+++..|+++++||++++++.+.+..|...|+++.|+.+..++++|+.|  ..+++|
T Consensus       329 tL~ghdnwVr~---~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd--qt~Kvw  403 (406)
T KOG0295|consen  329 TLVGHDNWVRG---VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD--QTVKVW  403 (406)
T ss_pred             EEecccceeee---eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc--ceeeee
Confidence            99999876443   3445789999999999999999999999999999999999999999999999999976  689998


Q ss_pred             c
Q 020798          317 T  317 (321)
Q Consensus       317 ~  317 (321)
                      -
T Consensus       404 E  404 (406)
T KOG0295|consen  404 E  404 (406)
T ss_pred             e
Confidence            4

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.8e-42  Score=267.73  Aligned_cols=299  Identities=26%  Similarity=0.526  Sum_probs=261.5

Q ss_pred             cccccCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC
Q 020798            5 QSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD   84 (321)
Q Consensus         5 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~   84 (321)
                      ..++..-|+++.+.++||.+.|.|+++.|..+.|++|+.|++++|||+..        ......+++|-..|..+++++-
T Consensus       133 ~rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat--------g~LkltltGhi~~vr~vavS~r  204 (460)
T KOG0285|consen  133 PRPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT--------GQLKLTLTGHIETVRGVAVSKR  204 (460)
T ss_pred             CCccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc--------CeEEEeecchhheeeeeeeccc
Confidence            34566678999999999999999999999999999999999999999864        3356778999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEE
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVD  164 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  164 (321)
                      ..|+++++.|+.|+-||++.++.++.+.+|-..|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|.++.
T Consensus       205 HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  205 HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM  284 (460)
T ss_pred             CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCc
Q 020798          165 FNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS  244 (321)
Q Consensus       165 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  244 (321)
                      +.|....+++|+.|++|++||++.++.+..+. .+...+.+++.+|....+++++.|. |+-|++..+..+..+.+|..-
T Consensus       285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~i  362 (460)
T KOG0285|consen  285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAI  362 (460)
T ss_pred             eecCCCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccce
Confidence            99988899999999999999999998777664 5667799999999999888888775 999999999988888887664


Q ss_pred             eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec-----C---CCCCeEEEEecCCCceEEEEeecCCccEEEc
Q 020798          245 KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE-----G---HTDPVISVASHPTENIIASGALDNDRTVKIW  316 (321)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~---h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw  316 (321)
                      ...+..    ....++++|+.+|.+.+||.+++-..+...     |   -...|.+.+|...|..|++|..  |.+|++|
T Consensus       363 intl~~----nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea--dKtIk~~  436 (460)
T KOG0285|consen  363 INTLSV----NSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA--DKTIKMY  436 (460)
T ss_pred             eeeeee----ccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccC--CcceEEE
Confidence            443332    345688999999999999998875443331     1   1346889999999999999974  5799999


Q ss_pred             ccc
Q 020798          317 TQE  319 (321)
Q Consensus       317 ~~~  319 (321)
                      ..+
T Consensus       437 keD  439 (460)
T KOG0285|consen  437 KED  439 (460)
T ss_pred             ecc
Confidence            764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.7e-41  Score=270.82  Aligned_cols=301  Identities=28%  Similarity=0.432  Sum_probs=250.9

Q ss_pred             ceeeeeccCCcccEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccc--cc----cccccEEEEEECCCC
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQK--FT----GHEQGVSDLVFSSDS   85 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~--~~----~h~~~i~~~~~~~~~   85 (321)
                      ....+.+. |..+|.+.+|+|-.. .+++++.|-..++|++................  +.    .....|++++|+.+|
T Consensus       169 ~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G  247 (524)
T KOG0273|consen  169 SSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG  247 (524)
T ss_pred             ccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC
Confidence            34445555 999999999999777 89999999999999886521111110000000  01    123679999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEE
Q 020798           86 RFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  165 (321)
                      ..|++|+.||.+++|+.... .+.++..|.++|+++.|+.+|++|++++.|+++.+||..+++..+.+..|..+..++.|
T Consensus       248 ~~LatG~~~G~~riw~~~G~-l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW  326 (524)
T KOG0273|consen  248 TLLATGSEDGEARIWNKDGN-LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW  326 (524)
T ss_pred             CeEEEeecCcEEEEEecCch-hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence            99999999999999997654 46778889999999999999999999999999999999999999999999998888999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCce
Q 020798          166 NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK  245 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  245 (321)
                      ..+ ..|++++.|+.|+++.+....+..++.. |...|..+.|+|.|.+|++++.|++++||+.........+..|...+
T Consensus       327 ~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei  404 (524)
T KOG0273|consen  327 QSN-DEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI  404 (524)
T ss_pred             ecC-ceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccce
Confidence            754 4689999999999999987777777765 77789999999999999999999999999998888888888888766


Q ss_pred             eEEEeEE------EecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          246 YCISSTF------SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       246 ~~~~~~~------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +.+...-      .+..+..+++++.|++|++||+..+.+++.+..|..+|.+|+|+|+++++|+|+.|  |.|.||+.+
T Consensus       405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d--g~V~iws~~  482 (524)
T KOG0273|consen  405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD--GCVHIWSTK  482 (524)
T ss_pred             eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCC--CeeEecccc
Confidence            5543321      11235689999999999999999999999999999999999999999999999965  789999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.6e-40  Score=268.84  Aligned_cols=287  Identities=43%  Similarity=0.758  Sum_probs=249.4

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      +.+++|..+|++++|+|++++|++++.|+.+.+|++...        .....+..|...+..+.|+|+++++++++.++.
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~   74 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGTYLASGSSDKT   74 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCCEEEEEcCCCe
Confidence            457799999999999999999999999999999987542        234556778888999999999999999999999


Q ss_pred             EEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEe
Q 020798           97 IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS  176 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  176 (321)
                      |++|++.+++....+..|...+.++.|+|+++++++++.++.+++||+++++....+..|...+.+++|+|++.++++++
T Consensus        75 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  154 (289)
T cd00200          75 IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS  154 (289)
T ss_pred             EEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence            99999998877788888998999999999988888888899999999998888888888999999999999988888888


Q ss_pred             CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecC
Q 020798          177 YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       177 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (321)
                      .++.+++||+++++....+. .+...+..+.|+|+++.+++++.++.+++||++.++.+..+..+......+   ...++
T Consensus       155 ~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~---~~~~~  230 (289)
T cd00200         155 QDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV---AFSPD  230 (289)
T ss_pred             CCCcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE---EEcCC
Confidence            89999999998776655543 445578899999999999999999999999999988888876666544333   33456


Q ss_pred             CeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          257 GKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      +.++++++.||.|++||+.+++.+..+..|..+|.+++|+|++.+|++++.  |+.|++|+
T Consensus       231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~iw~  289 (289)
T cd00200         231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA--DGTIRIWD  289 (289)
T ss_pred             CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC--CCeEEecC
Confidence            888888888999999999988888888899999999999999999999984  57999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-40  Score=246.98  Aligned_cols=289  Identities=29%  Similarity=0.478  Sum_probs=233.5

Q ss_pred             eeeeeccCCcccEEEEEECCC-CCEEEEecCCceEEEeeccccCCCCCCCCCccccc-ccccccEEEEEECCCCCEEEEE
Q 020798           14 TLTQTLNGHLRAISSVKFSHD-GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF-TGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~-g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      .+.+.+++|++.+..++|+|- |.+||+|+.|+.|++|+......     ......+ .+|+..|++++|+|.|++|++|
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-----~~ck~vld~~hkrsVRsvAwsp~g~~La~a   79 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-----WTCKTVLDDGHKRSVRSVAWSPHGRYLASA   79 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-----EEEEEeccccchheeeeeeecCCCcEEEEe
Confidence            356778999999999999998 99999999999999998764111     1111112 3799999999999999999999


Q ss_pred             eCCCcEEEEecCC--cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC---EEEEEEeCCCCCeeEEEEc
Q 020798           92 SDDKTIRLWDVPT--ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG---KCLKVLPAHSDPVTAVDFN  166 (321)
Q Consensus        92 ~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~~  166 (321)
                      +-|.++.||.-..  .+++..+.||.+.|.+++|+++|++||+|+.|+.+-+|.+..+   ++...++.|...|..+.|+
T Consensus        80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH  159 (312)
T KOG0645|consen   80 SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH  159 (312)
T ss_pred             eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence            9999999997653  4678889999999999999999999999999999999998744   4677889999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC---CceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCC
Q 020798          167 RDGTMIVTSSYDGLCRIWDAST---GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN  243 (321)
Q Consensus       167 ~~~~~l~~~~~dg~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  243 (321)
                      |...+|+++++|++|++|+-..   -.+...+ ..+...+.+++|++.|..|++++.|++++||...+.-    -..|..
T Consensus       160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr  234 (312)
T KOG0645|consen  160 PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSR  234 (312)
T ss_pred             CCcceeEEeccCCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhccc
Confidence            9999999999999999997652   2345554 4555689999999999999999999999999855221    011234


Q ss_pred             ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc------eEE-EEecCCCCCeEEEEecCC-CceEEEEeecCCccEEE
Q 020798          244 SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR------KVV-QKLEGHTDPVISVASHPT-ENIIASGALDNDRTVKI  315 (321)
Q Consensus       244 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~-~~~~~h~~~v~~~~~~p~-~~~l~s~~~d~~~~i~i  315 (321)
                      ..+.+...     ...|++++.|+.|++|.-...      +++ +.-..|...|++++|+|. .++|++||  +||.|++
T Consensus       235 ~~Y~v~W~-----~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~--DDG~v~~  307 (312)
T KOG0645|consen  235 ALYDVPWD-----NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG--DDGIVNF  307 (312)
T ss_pred             ceEeeeec-----ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC--CCceEEE
Confidence            44433321     457999999999999987542      112 234568899999999995 68899988  4599999


Q ss_pred             cccc
Q 020798          316 WTQE  319 (321)
Q Consensus       316 w~~~  319 (321)
                      |.++
T Consensus       308 W~l~  311 (312)
T KOG0645|consen  308 WELE  311 (312)
T ss_pred             EEec
Confidence            9876

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6.4e-40  Score=265.15  Aligned_cols=297  Identities=24%  Similarity=0.444  Sum_probs=237.9

Q ss_pred             CcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccc---ccccccEEEEEECCCCCE
Q 020798           11 RPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF---TGHEQGVSDLVFSSDSRF   87 (321)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~~~~~~~   87 (321)
                      .|+++..++..|.+-|.|++|+|||+++|+++.||.+.+||=...        +.+..+   .+|+++|.+++|+||++.
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg--------e~vg~l~~~~aHkGsIfalsWsPDs~~  249 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--------EKVGELEDSDAHKGSIFALSWSPDSTQ  249 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc--------cEEEEecCCCCccccEEEEEECCCCce
Confidence            488889999999999999999999999999999999999975432        233333   489999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCccee-------------------------------------------eeeecCcccEEEEEEC
Q 020798           88 LVSASDDKTIRLWDVPTATCL-------------------------------------------KTLIGHTNYVFCVNFN  124 (321)
Q Consensus        88 l~~~~~d~~i~iwd~~~~~~~-------------------------------------------~~~~~~~~~v~~~~~~  124 (321)
                      +++++.|.+++|||+.+.+++                                           +.+.+|...|+++..+
T Consensus       250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~  329 (603)
T KOG0318|consen  250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS  329 (603)
T ss_pred             EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc
Confidence            999999999999998665432                                           1245899999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCEEEEEE-eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCcee-----------
Q 020798          125 PQSNMIVSGAFDETVRIWDVKTGKCLKVL-PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM-----------  192 (321)
Q Consensus       125 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----------  192 (321)
                      |++.+|++|+.||.|.-|+..++..-... ..|...|..++-+..+ .+++++.|.++++.++......           
T Consensus       330 ~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP  408 (603)
T KOG0318|consen  330 PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP  408 (603)
T ss_pred             CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCcccccceeecCCCc
Confidence            99999999999999999999888755443 5788899999877544 5778999999999876321100           


Q ss_pred             ee-------------------ecc--------CCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEE--EEeccCC
Q 020798          193 KT-------------------LID--------DENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILK--TYTGHTN  243 (321)
Q Consensus       193 ~~-------------------~~~--------~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~  243 (321)
                      +.                   ++.        .......+++++|+++.+++|+.|+.++||.+....+..  ....|..
T Consensus       409 ~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a  488 (603)
T KOG0318|consen  409 KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRA  488 (603)
T ss_pred             eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccC
Confidence            00                   000        011234578999999999999999999999998755432  3445655


Q ss_pred             ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEE-ecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccccC
Q 020798          244 SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK-LEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEKE  321 (321)
Q Consensus       244 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~~  321 (321)
                      ...+   ....||+.+||+|...+.+.+||+.+++.... +.=|...|++++|+|+..++|+||.|.  .|.||++++.
T Consensus       489 ~iT~---vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt--~Viiysv~kP  562 (603)
T KOG0318|consen  489 AITD---VAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT--NVIIYSVKKP  562 (603)
T ss_pred             CceE---EEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc--eEEEEEccCh
Confidence            5444   44568999999999999999999998876433 333999999999999999999999984  6999999863

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.2e-40  Score=248.85  Aligned_cols=251  Identities=25%  Similarity=0.479  Sum_probs=222.3

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      +.+..-...|..++|+|.|+++|.|+-|+...||++...+..  ......+.+.+|.+.+.++.|.+|+ .|+|++.|.+
T Consensus        91 haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~--g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~T  167 (343)
T KOG0286|consen   91 HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE--GNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMT  167 (343)
T ss_pred             eEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc--ccceeeeeecCccceeEEEEEcCCC-ceEecCCCce
Confidence            334445667999999999999999999999999998743221  1223456789999999999999865 6889999999


Q ss_pred             EEEEecCCcceeeeeecCcccEEEEEECC-CCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE
Q 020798           97 IRLWDVPTATCLKTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      ..+||+++++....+.+|.+.|.+++++| +++.|++|+.|+..++||++.+.+.+.|++|+..|.++.|.|+|.-|++|
T Consensus       168 CalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatG  247 (343)
T KOG0286|consen  168 CALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATG  247 (343)
T ss_pred             EEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeec
Confidence            99999999999999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeeeecc-CCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEe
Q 020798          176 SYDGLCRIWDASTGHCMKTLID-DENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV  254 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (321)
                      +.|+++++||++..+.+..+.. ....++++++|+..|++|++|..|.++.+||.-.++.+..+.+|.+.+.|+..   .
T Consensus       248 SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~---s  324 (343)
T KOG0286|consen  248 SDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV---S  324 (343)
T ss_pred             CCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE---C
Confidence            9999999999998776655533 23457899999999999999999999999999999999999999988766654   4


Q ss_pred             cCCeEEEEeCCCCeEEEEE
Q 020798          255 TNGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       255 ~~~~~l~~~~~dg~i~vwd  273 (321)
                      |||..+++|+.|.++|||.
T Consensus       325 ~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  325 PDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCCcEEEecchhHheeecC
Confidence            8999999999999999994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.7e-41  Score=286.48  Aligned_cols=273  Identities=29%  Similarity=0.568  Sum_probs=235.4

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      ...++|..|++|+++||.|-.|..|++|.+...         .+..++.-       .   +...+=+.+.|-.+.+.|.
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~---------kl~~lk~~-------~---~l~~~d~~sad~~~~~~D~  438 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK---------KLKKLKDA-------S---DLSNIDTESADVDVDMLDD  438 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchh---------hhccccch-------h---hhccccccccchhhhhccc
Confidence            357999999999999999999999999977521         12222211       1   1112334555656777777


Q ss_pred             CCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q 020798          103 PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR  182 (321)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  182 (321)
                      .+....+.+.+|.++|..+.|+|+.++|++|+.|+++|+|.+.+..+...+.+|..||+.+.|+|.|-+|++++.|++.+
T Consensus       439 ~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr  518 (707)
T KOG0263|consen  439 DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR  518 (707)
T ss_pred             cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence            77777778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEE
Q 020798          183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVS  262 (321)
Q Consensus       183 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (321)
                      +|.....++.+. ...+...+.++.|+|+..|+++|+.|.++++||+.+|..++.|.+|..++.++.   ..++|++|++
T Consensus       519 LWs~d~~~PlRi-faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~---~Sp~Gr~LaS  594 (707)
T KOG0263|consen  519 LWSTDHNKPLRI-FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALA---FSPCGRYLAS  594 (707)
T ss_pred             eeecccCCchhh-hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEE---EcCCCceEee
Confidence            999887665544 456777899999999999999999999999999999999999999998865543   3479999999


Q ss_pred             eCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          263 GSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      |+.||.|.+||+.+++++..+.+|.+.|.++.|+.+|..||+||.|  .+|++||..+
T Consensus       595 g~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D--nsV~lWD~~~  650 (707)
T KOG0263|consen  595 GDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD--NSVRLWDLTK  650 (707)
T ss_pred             cccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCC--CeEEEEEchh
Confidence            9999999999999999999999999999999999999999999965  6899999865

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.7e-40  Score=262.09  Aligned_cols=280  Identities=23%  Similarity=0.451  Sum_probs=245.0

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      ...|++++|+.+|+.||+|+.||.+++|+..         ...+..+..|+++|.++.|+..|.+|++++.|+++.+||.
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~---------G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~  305 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD---------GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA  305 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecC---------chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence            4689999999999999999999999999754         3456778899999999999999999999999999999999


Q ss_pred             CCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q 020798          103 PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR  182 (321)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  182 (321)
                      .+++....+.-|..+...+.|-.+ ..|++++.|+.|+++.+...+++.++.+|.++|.++.|+|.+.+|++++.|++++
T Consensus       306 ~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlk  384 (524)
T KOG0273|consen  306 HTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLK  384 (524)
T ss_pred             cCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeE
Confidence            999888888888887667777654 5789999999999999998899999999999999999999999999999999999


Q ss_pred             EEeCCCCceeeeeccCCCCCeEEEEEccCC---------CEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEE
Q 020798          183 IWDASTGHCMKTLIDDENPPVSFVKFSPNG---------KFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFS  253 (321)
Q Consensus       183 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  253 (321)
                      +|......+...+. .|...|..+.|+|+|         ..+++++.|+++++||+..+.++..+..|+.+++.+.+   
T Consensus       385 iWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvaf---  460 (524)
T KOG0273|consen  385 IWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAF---  460 (524)
T ss_pred             eeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEe---
Confidence            99977665555443 455567788898865         46889999999999999999999999999999887654   


Q ss_pred             ecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          254 VTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .++|+++|+|+.||.|.+|+.+++++++.+.+ .+.|..|.|+.+|+.|..+..  |+.+.+-|+.
T Consensus       461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~s--d~~vcvldlr  523 (524)
T KOG0273|consen  461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACAS--DGSVCVLDLR  523 (524)
T ss_pred             cCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEec--CCCceEEEec
Confidence            48999999999999999999999999998876 456999999999998887764  5778887764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.5e-40  Score=241.09  Aligned_cols=283  Identities=24%  Similarity=0.531  Sum_probs=234.0

Q ss_pred             CccccccCCcce--eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEE
Q 020798            3 SDQSLESFRPYT--LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLV   80 (321)
Q Consensus         3 ~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~   80 (321)
                      -|++|+.+..-+  ..++++.-...|..+...||++.||+++ ...|++||+..      ..+.|+..+.+|...|..+.
T Consensus        18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S------~np~Pv~t~e~h~kNVtaVg   90 (311)
T KOG0315|consen   18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNS------NNPNPVATFEGHTKNVTAVG   90 (311)
T ss_pred             CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccC------CCCCceeEEeccCCceEEEE
Confidence            356666666443  4455554566899999999999999987 56899999864      34458899999999999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE-EeCCCCC
Q 020798           81 FSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV-LPAHSDP  159 (321)
Q Consensus        81 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~  159 (321)
                      |..+|+++++|+.||+++|||++...+.+. ..|.++|.++..+|+-..|++|..+|.|++||+....+... ++....+
T Consensus        91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~  169 (311)
T KOG0315|consen   91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS  169 (311)
T ss_pred             EeecCeEEEecCCCceEEEEeccCcccchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence            999999999999999999999999766554 45789999999999999999999999999999988765543 4556678


Q ss_pred             eeEEEEccCCCEEEEEeCCCeEEEEeCCCCceee-----eeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC-c
Q 020798          160 VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK-----TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG-K  233 (321)
Q Consensus       160 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~-~  233 (321)
                      +.++...|+|.+++.+...|.+++|++.+.....     ..+..+...+..+.++|++++|++++.|.+++||+..+. +
T Consensus       170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k  249 (311)
T KOG0315|consen  170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK  249 (311)
T ss_pred             eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence            9999999999999999999999999986543221     123345667888999999999999999999999999887 5


Q ss_pred             EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEec
Q 020798          234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASH  296 (321)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  296 (321)
                      ....+++|+.-  ...+.|+ .|++||++|+.|+.+++|++..++.+..+.+|..+..+++.+
T Consensus       250 le~~l~gh~rW--vWdc~FS-~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  250 LELVLTGHQRW--VWDCAFS-ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eEEEeecCCce--EEeeeec-cCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            56667777643  3444444 689999999999999999999999999999999888887764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.1e-39  Score=252.69  Aligned_cols=291  Identities=19%  Similarity=0.362  Sum_probs=241.8

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      .-...+.+|...|.+++.+|+.++++||+.|....+|+....        .....+++|+..|.++.|+.+|.+||||..
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--------e~~~eltgHKDSVt~~~FshdgtlLATGdm  126 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--------EFAGELTGHKDSVTCCSFSHDGTLLATGDM  126 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--------cceeEecCCCCceEEEEEccCceEEEecCC
Confidence            345778999999999999999999999999999999987542        245678899999999999999999999999


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEE
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV  173 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  173 (321)
                      +|.|+||...++.....+...-+.+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++-.|.|+|+.++
T Consensus       127 sG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  127 SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             CccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence            99999999999987777765667788899999999999999999999999998888889999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeeeeccCCCC----------------------------------------------------
Q 020798          174 TSSYDGLCRIWDASTGHCMKTLIDDENP----------------------------------------------------  201 (321)
Q Consensus       174 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~----------------------------------------------------  201 (321)
                      ++..||+|++|++.++++...+......                                                    
T Consensus       207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~  286 (399)
T KOG0296|consen  207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD  286 (399)
T ss_pred             EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence            9999999999999988766554311000                                                    


Q ss_pred             -CeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEE
Q 020798          202 -PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV  280 (321)
Q Consensus       202 -~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (321)
                       .+..+.++..=.+.++|+.||+|.|||+...++..... |...+  +...|. + ..+|++++.+|.|+.||.+++++.
T Consensus       287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V--~~l~w~-~-t~~l~t~c~~g~v~~wDaRtG~l~  361 (399)
T KOG0296|consen  287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGV--TKLKWL-N-TDYLLTACANGKVRQWDARTGQLK  361 (399)
T ss_pred             hhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCce--EEEEEc-C-cchheeeccCceEEeeeccccceE
Confidence             01112222233456888899999999998776655543 44443  333333 2 678999999999999999999999


Q ss_pred             EEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          281 QKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       281 ~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ..+.||..+|.+++++|++++++|+|.|  ++.+++...
T Consensus       362 ~~y~GH~~~Il~f~ls~~~~~vvT~s~D--~~a~VF~v~  398 (399)
T KOG0296|consen  362 FTYTGHQMGILDFALSPQKRLVVTVSDD--NTALVFEVP  398 (399)
T ss_pred             EEEecCchheeEEEEcCCCcEEEEecCC--CeEEEEecC
Confidence            9999999999999999999999999954  678887653

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-40  Score=245.88  Aligned_cols=248  Identities=29%  Similarity=0.566  Sum_probs=213.3

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      ..+.++||...|..+..++||++.++++.|+.+++||+..        ..+.+.|.+|...|.+++|++|.+.+++|+.|
T Consensus        55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~--------g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD  126 (315)
T KOG0279|consen   55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT--------GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD  126 (315)
T ss_pred             eeeeeeccceEecceEEccCCceEEeccccceEEEEEecC--------CcEEEEEEecCCceEEEEecCCCceeecCCCc
Confidence            5678899999999999999999999999999999999864        24678899999999999999999999999999


Q ss_pred             CcEEEEecCCcceeeeeec--CcccEEEEEECCC--CCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC
Q 020798           95 KTIRLWDVPTATCLKTLIG--HTNYVFCVNFNPQ--SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT  170 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (321)
                      .+|++|+...... .++..  +.+.|.|+.|+|+  ...|++++.|+++++||+++-+....+.+|...++.++++|||.
T Consensus       127 kTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs  205 (315)
T KOG0279|consen  127 KTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS  205 (315)
T ss_pred             ceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC
Confidence            9999999866543 33332  3788999999998  56899999999999999999998889999999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc-------CC
Q 020798          171 MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH-------TN  243 (321)
Q Consensus       171 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~  243 (321)
                      +.++|+.||.+.+||++.++.+..+  ++...|..++|+|+.-+|+.+. +..|+|||+.++..+..+...       ..
T Consensus       206 lcasGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~  282 (315)
T KOG0279|consen  206 LCASGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAG  282 (315)
T ss_pred             EEecCCCCceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccC
Confidence            9999999999999999998876554  4567799999999987776655 445999999998877766432       12


Q ss_pred             ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          244 SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       244 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      ...|++..++ .+|..|++|-.|+.|++|.+.
T Consensus       283 ~~~clslaws-~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  283 DPICLSLAWS-ADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             CcEEEEEEEc-CCCcEEEeeecCCcEEEEEee
Confidence            4567765554 689999999999999999975

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.7e-38  Score=292.15  Aligned_cols=292  Identities=20%  Similarity=0.381  Sum_probs=233.3

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-CCEEEEEeCCCcE
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-SRFLVSASDDKTI   97 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~d~~i   97 (321)
                      +..|...|.+++|+|+|++||+|+.|+.|++|++............+...+. +...+.+++|++. +++|++++.||.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            3458999999999999999999999999999987542211111111222333 3457899999874 7899999999999


Q ss_pred             EEEecCCcceeeeeecCcccEEEEEECC-CCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEc-cCCCEEEEE
Q 020798           98 RLWDVPTATCLKTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFN-RDGTMIVTS  175 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~  175 (321)
                      ++||+.+++.+..+.+|...|++++|+| ++.+|++|+.|+.|++||++++..+..+..+ ..+.++.|+ +++..+++|
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence            9999999988888999999999999997 6889999999999999999998888777654 578899995 568899999


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCC------CcEEEEEeccCCceeEEE
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST------GKILKTYTGHTNSKYCIS  249 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~~~~~~  249 (321)
                      +.|+.|++||+++..........+...+..+.|. ++.++++++.|+.|++||++.      .+.+..+.+|.....++.
T Consensus       637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~  715 (793)
T PLN00181        637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG  715 (793)
T ss_pred             eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence            9999999999987653222234566789999997 678999999999999999874      356778888876554433


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEE-------------ecCCCCCeEEEEecCCCceEEEEeecCCccEEEc
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK-------------LEGHTDPVISVASHPTENIIASGALDNDRTVKIW  316 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------------~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw  316 (321)
                         ..+++.+|++|+.|+.|++|+......+..             ...|...|.+++|+|++.+|++|+.  +|.|+||
T Consensus       716 ---~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~--dG~I~i~  790 (793)
T PLN00181        716 ---LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANS--TGNIKIL  790 (793)
T ss_pred             ---EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecC--CCcEEEE
Confidence               346789999999999999999865533211             1234567999999999999999984  5899999


Q ss_pred             cc
Q 020798          317 TQ  318 (321)
Q Consensus       317 ~~  318 (321)
                      ++
T Consensus       791 ~~  792 (793)
T PLN00181        791 EM  792 (793)
T ss_pred             ec
Confidence            86

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.8e-41  Score=258.62  Aligned_cols=308  Identities=29%  Similarity=0.520  Sum_probs=257.1

Q ss_pred             ccccCCcceeeeecc-CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC
Q 020798            6 SLESFRPYTLTQTLN-GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD   84 (321)
Q Consensus         6 ~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~   84 (321)
                      +.+..-|..+.+..+ |.+.-+.|..|||||+||++|+.||.+.+|+.................+--+.+.|.|+.|+.|
T Consensus       195 ~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD  274 (508)
T KOG0275|consen  195 QEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD  274 (508)
T ss_pred             hHhhhchHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc
Confidence            444555666655544 5566788999999999999999999999998765433222223333455568899999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeee-cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEE
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLI-GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAV  163 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  163 (321)
                      ...|++|+.||.|++|.+.++.|++.+. +|+..|.|+.|+.|+..+++++.|.++++.-+++|++++.+.+|...|+..
T Consensus       275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a  354 (508)
T KOG0275|consen  275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA  354 (508)
T ss_pred             HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccce
Confidence            9999999999999999999999998885 899999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC-CCCCeEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEEEEecc
Q 020798          164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD-ENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYSTGKILKTYTGH  241 (321)
Q Consensus       164 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  241 (321)
                      .|.++|..+++++.||++++|+..+.+|..++... ...+++.+..-| +-..++++...+++.|.++. |+.++++...
T Consensus       355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSG  433 (508)
T KOG0275|consen  355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSG  433 (508)
T ss_pred             EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccC
Confidence            99999999999999999999999999888776432 345677766666 44678888888999999975 6777877543


Q ss_pred             CC-ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          242 TN-SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       242 ~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      .. ....+.++ ..|.|.++.+.++|+.++.|.+.++++...+.-|...|..++.||..+.||+=+  +||.+++|.
T Consensus       434 kREgGdFi~~~-lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYs--EDgllKLWk  507 (508)
T KOG0275|consen  434 KREGGDFINAI-LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYS--EDGLLKLWK  507 (508)
T ss_pred             CccCCceEEEE-ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhc--ccchhhhcC
Confidence            22 22234333 347899999999999999999999999999999999999999999999999877  568999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.7e-38  Score=265.68  Aligned_cols=288  Identities=24%  Similarity=0.483  Sum_probs=250.5

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC-CcE
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD-KTI   97 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d-~~i   97 (321)
                      +......|++.+|++.-+.|++|-..|...+|.+.+.        ..+..+.--...|..++|+..|.+|+.|+.. |++
T Consensus       261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f--------~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQL  332 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF--------NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQL  332 (893)
T ss_pred             ecccccceeeeeccCCceEEEEEecCCeeEEEecCCc--------eEEEEeecccceeeEEEecccCCEEEEcCCccceE
Confidence            4444578999999999999999999999999976432        2344444445779999999999999988654 899


Q ss_pred             EEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC
Q 020798           98 RLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY  177 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  177 (321)
                      -+|+..+...+...++|...+.+++++|||.++++|+.||.|++||.+++-|..++..|...|+.+.|+..++.+++.+-
T Consensus       333 lVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL  412 (893)
T KOG0291|consen  333 LVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL  412 (893)
T ss_pred             EEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeec
Confidence            99999998888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCC-eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecC
Q 020798          178 DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN-TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       178 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (321)
                      ||+|+.||+...++.+++..+......+++.+|.|..+.+|+.|. .|.+|++++|+++..+.+|.+++.++..   .+.
T Consensus       413 DGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f---~~~  489 (893)
T KOG0291|consen  413 DGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF---SPD  489 (893)
T ss_pred             CCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE---ccc
Confidence            999999999988888888766666678899999999998888775 7999999999999999999998766543   467


Q ss_pred             CeEEEEeCCCCeEEEEEcccce-EEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          257 GKYIVSGSEDSCVYLWELQSRK-VVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +..|++|+.|.+||+||+-... .+..+. +...+++++|+|+|+.||++..|  |.|.+||.+.
T Consensus       490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTld--gqItf~d~~~  551 (893)
T KOG0291|consen  490 GSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLD--GQITFFDIKE  551 (893)
T ss_pred             cCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEec--ceEEEEEhhh
Confidence            9999999999999999996552 333343 56689999999999999999875  7999999863

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.4e-38  Score=262.48  Aligned_cols=299  Identities=26%  Similarity=0.532  Sum_probs=251.0

Q ss_pred             cCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEE
Q 020798            9 SFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL   88 (321)
Q Consensus         9 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l   88 (321)
                      .+-|+.+.+.+.||...|.++.|+.|.++|++|+.|..+++|++.....      .....+.+|++.|-..-|..+...+
T Consensus       131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~------~~~~~l~gHkd~VvacfF~~~~~~l  204 (893)
T KOG0291|consen  131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN------LFTYALNGHKDYVVACFFGANSLDL  204 (893)
T ss_pred             ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc------cceEeccCCCcceEEEEeccCcceE
Confidence            5778999999999999999999999999999999999999998875432      2345678999999999999999899


Q ss_pred             EEEeCCCcEEEEecCC-----------------------cce--------------------------------------
Q 020798           89 VSASDDKTIRLWDVPT-----------------------ATC--------------------------------------  107 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~-----------------------~~~--------------------------------------  107 (321)
                      ++.+.||.+.+|....                       ++.                                      
T Consensus       205 ~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgF  284 (893)
T KOG0291|consen  205 YTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGF  284 (893)
T ss_pred             EEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEe
Confidence            9999999999997640                       000                                      


Q ss_pred             ---------------eeeeecCcccEEEEEECCCCCEEEEeeCC-CcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCE
Q 020798          108 ---------------LKTLIGHTNYVFCVNFNPQSNMIVSGAFD-ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTM  171 (321)
Q Consensus       108 ---------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  171 (321)
                                     ++.+.-....|..++|+..|.+|+.|+.. |.+-+|+.++...+...++|...+++++++|||.+
T Consensus       285 ssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~  364 (893)
T KOG0291|consen  285 SSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQL  364 (893)
T ss_pred             cCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcE
Confidence                           00000011234556667778888776543 78888888888878888899999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeE
Q 020798          172 IVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST  251 (321)
Q Consensus       172 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  251 (321)
                      +++|+.||.|++||...+.|..++ ..|...++.+.|+..|+.+++++-||+|+.||+...+..+++......  ..++.
T Consensus       365 iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~--Qfscv  441 (893)
T KOG0291|consen  365 IATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI--QFSCV  441 (893)
T ss_pred             EEeccCCCcEEEEeccCceEEEEe-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce--eeeEE
Confidence            999999999999999999998886 467788999999999999999999999999999999888888765432  23444


Q ss_pred             EEecCCeEEEEeCCCC-eEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          252 FSVTNGKYIVSGSEDS-CVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       252 ~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      ...+.|..+.+|+.|. .|.||++++|+++..+.||.+||.+++|+|++..||+||+|  .+|++||.
T Consensus       442 avD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--kTVRiW~i  507 (893)
T KOG0291|consen  442 AVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--KTVRIWDI  507 (893)
T ss_pred             EEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--ceEEEEEe
Confidence            5557799999999887 59999999999999999999999999999999999999987  68999986

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-38  Score=237.77  Aligned_cols=288  Identities=25%  Similarity=0.394  Sum_probs=237.2

Q ss_pred             eccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcE
Q 020798           18 TLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTI   97 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i   97 (321)
                      .|+||.++++.+.|+.+|.+|.+|+.|....+|-        ..+.+.+-++.+|.+.|.++..+.+.+++++|+.|.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~--------s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~   76 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWY--------SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTA   76 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEE--------ecCCceeeeecCCCceEEEEEecCCcceeeecccccee
Confidence            4789999999999999999999999999999993        23455677899999999999999999999999999999


Q ss_pred             EEEecCCcceeeeeecCcccEEEEEECCCCCEEEEee-----CCCcEEEEecC-------CCEEEEEEeCCCCCeeEEEE
Q 020798           98 RLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA-----FDETVRIWDVK-------TGKCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~  165 (321)
                      ++||+++++++..+. ....|..+.|+++|++++.+.     ..+.|.++|++       ..++...++.+...++.+-|
T Consensus        77 kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W  155 (327)
T KOG0643|consen   77 KLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW  155 (327)
T ss_pred             EEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence            999999999887765 567899999999999887654     34679999987       34567778888999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCce
Q 020798          166 NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK  245 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  245 (321)
                      .|-++.+++|..+|.|..||+++++........+...|+.+.++++..++++++.|.+-++||..+.+.++++.... ++
T Consensus       156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~-Pv  234 (327)
T KOG0643|consen  156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER-PV  234 (327)
T ss_pred             cccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc-cc
Confidence            99999999999999999999999877666666677789999999999999999999999999999999999986532 22


Q ss_pred             eEEEeEEEecCCeEEEEe-CCCC-------------eEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCc
Q 020798          246 YCISSTFSVTNGKYIVSG-SEDS-------------CVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR  311 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~-~~dg-------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~  311 (321)
                      .+   ....|...+++.| +++.             .-++|++-..+.+.++++|-+||++++|||+|...++|++  ||
T Consensus       235 N~---aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGE--DG  309 (327)
T KOG0643|consen  235 NT---AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGE--DG  309 (327)
T ss_pred             cc---eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCC--Cc
Confidence            22   2222333444433 3332             1233444444567788999999999999999999999995  58


Q ss_pred             cEEEccccc
Q 020798          312 TVKIWTQEK  320 (321)
Q Consensus       312 ~i~iw~~~~  320 (321)
                      .|++...++
T Consensus       310 ~VR~h~Fd~  318 (327)
T KOG0643|consen  310 YVRLHHFDS  318 (327)
T ss_pred             eEEEEEecc
Confidence            888876553

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.4e-39  Score=268.41  Aligned_cols=303  Identities=26%  Similarity=0.445  Sum_probs=257.2

Q ss_pred             CCCccccccC--CcceeeeeccCCcccEEEEEE-CCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEE
Q 020798            1 MSSDQSLESF--RPYTLTQTLNGHLRAISSVKF-SHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVS   77 (321)
Q Consensus         1 ~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~-s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~   77 (321)
                      ++++|.|..+  +.-++.+.+-|-.+.|..++| .|+.++||++++.+.+++|++.+..         -+.+.+|+..|.
T Consensus       299 vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~---------c~ii~GH~e~vl  369 (775)
T KOG0319|consen  299 VTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY---------CQIIPGHTEAVL  369 (775)
T ss_pred             EEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc---------eEEEeCchhhee
Confidence            3567777777  555677778888999999997 5888999999999999999765422         236789999999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCcc----eeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEE--
Q 020798           78 DLVFSSDSRFLVSASDDKTIRLWDVPTAT----CLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCL--  150 (321)
Q Consensus        78 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~--  150 (321)
                      ++....+|-+|++|+.|.++++|.++.+.    ++....+|.+.|.+++++..+ .+|++++.|+++++|++...+..  
T Consensus       370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~  449 (775)
T KOG0319|consen  370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF  449 (775)
T ss_pred             eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence            99977788899999999999999885443    344567899999999997654 57899999999999998762211  


Q ss_pred             -------EEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCe
Q 020798          151 -------KVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT  223 (321)
Q Consensus       151 -------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~  223 (321)
                             .....|...|++++++|+..++++|++|.+.++|+++....... +.+|...+.++.|+|..+.+++++.|++
T Consensus       450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v-LsGH~RGvw~V~Fs~~dq~laT~SgD~T  528 (775)
T KOG0319|consen  450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV-LSGHTRGVWCVSFSKNDQLLATCSGDKT  528 (775)
T ss_pred             cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE-eeCCccceEEEEeccccceeEeccCCce
Confidence                   12346899999999999999999999999999999996655444 4577888999999999999999999999


Q ss_pred             EEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEE
Q 020798          224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA  303 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  303 (321)
                      |+||.+.+...++++.+|...+...  .|. .+|..|++++.||-+++|++.+..++..+..|.+.|++++.+|...+++
T Consensus       529 vKIW~is~fSClkT~eGH~~aVlra--~F~-~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~  605 (775)
T KOG0319|consen  529 VKIWSISTFSCLKTFEGHTSAVLRA--SFI-RNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFV  605 (775)
T ss_pred             EEEEEeccceeeeeecCccceeEee--eee-eCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeE
Confidence            9999999999999999998775443  333 5799999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCccEEEccc
Q 020798          304 SGALDNDRTVKIWTQ  318 (321)
Q Consensus       304 s~~~d~~~~i~iw~~  318 (321)
                      ||+  +||.|.+|.-
T Consensus       606 tgg--~Dg~i~~wkD  618 (775)
T KOG0319|consen  606 TGG--GDGRIIFWKD  618 (775)
T ss_pred             ecC--CCeEEEEeec
Confidence            998  5689999964

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=9.4e-39  Score=236.11  Aligned_cols=285  Identities=26%  Similarity=0.470  Sum_probs=242.3

Q ss_pred             eeccCCcccEEEEEECC---CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           17 QTLNGHLRAISSVKFSH---DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~---~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      ....||.++|-.++|||   +|-+|++++.|+.-.+-        .......+-++.+|++.|.+...+.+....++++.
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr--------~g~tgdwigtfeghkgavw~~~l~~na~~aasaaa   79 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLR--------NGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAA   79 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhc--------cCCCCCcEEeeeccCcceeeeecCchhhhhhhhcc
Confidence            34579999999999985   88899999999876543        12234457789999999999999998888899999


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE-EEEEEeCCCCCeeEEEEccCCCEE
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK-CLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      |-+-++||.-++..+.++. |.-.|..++|+.|.++|++|+.+..+++||++..+ +...+..|...|..+-|....+.+
T Consensus        80 dftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~i  158 (334)
T KOG0278|consen   80 DFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCI  158 (334)
T ss_pred             cchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceE
Confidence            9999999999998777764 88889999999999999999999999999997654 456678899999999999988899


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEE
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF  252 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  252 (321)
                      +++..|++||+||.+++..++.+..  ..+++++.++++|++|.++ ..+.|.+||..+-.+++.+.....    +....
T Consensus       159 LSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n----V~SAS  231 (334)
T KOG0278|consen  159 LSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN----VESAS  231 (334)
T ss_pred             EeeccCCceEEEEeccCcEEEEEec--CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc----ccccc
Confidence            9999999999999999998888754  4568899999999987664 456799999999888888754322    33333


Q ss_pred             EecCCeEEEEeCCCCeEEEEEcccceEEEEe-cCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKL-EGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ..|+...+++|+.|..++.||..+++.+..+ ++|.+||.++.|+|+|...|+||+  ||+|+||...
T Consensus       232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE--DGTirlWQt~  297 (334)
T KOG0278|consen  232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE--DGTIRLWQTT  297 (334)
T ss_pred             ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC--CceEEEEEec
Confidence            3466788999999999999999999988875 899999999999999999999995  5899999864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-36  Score=227.94  Aligned_cols=294  Identities=28%  Similarity=0.494  Sum_probs=241.7

Q ss_pred             ccCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCE
Q 020798            8 ESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRF   87 (321)
Q Consensus         8 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~   87 (321)
                      .+++|.+..+   .-...|+++.|+++|..|++++.|..+++||....        ..+..+..++-++..+.|......
T Consensus         2 ~s~~~ak~f~---~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--------~~~~ti~skkyG~~~~~Fth~~~~   70 (311)
T KOG1446|consen    2 RSFRPAKVFR---ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--------KQVKTINSKKYGVDLACFTHHSNT   70 (311)
T ss_pred             cccccccccc---cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--------ceeeEeecccccccEEEEecCCce
Confidence            3455554333   34568999999999999999999999999987542        334556666778888899877666


Q ss_pred             EEEEeC--CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEE
Q 020798           88 LVSASD--DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus        88 l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  165 (321)
                      ++.++.  |.+|+..++.+++.++.+.||...|..++.+|-++.+++++.|++|++||++..++.-.+.....+  .++|
T Consensus        71 ~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~Af  148 (311)
T KOG1446|consen   71 VIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAF  148 (311)
T ss_pred             EEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeE
Confidence            766665  889999999999999999999999999999999999999999999999999988877766554444  4789


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCC--ceeeee--ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc
Q 020798          166 NRDGTMIVTSSYDGLCRIWDASTG--HCMKTL--IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH  241 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  241 (321)
                      .|+|-+++++.....|++||++.-  .+...+  ........+.+.|+|+|++++.++..+.+++.|.-+|..+..+.++
T Consensus       149 Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~  228 (311)
T KOG1446|consen  149 DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY  228 (311)
T ss_pred             CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence            999999999988889999999853  122222  2233456788999999999999999999999999999999998876


Q ss_pred             CCce-eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC-CCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          242 TNSK-YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG-HTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       242 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .... ..+.+.+ .||++++++|+.||+|.+|+++++..+..+.+ +..++.++.|+|...++|+++    ..+-+|-.+
T Consensus       229 ~~~~~~~~~a~f-tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~----s~l~fw~p~  303 (311)
T KOG1446|consen  229 PNAGNLPLSATF-TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS----SNLVFWLPD  303 (311)
T ss_pred             cCCCCcceeEEE-CCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC----ceEEEEecc
Confidence            6543 2344444 47999999999999999999999999999988 689999999999999999975    468888654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.1e-38  Score=264.64  Aligned_cols=211  Identities=35%  Similarity=0.619  Sum_probs=195.9

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      ....++|-||.++|...+|+|+.++|++||+|+++++|.+...        ..+-.+.+|..+|.++.|+|-|-++|+++
T Consensus       441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--------s~~V~y~GH~~PVwdV~F~P~GyYFatas  512 (707)
T KOG0263|consen  441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--------SCLVIYKGHLAPVWDVQFAPRGYYFATAS  512 (707)
T ss_pred             CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccc--------eeEEEecCCCcceeeEEecCCceEEEecC
Confidence            3456779999999999999999999999999999999988642        34556789999999999999999999999


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      .|++.++|......+++.+.+|-+.+.|+.|+|+.+++++|+.|.++++||+.+|..++.+.+|.++|++++|+|+|++|
T Consensus       513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L  592 (707)
T KOG0263|consen  513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL  592 (707)
T ss_pred             CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG  232 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~  232 (321)
                      ++|+.||.|.+||+.++..+..+..+ ...+..+.|+.+|..|++++.|++|++||+...
T Consensus       593 aSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  593 ASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             eecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999999999999887776654 778999999999999999999999999998653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.2e-37  Score=261.33  Aligned_cols=259  Identities=33%  Similarity=0.602  Sum_probs=213.5

Q ss_pred             eeeeecc-CCcccEEEEEECCCCCEEEEecCCceEEEeeccccC----------------------------C-------
Q 020798           14 TLTQTLN-GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSIS----------------------------N-------   57 (321)
Q Consensus        14 ~~~~~~~-~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~----------------------------~-------   57 (321)
                      ...+.+. +|.+.|.++.|||||+|||+|+.|+.|+||.+..-+                            .       
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            3446667 999999999999999999999999999999876500                            0       


Q ss_pred             -----------------CCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEE
Q 020798           58 -----------------SDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFC  120 (321)
Q Consensus        58 -----------------~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  120 (321)
                                       .-.....|++.+.||.+.|.+|.|+.+ ++|++++.|.+|++|++...+|++.+. |.+.|+|
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc  414 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC  414 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence                             000112456778999999999999976 489999999999999999999988765 9999999


Q ss_pred             EEECC-CCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec---
Q 020798          121 VNFNP-QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI---  196 (321)
Q Consensus       121 ~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---  196 (321)
                      ++|+| |.++|++|+-|+.|++|++...+...-... ..-|++++|.|+|+..+.|+.+|.+++|+....+......   
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence            99999 678999999999999999987765554444 4789999999999999999999999999998765543221   


Q ss_pred             ----cCCCCCeEEEEEccCCC-EEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEE
Q 020798          197 ----DDENPPVSFVKFSPNGK-FILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYL  271 (321)
Q Consensus       197 ----~~~~~~~~~~~~~~~g~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v  271 (321)
                          ......|+.+.|.|... .+++.+.|..|+|||.++.+++..|++.......+.+.|.. ||++|++++.|..|++
T Consensus       494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYi  572 (712)
T KOG0283|consen  494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYI  572 (712)
T ss_pred             ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEE
Confidence                11123689999987543 57778999999999999999999999887776667777765 9999999999999999


Q ss_pred             EEccc
Q 020798          272 WELQS  276 (321)
Q Consensus       272 wd~~~  276 (321)
                      |++..
T Consensus       573 W~~~~  577 (712)
T KOG0283|consen  573 WKNDS  577 (712)
T ss_pred             EeCCC
Confidence            99844

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-37  Score=261.25  Aligned_cols=288  Identities=27%  Similarity=0.508  Sum_probs=249.9

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEE
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRL   99 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~i   99 (321)
                      +.-...|..++|+|....++++--.|.|.+||..        -...+..|..|+++|+.+.|+|++.++++|++|-.|++
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYR--------M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkV   77 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYR--------MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKV   77 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhh--------hhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEE
Confidence            3445678889999999999999999999999763        23457788999999999999999999999999999999


Q ss_pred             EecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC
Q 020798          100 WDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG  179 (321)
Q Consensus       100 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  179 (321)
                      |+....+++.++.+|-++|..+.|++.--++++++.|.+|++|+.++++++..+.+|...|++..|+|....+++++-|.
T Consensus        78 WnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ  157 (1202)
T KOG0292|consen   78 WNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ  157 (1202)
T ss_pred             EecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCc----------------------------eeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 020798          180 LCRIWDASTGH----------------------------CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST  231 (321)
Q Consensus       180 ~i~~~d~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~  231 (321)
                      +||+||+..-+                            .++.+..+|...|+.++|+|.-..+++|+.|..|++|.+..
T Consensus       158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence            99999974210                            12234456777899999999999999999999999999876


Q ss_pred             CcE--EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecC
Q 020798          232 GKI--LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDN  309 (321)
Q Consensus       232 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~  309 (321)
                      .+.  +.+..+|.+.+.+   ..+.+...++++.++|++|||||+..+..++.++...++-+.++-||..+++|.|.   
T Consensus       238 tKaWEvDtcrgH~nnVss---vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH---  311 (1202)
T KOG0292|consen  238 TKAWEVDTCRGHYNNVSS---VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH---  311 (1202)
T ss_pred             ccceeehhhhcccCCcce---EEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec---
Confidence            553  4456678777554   34457788999999999999999999999999887778899999999999999985   


Q ss_pred             CccEEEcccccC
Q 020798          310 DRTVKIWTQEKE  321 (321)
Q Consensus       310 ~~~i~iw~~~~~  321 (321)
                      |+-+.+|.++.|
T Consensus       312 DsGm~VFkleRE  323 (1202)
T KOG0292|consen  312 DSGMIVFKLERE  323 (1202)
T ss_pred             CCceEEEEEccc
Confidence            344667766643

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9e-38  Score=242.11  Aligned_cols=253  Identities=30%  Similarity=0.527  Sum_probs=224.6

Q ss_pred             cccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           65 PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        65 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      ..+.+.+|..+|..+.|+|+-..+++++.|.+|++||..++++...+++|...+..+.|+..|+++++++.|-.+++||.
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF  179 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-CEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCe
Q 020798          145 KT-GKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT  223 (321)
Q Consensus       145 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~  223 (321)
                      .+ .++++.+..|+..|.+++|-|.|.++++++.|.+|+.|++.++.++..+.. +..-+..++.+.||..+++++.|.+
T Consensus       180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~-h~ewvr~v~v~~DGti~As~s~dqt  258 (406)
T KOG0295|consen  180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG-HSEWVRMVRVNQDGTIIASCSNDQT  258 (406)
T ss_pred             HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccC-chHhEEEEEecCCeeEEEecCCCce
Confidence            76 456677788999999999999999999999999999999999999988754 4457888999999999999999999


Q ss_pred             EEEEeCCCCcEEEEEeccCCceeEEEeEEEe------------cCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeE
Q 020798          224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSV------------TNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVI  291 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~  291 (321)
                      +++|-+.+++....+..|..++-|+......            ..++++.+++.|++|++||+.++.++.++.+|.+.|.
T Consensus       259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr  338 (406)
T KOG0295|consen  259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR  338 (406)
T ss_pred             EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence            9999999987666677777666665443110            1246999999999999999999999999999999999


Q ss_pred             EEEecCCCceEEEEeecCCccEEEccccc
Q 020798          292 SVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       292 ~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +++|+|.|++|+++.  +|+++++||++.
T Consensus       339 ~~af~p~Gkyi~Sca--DDktlrvwdl~~  365 (406)
T KOG0295|consen  339 GVAFSPGGKYILSCA--DDKTLRVWDLKN  365 (406)
T ss_pred             eeEEcCCCeEEEEEe--cCCcEEEEEecc
Confidence            999999999999997  468999999875

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=4.9e-37  Score=233.79  Aligned_cols=300  Identities=26%  Similarity=0.502  Sum_probs=241.4

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCC---------CCCC-CcccccccccccEEEEEECCCCC
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSD---------STPP-SPLQKFTGHEQGVSDLVFSSDSR   86 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~---------~~~~-~~~~~~~~h~~~i~~~~~~~~~~   86 (321)
                      ..+..|+.++.+.+|||||.++|+|+.|..|++.|++++....         .... ..++++-.|...|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            4567899999999999999999999999999999998543211         1111 23567778999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCcceeeee--ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE---eCCCCCee
Q 020798           87 FLVSASDDKTIRLWDVPTATCLKTL--IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL---PAHSDPVT  161 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~  161 (321)
                      .|++|+.|++|+++|+.+....+.+  ......+.++.|+|.|.+|+.|....++++||+++.++...-   ..|.+.|+
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~  265 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT  265 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence            9999999999999999765433322  224567999999999999999999999999999988765432   46888999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCC-CCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec
Q 020798          162 AVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDEN-PPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG  240 (321)
Q Consensus       162 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~  240 (321)
                      ++.+++.+++.++++.||.|++||--+++|+..+...|+ ..|.+..|..+|+++++.+.|..+++|.+.+++.+..+.+
T Consensus       266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG  345 (430)
T ss_pred             EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence            999999999999999999999999988999888766554 5688899999999999999999999999999999999976


Q ss_pred             cCCce---eEEEeEEEecCCeEEEEe-CCCCeEEEEEcccceEEEEe-cCCCCCeEEEEecCCCceEEEEeecCCccEEE
Q 020798          241 HTNSK---YCISSTFSVTNGKYIVSG-SEDSCVYLWELQSRKVVQKL-EGHTDPVISVASHPTENIIASGALDNDRTVKI  315 (321)
Q Consensus       241 ~~~~~---~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~i  315 (321)
                      .....   ......|. ....+++.- -..+.+.-||.++...+..+ -+|.++++.+..+|.+.-+.++|.  |-++++
T Consensus       346 Ag~tgrq~~rtqAvFN-htEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd--D~raRF  422 (430)
T KOG0640|consen  346 AGTTGRQKHRTQAVFN-HTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD--DFRARF  422 (430)
T ss_pred             CCcccchhhhhhhhhc-CccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecc--cceeee
Confidence            52111   11112233 334555443 34567899999887554433 479999999999999999999984  578999


Q ss_pred             cccc
Q 020798          316 WTQE  319 (321)
Q Consensus       316 w~~~  319 (321)
                      |.-.
T Consensus       423 Wyrr  426 (430)
T KOG0640|consen  423 WYRR  426 (430)
T ss_pred             eeec
Confidence            9643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.4e-35  Score=240.10  Aligned_cols=298  Identities=19%  Similarity=0.357  Sum_probs=248.4

Q ss_pred             CCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE
Q 020798           10 FRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV   89 (321)
Q Consensus        10 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~   89 (321)
                      ++.......+.+|..+++...|||.|.|+|+|...|.|+||+....+.      ....+++.-.++|.+|+|+.++++|+
T Consensus        46 i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h------iLKnef~v~aG~I~Di~Wd~ds~RI~  119 (603)
T KOG0318|consen   46 IDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH------ILKNEFQVLAGPIKDISWDFDSKRIA  119 (603)
T ss_pred             CCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce------eeeeeeeecccccccceeCCCCcEEE
Confidence            334445677889999999999999999999999999999998754211      11223444568899999999999988


Q ss_pred             EEeCC----CcEEEEecCCcceeeeeecCcccEEEEEECCCCC-EEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEE
Q 020798           90 SASDD----KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVD  164 (321)
Q Consensus        90 ~~~~d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  164 (321)
                      +.+..    |.+.+||  ++...-.+.+|+..+.+++|-|..- ++++|+.|+.|.+|+-..-+-...+..|..-|.++.
T Consensus       120 avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR  197 (603)
T KOG0318|consen  120 AVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR  197 (603)
T ss_pred             EEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence            76543    2455565  5666778899999999999998654 599999999999998766666667788999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeeeec--cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccC
Q 020798          165 FNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI--DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT  242 (321)
Q Consensus       165 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  242 (321)
                      |+|||++|++++.||.+.+||-.+++.+..+.  ..|...|..++|+||++.+++++.|.+++|||+.+.++++++....
T Consensus       198 ysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~  277 (603)
T KOG0318|consen  198 YSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS  277 (603)
T ss_pred             ECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC
Confidence            99999999999999999999999998877764  2466789999999999999999999999999999999999886543


Q ss_pred             C-ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          243 N-SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       243 ~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      . ....+.+.|.   ...|++-+.+|.|.+++......++.+.||...|++++.+|++.+|.+|+.|  |.|.-|+...
T Consensus       278 ~v~dqqvG~lWq---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD--G~I~~W~~~~  351 (603)
T KOG0318|consen  278 TVEDQQVGCLWQ---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD--GHINSWDSGS  351 (603)
T ss_pred             chhceEEEEEEe---CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC--ceEEEEecCC
Confidence            2 2344555553   5578899999999999999999999999999999999999999999999965  8999999754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.8e-38  Score=245.04  Aligned_cols=271  Identities=30%  Similarity=0.524  Sum_probs=229.1

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      ...+|+|+.+.  ...+++|..|++|++||...        ...+..+.||++.|.|+.|.  .+.+++|+.|.+|++||
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~--------~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWD  263 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS--------LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWD  263 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEecccc--------HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEe
Confidence            45789999985  56799999999999998754        34567889999999999985  56899999999999999


Q ss_pred             cCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE---EEEEEeCCCCCeeEEEEccCCCEEEEEeCC
Q 020798          102 VPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK---CLKVLPAHSDPVTAVDFNRDGTMIVTSSYD  178 (321)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  178 (321)
                      +.++++++.+.+|.+.|..+.|+  ++++++++.|.++.+||+.+..   +...+.+|...|..+.|+  .+++++++.|
T Consensus       264 v~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgD  339 (499)
T KOG0281|consen  264 VNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD  339 (499)
T ss_pred             ccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCC
Confidence            99999999999999999999997  4699999999999999997654   334567899999999986  4599999999


Q ss_pred             CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe
Q 020798          179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK  258 (321)
Q Consensus       179 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (321)
                      .+|++|+..++++++.+. .+...|.++.+  .|+++++|++|.+|++||+..|..++.+++|...+.|+.+     |.+
T Consensus       340 RTikvW~~st~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF-----d~k  411 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-----DNK  411 (499)
T ss_pred             ceEEEEeccceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee-----cCc
Confidence            999999999999887764 55666766655  7889999999999999999999999999999988777653     578


Q ss_pred             EEEEeCCCCeEEEEEcccceE---------EEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          259 YIVSGSEDSCVYLWELQSRKV---------VQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       259 ~l~~~~~dg~i~vwd~~~~~~---------~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .+++|+.||+|+|||+.....         +..+..|.+.|..+.|  |...+++++  .|.+|.|||...
T Consensus       412 rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsss--HddtILiWdFl~  478 (499)
T KOG0281|consen  412 RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSS--HDDTILIWDFLN  478 (499)
T ss_pred             eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEecc--CCCeEEEEEcCC
Confidence            899999999999999976532         3344568899999999  466777777  457899999753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-35  Score=220.79  Aligned_cols=300  Identities=23%  Similarity=0.392  Sum_probs=245.3

Q ss_pred             ccccCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-
Q 020798            6 SLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-   84 (321)
Q Consensus         6 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-   84 (321)
                      .+..++.+. .+.+.+|...|.+++|+-+|..|++|+.|+++.+|.+.....      .......+|.+.|-.++|+|. 
T Consensus         4 t~~~~~~l~-~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~------~~~~~~~gh~~svdql~w~~~~   76 (313)
T KOG1407|consen    4 TLPKFKSLK-RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF------RKELVYRGHTDSVDQLCWDPKH   76 (313)
T ss_pred             cccchhhhh-hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh------hhhhcccCCCcchhhheeCCCC
Confidence            334444333 377889999999999999999999999999999998875421      223345789999999999985 


Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEE
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVD  164 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  164 (321)
                      ...|++++.|..|++||++.+++...+....+. ..+.|+|+|++++.++.|..|...|.++.+.+...+ ....+.-+.
T Consensus        77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~  154 (313)
T KOG1407|consen   77 PDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEIS  154 (313)
T ss_pred             CcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeee
Confidence            568999999999999999999988777654444 457899999999999999999999999887666543 234567788


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCc
Q 020798          165 FNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS  244 (321)
Q Consensus       165 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  244 (321)
                      |+.++.+|+.....|.|.+.....-+.+..+ ..|.....++.|+|+|+++++|+.|..+.+||+...-.++.+..+.-+
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si-~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp  233 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSI-KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP  233 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEecccccccccc-ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc
Confidence            9888888888888899999888776666665 355666788999999999999999999999999887777888766555


Q ss_pred             eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCc-------cEEEcc
Q 020798          245 KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR-------TVKIWT  317 (321)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~-------~i~iw~  317 (321)
                      +..+   .+..+|++||+|++|..|-|=++++|..+.+++ +.++...|+|||...+||-++.|.|+       .|||+-
T Consensus       234 VRTl---SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG  309 (313)
T KOG1407|consen  234 VRTL---SFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFG  309 (313)
T ss_pred             eEEE---EeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEec
Confidence            4433   344789999999999999999999999998886 67889999999999999999877654       788886


Q ss_pred             cc
Q 020798          318 QE  319 (321)
Q Consensus       318 ~~  319 (321)
                      +.
T Consensus       310 ~~  311 (313)
T KOG1407|consen  310 LS  311 (313)
T ss_pred             CC
Confidence            54

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3e-36  Score=234.91  Aligned_cols=280  Identities=32%  Similarity=0.516  Sum_probs=233.7

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC---CCEEEEEeCCCcE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD---SRFLVSASDDKTI   97 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~~~l~~~~~d~~i   97 (321)
                      -|..-|+++...  ++.+++|++||.+++|+..+         .....+.+|.++|.+++|.-.   ...|++++.|.++
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G---------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl  171 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL  171 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCC---------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence            488889888877  78999999999999998764         345678899999998887532   3469999999999


Q ss_pred             EEEecCCcce----eeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC-------------------------CCE
Q 020798           98 RLWDVPTATC----LKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK-------------------------TGK  148 (321)
Q Consensus        98 ~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-------------------------~~~  148 (321)
                      ++|.++.+..    ++...||...|-++...+++..+++|+.|.+|++|+..                         .+.
T Consensus       172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT  251 (423)
T ss_pred             EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence            9998876643    33446999999999999999999999999999999831                         112


Q ss_pred             EEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 020798          149 CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN  228 (321)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d  228 (321)
                      ++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.+...+..  +....++.++|..++|++|+.|..|++||
T Consensus       252 P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~D  328 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWD  328 (423)
T ss_pred             ceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccceeeecCCCCceeecC
Confidence            4456788999999999998 66899999999999999999987776643  45688999999999999999999999999


Q ss_pred             CCCCc---EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce-EEEEecCCCCCeEEEEecCCCceEEE
Q 020798          229 YSTGK---ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK-VVQKLEGHTDPVISVASHPTENIIAS  304 (321)
Q Consensus       229 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s  304 (321)
                      .+++.   ...++.+|.+-+.  +..+++.+..+|++|+.|+++++||+++.+ .+..+.+|.+.|.++.|+ ++..+++
T Consensus       329 PR~~~gs~v~~s~~gH~nwVs--svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvS  405 (423)
T KOG0313|consen  329 PRTGDGSVVSQSLIGHKNWVS--SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVS  405 (423)
T ss_pred             CCCCCCceeEEeeecchhhhh--heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEe
Confidence            98753   4567888877443  345666677889999999999999999987 899999999999999997 6679999


Q ss_pred             EeecCCccEEEcccc
Q 020798          305 GALDNDRTVKIWTQE  319 (321)
Q Consensus       305 ~~~d~~~~i~iw~~~  319 (321)
                      ||.|  ..|+|+...
T Consensus       406 GGaD--~~l~i~~~~  418 (423)
T KOG0313|consen  406 GGAD--NKLRIFKGS  418 (423)
T ss_pred             ccCc--ceEEEeccc
Confidence            9965  679988653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3e-36  Score=252.86  Aligned_cols=299  Identities=23%  Similarity=0.475  Sum_probs=246.7

Q ss_pred             eeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCC-----------------------------------
Q 020798           16 TQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDS-----------------------------------   60 (321)
Q Consensus        16 ~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~-----------------------------------   60 (321)
                      ...+++|...|++++|++|+..+++++.|..+.+||+........                                   
T Consensus       185 l~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~  264 (775)
T KOG0319|consen  185 LHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQY  264 (775)
T ss_pred             HHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEE
Confidence            456789999999999999999999999999999998744320000                                   


Q ss_pred             -------------CC-C--------------------------------CcccccccccccEEEEEEC-CCCCEEEEEeC
Q 020798           61 -------------TP-P--------------------------------SPLQKFTGHEQGVSDLVFS-SDSRFLVSASD   93 (321)
Q Consensus        61 -------------~~-~--------------------------------~~~~~~~~h~~~i~~~~~~-~~~~~l~~~~~   93 (321)
                                   .+ .                                .+...+-|..+.|.+++|- |+.++|+.+++
T Consensus       265 ~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN  344 (775)
T KOG0319|consen  265 WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN  344 (775)
T ss_pred             EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC
Confidence                         00 0                                0011223445567888774 67789999999


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE----EEEEEeCCCCCeeEEEEccCC
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK----CLKVLPAHSDPVTAVDFNRDG  169 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~~~~~  169 (321)
                      .+.+++|+..+..+. .+.+|.+.|.++....+|.+|++|+.|.++++|.++++.    ++....+|...|.+++++..+
T Consensus       345 s~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~  423 (775)
T KOG0319|consen  345 SPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG  423 (775)
T ss_pred             CCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC
Confidence            999999999888775 778999999999977778899999999999999884432    344557899999999997654


Q ss_pred             -CEEEEEeCCCeEEEEeCCCCcee--------eeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec
Q 020798          170 -TMIVTSSYDGLCRIWDASTGHCM--------KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG  240 (321)
Q Consensus       170 -~~l~~~~~dg~i~~~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~  240 (321)
                       .+|++++.|+++++|++...+..        +.....|...|++++++|+.+.+++|+.|.+.+||++.....+..+.+
T Consensus       424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG  503 (775)
T KOG0319|consen  424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG  503 (775)
T ss_pred             ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC
Confidence             48899999999999999752211        112235677899999999999999999999999999999999999999


Q ss_pred             cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          241 HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      |....+++.+.   +..+.+||++.|++|+||.+.+..+++++.||...|..+.|-.++..|++++  .||.||||+.++
T Consensus       504 H~RGvw~V~Fs---~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~--adGliKlWnikt  578 (775)
T KOG0319|consen  504 HTRGVWCVSFS---KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG--ADGLIKLWNIKT  578 (775)
T ss_pred             CccceEEEEec---cccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc--CCCcEEEEeccc
Confidence            99998887654   6678999999999999999999999999999999999999999999999998  458999999875

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-36  Score=248.10  Aligned_cols=281  Identities=23%  Similarity=0.419  Sum_probs=246.6

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      ++.+.+..|...|.++.|+|....++++-..|.+.||+.++.        ..+..+.-.+-+|++..|-+..+++++|++
T Consensus         4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq--------tmVksfeV~~~PvRa~kfiaRknWiv~GsD   75 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--------TMVKSFEVSEVPVRAAKFIARKNWIVTGSD   75 (794)
T ss_pred             hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc--------eeeeeeeecccchhhheeeeccceEEEecC
Confidence            345566779999999999999999999999999999987542        223445555678889999999999999999


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEccC-CCE
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNRD-GTM  171 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~  171 (321)
                      |..|++|+..+.+.++.+.+|.+.|.+++.+|..-++++++.|-+|++||.+.+ .+.+++.+|..-|++++|+|. .+.
T Consensus        76 D~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~nt  155 (794)
T KOG0276|consen   76 DMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNT  155 (794)
T ss_pred             CceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccc
Confidence            999999999999999999999999999999999999999999999999998765 577889999999999999995 568


Q ss_pred             EEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCC--CEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEE
Q 020798          172 IVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNG--KFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCIS  249 (321)
Q Consensus       172 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  249 (321)
                      +++++-|++|++|.+.+..+..++. .|...|+++.+-+.|  .+|++|+.|..++|||.++...++++.+|...+.   
T Consensus       156 FaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs---  231 (794)
T KOG0276|consen  156 FASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVS---  231 (794)
T ss_pred             eeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccce---
Confidence            9999999999999998887777764 677889999998754  6899999999999999999999999999988754   


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      ..++.|.-..+++|++||++|+|+..+-++...+.-..++|++++-.+..+.++.|.
T Consensus       232 ~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  232 FVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             EEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence            344557788999999999999999999888888877778999999999888888875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-35  Score=225.13  Aligned_cols=250  Identities=26%  Similarity=0.497  Sum_probs=214.0

Q ss_pred             CCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC-cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEE
Q 020798           63 PSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT-ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRI  141 (321)
Q Consensus        63 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  141 (321)
                      ..|+..+.+|++.|+.+.|+|+|..|++|+.|..|.+|++.. .+....+.+|+++|..+.|.+|++.+++++.|.+++.
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG  116 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence            446677889999999999999999999999999999999643 3445567899999999999999999999999999999


Q ss_pred             EecCCCEEEEEEeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec
Q 020798          142 WDVKTGKCLKVLPAHSDPVTAVDFNRDGT-MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL  220 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  220 (321)
                      ||.++|+.+..++.|..-+.++.-+.-|. ++.+++.|+++++||.++..+++.+.  ....+..+.|..++..+.+|+-
T Consensus       117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sggI  194 (338)
T KOG0265|consen  117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISGGI  194 (338)
T ss_pred             EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceeeccc
Confidence            99999999999999999999888544454 56678899999999999877766552  3456889999999999999999


Q ss_pred             CCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc----ceEEEEecCCC----CCeEE
Q 020798          221 DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS----RKVVQKLEGHT----DPVIS  292 (321)
Q Consensus       221 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~h~----~~v~~  292 (321)
                      |+.|++||++....+..+.+|..++..   .+..++|.++.+-+-|.++++||++.    .+++..+.+|.    .....
T Consensus       195 dn~ikvWd~r~~d~~~~lsGh~DtIt~---lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~  271 (338)
T KOG0265|consen  195 DNDIKVWDLRKNDGLYTLSGHADTITG---LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK  271 (338)
T ss_pred             cCceeeeccccCcceEEeecccCceee---EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence            999999999999999999999887544   44457899999999999999999964    34566677653    24678


Q ss_pred             EEecCCCceEEEEeecCCccEEEcccc
Q 020798          293 VASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       293 ~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ++|+|+++.+..|+.|  +.+++||..
T Consensus       272 cswsp~~~~i~ags~d--r~vyvwd~~  296 (338)
T KOG0265|consen  272 CSWSPNGTKITAGSAD--RFVYVWDTT  296 (338)
T ss_pred             eeccCCCCcccccccc--ceEEEeecc
Confidence            8999999999999954  899999964

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.2e-35  Score=253.04  Aligned_cols=244  Identities=38%  Similarity=0.651  Sum_probs=217.0

Q ss_pred             ccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc--eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec-CCCE
Q 020798           72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV-KTGK  148 (321)
Q Consensus        72 h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~-~~~~  148 (321)
                      |...|.++.|+++|+++++++.++.+++|+....+  ....+.+|...|..++|+|++.++++++.|++|++||+ ..+.
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~  237 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR  237 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence            37889999999999999999999999999997776  66777899999999999999999999999999999999 5558


Q ss_pred             EEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 020798          149 CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN  228 (321)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d  228 (321)
                      .++++.+|...|++++|+|+++.+++|+.|++|++||++++++...+. .+...+..++|++++++|++++.|+.|++||
T Consensus       238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd  316 (456)
T KOG0266|consen  238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPDGNLLVSASYDGTIRVWD  316 (456)
T ss_pred             EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence            899999999999999999999999999999999999999988777664 5566899999999999999999999999999


Q ss_pred             CCCCc--EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCC---eEEEEecCCCceEE
Q 020798          229 YSTGK--ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDP---VISVASHPTENIIA  303 (321)
Q Consensus       229 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~---v~~~~~~p~~~~l~  303 (321)
                      +.++.  ....+..+.... .+......+++.++++++.|+.+++||+..+..+..+.+|...   +.+...++.+.++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  395 (456)
T KOG0266|consen  317 LETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY  395 (456)
T ss_pred             CCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence            99998  567777766654 5666666789999999999999999999999999999998774   44455678899999


Q ss_pred             EEeecCCccEEEcccc
Q 020798          304 SGALDNDRTVKIWTQE  319 (321)
Q Consensus       304 s~~~d~~~~i~iw~~~  319 (321)
                      +|+.  |+.|++|+.+
T Consensus       396 sg~~--d~~v~~~~~~  409 (456)
T KOG0266|consen  396 SGSE--DGSVYVWDSS  409 (456)
T ss_pred             EEeC--CceEEEEeCC
Confidence            9995  5899999986

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.3e-35  Score=239.78  Aligned_cols=308  Identities=24%  Similarity=0.409  Sum_probs=238.9

Q ss_pred             ccccCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC
Q 020798            6 SLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS   85 (321)
Q Consensus         6 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~   85 (321)
                      .+....|+.....+++|...|+++++.|.|-.|++|+.|..|++||+.++...... ...++....  ..|+++.|++.|
T Consensus       150 ~~~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~l~P~E~--h~i~sl~ys~Tg  226 (641)
T KOG0772|consen  150 SIIKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-FRQLQPCET--HQINSLQYSVTG  226 (641)
T ss_pred             chhhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-hhccCcccc--cccceeeecCCC
Confidence            34455688888889999999999999999999999999999999999887643322 223333333  458999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCcceee------------eeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEE-EE
Q 020798           86 RFLVSASDDKTIRLWDVPTATCLK------------TLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKC-LK  151 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~-~~  151 (321)
                      ..|++.+...+.+++|-...+...            ..+||...++|.+|+|.. +.|++++.||++++||+...+. .+
T Consensus       227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q  306 (641)
T KOG0772|consen  227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ  306 (641)
T ss_pred             CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence            999988888899999976554332            236899999999999976 4689999999999999976542 22


Q ss_pred             EEe-----CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCc--eeeeeccCCCC--CeEEEEEccCCCEEEEEecCC
Q 020798          152 VLP-----AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH--CMKTLIDDENP--PVSFVKFSPNGKFILVGTLDN  222 (321)
Q Consensus       152 ~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~d~  222 (321)
                      .++     ...-++++++|+|++..+++|..||.|.+|+..+..  ....+...|..  .|+++.|+++|++|++-+.|+
T Consensus       307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~  386 (641)
T KOG0772|consen  307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD  386 (641)
T ss_pred             EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence            332     223468999999999999999999999999975432  22233344444  799999999999999999999


Q ss_pred             eEEEEeCCCCc-EEEEEeccCCceeEEEeEEEecCCeEEEEeCC------CCeEEEEEcccceEEEEecCCCCCeEEEEe
Q 020798          223 TLRLWNYSTGK-ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSE------DSCVYLWELQSRKVVQKLEGHTDPVISVAS  295 (321)
Q Consensus       223 ~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~  295 (321)
                      ++++||++..+ ++....+....-....++| +|+.+++++|++      .|.+.+||..+...++++.-....|..+.|
T Consensus       387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~F-SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~W  465 (641)
T KOG0772|consen  387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCF-SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLW  465 (641)
T ss_pred             ceeeeeccccccchhhhcCCCccCCCCcccc-CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEee
Confidence            99999998753 4444443322222223344 478889998863      578999999999989888877889999999


Q ss_pred             cCCCceEEEEeecCCccEEEcccc
Q 020798          296 HPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       296 ~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ||.-+.+..|+  +||.+++|--.
T Consensus       466 hpkLNQi~~gs--gdG~~~vyYdp  487 (641)
T KOG0772|consen  466 HPKLNQIFAGS--GDGTAHVYYDP  487 (641)
T ss_pred             cchhhheeeec--CCCceEEEECc
Confidence            99998888887  45888887543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.9e-37  Score=242.57  Aligned_cols=247  Identities=26%  Similarity=0.476  Sum_probs=211.3

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccccccc-ccEEEEEECCCCCEEEEEeC
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHE-QGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~l~~~~~   93 (321)
                      +...++.|..+|+++.|+++|.++++|+.+|.|++|+..-         ..+..+..|. ..|++++|+|+...+++++.
T Consensus       130 FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm---------nnVk~~~ahh~eaIRdlafSpnDskF~t~Sd  200 (464)
T KOG0284|consen  130 FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM---------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD  200 (464)
T ss_pred             HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch---------hhhHHhhHhhhhhhheeccCCCCceeEEecC
Confidence            4455789999999999999999999999999999996532         2234445554 89999999999999999999


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEE
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV  173 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  173 (321)
                      ||+|+|||....+....+.+|.-.|.+++|+|....+++++.|..|++||.+++.++.++..|+..|..+.|+|++++|+
T Consensus       201 Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Ll  280 (464)
T KOG0284|consen  201 DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLL  280 (464)
T ss_pred             CCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeE
Confidence            99999999988888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEEEE-eccCCceeEEEeE
Q 020798          174 TSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYSTGKILKTY-TGHTNSKYCISST  251 (321)
Q Consensus       174 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~  251 (321)
                      +++.|..++++|+++-+.+..+ ..+...+..+.|+| ...+|.+|+.||.|..|.+...+++..+ ..|...+   ...
T Consensus       281 t~skD~~~kv~DiR~mkEl~~~-r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~i---wsl  356 (464)
T KOG0284|consen  281 TGSKDQSCKVFDIRTMKELFTY-RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEI---WSL  356 (464)
T ss_pred             EccCCceEEEEehhHhHHHHHh-hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccce---eee
Confidence            9999999999999965544443 34667789999999 4567788999999999998855555544 3454444   344


Q ss_pred             EEecCCeEEEEeCCCCeEEEEEc
Q 020798          252 FSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      .+.|-|..|++|+.|.++++|.-
T Consensus       357 ~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  357 AYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             eccccceeEeecCCCcceeeecc
Confidence            45577999999999999999975

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.6e-35  Score=246.30  Aligned_cols=287  Identities=23%  Similarity=0.460  Sum_probs=246.1

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      -.+.||...|.++++|.+...+++|+ .+.+++|+....        ..+++++  .+.+.+..|.|.++++++|...|.
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~--------kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Ge  435 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL--------KCIRTIT--CGYILASKFVPGDRYIVLGTKNGE  435 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc--------ceeEEec--cccEEEEEecCCCceEEEeccCCc
Confidence            34579999999999999988888876 678999976532        3344444  347889999999999999999999


Q ss_pred             EEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC-----CEEEEEEe-------CCCCCeeEEE
Q 020798           97 IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT-----GKCLKVLP-------AHSDPVTAVD  164 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-----~~~~~~~~-------~~~~~v~~~~  164 (321)
                      +.+||+.+...+..+.+|.+.++.++.+||+..+++|+.|.+|++||..-     +...+.+.       .-...|.+++
T Consensus       436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~  515 (888)
T KOG0306|consen  436 LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS  515 (888)
T ss_pred             eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence            99999999988888999999999999999999999999999999999631     21111111       1246789999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCc
Q 020798          165 FNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS  244 (321)
Q Consensus       165 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  244 (321)
                      ++||+++|+++--|+++++|-+.+-+....++ +|.-||.++.++||++.+++|+.|.+|++|-+.-|..-+++-+|+..
T Consensus       516 ~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS  594 (888)
T KOG0306|consen  516 VSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS  594 (888)
T ss_pred             EcCCCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc
Confidence            99999999999999999999998877666665 46678999999999999999999999999999999999999999888


Q ss_pred             eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          245 KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ++++.++   |....+.+++.|+.|+-||....+.+..+.+|...|++++.+|+|.+++++|  .|.+|++|....
T Consensus       595 vm~V~F~---P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s--hD~sIRlwE~td  665 (888)
T KOG0306|consen  595 VMSVQFL---PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS--HDKSIRLWERTD  665 (888)
T ss_pred             eeEEEEc---ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc--CCceeEeeeccC
Confidence            7766443   5778889999999999999999999999999999999999999999999999  457899998754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-35  Score=243.84  Aligned_cols=249  Identities=27%  Similarity=0.484  Sum_probs=227.6

Q ss_pred             cccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT  146 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  146 (321)
                      +.+..++..|.++.++|...+++++-.+|.|.|||.++...++++.-...+|.+..|-+..+++++|+.|..|++|+..+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            44556889999999999999999999999999999999999999888888999999999999999999999999999999


Q ss_pred             CEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc-CCCEEEEEecCCeEE
Q 020798          147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP-NGKFILVGTLDNTLR  225 (321)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~~i~  225 (321)
                      ++.+..+..|.+-|.+++.+|...++++++.|-+|++||-...-.....+.+|...|..++|+| |.+.+++++-|++|+
T Consensus        87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK  166 (794)
T KOG0276|consen   87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK  166 (794)
T ss_pred             ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence            9999999999999999999999999999999999999999876555555667778899999999 567899999999999


Q ss_pred             EEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEE
Q 020798          226 LWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG  305 (321)
Q Consensus       226 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  305 (321)
                      +|.+....+..++.+|...+.|+.. +...|..+|++|+.|.+|+|||.++..++++++||.+.|..+.|+|.-.++++|
T Consensus       167 VWslgs~~~nfTl~gHekGVN~Vdy-y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  167 VWSLGSPHPNFTLEGHEKGVNCVDY-YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             EEEcCCCCCceeeeccccCcceEEe-ccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence            9999999999999999998888754 233456799999999999999999999999999999999999999999999999


Q ss_pred             eecCCccEEEccc
Q 020798          306 ALDNDRTVKIWTQ  318 (321)
Q Consensus       306 ~~d~~~~i~iw~~  318 (321)
                      |+  ||++|||+.
T Consensus       246 sE--DGTvriWhs  256 (794)
T KOG0276|consen  246 SE--DGTVRIWNS  256 (794)
T ss_pred             cC--CccEEEecC
Confidence            95  589999985

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-35  Score=214.76  Aligned_cols=247  Identities=24%  Similarity=0.462  Sum_probs=213.4

Q ss_pred             cccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           65 PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        65 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      .+..+..|+++|..+.|+-+|++.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCC--ceeeeeccCCCCCeEEEEEccCCCEEEEEecCC
Q 020798          145 KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG--HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN  222 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~  222 (321)
                      .+|+....+..|...|..+.|+.+...+++|+.|..+++||-++.  ++++. +......+.++..  .+..|++|+.||
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi-ldea~D~V~Si~v--~~heIvaGS~DG  165 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI-LDEAKDGVSSIDV--AEHEIVAGSVDG  165 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch-hhhhcCceeEEEe--cccEEEeeccCC
Confidence            999999999999999999999999999999999999999999764  33333 3334445666666  455799999999


Q ss_pred             eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCe--EEEEecCCCc
Q 020798          223 TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV--ISVASHPTEN  300 (321)
Q Consensus       223 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v--~~~~~~p~~~  300 (321)
                      +++.||++.|.+...+.++.  +.++.   ..++++..++++-|+++++.|-.++++++.+++|.+.=  ...+++....
T Consensus       166 tvRtydiR~G~l~sDy~g~p--it~vs---~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt  240 (307)
T KOG0316|consen  166 TVRTYDIRKGTLSSDYFGHP--ITSVS---FSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT  240 (307)
T ss_pred             cEEEEEeecceeehhhcCCc--ceeEE---ecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence            99999999998887776653  33332   34789999999999999999999999999999997643  4566777788


Q ss_pred             eEEEEeecCCccEEEcccccC
Q 020798          301 IIASGALDNDRTVKIWTQEKE  321 (321)
Q Consensus       301 ~l~s~~~d~~~~i~iw~~~~~  321 (321)
                      ++++||+  ||.|++||+..+
T Consensus       241 hV~sgSE--DG~Vy~wdLvd~  259 (307)
T KOG0316|consen  241 HVFSGSE--DGKVYFWDLVDE  259 (307)
T ss_pred             eEEeccC--CceEEEEEeccc
Confidence            9999995  589999998653

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=7.7e-36  Score=234.91  Aligned_cols=294  Identities=23%  Similarity=0.435  Sum_probs=244.5

Q ss_pred             CcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE
Q 020798           11 RPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~   90 (321)
                      .|-.....+..|.+.|..+.|-++...|++|+.|..|++|++....      ......+.+..++|.++.|.++++++++
T Consensus       163 lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k------~~~~~tLaGs~g~it~~d~d~~~~~~iA  236 (459)
T KOG0288|consen  163 LPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK------SELISTLAGSLGNITSIDFDSDNKHVIA  236 (459)
T ss_pred             cchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch------hhhhhhhhccCCCcceeeecCCCceEEe
Confidence            3444455678899999999999999999999999999999775422      2345667777889999999999999999


Q ss_pred             EeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC
Q 020798           91 ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT  170 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (321)
                      ++.|+.+++|++...+...++.+|++.|+++.|......+++|+.|.+|+.||+....+.+++- ....+.++..+  ..
T Consensus       237 as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~  313 (459)
T KOG0288|consen  237 ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--IS  313 (459)
T ss_pred             ecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ce
Confidence            9999999999999999999999999999999998877779999999999999999887776543 34456666665  45


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCce-eEEE
Q 020798          171 MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK-YCIS  249 (321)
Q Consensus       171 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~  249 (321)
                      .++++..|+.|++||++++.+...+.  ....++++..+++|..+.+++.|.++.+.|+++......+....... .-.+
T Consensus       314 ~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt  391 (459)
T KOG0288|consen  314 DVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT  391 (459)
T ss_pred             eeeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence            68888999999999999988777663  34479999999999999999999999999999988877775432110 0022


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCC--CeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD--PVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ...++|++.|+++|+.||.|+||++.++++.+.+.....  .|++++|+|.|..|++++  .++.+.+|.
T Consensus       392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad--k~~~v~lW~  459 (459)
T KOG0288|consen  392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD--KQKAVTLWT  459 (459)
T ss_pred             eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc--CCcceEecC
Confidence            333458999999999999999999999999988877544  499999999999999986  568899994

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.5e-35  Score=227.49  Aligned_cols=247  Identities=25%  Similarity=0.467  Sum_probs=220.0

Q ss_pred             ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC
Q 020798           66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK  145 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  145 (321)
                      .+.+.+|.+-|.++++.|...+|++|+.|++++|||+.+++...++.+|...+..+++++-..++++++.|+.|+.||+.
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 020798          146 TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLR  225 (321)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~  225 (321)
                      ..+.+..+.+|-..|.+++.+|.-+.+++|+.|.++++||+++...+..+ ..|..+|..+.+.|....+++++.|++|+
T Consensus       224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-~GH~~~V~~V~~~~~dpqvit~S~D~tvr  302 (460)
T KOG0285|consen  224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-SGHTNPVASVMCQPTDPQVITGSHDSTVR  302 (460)
T ss_pred             hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-cCCCCcceeEEeecCCCceEEecCCceEE
Confidence            99999999999999999999999999999999999999999998776665 45677899999998888899999999999


Q ss_pred             EEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEE
Q 020798          226 LWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG  305 (321)
Q Consensus       226 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  305 (321)
                      +||++.++....+..|...+.++.   ..|....+|+++.| .|+-|++..+..+..+.+|..-|++++.+.|+ .+++|
T Consensus       303 lWDl~agkt~~tlt~hkksvral~---lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G  377 (460)
T KOG0285|consen  303 LWDLRAGKTMITLTHHKKSVRALC---LHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSG  377 (460)
T ss_pred             EeeeccCceeEeeecccceeeEEe---cCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEc
Confidence            999999999888887776655543   34566778888776 48999999999999999999999999998776 55666


Q ss_pred             eecCCccEEEccccc
Q 020798          306 ALDNDRTVKIWTQEK  320 (321)
Q Consensus       306 ~~d~~~~i~iw~~~~  320 (321)
                      +  ++|.+.+||-+.
T Consensus       378 ~--dng~~~fwdwks  390 (460)
T KOG0285|consen  378 G--DNGSIMFWDWKS  390 (460)
T ss_pred             C--CceEEEEEecCc
Confidence            6  469999999764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.4e-33  Score=229.03  Aligned_cols=247  Identities=37%  Similarity=0.692  Sum_probs=215.3

Q ss_pred             cccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT  146 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  146 (321)
                      ..+.+|...|.++.|+|++++|++++.||.+++|++.+++....+..|...+..+.|+|+++.+++++.++.|++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            45678999999999999999999999999999999998887778888999999999999999999999999999999998


Q ss_pred             CEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 020798          147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL  226 (321)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i  226 (321)
                      ++....+..|...+.++.|+|++.++++++.++.+++||+++++....+. .+...+..+.++|++.++++++.++.|++
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence            87788888888899999999998888888889999999999776665554 45567899999999998888888999999


Q ss_pred             EeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          227 WNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       227 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      ||+++++.+..+..+.....++   ...+++..+++++.++.|++||++.++.+..+..|..++.+++|+|++.++++++
T Consensus       162 ~d~~~~~~~~~~~~~~~~i~~~---~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         162 WDLRTGKCVATLTGHTGEVNSV---AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             EEccccccceeEecCccccceE---EECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence            9999888888887665544433   3346777888888899999999999888888888999999999999988888876


Q ss_pred             ecCCccEEEcccc
Q 020798          307 LDNDRTVKIWTQE  319 (321)
Q Consensus       307 ~d~~~~i~iw~~~  319 (321)
                        .++.|++|+.+
T Consensus       239 --~~~~i~i~~~~  249 (289)
T cd00200         239 --EDGTIRVWDLR  249 (289)
T ss_pred             --CCCcEEEEEcC
Confidence              46899999986

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3.3e-33  Score=239.82  Aligned_cols=277  Identities=22%  Similarity=0.325  Sum_probs=212.7

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCC----C-CCCCCcccccccccccEEEEEECC-CCCEEEEEeCC
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNS----D-STPPSPLQKFTGHEQGVSDLVFSS-DSRFLVSASDD   94 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~----~-~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~~~~~d   94 (321)
                      .|...|.....++++..+++++.+.....|+.......    . .........+.+|.+.|.+++|+| ++++|++|+.|
T Consensus        18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D   97 (493)
T PTZ00421         18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED   97 (493)
T ss_pred             cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence            35567777788889877888888888888875432110    0 000111224679999999999999 78899999999


Q ss_pred             CcEEEEecCCc-------ceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEc
Q 020798           95 KTIRLWDVPTA-------TCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFN  166 (321)
Q Consensus        95 ~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  166 (321)
                      ++|++||+.+.       ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++....+..|...|.+++|+
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s  177 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN  177 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence            99999999764       2456778999999999999985 689999999999999999999888888999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe----cCCeEEEEeCCCCc-EEEEEecc
Q 020798          167 RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT----LDNTLRLWNYSTGK-ILKTYTGH  241 (321)
Q Consensus       167 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~----~d~~i~i~d~~~~~-~~~~~~~~  241 (321)
                      |++..|++++.|+.|++||+++++.+..+..........+.|.+++..+++++    .|+.|++||+++.. ++.....+
T Consensus       178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d  257 (493)
T PTZ00421        178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD  257 (493)
T ss_pred             CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence            99999999999999999999998877665433333345677888887777654    47899999998754 33333322


Q ss_pred             CCceeEEEeEEEecCCeEEEEeC-CCCeEEEEEcccceEEEEecC-CCCCeEEEEecCCC
Q 020798          242 TNSKYCISSTFSVTNGKYIVSGS-EDSCVYLWELQSRKVVQKLEG-HTDPVISVASHPTE  299 (321)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~  299 (321)
                      ...  .+...++.+++.+|++|+ .|+.|++||+.+++++..... +..++.+++|.|..
T Consensus       258 ~~~--~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        258 QSS--ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CCC--ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            222  233344557788888776 599999999999887765543 45678899998874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.5e-34  Score=228.92  Aligned_cols=292  Identities=27%  Similarity=0.459  Sum_probs=231.3

Q ss_pred             ccccCCcceeeeeccCCcccEEEEEECCCCCE-EEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC
Q 020798            6 SLESFRPYTLTQTLNGHLRAISSVKFSHDGRL-LASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD   84 (321)
Q Consensus         6 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~   84 (321)
                      .++.|+-++.....+.| ..|++++|||...+ +|+++ .-.+.+|+....        .....+...+..++++.|-.|
T Consensus        10 e~~~w~~~~~~~~~ke~-~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~--------~~~k~~srFk~~v~s~~fR~D   79 (487)
T KOG0310|consen   10 EIRYWRQETFPPVHKEH-NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTR--------SVRKTFSRFKDVVYSVDFRSD   79 (487)
T ss_pred             cchhhhhhccccccccc-CcceeEecCCCCCCceEEec-ccEEEEEecchh--------hhhhhHHhhccceeEEEeecC
Confidence            34555555544444434 78999999997654 45444 456777865432        234445556788999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCE-EEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEE
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAV  163 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  163 (321)
                      |++|++|...|.|++||+.+...+..+.+|..++..+.|+|+++. |++|+.|+.+++||+.+......+..|++.|.+.
T Consensus        80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen   80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG  159 (487)
T ss_pred             CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence            999999999999999997776677888999999999999997664 6788889999999999888766889999999999


Q ss_pred             EEccCCC-EEEEEeCCCeEEEEeCCCCc-eeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC-cEEEEEec
Q 020798          164 DFNRDGT-MIVTSSYDGLCRIWDASTGH-CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG-KILKTYTG  240 (321)
Q Consensus       164 ~~~~~~~-~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~-~~~~~~~~  240 (321)
                      +|+|... .+++|++||.|++||++... .+.+  -.++.+|..+.+-|.|..+++++. +.+++||+.+| +.+..+..
T Consensus       160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e--lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~  236 (487)
T KOG0310|consen  160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE--LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN  236 (487)
T ss_pred             ccccCCCeEEEecCCCceEEEEEeccCCceeEE--ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhc
Confidence            9999755 78899999999999999763 3333  367788999999999999988764 57999999854 55555555


Q ss_pred             cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEc
Q 020798          241 HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW  316 (321)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw  316 (321)
                      |...+.|+..   ..++..|++|+-||.|++||+.+-+.++.+. ..++|.+++.+|++..++.|..  ||.+.+=
T Consensus       237 H~KtVTcL~l---~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGms--nGlv~~r  306 (487)
T KOG0310|consen  237 HNKTVTCLRL---ASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMS--NGLVSIR  306 (487)
T ss_pred             ccceEEEEEe---ecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecc--cceeeee
Confidence            7777666543   3478999999999999999998888888776 4689999999999999999873  5666543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.7e-36  Score=232.31  Aligned_cols=232  Identities=33%  Similarity=0.642  Sum_probs=203.1

Q ss_pred             ccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE
Q 020798           72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK  151 (321)
Q Consensus        72 h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  151 (321)
                      ...+|+|+.+.  ...+++|..|++|+|||..+..+.+.+.||++.|.|+.|.  .+.+++|+.|.+|++||.++++++.
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence            35689999985  4468999999999999999999999999999999999886  4589999999999999999999999


Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce--eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC--MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                      ++..|...|..+.|+  ..++++++.|.++.+||+.....  ....+.++...++.+.|+  .+++++++.|.+|++|++
T Consensus       272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~  347 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST  347 (499)
T ss_pred             HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence            999999999999997  45899999999999999876532  233445677778888875  559999999999999999


Q ss_pred             CCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecC
Q 020798          230 STGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDN  309 (321)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~  309 (321)
                      .+++.++.+.+|...+.|+-     -.++++++|++|.+|++||+..+.++..++||..=|.++.|.  ...+++|+.| 
T Consensus       348 st~efvRtl~gHkRGIAClQ-----Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD-  419 (499)
T KOG0281|consen  348 STCEFVRTLNGHKRGIACLQ-----YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD-  419 (499)
T ss_pred             cceeeehhhhcccccceehh-----ccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc-
Confidence            99999999999988755432     368999999999999999999999999999999999999995  6789999976 


Q ss_pred             CccEEEccccc
Q 020798          310 DRTVKIWTQEK  320 (321)
Q Consensus       310 ~~~i~iw~~~~  320 (321)
                       |.|++||+..
T Consensus       420 -GkikvWdl~a  429 (499)
T KOG0281|consen  420 -GKIKVWDLQA  429 (499)
T ss_pred             -ceEEEEeccc
Confidence             8999999853

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.9e-33  Score=245.67  Aligned_cols=298  Identities=23%  Similarity=0.362  Sum_probs=240.4

Q ss_pred             CCcccEEEEEECCCCCEEEEec--CCceEEEeeccccCCCCC----CCCCcccccccccccEEEEEECCCCCEEEEEeCC
Q 020798           21 GHLRAISSVKFSHDGRLLASSS--ADKTLLTYSLSSISNSDS----TPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~--~d~~v~~~~~~~~~~~~~----~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      .+...|.++..+|+|..+|||+  .|+.+++|..........    .-+..+.....|.+.|.|+.|+|||++||+|++|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            3456799999999999999999  899999998765442111    1234456667899999999999999999999999


Q ss_pred             CcEEEEecCC------------------cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC
Q 020798           95 KTIRLWDVPT------------------ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH  156 (321)
Q Consensus        95 ~~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  156 (321)
                      +.|.||....                  .++...+.+|.+.|..++|+|++.+|++++.|++|.+|+.++.+.+..+..|
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H  170 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH  170 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence            9999998762                  1245567899999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCC-----CCeEEEEEccCCCEEEEEec----CCeEEEE
Q 020798          157 SDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDEN-----PPVSFVKFSPNGKFILVGTL----DNTLRLW  227 (321)
Q Consensus       157 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~l~~~~~----d~~i~i~  227 (321)
                      ...|..+.|.|-|++|++-+.|+++++|++.+-...+.+....+     .....+.|+|||++|++...    -..+.|.
T Consensus       171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii  250 (942)
T KOG0973|consen  171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII  250 (942)
T ss_pred             cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence            99999999999999999999999999999776555554433222     23567899999999988642    2368899


Q ss_pred             eCCCCcEEEEEeccCCceeEEEeEE---EecCC-----------eEEEEeCCCCeEEEEEcccceEEEEecC-CCCCeEE
Q 020798          228 NYSTGKILKTYTGHTNSKYCISSTF---SVTNG-----------KYIVSGSEDSCVYLWELQSRKVVQKLEG-HTDPVIS  292 (321)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~  292 (321)
                      +-.+.+.-..+.+|..+..++.+.-   -.+..           ..+|+|+.|++|.||.....+++..+.. ...+|.+
T Consensus       251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D  330 (942)
T KOG0973|consen  251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD  330 (942)
T ss_pred             ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence            8888888888899988766654321   11111           1688999999999999987777654433 3568999


Q ss_pred             EEecCCCceEEEEeecCCccEEEccccc
Q 020798          293 VASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       293 ~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ++|+|||..|..+|.|  |+|.+...+.
T Consensus       331 msWspdG~~LfacS~D--GtV~~i~Fee  356 (942)
T KOG0973|consen  331 MSWSPDGFSLFACSLD--GTVALIHFEE  356 (942)
T ss_pred             eeEcCCCCeEEEEecC--CeEEEEEcch
Confidence            9999999999999976  7898887764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.4e-33  Score=211.99  Aligned_cols=272  Identities=21%  Similarity=0.422  Sum_probs=221.1

Q ss_pred             EEEEecCCceEEEeeccccC----CCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeee
Q 020798           37 LLASSSADKTLLTYSLSSIS----NSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI  112 (321)
Q Consensus        37 ~l~~~~~d~~v~~~~~~~~~----~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  112 (321)
                      .|++|+++..|.-+++.-..    ........++..+..|.++|++++.  +++++++|+.|-+|+|||+.+...+..+.
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence            36778888888777665433    1122233456778899999999998  47899999999999999999998888889


Q ss_pred             cCcccEEEEEECCCCC--EEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q 020798          113 GHTNYVFCVNFNPQSN--MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH  190 (321)
Q Consensus       113 ~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  190 (321)
                      .|.+.|+++.|.++-.  .|++|+.||.|.+|+...-.++..++.|...|+.++.+|.+++.++.+.|+.+++|++-.++
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            9999999999998764  89999999999999999999999999999999999999999999999999999999997776


Q ss_pred             eeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEE
Q 020798          191 CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVY  270 (321)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  270 (321)
                      ......-..  ....+.|+|.|.+++.+..+ .|-+|.+.+.++...+... ....|+.    ..++..|++|..|+.|+
T Consensus       161 ~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~----~l~~~~L~vG~d~~~i~  232 (362)
T KOG0294|consen  161 VAFVLNLKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCAT----FLDGSELLVGGDNEWIS  232 (362)
T ss_pred             cceeeccCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeee----ecCCceEEEecCCceEE
Confidence            433332222  23458999999999887766 4999998877665554332 1222222    24688999999999999


Q ss_pred             EEEcccceEEEEecCCCCCeEEEEe--cCCCceEEEEeecCCccEEEccccc
Q 020798          271 LWELQSRKVVQKLEGHTDPVISVAS--HPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       271 vwd~~~~~~~~~~~~h~~~v~~~~~--~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +||..+...+..+.+|..+|-++.+  .|++.+|+|+|.  ||.|++||++-
T Consensus       233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS--DG~I~vWd~~~  282 (362)
T KOG0294|consen  233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS--DGFIKVWDIDM  282 (362)
T ss_pred             EeccCCCccceeeecchhheeeeEEEecCCceEEEEecc--CceEEEEEccc
Confidence            9999988889999999999999873  677889999994  58999999863

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.6e-32  Score=203.37  Aligned_cols=243  Identities=26%  Similarity=0.516  Sum_probs=201.8

Q ss_pred             ccccccccccEEEEEECCC-CCEEEEEeCCCcEEEEecCCc---ceeeee-ecCcccEEEEEECCCCCEEEEeeCCCcEE
Q 020798           66 LQKFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTA---TCLKTL-IGHTNYVFCVNFNPQSNMIVSGAFDETVR  140 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  140 (321)
                      ++.+.+|++.+..++|+|- |..||+++.|+.|++|+...+   .+...+ .+|+..|.+++|+|.|++|++++.|.++.
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            4567899999999999998 889999999999999998743   332222 37999999999999999999999999999


Q ss_pred             EEecCCC--EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCc--eeeeeccCCCCCeEEEEEccCCCEEE
Q 020798          141 IWDVKTG--KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH--CMKTLIDDENPPVSFVKFSPNGKFIL  216 (321)
Q Consensus       141 ~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~l~  216 (321)
                      +|.-..+  +++..+.+|+..|.+++|+++|++|++++.|..+-+|.+....  .....+.+|...|..+.|+|...+|+
T Consensus        87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~  166 (312)
T KOG0645|consen   87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF  166 (312)
T ss_pred             EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence            9976543  6788999999999999999999999999999999999887433  23345567788899999999999999


Q ss_pred             EEecCCeEEEEeCC---CCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEE
Q 020798          217 VGTLDNTLRLWNYS---TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISV  293 (321)
Q Consensus       217 ~~~~d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  293 (321)
                      +++.|++|++|+-.   ....++++.+|...++++.+   .+.|..|++++.|++|+||...+.-.    .-|..++..+
T Consensus       167 S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F---~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v  239 (312)
T KOG0645|consen  167 SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF---DNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDV  239 (312)
T ss_pred             EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe---cCCCceEEEecCCcceEeeeeccCcc----hhcccceEee
Confidence            99999999999865   33578889999887766543   36789999999999999999763211    2377899999


Q ss_pred             EecCCCceEEEEeecCCccEEEcccc
Q 020798          294 ASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       294 ~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +|.  ...||+++  +|+.|+++...
T Consensus       240 ~W~--~~~IaS~g--gD~~i~lf~~s  261 (312)
T KOG0645|consen  240 PWD--NGVIASGG--GDDAIRLFKES  261 (312)
T ss_pred             eec--ccceEecc--CCCEEEEEEec
Confidence            998  56888888  56789988643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1e-32  Score=237.24  Aligned_cols=274  Identities=33%  Similarity=0.626  Sum_probs=236.2

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccc-cccccccEEEEEECCCCCEEEEEeCCCcEEEE
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQK-FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLW  100 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iw  100 (321)
                      |...+.+..|.  ..++++++.++++.+|+....        ..+.. +.+|.++|.++++..-+.+|++|+.|.++++|
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW  276 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW  276 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccc--------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence            56778888888  668999999999999976432        23344 88999999999998878899999999999999


Q ss_pred             ecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCe
Q 020798          101 DVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGL  180 (321)
Q Consensus       101 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  180 (321)
                      |..++.+...+.+|.+.+.++...+  ..+++|+.|.+|++|++.++..+..+.+|..+|.++..+  +..+++|+.|++
T Consensus       277 d~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~  352 (537)
T KOG0274|consen  277 DCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT  352 (537)
T ss_pred             ecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce
Confidence            9999999999999999999887754  568888999999999999999999998899999999987  789999999999


Q ss_pred             EEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC-cEEEEEeccCCceeEEEeEEEecCCeE
Q 020798          181 CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG-KILKTYTGHTNSKYCISSTFSVTNGKY  259 (321)
Q Consensus       181 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (321)
                      |++||+.+++++..+.. |...|.++.+.+. ..++.|+.|+.|++||+.+. +.+..+.+|...+..+.     ..+++
T Consensus       353 v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~-----~~~~~  425 (537)
T KOG0274|consen  353 VKVWDPRTGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL-----LRDNF  425 (537)
T ss_pred             EEEEEhhhceeeeeecC-CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc-----cccce
Confidence            99999999999888765 6777888877654 78999999999999999999 88999988877553332     25788


Q ss_pred             EEEeCCCCeEEEEEcccceEEEEecC-CCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          260 IVSGSEDSCVYLWELQSRKVVQKLEG-HTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      |++++.|+.|++||..+++++..+.+ |...|..+++.  ...+++++  .++.+++||++.
T Consensus       426 Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~--~~~~~~l~dl~~  483 (537)
T KOG0274|consen  426 LVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSS--DDGSVKLWDLRS  483 (537)
T ss_pred             eEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEe--cCCeeEEEeccc
Confidence            99999999999999999999999998 67889999887  34555555  468999999865

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9e-33  Score=220.48  Aligned_cols=286  Identities=22%  Similarity=0.393  Sum_probs=231.5

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCC--C-------CCCccccc-ccccccEEEEEECCCCC
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDS--T-------PPSPLQKF-TGHEQGVSDLVFSSDSR   86 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~--~-------~~~~~~~~-~~h~~~i~~~~~~~~~~   86 (321)
                      +.+..|..+|.+++++|++++..+++.+++|.-|+.........  .       ...+...- ++|...+.+++.++||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            45678999999999999999999999999999998765442211  0       11122222 48999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEc
Q 020798           87 FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFN  166 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  166 (321)
                      +|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-...+.+++++.|..+++|++.....+.++.+|.+.|.++...
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL  295 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL  295 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence            99999999999999999999999999999999999999888899999999999999999888888889999999999988


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCC--c
Q 020798          167 RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN--S  244 (321)
Q Consensus       167 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~  244 (321)
                      ..++.+.+|+.|.++++|++..  ..+.++..+...+.+++|-.+ ..+++|+.+|.|.+|++.+.+++......++  +
T Consensus       296 ~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~  372 (479)
T KOG0299|consen  296 SRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP  372 (479)
T ss_pred             cccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccC
Confidence            8888777888999999999943  233444455667788887654 4688999999999999999888877643221  1


Q ss_pred             e-------eEEEeEEEecCCeEEEEeCCCCeEEEEEcccc----eEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          245 K-------YCISSTFSVTNGKYIVSGSEDSCVYLWELQSR----KVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       245 ~-------~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      .       .-++..+..+...++|+|+.+|+|++|.+..+    .++..+. ..+.|++++|+++|..+++|-
T Consensus       373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence            1       12444555577889999999999999999776    3445554 567899999999999777663

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.6e-32  Score=249.78  Aligned_cols=264  Identities=20%  Similarity=0.373  Sum_probs=210.4

Q ss_pred             CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc----c----eeeeeecCc
Q 020798           44 DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA----T----CLKTLIGHT  115 (321)
Q Consensus        44 d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~----~~~~~~~~~  115 (321)
                      +|.+++|+........   ......+..|...|.+++|+|++++|++|+.|+.|++|++...    .    ....+. +.
T Consensus       457 ~gl~~~~~~~~~~~~~---~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~  532 (793)
T PLN00181        457 EGLCKYLSFSKLRVKA---DLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SR  532 (793)
T ss_pred             hhhhhhhcccceEEEE---eeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-cc
Confidence            5556666554332110   0111234568999999999999999999999999999997532    1    112222 34


Q ss_pred             ccEEEEEECCC-CCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceee
Q 020798          116 NYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR-DGTMIVTSSYDGLCRIWDASTGHCMK  193 (321)
Q Consensus       116 ~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~  193 (321)
                      ..+.+++|+|. +.+|++++.||.|++||+.+++.+..+..|...|++++|+| ++.+|++++.|+.|++||++++....
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG  612 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence            56889999874 68899999999999999999998888999999999999997 68899999999999999999887766


Q ss_pred             eeccCCCCCeEEEEEc-cCCCEEEEEecCCeEEEEeCCCCc-EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEE
Q 020798          194 TLIDDENPPVSFVKFS-PNGKFILVGTLDNTLRLWNYSTGK-ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYL  271 (321)
Q Consensus       194 ~~~~~~~~~~~~~~~~-~~g~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v  271 (321)
                      .+..  ...+.++.|+ ++|.+|++|+.|+.|++||+++.+ .+..+.+|...+..+.+    .++.+|++++.|+.|++
T Consensus       613 ~~~~--~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f----~~~~~lvs~s~D~~iki  686 (793)
T PLN00181        613 TIKT--KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF----VDSSTLVSSSTDNTLKL  686 (793)
T ss_pred             EEec--CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE----eCCCEEEEEECCCEEEE
Confidence            6542  3467788885 579999999999999999998765 46667778776555432    26788999999999999


Q ss_pred             EEcccc------eEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          272 WELQSR------KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       272 wd~~~~------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ||+...      ..+..+.+|...+..++|+|++.+||+|+.  |+.|++|+..
T Consensus       687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~--D~~v~iw~~~  738 (793)
T PLN00181        687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE--TNEVFVYHKA  738 (793)
T ss_pred             EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC--CCEEEEEECC
Confidence            999742      567889999999999999999999999994  5899999853

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.5e-31  Score=230.80  Aligned_cols=248  Identities=19%  Similarity=0.326  Sum_probs=191.5

Q ss_pred             ecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-CCEEEEEeCCCcEEEEecCCcc--------eeeee
Q 020798           41 SSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTAT--------CLKTL  111 (321)
Q Consensus        41 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~--------~~~~~  111 (321)
                      |+.++.+++|+...        ..++..+.+|.+.|.+++|+|+ +++|++|+.|+.|++||+.+..        ++..+
T Consensus        50 GG~~gvI~L~~~~r--------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L  121 (568)
T PTZ00420         50 GGLIGAIRLENQMR--------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL  121 (568)
T ss_pred             CCceeEEEeeecCC--------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence            56677888886542        2346678899999999999997 7899999999999999997542        23456


Q ss_pred             ecCcccEEEEEECCCCCE-EEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q 020798          112 IGHTNYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH  190 (321)
Q Consensus       112 ~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  190 (321)
                      .+|...|.+++|+|++.. |++++.|+.|++||+++++....+. |...|.+++|+|+|.+|++++.|+.+++||+++++
T Consensus       122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE  200 (568)
T ss_pred             ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence            789999999999999875 5789999999999999988776665 56789999999999999999999999999999988


Q ss_pred             eeeeeccCCCCCe-----EEEEEccCCCEEEEEecCC----eEEEEeCCC-CcEEEEEeccCCceeEEEeEEEecCCeEE
Q 020798          191 CMKTLIDDENPPV-----SFVKFSPNGKFILVGTLDN----TLRLWNYST-GKILKTYTGHTNSKYCISSTFSVTNGKYI  260 (321)
Q Consensus       191 ~~~~~~~~~~~~~-----~~~~~~~~g~~l~~~~~d~----~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (321)
                      .+..+.. |...+     ....|++++.+|++++.|+    .|+|||+++ .+++..+..+.. ...+...+..+++.++
T Consensus       201 ~i~tl~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        201 IASSFHI-HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIY  278 (568)
T ss_pred             EEEEEec-ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEE
Confidence            7766543 33322     2233568889999988764    799999985 555655533322 2233344455678999


Q ss_pred             EEeCCCCeEEEEEcccceEEEEecC--CCCCeEEEEecCCCc
Q 020798          261 VSGSEDSCVYLWELQSRKVVQKLEG--HTDPVISVASHPTEN  300 (321)
Q Consensus       261 ~~~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~  300 (321)
                      ++|+.|+.|++|++..+.. ..+..  +..++.+++|.|+..
T Consensus       279 lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccccc
Confidence            9999999999999977642 33322  567899999999853

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=3.2e-32  Score=215.94  Aligned_cols=283  Identities=22%  Similarity=0.373  Sum_probs=239.2

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      ..++.++...|..+.+++|+.|..+.++|..        ....+..++||...|..+.++|+...+++++.|..|++|..
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~--------s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~  290 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKP--------SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV  290 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecc--------hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecc
Confidence            4578888888888899999999999999753        34567889999999999999999999999999999999999


Q ss_pred             CCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC--CCCeeEEEEccCCCEEEEEeCCCe
Q 020798          103 PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH--SDPVTAVDFNRDGTMIVTSSYDGL  180 (321)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~  180 (321)
                      ....+......|.++|+.+..+|.|.+|++++.|++..+.|++++.++......  .-.+++.+|+|||..|.+|..||.
T Consensus       291 ~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~  370 (506)
T KOG0289|consen  291 PLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV  370 (506)
T ss_pred             ccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce
Confidence            888777778899999999999999999999999999999999999877665432  234789999999999999999999


Q ss_pred             EEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEE
Q 020798          181 CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYI  260 (321)
Q Consensus       181 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (321)
                      +++||+.++.....+ ..|..+|..++|+.+|-||+++..|+.|++||+++.+..+++......  .+......+.|.+|
T Consensus       371 vkiwdlks~~~~a~F-pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~--~v~s~~fD~SGt~L  447 (506)
T KOG0289|consen  371 VKIWDLKSQTNVAKF-PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK--EVNSLSFDQSGTYL  447 (506)
T ss_pred             EEEEEcCCccccccC-CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc--cceeEEEcCCCCeE
Confidence            999999988765555 457889999999999999999999999999999998887777654432  22233345679999


Q ss_pred             EEeCCCCeEEEEEcc--cceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          261 VSGSEDSCVYLWELQ--SRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       261 ~~~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      +.++.|=.|++++-.  +...+..+..|.+..+.+.|.....+++++|+|  ..++++.+
T Consensus       448 ~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd--~~l~~~a~  505 (506)
T KOG0289|consen  448 GIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD--AILRLYAL  505 (506)
T ss_pred             EeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccch--hheEEeec
Confidence            999888666666632  456677788888899999999999999999976  56877754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.8e-32  Score=212.86  Aligned_cols=247  Identities=23%  Similarity=0.422  Sum_probs=201.6

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      ....+.||+..|+++.||+||.+||||+.+|.|++|...+..        ....+...-..|.-+.|+|.+..|++|+.|
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~--------~~~~~~~e~~dieWl~WHp~a~illAG~~D  169 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG--------EQWKLDQEVEDIEWLKWHPRAHILLAGSTD  169 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc--------eEEEeecccCceEEEEecccccEEEeecCC
Confidence            456688999999999999999999999999999999775432        122232334668889999999999999999


Q ss_pred             CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeC------C------------
Q 020798           95 KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPA------H------------  156 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------~------------  156 (321)
                      |++-+|.+.+....+.+.+|+..+++-.|.|+|+.++++..||+|++|+++++++...+..      +            
T Consensus       170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~  249 (399)
T KOG0296|consen  170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT  249 (399)
T ss_pred             CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence            9999999999877888999999999999999999999999999999999998876655431      0            


Q ss_pred             ---------------------------------CCCeeEEEEcc---CCCEEEEEeCCCeEEEEeCCCCceeeeeccCCC
Q 020798          157 ---------------------------------SDPVTAVDFNR---DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDEN  200 (321)
Q Consensus       157 ---------------------------------~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  200 (321)
                                                       ...+.++.+.|   .-.+.++|+-||+|.+||+.........  .+.
T Consensus       250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~he  327 (399)
T KOG0296|consen  250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EHE  327 (399)
T ss_pred             eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec--cCC
Confidence                                             01122233333   3346778899999999999876544433  455


Q ss_pred             CCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          201 PPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       201 ~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      .+|..+.|.+ ..+|++++.+|.|+.||.++|+++..+.+|...+..+..   .++.+++++++.|++.+||+..
T Consensus       328 ~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l---s~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  328 DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL---SPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEE---cCCCcEEEEecCCCeEEEEecC
Confidence            6799999998 778999999999999999999999999999988765433   4789999999999999999864

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.6e-33  Score=236.45  Aligned_cols=247  Identities=27%  Similarity=0.486  Sum_probs=198.3

Q ss_pred             cccc-cccccEEEEEECCCCCEEEEEeCCCcEEEEecCC--------------------------------c--------
Q 020798           67 QKFT-GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT--------------------------------A--------  105 (321)
Q Consensus        67 ~~~~-~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------------------------------~--------  105 (321)
                      +.+. .|++.|.++.|++||+|||+||.|+.|+||.+..                                .        
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3455 8999999999999999999999999999998643                                0        


Q ss_pred             --------------------ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEE
Q 020798          106 --------------------TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus       106 --------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  165 (321)
                                          +++..+.||.+.|..+.|+.+ ++|++++.|.++++|++...+++..| .|.+-|++++|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaF  417 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAF  417 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEe
Confidence                                011234689999999999975 68999999999999999999999887 48999999999


Q ss_pred             cc-CCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCC-
Q 020798          166 NR-DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN-  243 (321)
Q Consensus       166 ~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-  243 (321)
                      +| |.++|++|+-|+.++||++...+.+. +. +-..-|+.++|.|+|++.++|+.+|.+++|+....++.....-+.. 
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVVD-WN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeEe-eh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence            99 67799999999999999998765432 22 2335689999999999999999999999999988777665532211 


Q ss_pred             -----ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC--CCeEEEEecCCCceEEEEeecCCccEEEc
Q 020798          244 -----SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT--DPVISVASHPTENIIASGALDNDRTVKIW  316 (321)
Q Consensus       244 -----~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~d~~~~i~iw  316 (321)
                           ........+.+.+...+++.+.|..|||||.+...++.+++|+.  .......|+.||++|++|+.  |..|+||
T Consensus       496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se--Ds~VYiW  573 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE--DSWVYIW  573 (712)
T ss_pred             CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec--CceEEEE
Confidence                 11112233333344456677889999999999999999999864  35678899999999999994  5789999


Q ss_pred             ccc
Q 020798          317 TQE  319 (321)
Q Consensus       317 ~~~  319 (321)
                      +.+
T Consensus       574 ~~~  576 (712)
T KOG0283|consen  574 KND  576 (712)
T ss_pred             eCC
Confidence            974

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.7e-33  Score=205.56  Aligned_cols=279  Identities=22%  Similarity=0.442  Sum_probs=215.2

Q ss_pred             EEEEECC--CCCE-EEEec-----CCceEEEeeccccCCCCCCCCCcccccc--cccccEEEEEECCC-CCEEEEEeCCC
Q 020798           27 SSVKFSH--DGRL-LASSS-----ADKTLLTYSLSSISNSDSTPPSPLQKFT--GHEQGVSDLVFSSD-SRFLVSASDDK   95 (321)
Q Consensus        27 ~~~~~s~--~g~~-l~~~~-----~d~~v~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~-~~~l~~~~~d~   95 (321)
                      .++.|||  ++++ +|++.     ..|.+.|-++.+        ...++.+.  .-.+++.+++|+++ .+.+++++.||
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~--------~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDG   83 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTD--------PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDG   83 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCC--------CCCeEEEEeeecccceeEeeecCCCcceEEEEecCc
Confidence            4678998  3433 23322     256677765532        11122221  23578999999986 46788999999


Q ss_pred             cEEEEecCCc-ceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC-CCEE
Q 020798           96 TIRLWDVPTA-TCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD-GTMI  172 (321)
Q Consensus        96 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l  172 (321)
                      ++++||+... .++..++.|...|.++.|++.. ..+++++.|++|++|+...++.+.++.+|...|....|+|. .+.+
T Consensus        84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf  163 (311)
T KOG0277|consen   84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF  163 (311)
T ss_pred             eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE
Confidence            9999996443 4677788999999999999864 45788899999999999988999999999999999999995 6789


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEeCCCCc-EEEEEeccCCceeEEEe
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYSTGK-ILKTYTGHTNSKYCISS  250 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~  250 (321)
                      ++++.|+++++||++....... +..+...+.++.|+. +...+++|+.|+.|+.||+++-+ ++..+.+|.-.+..+  
T Consensus       164 as~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkv--  240 (311)
T KOG0277|consen  164 ASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKV--  240 (311)
T ss_pred             EEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEE--
Confidence            9999999999999986543333 334556788888887 56778899999999999998754 567777776554443  


Q ss_pred             EEEecCCeEEEEeCCCCeEEEEEcccc-eEEEEecCCCCCeEEEEecCC-CceEEEEeecCCccEEEccc
Q 020798          251 TFSVTNGKYIVSGSEDSCVYLWELQSR-KVVQKLEGHTDPVISVASHPT-ENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~d~~~~i~iw~~  318 (321)
                      .+++.....||+++.|-++|+||...+ ..+.+.+.|+..|..+.|++- +.++|+.+.|  +.++||+.
T Consensus       241 k~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD--e~l~Vw~p  308 (311)
T KOG0277|consen  241 KFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWD--ELLYVWNP  308 (311)
T ss_pred             ecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccc--cceeeecc
Confidence            344556778999999999999999754 455667789999999999875 5789999987  58999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.4e-34  Score=229.21  Aligned_cols=251  Identities=24%  Similarity=0.460  Sum_probs=210.6

Q ss_pred             CCCcccccccccccEEEEEECC-CCCEEEEEeCCCcEEEEecCC-cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcE
Q 020798           62 PPSPLQKFTGHEQGVSDLVFSS-DSRFLVSASDDKTIRLWDVPT-ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETV  139 (321)
Q Consensus        62 ~~~~~~~~~~h~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  139 (321)
                      |...+..+.+|..+|+++.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..+|..++|+++|..|++++.|+.|
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence            3345567899999999999999 789999999999999999876 78999999999999999999999999999999999


Q ss_pred             EEEecCCCEEEEEEeCCCCCeeEEEEccCC-CEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE
Q 020798          140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDG-TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG  218 (321)
Q Consensus       140 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  218 (321)
                      ++||+++|++...+.. ...++++.|+|++ +.|++|+.|+.|+.||+++++.++.+ ..+-..+..+.|-++|+.++++
T Consensus       283 KlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-d~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-DRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-HhhhhheeeeEEccCCceEeee
Confidence            9999999999988864 4567899999998 78999999999999999999877665 3455678899999999999999


Q ss_pred             ecCCeEEEEeCCCCcEEEEEeccC-CceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce---EEEEecCCC--CCeEE
Q 020798          219 TLDNTLRLWNYSTGKILKTYTGHT-NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK---VVQKLEGHT--DPVIS  292 (321)
Q Consensus       219 ~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~h~--~~v~~  292 (321)
                      +.|++++||+.+.+-++....... ....+   +...|++.++++-+-|..|.+|.+...-   ..+.+++|.  +--..
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~---~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~  437 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPC---LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ  437 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcc---eecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence            999999999998876665443221 11222   3335789999999999999999975432   234577885  34577


Q ss_pred             EEecCCCceEEEEeecCCccEEEcccc
Q 020798          293 VASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       293 ~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +.|||||++|++|.  .+|.+.+||-+
T Consensus       438 v~fSpDG~~l~SGd--sdG~v~~wdwk  462 (503)
T KOG0282|consen  438 VDFSPDGRTLCSGD--SDGKVNFWDWK  462 (503)
T ss_pred             EEEcCCCCeEEeec--CCccEEEeech
Confidence            89999999999996  66899999964

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=4e-32  Score=226.77  Aligned_cols=286  Identities=26%  Similarity=0.433  Sum_probs=237.7

Q ss_pred             CcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEE-EEECC-CCCEE
Q 020798           11 RPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSD-LVFSS-DSRFL   88 (321)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~~~-~~~~l   88 (321)
                      ..|++.+.+.||...|..++..+. ..++++|.||++++|+.....      ......+.+|.+-|.. +++.+ ++-.+
T Consensus         2 ~~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~------~l~~~~~~~~~g~i~~~i~y~e~~~~~l   74 (745)
T KOG0301|consen    2 PQYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQ------YLETHAFEGPKGFIANSICYAESDKGRL   74 (745)
T ss_pred             CcceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcc------cccceecccCcceeeccceeccccCcce
Confidence            458899999999999998887654 478999999999999764322      1223345667777776 77775 44468


Q ss_pred             EEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC
Q 020798           89 VSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      ++|+.|..+.+|......++..+.+|...|.++....++. +++|++|.++++|..  +++...+++|..+|++++.-|+
T Consensus        75 ~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e  151 (745)
T KOG0301|consen   75 VVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE  151 (745)
T ss_pred             EeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCC
Confidence            9999999999999999999999999999999998887776 999999999999964  5667779999999999999998


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEE
Q 020798          169 GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI  248 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  248 (321)
                      + .+++|+.|.+|++|.-  ++..+.+ ..|...|..+++-+++. +++++.||.|++|++ +++.+..+.+|+..++++
T Consensus       152 ~-~~vTgsaDKtIklWk~--~~~l~tf-~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsi  225 (745)
T KOG0301|consen  152 N-TYVTGSADKTIKLWKG--GTLLKTF-SGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSI  225 (745)
T ss_pred             C-cEEeccCcceeeeccC--Cchhhhh-ccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEE
Confidence            8 7899999999999975  3444444 45777899999988764 678999999999998 788899999999988888


Q ss_pred             EeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          249 SSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +.   ..+++.++++++|+++++|+..  ++.+.+.-....|+++.+-++|++++.||   ||.|+||..++
T Consensus       226 s~---~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~S---DG~VrVfT~~k  289 (745)
T KOG0301|consen  226 SM---ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGS---DGRVRVFTVDK  289 (745)
T ss_pred             Ee---cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEecc---CceEEEEEecc
Confidence            73   2567889999999999999976  77777776777999999999998777664   69999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-33  Score=206.38  Aligned_cols=243  Identities=25%  Similarity=0.470  Sum_probs=201.3

Q ss_pred             cccEEEEEECCC-CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-CCEEEEEeCCCcEEEE
Q 020798           23 LRAISSVKFSHD-GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLW  100 (321)
Q Consensus        23 ~~~v~~~~~s~~-g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~d~~i~iw  100 (321)
                      ...+..++|+++ .+.+++++.||.+++||+.       .+..|+..++.|++.|.++.|++. ++.+++++.|++|++|
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~-------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW  132 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLT-------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW  132 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccC-------CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence            567889999985 4678899999999999843       455689999999999999999985 5677888999999999


Q ss_pred             ecCCcceeeeeecCcccEEEEEECCC-CCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEcc-CCCEEEEEeCC
Q 020798          101 DVPTATCLKTLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR-DGTMIVTSSYD  178 (321)
Q Consensus       101 d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  178 (321)
                      +...+..+.++.+|..-|....|+|. .+.+++++.|+.+++||++.......++.|...+.++.|+. +...+++++.|
T Consensus       133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd  212 (311)
T KOG0277|consen  133 DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVD  212 (311)
T ss_pred             cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCC
Confidence            99988889999999999999999995 68999999999999999986544445889999999999997 45678899999


Q ss_pred             CeEEEEeCCCCceeeeeccCCCCCeEEEEEccC-CCEEEEEecCCeEEEEeCCCC-cEEEEEeccCCceeEEEeEEEecC
Q 020798          179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN-GKFILVGTLDNTLRLWNYSTG-KILKTYTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       179 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  256 (321)
                      +.|+.||+++-+.....+..++..|..++|+|. ...|++++.|-+++|||...+ ..+..+..|+.-..  ...++..+
T Consensus       213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~--g~Dws~~~  290 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVC--GLDWSLFD  290 (311)
T ss_pred             ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEe--cccccccc
Confidence            999999999765544445678888999999996 456788999999999998754 34555555544332  33444557


Q ss_pred             CeEEEEeCCCCeEEEEEc
Q 020798          257 GKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~  274 (321)
                      +.++|+.+.|+.++||+-
T Consensus       291 ~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  291 PGQVASTGWDELLYVWNP  308 (311)
T ss_pred             Cceeeecccccceeeecc
Confidence            889999999999999983

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.5e-31  Score=201.78  Aligned_cols=274  Identities=20%  Similarity=0.312  Sum_probs=219.1

Q ss_pred             CcccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEE
Q 020798           22 HLRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLW  100 (321)
Q Consensus        22 h~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iw  100 (321)
                      -.+.|.+++||| ...+++.+|.|++|++|++..--     ...+ .....|.++|.+++|+.||..+++|+.|+++++|
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----QLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCC-----cccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence            457899999999 45567799999999999987521     1112 3345688999999999999999999999999999


Q ss_pred             ecCCcceeeeeecCcccEEEEEECCCCC--EEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCC
Q 020798          101 DVPTATCLKTLIGHTNYVFCVNFNPQSN--MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD  178 (321)
Q Consensus       101 d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  178 (321)
                      |+.+++ ...+..|.++|.++.|-+...  .|++|++|.+|+.||.+...++.++... ..+.++..  ...+++++..+
T Consensus       100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv--~~pm~vVata~  175 (347)
T KOG0647|consen  100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV--LYPMAVVATAE  175 (347)
T ss_pred             EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc--cCceeEEEecC
Confidence            999996 566788999999999987665  7999999999999999998888877653 45555543  34578888899


Q ss_pred             CeEEEEeCCCCce-eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC--cEEEEEeccCC------ceeEEE
Q 020798          179 GLCRIWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG--KILKTYTGHTN------SKYCIS  249 (321)
Q Consensus       179 g~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~------~~~~~~  249 (321)
                      ..|.+|+++++.. .+.+.......+.+++..++....+.|+.+|.+-|..+..+  +.-..+..|..      .++.+.
T Consensus       176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN  255 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN  255 (347)
T ss_pred             CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence            9999999976532 23333334455778888888888899999999999988775  33445555542      266666


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEE
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG  305 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  305 (321)
                      ...+.|.-..|+|+++||++.+||-..+..++..+.|..+|++.+|+.+|.++|-+
T Consensus       256 si~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  256 SIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            66555667789999999999999998888888888899999999999999999876

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-31  Score=228.00  Aligned_cols=295  Identities=24%  Similarity=0.453  Sum_probs=227.8

Q ss_pred             cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      -.++...+.+|.++|..++|+|++.++++|+.|..|++|+...        ...+.++.+|-+.|+.+.|++.-.+++++
T Consensus        40 M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~--------rrclftL~GHlDYVRt~~FHheyPWIlSA  111 (1202)
T KOG0292|consen   40 MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT--------RRCLFTLLGHLDYVRTVFFHHEYPWILSA  111 (1202)
T ss_pred             hhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc--------ceehhhhccccceeEEeeccCCCceEEEc
Confidence            3445566789999999999999999999999999999997643        45677889999999999999999999999


Q ss_pred             eCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC--------C----------------
Q 020798           92 SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT--------G----------------  147 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~--------~----------------  147 (321)
                      |+|.+|+||+..+.+++..+.||.-+|.|..|+|....+++++-|.+||+||+..        +                
T Consensus       112 SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLf  191 (1202)
T KOG0292|consen  112 SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLF  191 (1202)
T ss_pred             cCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhc
Confidence            9999999999999999999999999999999999999999999999999999741        1                


Q ss_pred             -----EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce-eeeeccCCCCCeEEEEEccCCCEEEEEecC
Q 020798          148 -----KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLD  221 (321)
Q Consensus       148 -----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d  221 (321)
                           -....+.+|...|.-++|+|.-.++++|+.|..|++|.....+. .......|...|+++-|+|....+++.+.|
T Consensus       192 g~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsED  271 (1202)
T KOG0292|consen  192 GQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSED  271 (1202)
T ss_pred             CCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCC
Confidence                 01134567888999999999999999999999999998764332 112233566789999999999999999999


Q ss_pred             CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC--------------------------CeEEEEEcc
Q 020798          222 NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED--------------------------SCVYLWELQ  275 (321)
Q Consensus       222 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------------------g~i~vwd~~  275 (321)
                      ++|+|||+...+.++.+......-++++.   .|...++|+|-..                          ..|+.+|+.
T Consensus       272 ksirVwDm~kRt~v~tfrrendRFW~laa---hP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~  348 (1202)
T KOG0292|consen  272 KSIRVWDMTKRTSVQTFRRENDRFWILAA---HPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLR  348 (1202)
T ss_pred             ccEEEEecccccceeeeeccCCeEEEEEe---cCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeecc
Confidence            99999999999888888654444444332   3455555544332                          333334443


Q ss_pred             cce--EEEEecCC---CCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          276 SRK--VVQKLEGH---TDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       276 ~~~--~~~~~~~h---~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      +.+  .+..++..   -.+..+++++|....+..++.-.++.-.++.
T Consensus       349 t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~  395 (1202)
T KOG0292|consen  349 TQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQ  395 (1202)
T ss_pred             ccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEE
Confidence            322  12223322   2678899999997765555432345544443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.1e-30  Score=187.58  Aligned_cols=292  Identities=24%  Similarity=0.416  Sum_probs=228.9

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCC----CC--CCCC-cccccccccccEEEEEECCCCCEEEEEeCC
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNS----DS--TPPS-PLQKFTGHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~----~~--~~~~-~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      ....|.+++|+|.|.+.|+|++..++++-..-.....    +.  .|+. ....-+.|++.|+|.+|+|+|+++++|++|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            4568999999999999999999999988644332211    00  1111 112234688999999999999999999999


Q ss_pred             CcEEEEecCCccee-----eeeecCcccEEEEEECCC----CCEEEEee-CCCcEEEEecCCCEEEEEEeCCCCCeeEEE
Q 020798           95 KTIRLWDVPTATCL-----KTLIGHTNYVFCVNFNPQ----SNMIVSGA-FDETVRIWDVKTGKCLKVLPAHSDPVTAVD  164 (321)
Q Consensus        95 ~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  164 (321)
                      ..|++.-+...++.     ..+.-|.+.|..++|-.+    +..|++++ .|..|++=|...++....+.+|.+.|.++ 
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-  189 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-  189 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence            99999766543321     245568899999999643    34566654 46677777888888888999999988776 


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC------CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          165 FNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD------ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       165 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      ++-++-.+++|+.|.+|++||++-..++..+-..      ....+..++..|.|++|++|..|....+||++.++.++.+
T Consensus       190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f  269 (350)
T KOG0641|consen  190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF  269 (350)
T ss_pred             EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence            3446789999999999999999988777665322      1246888999999999999999999999999999999999


Q ss_pred             eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc----eEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEE
Q 020798          239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR----KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVK  314 (321)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~  314 (321)
                      ..|...+.|+.+   .|...++++++.|..|++=|++..    -.+.....|.+.+..+.|+|..-.+++.|.  |+++.
T Consensus       270 ~phsadir~vrf---sp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssa--dkt~t  344 (350)
T KOG0641|consen  270 HPHSADIRCVRF---SPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSA--DKTAT  344 (350)
T ss_pred             CCCccceeEEEe---CCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccC--cceEE
Confidence            999887666543   477899999999999999998642    123445669999999999999988988884  58999


Q ss_pred             Ecccc
Q 020798          315 IWTQE  319 (321)
Q Consensus       315 iw~~~  319 (321)
                      +|.+.
T Consensus       345 lwa~~  349 (350)
T KOG0641|consen  345 LWALN  349 (350)
T ss_pred             EeccC
Confidence            99764

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3e-31  Score=227.74  Aligned_cols=221  Identities=17%  Similarity=0.335  Sum_probs=181.5

Q ss_pred             eccCCcccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC-CEEEEEeCCC
Q 020798           18 TLNGHLRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS-RFLVSASDDK   95 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d~   95 (321)
                      .+.||.+.|++++|+| ++++|++|+.|+.|++|++...... .....++..+.+|...|.+++|+|++ ++|++++.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~-~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT-QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc-cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            3679999999999999 8899999999999999998643211 11224566788999999999999985 6899999999


Q ss_pred             cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCC-eeEEEEccCCCEEEE
Q 020798           96 TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP-VTAVDFNRDGTMIVT  174 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~  174 (321)
                      .|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|... ...+.|.+++..+++
T Consensus       149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence            9999999999888888899999999999999999999999999999999999988888888764 346788888877776


Q ss_pred             Ee----CCCeEEEEeCCCCceeee-eccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcEEEEEe
Q 020798          175 SS----YDGLCRIWDASTGHCMKT-LIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       175 ~~----~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~~~~~~  239 (321)
                      ++    .|+.|++||+++...... ........+....|++++++|++++ .|+.|++||+.+++++....
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS  299 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence            54    478999999986543222 2222334455667899999998887 59999999999988776543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-31  Score=222.45  Aligned_cols=273  Identities=25%  Similarity=0.426  Sum_probs=219.1

Q ss_pred             EEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcce
Q 020798           28 SVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC  107 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  107 (321)
                      -+.|+ ..+.||+|. ...+.+|+-....        .......+...|+++.|+++|.+|++|..+|.|.|||....+.
T Consensus       182 lldWs-s~n~laVal-g~~vylW~~~s~~--------v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~  251 (484)
T KOG0305|consen  182 LLDWS-SANVLAVAL-GQSVYLWSASSGS--------VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK  251 (484)
T ss_pred             Hhhcc-cCCeEEEEe-cceEEEEecCCCc--------eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence            35677 455677664 5678889654321        1122223378899999999999999999999999999999888


Q ss_pred             eeeeec-CcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE-EeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEe
Q 020798          108 LKTLIG-HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV-LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD  185 (321)
Q Consensus       108 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  185 (321)
                      +..+.+ |...|-+++|+  +..+.+|+.++.|..+|++..+.... +..|...|..+.|++++.++++|+.|+.+.+||
T Consensus       252 ~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd  329 (484)
T KOG0305|consen  252 TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD  329 (484)
T ss_pred             cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence            888888 99999999998  57899999999999999988765444 788999999999999999999999999999999


Q ss_pred             CCCCceeeeeccCCCCCeEEEEEcc-CCCEEEEEe--cCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEE
Q 020798          186 ASTGHCMKTLIDDENPPVSFVKFSP-NGKFILVGT--LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVS  262 (321)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (321)
                      ....+....+ ..|...|..++|+| ....||+|+  .|+.|++||..+++.+.......   ..-...|.....+++.+
T Consensus       330 ~~~~~p~~~~-~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~st  405 (484)
T KOG0305|consen  330 GLSPEPKFTF-TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLST  405 (484)
T ss_pred             CCCccccEEE-eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEe
Confidence            9666555544 46778899999999 456777764  69999999999998888764321   11223344443444443


Q ss_pred             -eCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          263 -GSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       263 -~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                       |..++.|.||+..+.+.+..+.+|..+|..++++|||..+++|+.|  .++++|+.
T Consensus       406 hG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D--ETlrfw~~  460 (484)
T KOG0305|consen  406 HGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD--ETLRFWNL  460 (484)
T ss_pred             cCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc--CcEEeccc
Confidence             4577899999999999999999999999999999999999999954  78999986

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-31  Score=224.33  Aligned_cols=279  Identities=25%  Similarity=0.444  Sum_probs=230.9

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      ...|+|++-+|+...||+|..||.|++|++...        .+...+.+|+..|+++.|...|..|++|+.|+.|.+||+
T Consensus        65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~--------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDl  136 (888)
T KOG0306|consen   65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESE--------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDL  136 (888)
T ss_pred             cceEEEeeccCCcceEEEEecCceEEeeccCCC--------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEe
Confidence            358999999999999999999999999987532        456678899999999999999999999999999999999


Q ss_pred             CCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q 020798          103 PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR  182 (321)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  182 (321)
                      -...-...+.+|.+.|+..-|....+++++.+.|+.|++||+.+..+..+.-.|.+.++.+++.+  +.+++++.|+.++
T Consensus       137 V~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~  214 (888)
T KOG0306|consen  137 VGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELK  214 (888)
T ss_pred             ccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceE
Confidence            87777888999999999988888788999999999999999999999999999999999999987  6889999999999


Q ss_pred             EEeCCC----------------C--------ceeee----------------------e---------------------
Q 020798          183 IWDAST----------------G--------HCMKT----------------------L---------------------  195 (321)
Q Consensus       183 ~~d~~~----------------~--------~~~~~----------------------~---------------------  195 (321)
                      +|++..                |        +.+..                      +                     
T Consensus       215 v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka  294 (888)
T KOG0306|consen  215 VWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKA  294 (888)
T ss_pred             EEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhc
Confidence            998810                0        00000                      0                     


Q ss_pred             c--------------------------------------------------------------------------cCCCC
Q 020798          196 I--------------------------------------------------------------------------DDENP  201 (321)
Q Consensus       196 ~--------------------------------------------------------------------------~~~~~  201 (321)
                      .                                                                          ..|..
T Consensus       295 ~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~  374 (888)
T KOG0306|consen  295 ETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRS  374 (888)
T ss_pred             cccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchh
Confidence            0                                                                          00111


Q ss_pred             CeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEE
Q 020798          202 PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ  281 (321)
Q Consensus       202 ~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  281 (321)
                      .|..++++.+...++ ++..+.+++|+..+.+.++++...    +.+.+.|. |.+++++.|...|.+.+||+.+..++.
T Consensus       375 dVRsl~vS~d~~~~~-Sga~~SikiWn~~t~kciRTi~~~----y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~E  448 (888)
T KOG0306|consen  375 DVRSLCVSSDSILLA-SGAGESIKIWNRDTLKCIRTITCG----YILASKFV-PGDRYIVLGTKNGELQVFDLASASLVE  448 (888)
T ss_pred             heeEEEeecCceeee-ecCCCcEEEEEccCcceeEEeccc----cEEEEEec-CCCceEEEeccCCceEEEEeehhhhhh
Confidence            133344554443333 344678999999999999998653    44555554 678999999999999999999999999


Q ss_pred             EecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          282 KLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       282 ~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .+++|.+.|++++.+||+..+++||.  |.+|++||.+
T Consensus       449 ti~AHdgaIWsi~~~pD~~g~vT~sa--DktVkfWdf~  484 (888)
T KOG0306|consen  449 TIRAHDGAIWSISLSPDNKGFVTGSA--DKTVKFWDFK  484 (888)
T ss_pred             hhhccccceeeeeecCCCCceEEecC--CcEEEEEeEE
Confidence            99999999999999999999999995  5799999975

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-32  Score=203.10  Aligned_cols=252  Identities=28%  Similarity=0.474  Sum_probs=214.7

Q ss_pred             cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      ..+-.-++.||+++|....++.+..+.|+++.|-+.++|+--..        ..+..+ .|+.-|..++|+.|.++|++|
T Consensus        48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg--------delhsf-~hkhivk~~af~~ds~~lltg  118 (334)
T KOG0278|consen   48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG--------DELHSF-EHKHIVKAVAFSQDSNYLLTG  118 (334)
T ss_pred             CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh--------hhhhhh-hhhheeeeEEecccchhhhcc
Confidence            34456788999999999999999999999999999999975332        223333 588899999999999999999


Q ss_pred             eCCCcEEEEecCCcc-eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC
Q 020798           92 SDDKTIRLWDVPTAT-CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT  170 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (321)
                      +.+.-++|||+...+ +...+.+|++.|..+.|....+.|+++..|++||+||.+++..++.+.. +.+|+++.++++|+
T Consensus       119 g~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~  197 (334)
T KOG0278|consen  119 GQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGR  197 (334)
T ss_pred             chHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCC
Confidence            999999999997653 4567889999999999999889999999999999999999999988864 67899999999997


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE-eccCCceeEEE
Q 020798          171 MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY-TGHTNSKYCIS  249 (321)
Q Consensus       171 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~  249 (321)
                      ++ +....+.|.+||..+...++...  ....|.+..++|+...+++|+.|..++.||..++..+..+ .+|.+++.|+.
T Consensus       198 il-Tia~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVr  274 (334)
T KOG0278|consen  198 IL-TIAYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVR  274 (334)
T ss_pred             EE-EEecCceeEEeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEE
Confidence            65 55566789999999877766653  3456888999999999999999999999999999999987 88888877765


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceE
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKV  279 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (321)
                      +   .|+|...++|++||+|++|.+..++.
T Consensus       275 F---SPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  275 F---SPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             E---CCCCceeeccCCCceEEEEEecCCCc
Confidence            3   48999999999999999999865543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-30  Score=198.28  Aligned_cols=260  Identities=22%  Similarity=0.388  Sum_probs=209.4

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCC--EEEEEeCCCc
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR--FLVSASDDKT   96 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~--~l~~~~~d~~   96 (321)
                      +..|.+.++++|.+  |.++|+||.|.+|.+||+...        ..+..+-.|.+.|+++.|.+.-.  .|++|+.||.
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~--------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~  108 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKR--------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH  108 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccch--------hhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence            46899999999975  899999999999999998642        23456678999999999998764  8999999999


Q ss_pred             EEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEe
Q 020798           97 IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS  176 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  176 (321)
                      |.+|+.....++..+++|...|+.++.+|.++.-++.+.|+.+++|++-.|+.-...+. ....+.+.|+|.|.+|+.+.
T Consensus       109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEe
Confidence            99999999999999999999999999999999999999999999999988875554443 23345699999999998887


Q ss_pred             CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecC
Q 020798          177 YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       177 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (321)
                      .++ |-+|.+.+......+...  ..+.++.|. ++..+++|..|+.|++||..+..+...+.+|...+..+. .+..++
T Consensus       188 ~~~-i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~-~~~~~~  262 (362)
T KOG0294|consen  188 RNK-IDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIA-SYTNPE  262 (362)
T ss_pred             ccE-EEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeE-EEecCC
Confidence            764 778988876655544322  234455554 566889999999999999999899999999988776554 344567


Q ss_pred             CeEEEEeCCCCeEEEEEcccc-----eEEEEecCCCCCeEEEEe
Q 020798          257 GKYIVSGSEDSCVYLWELQSR-----KVVQKLEGHTDPVISVAS  295 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~  295 (321)
                      +.+|+++++||.|+|||++..     +++..+.. ..+++|+..
T Consensus       263 ~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  263 HEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             ceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence            899999999999999999765     34444433 456666654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-31  Score=203.67  Aligned_cols=292  Identities=24%  Similarity=0.422  Sum_probs=235.5

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      +++.+.|.||..+|..++-.....++.+++.|.+.++|.++.        ...+..+.+|.+.|++++|++.+.++++++
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es--------g~CL~~Y~GH~GSVNsikfh~s~~L~lTaS  209 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES--------GACLATYTGHTGSVNSIKFHNSGLLLLTAS  209 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc--------ccceeeecccccceeeEEeccccceEEEcc
Confidence            457788999999999999988888999999999999998754        356788999999999999999999999999


Q ss_pred             CCCcEEEEec------CCc----------------------------------ceeeeeecCcccEEEEEECCCCCEEEE
Q 020798           93 DDKTIRLWDV------PTA----------------------------------TCLKTLIGHTNYVFCVNFNPQSNMIVS  132 (321)
Q Consensus        93 ~d~~i~iwd~------~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~  132 (321)
                      .|++..||..      ..+                                  .++..+.+|.+.|.++.|-..+.++++
T Consensus       210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vT  289 (481)
T KOG0300|consen  210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVT  289 (481)
T ss_pred             CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeee
Confidence            9999999962      110                                  023356789999999999999999999


Q ss_pred             eeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCC
Q 020798          133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNG  212 (321)
Q Consensus       133 ~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g  212 (321)
                      +++|.+..+||+++++.+..+.+|....+.++-+|..+++++.+.|.+.++||.+..-.....+..+...++++.|..+.
T Consensus       290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd  369 (481)
T KOG0300|consen  290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD  369 (481)
T ss_pred             eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999985433344556777889999998776


Q ss_pred             CEEEEEecCCeEEEEeCCCCc-EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEE----EecCCC
Q 020798          213 KFILVGTLDNTLRLWNYSTGK-ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ----KLEGHT  287 (321)
Q Consensus       213 ~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~h~  287 (321)
                      + +++|+.|.+|++||+++.+ ++..+... .+...+..   ...+..++.--.+..|++||+...++..    .-.+|.
T Consensus       370 ~-vVSgSDDrTvKvWdLrNMRsplATIRtd-S~~NRvav---s~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHr  444 (481)
T KOG0300|consen  370 R-VVSGSDDRTVKVWDLRNMRSPLATIRTD-SPANRVAV---SKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHR  444 (481)
T ss_pred             c-eeecCCCceEEEeeeccccCcceeeecC-CccceeEe---ecCCceEEeccCCceEEEEecCCCccccCCcccccccc
Confidence            4 7789999999999998754 45555432 22222322   2446688888889999999997654321    235798


Q ss_pred             CCeEEEEecCCC--ceEEEEeecCCccEEEcccc
Q 020798          288 DPVISVASHPTE--NIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       288 ~~v~~~~~~p~~--~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .-|.+++|..+.  .-|.++++|  +++.=|++.
T Consensus       445 RMV~c~AW~eehp~cnLftcGFD--R~v~gW~in  476 (481)
T KOG0300|consen  445 RMVTCCAWLEEHPACNLFTCGFD--RMVAGWKIN  476 (481)
T ss_pred             eeeeeeeccccCccccccccccc--ceeeeeEec
Confidence            899999996442  345566665  788888764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3.8e-31  Score=197.00  Aligned_cols=243  Identities=23%  Similarity=0.416  Sum_probs=205.1

Q ss_pred             cccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceee--eeecCcccEEEEEECCC-CCEEEEeeCCCcEEEEe
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLK--TLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWD  143 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd  143 (321)
                      +.+.+|.+.+.+++|+.+|..|++|+.|+++.+|+++..+...  ...+|.+.|-.++|+|. ...|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5567899999999999999999999999999999998765433  34689988999999875 56899999999999999


Q ss_pred             cCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCe
Q 020798          144 VKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT  223 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~  223 (321)
                      ++.+++...+......+ -+.|+|+|+++++++.|..|.+.|.++.+.+....  ....+..+.|+-++.+++.....|.
T Consensus        94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCCEEEEecCCce
Confidence            99999988876554444 57899999999999999999999999877655432  2334667888888888888888899


Q ss_pred             EEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEE
Q 020798          224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA  303 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  303 (321)
                      |.|......+++..++.|.....|+.  + .|+|++||+|+.|..+.+||+...-++..+..+.-||+.++|+.+|++||
T Consensus       171 v~ILsypsLkpv~si~AH~snCicI~--f-~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCICIE--F-DPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             EEEEeccccccccccccCCcceEEEE--E-CCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence            99999999999999999986655443  3 47999999999999999999998878888888999999999999999999


Q ss_pred             EEeecCCccEEEcc
Q 020798          304 SGALDNDRTVKIWT  317 (321)
Q Consensus       304 s~~~d~~~~i~iw~  317 (321)
                      +||+|  ..|-|=+
T Consensus       248 SaSED--h~IDIA~  259 (313)
T KOG1407|consen  248 SASED--HFIDIAE  259 (313)
T ss_pred             ccCcc--ceEEeEe
Confidence            99965  5565543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-31  Score=211.12  Aligned_cols=253  Identities=28%  Similarity=0.447  Sum_probs=205.7

Q ss_pred             CCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc---ceeeeeecCcccEEEEEECCCCCEEEEeeCCCc
Q 020798           62 PPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA---TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDET  138 (321)
Q Consensus        62 ~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  138 (321)
                      |....+.+..|.+.|.-+.||++|++||+++.|.+..+|.+...   +..+++.+|..+|..+.|+||.++|++|+.+..
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~  292 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV  292 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence            34456678899999999999999999999999999999987543   346788999999999999999999999999999


Q ss_pred             EEEEecCCCEEEEEEeC-CCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEE
Q 020798          139 VRIWDVKTGKCLKVLPA-HSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       139 i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  217 (321)
                      +.+||..+|.+...++. +...+.+++|.|||..+++|+.|+.+..||+.... ...+.....+.+..+++.+||+++++
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~  371 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLL  371 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEE
Confidence            99999999988777653 35778999999999999999999999999987543 33333334466889999999999999


Q ss_pred             EecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCC--CeEEEEe
Q 020798          218 GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD--PVISVAS  295 (321)
Q Consensus       218 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~  295 (321)
                      .+.|..|++|+..+.........+. +   +.....+.+++++++.=.+..+++||++..+++.++.||..  .|..-+|
T Consensus       372 v~~d~~i~l~~~e~~~dr~lise~~-~---its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF  447 (519)
T KOG0293|consen  372 VTVDKKIRLYNREARVDRGLISEEQ-P---ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF  447 (519)
T ss_pred             EecccceeeechhhhhhhccccccC-c---eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence            9999999999987654443333332 2   22333347899999999999999999999999999999864  4555556


Q ss_pred             cCC-CceEEEEeecCCccEEEcccccC
Q 020798          296 HPT-ENIIASGALDNDRTVKIWTQEKE  321 (321)
Q Consensus       296 ~p~-~~~l~s~~~d~~~~i~iw~~~~~  321 (321)
                      ... ..++|+||+  |+.|+||+.+.+
T Consensus       448 gg~~~~fiaSGSE--D~kvyIWhr~sg  472 (519)
T KOG0293|consen  448 GGGNDKFIASGSE--DSKVYIWHRISG  472 (519)
T ss_pred             CCCCcceEEecCC--CceEEEEEccCC
Confidence            544 488999995  478999997653

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.9e-32  Score=211.69  Aligned_cols=284  Identities=19%  Similarity=0.344  Sum_probs=226.8

Q ss_pred             eeeeccCCcccEEEEEECCCC-CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           15 LTQTLNGHLRAISSVKFSHDG-RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      +...|.||.++|.|++=+|.. ..+|+|+.||.|++|++...        ..+..+..|.+.|..|++..  ..++++++
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--------~~~~~f~AH~G~V~Gi~v~~--~~~~tvgd  127 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--------ECIRTFKAHEGLVRGICVTQ--TSFFTVGD  127 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh--------hhhheeecccCceeeEEecc--cceEEecC
Confidence            356679999999999999987 78999999999999998642        34678889999999999987  56889999


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC-EE
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT-MI  172 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l  172 (321)
                      |.+|+.|.+... +.+++.+ ...+..+..+..++.+++||.  .|.+||.+...+++.+.-..+.+.++.|+|..+ .|
T Consensus       128 DKtvK~wk~~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL  203 (433)
T KOG0268|consen  128 DKTVKQWKIDGP-PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL  203 (433)
T ss_pred             CcceeeeeccCC-cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence            999999997663 4455443 345667777777888999885  589999988888888887778899999999766 56


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC-cEEEEEeccCCceeEEEeE
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG-KILKTYTGHTNSKYCISST  251 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~  251 (321)
                      ++|+.|+.|.+||++.+.+++.+....  ..+.++|+|.+-.++++.+|..++.||++.. .++..+.+|...+..+  .
T Consensus       204 as~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dV--d  279 (433)
T KOG0268|consen  204 ASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDV--D  279 (433)
T ss_pred             eeeccCCceEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEe--c
Confidence            677799999999999988877664433  3467899997777888999999999999865 3566677776654333  3


Q ss_pred             EEecCCeEEEEeCCCCeEEEEEcccceEEEEecC-CCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG-HTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      | .|.|+-+++|+.|.+||||.++.+.....+.. -.+.|.++.|+-|.+++++||  +|+.|++|...
T Consensus       280 f-sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGS--dd~nvRlWka~  345 (433)
T KOG0268|consen  280 F-SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGS--DDGNVRLWKAK  345 (433)
T ss_pred             c-CCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecC--CCcceeeeecc
Confidence            3 47899999999999999999976643222211 135799999999999999998  45889999864

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.2e-29  Score=219.10  Aligned_cols=226  Identities=19%  Similarity=0.323  Sum_probs=178.5

Q ss_pred             EeCCCcEEEEecCCcceeeeeecCcccEEEEEECCC-CCEEEEeeCCCcEEEEecCCCE--------EEEEEeCCCCCee
Q 020798           91 ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGK--------CLKVLPAHSDPVT  161 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~--------~~~~~~~~~~~v~  161 (321)
                      |+.++.+++|+......+..+.+|...|.+++|+|+ +++|++|+.|+.|++||+.++.        +...+..|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            567889999998877778888999999999999997 7899999999999999997542        2345678999999


Q ss_pred             EEEEccCCCE-EEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec
Q 020798          162 AVDFNRDGTM-IVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG  240 (321)
Q Consensus       162 ~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~  240 (321)
                      +++|+|++.. +++++.|++|++||+++++....+.  +...+.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI  207 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            9999998875 5688999999999999887665543  345689999999999999999999999999999999999988


Q ss_pred             cCCceeEEEeE--EEecCCeEEEEeCCC----CeEEEEEccc-ceEEEEe--cCCCCCeEEEEecCCCceEEEEeecCCc
Q 020798          241 HTNSKYCISST--FSVTNGKYIVSGSED----SCVYLWELQS-RKVVQKL--EGHTDPVISVASHPTENIIASGALDNDR  311 (321)
Q Consensus       241 ~~~~~~~~~~~--~~~~~~~~l~~~~~d----g~i~vwd~~~-~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~d~~~  311 (321)
                      |.+........  ...+++.+|++++.|    +.|+|||++. .+.+..+  ..+.+.+......+++.++++|+  +|+
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk--GD~  285 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK--GDG  285 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE--CCC
Confidence            87654322211  123567788877666    4799999985 4455443  33444455555566688999987  568


Q ss_pred             cEEEccccc
Q 020798          312 TVKIWTQEK  320 (321)
Q Consensus       312 ~i~iw~~~~  320 (321)
                      .|++|+...
T Consensus       286 tIr~~e~~~  294 (568)
T PTZ00420        286 NCRYYQHSL  294 (568)
T ss_pred             eEEEEEccC
Confidence            999999753

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-30  Score=216.46  Aligned_cols=241  Identities=26%  Similarity=0.412  Sum_probs=208.1

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccccc-ccccEEEEEECCCCCEEEEEeCCCcEEEE
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTG-HEQGVSDLVFSSDSRFLVSASDDKTIRLW  100 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~l~~~~~d~~i~iw  100 (321)
                      +...|+++.|+++|++||+|..+|.+.+||.....        .+..+.+ |...|-+++|.  +..+.+|+.|+.|..+
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--------~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~  285 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--------KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNH  285 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--------ccccccCCcCceeEEEecc--CceEEEecCCCcEEEE
Confidence            47899999999999999999999999999976533        2344555 89999999998  5678999999999999


Q ss_pred             ecCCcceeee-eecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC-CCEEEEEe--
Q 020798          101 DVPTATCLKT-LIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD-GTMIVTSS--  176 (321)
Q Consensus       101 d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~--  176 (321)
                      |++..+.... +.+|...|..+.|++|++++++|+.|+.+.+||....++...+..|..+|.+++|+|- ..+||+|+  
T Consensus       286 dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs  365 (484)
T KOG0305|consen  286 DVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS  365 (484)
T ss_pred             EEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence            9988765544 7889999999999999999999999999999999888888899999999999999995 45777764  


Q ss_pred             CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE--ecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEe
Q 020798          177 YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG--TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV  254 (321)
Q Consensus       177 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (321)
                      .|+.|++||..++..+..+.  ....|..+.|++..+.|+++  ..++.|.||+..+.+.+..+.+|...+..+   ...
T Consensus       366 ~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~l---a~S  440 (484)
T KOG0305|consen  366 ADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYL---ALS  440 (484)
T ss_pred             cccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEE---EEC
Confidence            69999999999998777663  45679999999998877764  467799999999999999999998875443   345


Q ss_pred             cCCeEEEEeCCCCeEEEEEcccc
Q 020798          255 TNGKYIVSGSEDSCVYLWELQSR  277 (321)
Q Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~  277 (321)
                      |||..+++|+.|.++++|++...
T Consensus       441 Pdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  441 PDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCCEEEEecccCcEEeccccCC
Confidence            89999999999999999998764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-29  Score=192.96  Aligned_cols=248  Identities=22%  Similarity=0.391  Sum_probs=203.0

Q ss_pred             ccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC--CCcEEEEecC
Q 020798           68 KFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF--DETVRIWDVK  145 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~  145 (321)
                      .+..-...|.++.|+++|.++++++.|.++++||..+++.++.+..+.-.+..++|....+.++.++.  |.+|+..++.
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            34445678999999999999999999999999999999999988877777888888777677666665  8899999999


Q ss_pred             CCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 020798          146 TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLR  225 (321)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~  225 (321)
                      +.+.++.+++|...|.+++.+|-++.+++++.|++|++||++..++...+.... .  ..++|+|.|-++|++...+.|+
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~--pi~AfDp~GLifA~~~~~~~Ik  165 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-R--PIAAFDPEGLIFALANGSELIK  165 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-C--cceeECCCCcEEEEecCCCeEE
Confidence            999999999999999999999999999999999999999999777655543222 2  3478999999999988888999


Q ss_pred             EEeCCCC--cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCe---EEEEecCCCc
Q 020798          226 LWNYSTG--KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV---ISVASHPTEN  300 (321)
Q Consensus       226 i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v---~~~~~~p~~~  300 (321)
                      +||++.-  .+-..+.-.........-.-+.++|++|+.++..+.+++.|.-.|.++..+.++.+.-   .+.+|.||++
T Consensus       166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~  245 (311)
T KOG1446|consen  166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK  245 (311)
T ss_pred             EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence            9999753  2333333222222223334445899999999999999999999999988888876543   6889999999


Q ss_pred             eEEEEeecCCccEEEccccc
Q 020798          301 IIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       301 ~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ++.+|+  +||+|.+|+.+.
T Consensus       246 Fvl~gs--~dg~i~vw~~~t  263 (311)
T KOG1446|consen  246 FVLSGS--DDGTIHVWNLET  263 (311)
T ss_pred             EEEEec--CCCcEEEEEcCC
Confidence            999997  569999999864

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-31  Score=220.40  Aligned_cols=289  Identities=24%  Similarity=0.492  Sum_probs=233.0

Q ss_pred             CcccEE---EEEEC-CCCCEEEEecCCceEEEeeccccCCCCCCCCC-cccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           22 HLRAIS---SVKFS-HDGRLLASSSADKTLLTYSLSSISNSDSTPPS-PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        22 h~~~v~---~~~~s-~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      |...|.   .+..+ |.++||.+||.||.|++|+......   .+.. .+..++.|.+-|+++....+++.|++++.|.+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~---~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT   96 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN---EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTT   96 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccC---CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCce
Confidence            444555   45555 5778899999999999998765322   1122 36678889999999999999999999999999


Q ss_pred             EEEEecCCc--ceeeeeecCcccEEEEEE-CCCCCEEEEeeCCCcEEEEecCCCEE--E--------EEEe-CCCCCeeE
Q 020798           97 IRLWDVPTA--TCLKTLIGHTNYVFCVNF-NPQSNMIVSGAFDETVRIWDVKTGKC--L--------KVLP-AHSDPVTA  162 (321)
Q Consensus        97 i~iwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~--~--------~~~~-~~~~~v~~  162 (321)
                      |++|+....  -+...+..|..+|.|+++ .++...+++||.|+.|.+||+.++..  +        ..+. ++..+|.+
T Consensus        97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS  176 (735)
T KOG0308|consen   97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS  176 (735)
T ss_pred             EEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence            999998776  567788899999999999 77888899999999999999987732  1        1222 67788999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccC
Q 020798          163 VDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT  242 (321)
Q Consensus       163 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  242 (321)
                      ++.++.+..+++|+-.+.+++||.++.+.+..+. +|...|..+..++||..++++++||+|++||+...+.+.++..|.
T Consensus       177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~  255 (735)
T KOG0308|consen  177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK  255 (735)
T ss_pred             eecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence            9999999999999999999999999988777765 677789999999999999999999999999999999999999998


Q ss_pred             CceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          243 NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ..++.+.   ..++-..+.+|+.||.|..=|+++......+.....+|..+..+.+.+-+=++.  .|+.|+-|..+
T Consensus       256 e~VWaL~---~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtT--tds~I~rW~~~  327 (735)
T KOG0308|consen  256 EGVWALQ---SSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTT--TDSSIKRWKLE  327 (735)
T ss_pred             CceEEEe---eCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeee--ccccceecCCc
Confidence            8766543   347788999999999999999988644334444556777777764433322223  34678888765

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.3e-30  Score=202.19  Aligned_cols=253  Identities=28%  Similarity=0.472  Sum_probs=205.9

Q ss_pred             ceeeeeccCCcccEEEEEECCC---CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE
Q 020798           13 YTLTQTLNGHLRAISSVKFSHD---GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV   89 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~---g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~   89 (321)
                      .....++.||.++|.+++|--.   ...|++++.|.++++|........    ...+....||++.|-+++..++|..++
T Consensus       134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~----~~~~~~~~GHk~~V~sVsv~~sgtr~~  209 (423)
T KOG0313|consen  134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK----VKALKVCRGHKRSVDSVSVDSSGTRFC  209 (423)
T ss_pred             CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh----hhHHhHhcccccceeEEEecCCCCeEE
Confidence            3456778899999998888532   336999999999999977543322    223344569999999999999999999


Q ss_pred             EEeCCCcEEEEecCC-------------------------cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           90 SASDDKTIRLWDVPT-------------------------ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        90 ~~~~d~~i~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      +|+.|..|++|+.+.                         ..++..+.+|.+.|.++.|++ ...++++++|.+|+.||+
T Consensus       210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDl  288 (423)
T KOG0313|consen  210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDL  288 (423)
T ss_pred             eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEe
Confidence            999999999999321                         123446789999999999998 678999999999999999


Q ss_pred             CCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCC--ceeeeeccCCCCCeEEEEEccCCCE-EEEEecC
Q 020798          145 KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG--HCMKTLIDDENPPVSFVKFSPNGKF-ILVGTLD  221 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~~~d  221 (321)
                      .++.+...+.. .....+++++|..+++++|+.|..+++||.+++  ..+...+..|..-|..+.|+|...+ |++++.|
T Consensus       289 etg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D  367 (423)
T KOG0313|consen  289 ETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD  367 (423)
T ss_pred             ecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence            99998877764 567899999999999999999999999999865  4455555677778999999996654 6778899


Q ss_pred             CeEEEEeCCCCc-EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          222 NTLRLWNYSTGK-ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       222 ~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      +++++||+++.+ ++..+.+|...+.++.  |  .++..+++|+.|.+|+++.-.
T Consensus       368 ~t~klWDvRS~k~plydI~~h~DKvl~vd--W--~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  368 NTVKLWDVRSTKAPLYDIAGHNDKVLSVD--W--NEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CeEEEEEeccCCCcceeeccCCceEEEEe--c--cCCceEEeccCcceEEEeccc
Confidence            999999999887 8888988876654443  3  368899999999999998753

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=9.5e-31  Score=219.64  Aligned_cols=281  Identities=18%  Similarity=0.333  Sum_probs=221.3

Q ss_pred             EEEEecCCceEEEeeccccCCCCC---C--------------CCC------------cccccccccccEEEEEECCCCCE
Q 020798           37 LLASSSADKTLLTYSLSSISNSDS---T--------------PPS------------PLQKFTGHEQGVSDLVFSSDSRF   87 (321)
Q Consensus        37 ~l~~~~~d~~v~~~~~~~~~~~~~---~--------------~~~------------~~~~~~~h~~~i~~~~~~~~~~~   87 (321)
                      -+.||+.|++|++|++........   .              +..            .....-....++++++.+|+|++
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            488999999999999876211000   0              000            00011123457999999999999


Q ss_pred             EEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCC---CCEEEEeeCCCcEEEEecCC-CEEEEEEeCCCCCeeEE
Q 020798           88 LVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ---SNMIVSGAFDETVRIWDVKT-GKCLKVLPAHSDPVTAV  163 (321)
Q Consensus        88 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~  163 (321)
                      ||+|..-|++++|++...+....+.+|...|.|+.++..   .+.|++++.|..|++||... ..+++++..|...|+++
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv  553 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV  553 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence            999999999999999988888888999999999999853   46789999999999999854 35677889999999999


Q ss_pred             EEccCC--CEEEEEeCCCeEEEEeCCC---Ccee-eeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEE
Q 020798          164 DFNRDG--TMIVTSSYDGLCRIWDAST---GHCM-KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT  237 (321)
Q Consensus       164 ~~~~~~--~~l~~~~~dg~i~~~d~~~---~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~  237 (321)
                      .|...|  ..+++++.|..|.+--.+.   +... +.........+..++..|..+++++++.|..|+|||+.+++..+.
T Consensus       554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~  633 (1080)
T KOG1408|consen  554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS  633 (1080)
T ss_pred             EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence            998876  6789999998875432221   1111 111111223577899999999999999999999999999999999


Q ss_pred             EeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          238 YTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      |++.....-.+.-....|.|-|+|+.++|.++.++|+.+++++.++.||...|+.+.|.+|.++|++.+  +||.|.+|.
T Consensus       634 FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs--gDgCIFvW~  711 (1080)
T KOG1408|consen  634 FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS--GDGCIFVWK  711 (1080)
T ss_pred             ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec--CCceEEEEE
Confidence            987554422233334457899999999999999999999999999999999999999999999999998  668999998


Q ss_pred             cc
Q 020798          318 QE  319 (321)
Q Consensus       318 ~~  319 (321)
                      +-
T Consensus       712 lp  713 (1080)
T KOG1408|consen  712 LP  713 (1080)
T ss_pred             Cc
Confidence            63

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.98  E-value=3.1e-29  Score=191.01  Aligned_cols=270  Identities=20%  Similarity=0.298  Sum_probs=214.1

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      ...|+++.|+|.++.|++++.||.+++|+....         .+...-.|..++.+++|.++ ..+++|+.||.|+.+|+
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---------~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---------SLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDL   82 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccch---------hhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEe
Confidence            568999999999999999999999999987542         12223358899999999874 56889999999999999


Q ss_pred             CCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q 020798          103 PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR  182 (321)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  182 (321)
                      .++.. ..+..|...+.|+.+++..+.+++|++|++|++||.+.......+.. ...|.++..  .++.|++|+.+..+.
T Consensus        83 n~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~  158 (323)
T KOG1036|consen   83 NTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVL  158 (323)
T ss_pred             cCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEE
Confidence            98874 45667999999999999889999999999999999987554444433 346776665  477899999999999


Q ss_pred             EEeCCCCceeee-eccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC----cEEEEEeccC------CceeEEEeE
Q 020798          183 IWDASTGHCMKT-LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG----KILKTYTGHT------NSKYCISST  251 (321)
Q Consensus       183 ~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~------~~~~~~~~~  251 (321)
                      +||+++...... ........+.++++-|++.-+++++-||.+.+=.+...    +....|+.|.      .-.+++...
T Consensus       159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai  238 (323)
T KOG1036|consen  159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI  238 (323)
T ss_pred             EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence            999997543322 12233456889999998888999999999877665544    3334455553      224556655


Q ss_pred             EEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      .+.|-...||||+.||.|.+||+.+.+.+..+......|-+++|+-+|..||.|+
T Consensus       239 ~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  239 AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             EeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            5556667899999999999999999998888887778899999999999999986

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=7.5e-30  Score=195.33  Aligned_cols=291  Identities=20%  Similarity=0.324  Sum_probs=209.9

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE-EeCCC
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS-ASDDK   95 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~-~~~d~   95 (321)
                      ..|+||.+.|++++|+.||++||+++.|+.|++|++.+....+-...  .+.++  -+-.+.+.|+||-+-++. .-...
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~--R~nve--~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCI--RQNVE--YDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHh--hcccc--CCCceEEEECCCcceEEEEEccCC
Confidence            45799999999999999999999999999999999987543222111  11111  123577899999775554 44555


Q ss_pred             cEEEEecCCcce---e---------eeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEE
Q 020798           96 TIRLWDVPTATC---L---------KTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAV  163 (321)
Q Consensus        96 ~i~iwd~~~~~~---~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  163 (321)
                      ++++|.+...+.   .         ..-..|.-.+..+-....+.+|++++.|..|.+|+++ |+.+..+......-+..
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence            799998743321   0         1112355566677777778899999999999999998 88887777666666788


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCC---CCc--eeee--eccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCC-----
Q 020798          164 DFNRDGTMIVTSSYDGLCRIWDAS---TGH--CMKT--LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST-----  231 (321)
Q Consensus       164 ~~~~~~~~l~~~~~dg~i~~~d~~---~~~--~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~-----  231 (321)
                      +.+|+|+++++++-.-.+++|.+-   .|.  .+.+  .+..|...+..++|+++...+++.+.||++++||+.-     
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~  314 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG  314 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence            999999999999998899999862   221  1111  1346778899999999999999999999999999742     


Q ss_pred             --CcEEEEEe--ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec-CCCCCeEEEEecCCCceEEEEe
Q 020798          232 --GKILKTYT--GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE-GHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       232 --~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                        .+.++...  .+......+. +...|+|+.||... ...+++|..+.++....++ .|...|.+++|+|+|+++|+++
T Consensus       315 qDpk~Lk~g~~pl~aag~~p~R-L~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  315 QDPKILKEGSAPLHAAGSEPVR-LELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             CCchHhhcCCcchhhcCCCceE-EEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence              22333221  1111111122 22347888877643 4579999999887765554 4899999999999999999996


Q ss_pred             ecCCccEEEcc
Q 020798          307 LDNDRTVKIWT  317 (321)
Q Consensus       307 ~d~~~~i~iw~  317 (321)
                         |+.+++..
T Consensus       393 ---dr~vrv~~  400 (420)
T KOG2096|consen  393 ---DRYVRVIR  400 (420)
T ss_pred             ---ceeeeeec
Confidence               56777654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=1.6e-29  Score=200.73  Aligned_cols=251  Identities=25%  Similarity=0.410  Sum_probs=210.7

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      .++...|+||...|+.+.|+|+...+++++.|..|++|....        .........|..+|+.+..+|+|.||++++
T Consensus       251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~--------~s~~~~~~~h~~~V~~ls~h~tgeYllsAs  322 (506)
T KOG0289|consen  251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL--------SSEPTSSRPHEEPVTGLSLHPTGEYLLSAS  322 (506)
T ss_pred             hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc--------ccCccccccccccceeeeeccCCcEEEEec
Confidence            456678999999999999999999999999999999997542        122344567999999999999999999999


Q ss_pred             CCCcEEEEecCCcceeeeeecC--cccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC
Q 020798           93 DDKTIRLWDVPTATCLKTLIGH--TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT  170 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (321)
                      .|+.....|++++.++......  .-.+++.+|+|||..|.+|..||.+++||+.++.....|++|.++|..++|+.+|-
T Consensus       323 ~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY  402 (506)
T KOG0289|consen  323 NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY  402 (506)
T ss_pred             CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCce
Confidence            9999999999999876655432  23478999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC--CCcEEEEEeccCCceeEE
Q 020798          171 MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS--TGKILKTYTGHTNSKYCI  248 (321)
Q Consensus       171 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~  248 (321)
                      +|+++..|+.|++||+|.-+..+.+.......+..+.|++.|.+|+.++.|=+|++++-.  ....+..+..|.+...++
T Consensus       403 ~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v  482 (506)
T KOG0289|consen  403 WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV  482 (506)
T ss_pred             EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccccee
Confidence            999999999999999998887777766666678999999999999999877777777643  344566666665443333


Q ss_pred             EeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          249 SSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                         .+....+++++++-|..++++.+
T Consensus       483 ---~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  483 ---RFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ---eecccceEEeeccchhheEEeec
Confidence               33456889999999999888764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.6e-29  Score=217.62  Aligned_cols=260  Identities=31%  Similarity=0.582  Sum_probs=215.0

Q ss_pred             cccccCCcce---eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEE
Q 020798            5 QSLESFRPYT---LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVF   81 (321)
Q Consensus         5 ~~~~~~~~~~---~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~   81 (321)
                      +.|..++..+   +...+.||.+.|.+++|...+.+|++|+.|.++++||+..        ......+.+|...|.++..
T Consensus       228 ~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s--------g~C~~~l~gh~stv~~~~~  299 (537)
T KOG0274|consen  228 STLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST--------GECTHSLQGHTSSVRCLTI  299 (537)
T ss_pred             ceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--------CcEEEEecCCCceEEEEEc
Confidence            4444444333   3344899999999999998889999999999999998653        3467788899999999887


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCee
Q 020798           82 SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVT  161 (321)
Q Consensus        82 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~  161 (321)
                      .+  ..+++|+.|.+|++|++.++.++..+.+|.+.|.++..+  +..+++|+.|++|++||+.+++++..+.+|...|.
T Consensus       300 ~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~  375 (537)
T KOG0274|consen  300 DP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY  375 (537)
T ss_pred             cC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence            54  467888999999999999999999999999999999998  78999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeCCCC-ceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec
Q 020798          162 AVDFNRDGTMIVTSSYDGLCRIWDASTG-HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG  240 (321)
Q Consensus       162 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~  240 (321)
                      ++.+.+. ..+++|+.|++|++||+++. +++..+. .+...+..  +...++.|++++.|+.|++||..+++.++.+.+
T Consensus       376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             EEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-CCcccccc--cccccceeEeccccccEEEeecccCceeeeecc
Confidence            9988665 78999999999999999998 7776653 33333433  344678999999999999999999999999987


Q ss_pred             -cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC
Q 020798          241 -HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG  285 (321)
Q Consensus       241 -~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  285 (321)
                       +...+..+.   .  ....+++++.||.+++||+++++.+..+-.
T Consensus       452 ~~~~~v~~l~---~--~~~~il~s~~~~~~~l~dl~~~~~~~~l~~  492 (537)
T KOG0274|consen  452 RHVGGVSALA---L--GKEEILCSSDDGSVKLWDLRSGTLIRTLLS  492 (537)
T ss_pred             CCcccEEEee---c--CcceEEEEecCCeeEEEecccCchhhhhhh
Confidence             444433322   1  146788899999999999999988776533

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-29  Score=204.40  Aligned_cols=241  Identities=26%  Similarity=0.483  Sum_probs=199.7

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC-CEEEEEeCCCcE
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS-RFLVSASDDKTI   97 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d~~i   97 (321)
                      +.--.+.|+++.|-.||++||.|...|.|++||...        ...++.+.+|+.++..+.|+|.+ ..|++|++|+.+
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~  135 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVV  135 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceE
Confidence            334567899999999999999999999999998532        23567889999999999999965 567788899999


Q ss_pred             EEEecCCcceeeeeecCcccEEEEEECCCCC-EEEEeeCCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEccCCCEEEEE
Q 020798           98 RLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      ++||+.+...+..+.+|+++|.|.+++|... .+++|+.||.|++||++.. ..+..+ .|..+|.++.+-|.|..++++
T Consensus       136 k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasA  214 (487)
T KOG0310|consen  136 KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASA  214 (487)
T ss_pred             EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEc
Confidence            9999999987778899999999999999754 7899999999999999887 344444 689999999999999988887


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEec
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVT  255 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (321)
                      +. ..+++||+.+|.........|...|+++.+..++..|++++-|+.+++||+.+-+.+..+.-. +++..   +...+
T Consensus       215 gG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-~pvLs---iavs~  289 (487)
T KOG0310|consen  215 GG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP-GPVLS---IAVSP  289 (487)
T ss_pred             CC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc-cceee---EEecC
Confidence            76 469999998665444444457888999999999999999999999999999888888887532 33322   33346


Q ss_pred             CCeEEEEeCCCCeEEEEE
Q 020798          256 NGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       256 ~~~~l~~~~~dg~i~vwd  273 (321)
                      +++.++.|-+||.+.+=+
T Consensus       290 dd~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  290 DDQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             CCceEEEecccceeeeeh
Confidence            888999999999887653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5.6e-29  Score=186.08  Aligned_cols=233  Identities=24%  Similarity=0.482  Sum_probs=199.8

Q ss_pred             ccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC
Q 020798           68 KFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG  147 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  147 (321)
                      .+.+|+++++.+.|+.+|.+|++++.|....+|--.+++.+-++.+|.+.|+|++.+.+.+.+++|+.|.++++||+.+|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            36789999999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCeeEEEEccCCCEEEEEe-----CCCeEEEEeCCC-------CceeeeeccCCCCCeEEEEEccCCCEE
Q 020798          148 KCLKVLPAHSDPVTAVDFNRDGTMIVTSS-----YDGLCRIWDAST-------GHCMKTLIDDENPPVSFVKFSPNGKFI  215 (321)
Q Consensus       148 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~l  215 (321)
                      +++..++. ..+|..+.|+++|++++.+.     ..+.|.++|++.       .++...+... ...++.+.|.|-+++|
T Consensus        85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWGPLGETI  162 (327)
T ss_pred             cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeecccCCEE
Confidence            99988874 67899999999999877664     456899999973       3334444333 3567889999999999


Q ss_pred             EEEecCCeEEEEeCCCCc-EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEE
Q 020798          216 LVGTLDNTLRLWNYSTGK-ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVA  294 (321)
Q Consensus       216 ~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  294 (321)
                      ++|..||.|.+||+++++ .+.+...|...   +.-....++..++++++.|.+-++||+.+.++++++.. ..||++.+
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~---Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa  238 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSK---INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA  238 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccc---cccccccCCcceEEecccCccceeeeccceeeEEEeee-ccccccee
Confidence            999999999999999985 45555556553   33344457899999999999999999999999988875 56999999


Q ss_pred             ecCCCceEEEEe
Q 020798          295 SHPTENIIASGA  306 (321)
Q Consensus       295 ~~p~~~~l~s~~  306 (321)
                      ++|..+.++.|+
T Consensus       239 isP~~d~VilgG  250 (327)
T KOG0643|consen  239 ISPLLDHVILGG  250 (327)
T ss_pred             cccccceEEecC
Confidence            999999888876

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.5e-30  Score=199.92  Aligned_cols=244  Identities=26%  Similarity=0.471  Sum_probs=204.1

Q ss_pred             cccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeee--------eecCcccEEEEEECCCCCEEEEeeCCCcEEEE
Q 020798           71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKT--------LIGHTNYVFCVNFNPQSNMIVSGAFDETVRIW  142 (321)
Q Consensus        71 ~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w  142 (321)
                      +.+..+.|..|+|||++|++|+.||-|.+||.-+++..+.        +.-+..+|.|+.|+.|...+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            3455678899999999999999999999999988865432        33467889999999999999999999999999


Q ss_pred             ecCCCEEEEEEe-CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC
Q 020798          143 DVKTGKCLKVLP-AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD  221 (321)
Q Consensus       143 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d  221 (321)
                      .+++|.++..+. .|...|+++.|+.|+..+++++.|.++++.-+.+|++++.+. .+...++.+.|.++|..+++++.|
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCCCeEEEecCC
Confidence            999999998886 899999999999999999999999999999999999888764 556778999999999999999999


Q ss_pred             CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC---CCCCeEEEEecCC
Q 020798          222 NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG---HTDPVISVASHPT  298 (321)
Q Consensus       222 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~p~  298 (321)
                      |++++|+.++.+.+.++..........+....+.+...++.+....+|++.+++ ++.+..+..   ..+.-.+.+.+|.
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpk  448 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPK  448 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCC
Confidence            999999999999888886544333333344456677888999999999999986 555555532   3355677788999


Q ss_pred             CceEEEEeecCCccEEEccc
Q 020798          299 ENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       299 ~~~l~s~~~d~~~~i~iw~~  318 (321)
                      |.++-+.++  |+.++.+..
T Consensus       449 GewiYcigE--D~vlYCF~~  466 (508)
T KOG0275|consen  449 GEWIYCIGE--DGVLYCFSV  466 (508)
T ss_pred             CcEEEEEcc--CcEEEEEEe
Confidence            999998874  577777654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=4.7e-29  Score=189.50  Aligned_cols=240  Identities=22%  Similarity=0.345  Sum_probs=182.3

Q ss_pred             ccccEEEEEECC-CCCEEEEEeCCCcEEEEecCCc-ce-eeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE
Q 020798           72 HEQGVSDLVFSS-DSRFLVSASDDKTIRLWDVPTA-TC-LKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK  148 (321)
Q Consensus        72 h~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  148 (321)
                      .++.|.+|+||| ...++++++.|++||+|++... .. -+....|.+++.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            357899999999 4556669999999999999763 32 24556789999999999999999999999999999999995


Q ss_pred             EEEEEeCCCCCeeEEEEccCCC--EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 020798          149 CLKVLPAHSDPVTAVDFNRDGT--MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL  226 (321)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i  226 (321)
                       ...+..|..+|..+.|-+...  .|++|+.|.++++||.+....+.++....  .+.  +.+--..+++++..++.|.+
T Consensus       106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--RvY--a~Dv~~pm~vVata~r~i~v  180 (347)
T KOG0647|consen  106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--RVY--AADVLYPMAVVATAERHIAV  180 (347)
T ss_pred             -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--eee--ehhccCceeEEEecCCcEEE
Confidence             556778999999999987665  89999999999999999887776653322  222  33334557888999999999


Q ss_pred             EeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc--eEEEEecCCC---------CCeEEEEe
Q 020798          227 WNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR--KVVQKLEGHT---------DPVISVAS  295 (321)
Q Consensus       227 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~---------~~v~~~~~  295 (321)
                      |+++++......... ...+.+.+.....+.+..|.|+-+|.+.+..+..+  +.-..++.|.         .+|++++|
T Consensus       181 ynL~n~~te~k~~~S-pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F  259 (347)
T KOG0647|consen  181 YNLENPPTEFKRIES-PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF  259 (347)
T ss_pred             EEcCCCcchhhhhcC-cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence            999776433221111 11222222333345666688999999999998775  3333445554         26889999


Q ss_pred             cCCCceEEEEeecCCccEEEcccc
Q 020798          296 HPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       296 ~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +|....|+|+|  +||++.+||.+
T Consensus       260 hP~hgtlvTaG--sDGtf~FWDkd  281 (347)
T KOG0647|consen  260 HPVHGTLVTAG--SDGTFSFWDKD  281 (347)
T ss_pred             ecccceEEEec--CCceEEEecch
Confidence            99999999998  56999999975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=1.5e-29  Score=204.48  Aligned_cols=282  Identities=19%  Similarity=0.378  Sum_probs=224.1

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccc--ccccccEEEEEECCCCCEEEEEeCCCcEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF--TGHEQGVSDLVFSSDSRFLVSASDDKTIR   98 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~~~~~~~~~~l~~~~~d~~i~   98 (321)
                      .|.+-|-++++|...+.+.||+ .|.|++||+.....     ..|+..+  ..-...|+++...|||+.|++|+.-.++.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~-----k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls  490 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGN-----KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS  490 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCC-----CCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence            5777888899999999999987 68899999976421     1222222  23457899999999999999999999999


Q ss_pred             EEecCCccee--eeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEe
Q 020798           99 LWDVPTATCL--KTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS  176 (321)
Q Consensus        99 iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  176 (321)
                      |||+...+..  ..+.........++.+||.+..++|..||.|.|||+.+...+..+++|.+.+.++.++++|..|-+|+
T Consensus       491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG  570 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG  570 (705)
T ss_pred             eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC
Confidence            9999766432  22333334567889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecC
Q 020798          177 YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       177 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (321)
                      -|+++|.||++.++.+...  .....|.++..+|++.++++|-.++.+.|......+ ...+..|..   |+...-+..-
T Consensus       571 lDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheS---cVLSlKFa~c  644 (705)
T KOG0639|consen  571 LDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHES---CVLSLKFAYC  644 (705)
T ss_pred             Cccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeeccccc---EEEEEEeccc
Confidence            9999999999988655443  334568889999999999999999999998865443 222333332   3333334456


Q ss_pred             CeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          257 GKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      |+++++.+.|..+..|...-+..+...+. .++|+++.++-|.++++|||-|  ....+|.
T Consensus       645 GkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGd--kkATVYe  702 (705)
T KOG0639|consen  645 GKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGD--KKATVYE  702 (705)
T ss_pred             CceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCC--cceEEEE
Confidence            99999999999999999988887776654 6789999999999999999955  4444443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.8e-28  Score=187.56  Aligned_cols=292  Identities=26%  Similarity=0.447  Sum_probs=215.8

Q ss_pred             cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      |..+..+|.- .. -.|+.|++-|.+||+|..||.+.|||+.+.        .+-+.+.+|..+|.+++||++|+.|+++
T Consensus        14 PEel~~tld~-~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--------~iar~lsaH~~pi~sl~WS~dgr~Llts   83 (405)
T KOG1273|consen   14 PEELTHTLDN-PL-AECCQFSRWGDYLAVGCANGRVVIYDFDTF--------RIARMLSAHVRPITSLCWSRDGRKLLTS   83 (405)
T ss_pred             hHhhceeccC-Cc-cceEEeccCcceeeeeccCCcEEEEEcccc--------chhhhhhccccceeEEEecCCCCEeeee
Confidence            3444555532 22 778999999999999999999999998653        2456788999999999999999999999


Q ss_pred             eCCCcEEEEecCCcceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEEEeCCC-----CCeeEEEE
Q 020798           92 SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPAHS-----DPVTAVDF  165 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----~~v~~~~~  165 (321)
                      +.|..|.+||+..+.+++.+. ..++|+.+.|+|.. +.++++-.+..-.+.++..+. ...++...     .......|
T Consensus        84 S~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~f  161 (405)
T KOG1273|consen   84 SRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVF  161 (405)
T ss_pred             cCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccc
Confidence            999999999999999887765 57789999999964 344444344444555555432 11222111     11223358


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC-------cEE--E
Q 020798          166 NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG-------KIL--K  236 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~-------~~~--~  236 (321)
                      .+.|+++++|...|.+.++|..+.+++..+.......|..+.++..|+.|+.-+.|..|+.|+++.-       ++.  +
T Consensus       162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~  241 (405)
T KOG1273|consen  162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH  241 (405)
T ss_pred             cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence            8999999999999999999999988877665444456888999999999999999999999997631       111  1


Q ss_pred             EEeccCCceeEEEeEEEecCCeEEEEeCC-CCeEEEEEcccceEEEEecCCC-CCeEEEEecCCCceEEEEeecCCccEE
Q 020798          237 TYTGHTNSKYCISSTFSVTNGKYIVSGSE-DSCVYLWELQSRKVVQKLEGHT-DPVISVASHPTENIIASGALDNDRTVK  314 (321)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~~~d~~~~i~  314 (321)
                      .++.-.+...--.++|+ .+|.++++|+. ...++||+-..|.+++.+.|.. ....++.|+|....+++-.   .|.|+
T Consensus       242 K~qDvVNk~~Wk~ccfs-~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~---sg~v~  317 (405)
T KOG1273|consen  242 KLQDVVNKLQWKKCCFS-GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA---SGVVY  317 (405)
T ss_pred             HHHHHHhhhhhhheeec-CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc---CCceE
Confidence            11110011000122343 58999888764 3469999999999999999877 6789999999999988863   47899


Q ss_pred             Ecccc
Q 020798          315 IWTQE  319 (321)
Q Consensus       315 iw~~~  319 (321)
                      ||...
T Consensus       318 iw~~~  322 (405)
T KOG1273|consen  318 IWAVV  322 (405)
T ss_pred             EEEee
Confidence            99874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.1e-28  Score=197.10  Aligned_cols=254  Identities=23%  Similarity=0.363  Sum_probs=201.5

Q ss_pred             cCCcccEEEEEECCCC-CEEEEecCCceEEEeeccccCCCCCC--CCCcccccccccccEEEEEECCCCC-EEEEEeCCC
Q 020798           20 NGHLRAISSVKFSHDG-RLLASSSADKTLLTYSLSSISNSDST--PPSPLQKFTGHEQGVSDLVFSSDSR-FLVSASDDK   95 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g-~~l~~~~~d~~v~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~~~~~~~~~-~l~~~~~d~   95 (321)
                      .-|.+.|..+++.|+. .++|+.+..+.+.|||..+.......  ...|...+.+|++.-+.++|++... .|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            3599999999999976 47788899999999998875543322  3456678899999778899998643 788999999


Q ss_pred             cEEEEecCCcc-------eeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecC--CCEEEEEEeCCCCCeeEEEE
Q 020798           96 TIRLWDVPTAT-------CLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK--TGKCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus        96 ~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~~~  165 (321)
                      .|.+||+....       ....+.+|...|..++|++-. ..|++++.|+.+.+||++  +.++....+.|..++.+++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            99999986432       234567999999999999854 568899999999999999  55666677899999999999


Q ss_pred             ccCC-CEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCC-CEEEEEecCCeEEEEeCCCC-----------
Q 020798          166 NRDG-TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNG-KFILVGTLDNTLRLWNYSTG-----------  232 (321)
Q Consensus       166 ~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~d~~i~i~d~~~~-----------  232 (321)
                      +|-+ ..|++|+.|++|.+||+|+-......+..+...|..+.|+|.. ..|++++.|+.+.+||+..-           
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d  360 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED  360 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence            9965 4678899999999999997654444456677889999999964 56778889999999998642           


Q ss_pred             ---cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          233 ---KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       233 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                         +++....+|...+  ..+.+.+.....+++.+.|+.+.||++.
T Consensus       361 gppEllF~HgGH~~kV--~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  361 GPPELLFIHGGHTAKV--SDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCcceeEEecCccccc--ccccCCCCCCeEEEEecCCceEEEeecc
Confidence               2344455665543  3345555667789999999999999986

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.6e-28  Score=215.10  Aligned_cols=261  Identities=25%  Similarity=0.392  Sum_probs=203.9

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccC----------CCCCCCCCcccccccccccEEEEEECCC
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSIS----------NSDSTPPSPLQKFTGHEQGVSDLVFSSD   84 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~----------~~~~~~~~~~~~~~~h~~~i~~~~~~~~   84 (321)
                      ....+..|.+.|+|++|+|||++||+||.|+.+.+|......          ............+.+|+..|.++.|+|+
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~  140 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD  140 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence            345567899999999999999999999999999999887410          0011122345677899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCC------C
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHS------D  158 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------~  158 (321)
                      +.+|++++.|++|.|||..+.+.++.+.+|...|..+.|.|-|++|++-+.|++|++|++.+-...+.+..+.      .
T Consensus       141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T  220 (942)
T KOG0973|consen  141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT  220 (942)
T ss_pred             ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999977655555554432      3


Q ss_pred             CeeEEEEccCCCEEEEEe----CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC-----CC------------EEEE
Q 020798          159 PVTAVDFNRDGTMIVTSS----YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN-----GK------------FILV  217 (321)
Q Consensus       159 ~v~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~------------~l~~  217 (321)
                      .+..+.|+|||.+|++..    .-.++.+.+-.+-+.-..+. .|..++.+++|+|.     .+            .+++
T Consensus       221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av  299 (942)
T KOG0973|consen  221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV  299 (942)
T ss_pred             eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence            467899999999998764    23357777655544444444 45668999999972     11            5678


Q ss_pred             EecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce
Q 020798          218 GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK  278 (321)
Q Consensus       218 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (321)
                      |+.|++|.||.....+++.....-.. ...+...| .+||..|++++.||+|.++.++..+
T Consensus       300 gSqDrSlSVW~T~~~RPl~vi~~lf~-~SI~DmsW-spdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  300 GSQDRSLSVWNTALPRPLFVIHNLFN-KSIVDMSW-SPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             ecCCccEEEEecCCCCchhhhhhhhc-CceeeeeE-cCCCCeEEEEecCCeEEEEEcchHH
Confidence            99999999999877776655432211 11233344 4789999999999999999987543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=4.7e-29  Score=196.85  Aligned_cols=247  Identities=29%  Similarity=0.478  Sum_probs=205.9

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      +.+..+|.|-.++|+++.|.++++.+++.+.|+.+++|++..        .....++.+|++.|+++.|......+++|+
T Consensus       209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--------~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs  280 (459)
T KOG0288|consen  209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS--------LRLRHTLSGHTDKVTAAKFKLSHSRVVSGS  280 (459)
T ss_pred             hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc--------hhhhhhhcccccceeeehhhccccceeecc
Confidence            446677888899999999999999999999999999998754        345678899999999999998777799999


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      .|.+|++||+.+..|.+++.. .+.+..+..+  ...++++-.|++|++||+++..+...++.+. .|+++..++++..+
T Consensus       281 ~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~l  356 (459)
T KOG0288|consen  281 ADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLEL  356 (459)
T ss_pred             ccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEE
Confidence            999999999999888776542 3345555555  4568899999999999999999999888766 89999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccC---CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEE
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDD---ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCIS  249 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  249 (321)
                      ++++.|.++.+.|+++......+...   .....+.+.|+|++.|+++|+.||.|+||++.++++...+....... .+.
T Consensus       357 LsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~-aI~  435 (459)
T KOG0288|consen  357 LSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA-AIT  435 (459)
T ss_pred             eeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc-ceE
Confidence            99999999999999987655544221   12346788999999999999999999999999999988887655442 344


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEE
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLW  272 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vw  272 (321)
                      ++.+.+.|..|++++.++.+.+|
T Consensus       436 s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  436 SLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EEEEcCCCchhhcccCCcceEec
Confidence            44445789999999999999998

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.8e-27  Score=171.63  Aligned_cols=256  Identities=25%  Similarity=0.445  Sum_probs=198.3

Q ss_pred             cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC----CCE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD----SRF   87 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~----~~~   87 (321)
                      |.-+-+.-+.|.+.|+|.+|||+|++||+|++|..|++.-.....   .....+..++.-|.+.|++++|..+    +..
T Consensus        78 p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt---~~~~g~dle~nmhdgtirdl~fld~~~s~~~i  154 (350)
T KOG0641|consen   78 PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADT---CNATGHDLEFNMHDGTIRDLAFLDDPESGGAI  154 (350)
T ss_pred             CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccc---ccccCcceeeeecCCceeeeEEecCCCcCceE
Confidence            344445557789999999999999999999999999987543221   1222344567789999999999643    346


Q ss_pred             EEEEe-CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeC--C-----CCC
Q 020798           88 LVSAS-DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPA--H-----SDP  159 (321)
Q Consensus        88 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~-----~~~  159 (321)
                      |++++ .|..|++=|...++....+.+|.+.|..+ ++-++-.+++|+.|.+|++||++-..++.++..  |     ...
T Consensus       155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa  233 (350)
T KOG0641|consen  155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA  233 (350)
T ss_pred             EEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence            66554 45567777888889899999999998876 566788999999999999999998887776532  2     357


Q ss_pred             eeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC----cEE
Q 020798          160 VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG----KIL  235 (321)
Q Consensus       160 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~----~~~  235 (321)
                      |.+++..|.|++|++|-.|..+.+||++.++.++.+. .+...|.++.|+|...++++++.|..|++=|++..    -++
T Consensus       234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~  312 (350)
T KOG0641|consen  234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPI  312 (350)
T ss_pred             eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCce
Confidence            8999999999999999999999999999998887764 56678999999999999999999999999998642    122


Q ss_pred             EEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          236 KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      -....|...  .+.+.|.+. .-.+++.+.|.++.+|-+.
T Consensus       313 ~vv~ehkdk--~i~~rwh~~-d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  313 MVVAEHKDK--AIQCRWHPQ-DFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEEeccCc--eEEEEecCc-cceeeeccCcceEEEeccC
Confidence            223334332  344455544 4456778899999999763

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.97  E-value=8.4e-28  Score=182.35  Aligned_cols=292  Identities=22%  Similarity=0.422  Sum_probs=219.5

Q ss_pred             cCCcccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCC-------cccccccccccEEEEEECC-CCCEEEE
Q 020798           20 NGHLRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPS-------PLQKFTGHEQGVSDLVFSS-DSRFLVS   90 (321)
Q Consensus        20 ~~h~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~-------~~~~~~~h~~~i~~~~~~~-~~~~l~~   90 (321)
                      .-|.+.|.++...| .|+|+++|+.||.+.+||++.....+.....       ..+...+|+-+|.++.|-| |.-.+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            35889999999987 6899999999999999999875532221111       1223457888999999988 5557888


Q ss_pred             EeCCCcEEEEecCCcceeeeeecCcccEEEEEECCC---CCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEcc
Q 020798           91 ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ---SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR  167 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~  167 (321)
                      ++-|.++++||..+.+....+. ..+.|.+-+++|-   ...+++|..+-.|++.|+++|.....+.+|.+.|.++.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence            9999999999998877655443 4556777777774   34678888899999999999999999999999999999999


Q ss_pred             CCCE-EEEEeCCCeEEEEeCCCC-ceeeee-------------ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 020798          168 DGTM-IVTSSYDGLCRIWDASTG-HCMKTL-------------IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG  232 (321)
Q Consensus       168 ~~~~-l~~~~~dg~i~~~d~~~~-~~~~~~-------------~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~  232 (321)
                      ..++ |++|+.||.|++||++.. .+...+             ...+...+..++|..+|.++++.+.|..+++|+..+|
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence            8875 678999999999999754 232221             1123445788999999999999999999999999877


Q ss_pred             cEE-EEEe--cc---CCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          233 KIL-KTYT--GH---TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       233 ~~~-~~~~--~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      +.. +.+-  .+   ......+.   ....+.++.. -.++.+.++++-++..+..+..|...|.+.++.|+=..+-+|.
T Consensus       279 ~ntl~~~g~~~~n~~~~~~~~~~---~~~s~vfv~~-p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~  354 (397)
T KOG4283|consen  279 RNTLREFGPIIHNQTTSFAVHIQ---SMDSDVFVLF-PNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGD  354 (397)
T ss_pred             cccccccccccccccccceEEEe---ecccceEEEE-ecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccc
Confidence            532 1111  11   11111111   1122333333 3348899999999999999999999999999999988888887


Q ss_pred             ecCCccEEEccc
Q 020798          307 LDNDRTVKIWTQ  318 (321)
Q Consensus       307 ~d~~~~i~iw~~  318 (321)
                      .|  +.|..|..
T Consensus       355 ~d--~ni~~w~p  364 (397)
T KOG4283|consen  355 MN--GNIYMWSP  364 (397)
T ss_pred             cC--Cccccccc
Confidence            54  77888864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.9e-28  Score=192.82  Aligned_cols=285  Identities=18%  Similarity=0.277  Sum_probs=228.8

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCC-EEEEEeCCCcEEEEe
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR-FLVSASDDKTIRLWD  101 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd  101 (321)
                      .++|+++.|+|....|++++.|+.+++|.+.+..+      ..++.+.--.-+|.+..|.|+|. .+++++....++.||
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD  286 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD  286 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccC------hhheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence            46899999999999999999999999999876432      23444444467899999999998 888999999999999


Q ss_pred             cCCcceee--eeecCc-ccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCC
Q 020798          102 VPTATCLK--TLIGHT-NYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD  178 (321)
Q Consensus       102 ~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  178 (321)
                      +.+.+..+  ...++. ..+....++|++++|+..+..|.|.+....+++.+..++. .+.|..+.|+.+++.|++++.+
T Consensus       287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~  365 (514)
T KOG2055|consen  287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGT  365 (514)
T ss_pred             ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCC
Confidence            98876432  333443 3466778899999999999999999999999888877764 5789999999999999999999


Q ss_pred             CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCC------CcEEEEEeccCCceeEEEeEE
Q 020798          179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST------GKILKTYTGHTNSKYCISSTF  252 (321)
Q Consensus       179 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~  252 (321)
                      |.|.+||++...+..++.....-.-+.++.+++|.+|++|+..|.|.|||..+      .+++..+..   ....++...
T Consensus       366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN---Ltt~Itsl~  442 (514)
T KOG2055|consen  366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN---LTTAITSLQ  442 (514)
T ss_pred             ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh---hheeeeeee
Confidence            99999999999888888765555557788899999999999999999999653      345554432   334466666


Q ss_pred             EecCCeEEEEeC--CCCeEEEEEcccceEEEEecC---CCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          253 SVTNGKYIVSGS--EDSCVYLWELQSRKVVQKLEG---HTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       253 ~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +.++.+.||.++  .+..+|+-.+.+......+..   .-+.|+|++|+|.+-+||.|-  ++|.|.+|.+.
T Consensus       443 Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN--e~grv~l~kL~  512 (514)
T KOG2055|consen  443 FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN--EAGRVHLFKLH  512 (514)
T ss_pred             eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec--CCCceeeEeec
Confidence            678899988876  456899988877666554443   235689999999999999997  45899999875

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.5e-28  Score=187.69  Aligned_cols=249  Identities=23%  Similarity=0.478  Sum_probs=194.2

Q ss_pred             cccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC------------c------ceeeeeecCcccEEEEEECCCCC
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT------------A------TCLKTLIGHTNYVFCVNFNPQSN  128 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~  128 (321)
                      ..++.|+..+++.+|++||.++++|+.|.+|+|.|++.            +      ..++++..|.+.|.++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            44678999999999999999999999999999999851            1      23567788999999999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCEEEEEE--eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec--cCCCCCeE
Q 020798          129 MIVSGAFDETVRIWDVKTGKCLKVL--PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI--DDENPPVS  204 (321)
Q Consensus       129 ~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~  204 (321)
                      .|++++.|++|++||+......+.+  .....+|.++.|+|.|.+++.|..-.++++||+.+.++.....  ..+...|+
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~  265 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT  265 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence            9999999999999998754322211  1234689999999999999999999999999999988765432  23456799


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec-cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEe
Q 020798          205 FVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG-HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       205 ~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      ++.+++.|++.++++.||.|++||--+++.+.++.. |.+..  +....+..+++++++.+.|..+++|++.+++.+..+
T Consensus       266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse--vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE--VCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce--eeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            999999999999999999999999888888887754 43332  334444578999999999999999999999999887


Q ss_pred             cCCC--C---CeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          284 EGHT--D---PVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       284 ~~h~--~---~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      .|..  +   --+...|+..+.++..--+ ..+.+.-||.
T Consensus       344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDE-as~slcsWda  382 (430)
T KOG0640|consen  344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDE-ASNSLCSWDA  382 (430)
T ss_pred             ecCCcccchhhhhhhhhcCccceEEcccc-ccCceeeccc
Confidence            6631  1   1234455555555554321 1234555554

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.5e-28  Score=194.95  Aligned_cols=246  Identities=21%  Similarity=0.393  Sum_probs=196.3

Q ss_pred             cccccEEEEEECCCCC-EEEEEeCCCcEEEEecCCcc----------eeeeeecCcccEEEEEECCCC-CEEEEeeCCCc
Q 020798           71 GHEQGVSDLVFSSDSR-FLVSASDDKTIRLWDVPTAT----------CLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDET  138 (321)
Q Consensus        71 ~h~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~  138 (321)
                      .|.+.|+.+.+.|... .+++.+..+.+.|||..+..          +-..+.+|...-+.++|++.. ..+++++.|+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            4889999999999765 56677888999999975432          123678898888889999864 46899999999


Q ss_pred             EEEEecCCCE-------EEEEEeCCCCCeeEEEEccCC-CEEEEEeCCCeEEEEeCCCC-ceeeeeccCCCCCeEEEEEc
Q 020798          139 VRIWDVKTGK-------CLKVLPAHSDPVTAVDFNRDG-TMIVTSSYDGLCRIWDASTG-HCMKTLIDDENPPVSFVKFS  209 (321)
Q Consensus       139 i~~wd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~  209 (321)
                      |.+||+....       ....+..|...|..++|++.. ..|++++.|+.+.+||+|++ .........+...+.+++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            9999986432       345678899999999999954 57889999999999999962 22333445677889999999


Q ss_pred             cC-CCEEEEEecCCeEEEEeCCCCc-EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc----------
Q 020798          210 PN-GKFILVGTLDNTLRLWNYSTGK-ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR----------  277 (321)
Q Consensus       210 ~~-g~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------  277 (321)
                      |- +..||+|+.|++|.+||+++.+ .+..+.+|...+.++  .|++.....||+.+.|+.+.|||+..-          
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V--~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~  359 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQV--EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE  359 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEE--EeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence            94 5667788899999999999754 677888888877655  466677889999999999999998531          


Q ss_pred             ----eEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          278 ----KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       278 ----~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                          +++....||...|..+.|+|...++++.. .+|+.+.||.+.
T Consensus       360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv-aeDN~LqIW~~s  404 (422)
T KOG0264|consen  360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV-AEDNILQIWQMA  404 (422)
T ss_pred             cCCcceeEEecCcccccccccCCCCCCeEEEEe-cCCceEEEeecc
Confidence                34566788999999999999998866543 357899999874

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=4.8e-28  Score=193.60  Aligned_cols=247  Identities=26%  Similarity=0.435  Sum_probs=202.6

Q ss_pred             ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCccee----e-------------ee-ecCcccEEEEEECCCC
Q 020798           66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL----K-------------TL-IGHTNYVFCVNFNPQS  127 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~-------------~~-~~~~~~v~~~~~~~~~  127 (321)
                      ...+..|..++.+++++|+.++.++++.+++|.-|++.+++..    .             .- .+|...+.++++++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            3456779999999999999999999999999999998766522    1             11 2788889999999999


Q ss_pred             CEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEE
Q 020798          128 NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVK  207 (321)
Q Consensus       128 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  207 (321)
                      ++|++|+.|..|.+|+.++.+.++.++.|.+.|.+++|-.....+++++.|..+++|++.....+.+++ .|+..|..+.
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~Id  293 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGVLGID  293 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCccceeeec
Confidence            999999999999999999999999999999999999999888889999999999999998765555554 4556677777


Q ss_pred             EccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec-CC
Q 020798          208 FSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE-GH  286 (321)
Q Consensus       208 ~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h  286 (321)
                      ...-++.+.+|+.|+++++|++... ..-.+.++.+...|+.+    -+...+++|+.+|.|.+|++.+.+++.... .|
T Consensus       294 aL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~----In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH  368 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAF----INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAH  368 (479)
T ss_pred             hhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEE----ecccceeeccCCceEEEeeecccCceeEeeccc
Confidence            7777888888889999999999543 33345566655555443    256789999999999999998877765432 12


Q ss_pred             -----------CCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          287 -----------TDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       287 -----------~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                                 ...|++|+..|..+++|+||  .+|.|++|..+.
T Consensus       369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS--~~G~vrLW~i~~  411 (479)
T KOG0299|consen  369 GVIPELDPVNGNFWITSLAVIPGSDLLASGS--WSGCVRLWKIED  411 (479)
T ss_pred             cccCCccccccccceeeeEecccCceEEecC--CCCceEEEEecC
Confidence                       12789999999999999999  458999998763

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.9e-27  Score=202.31  Aligned_cols=270  Identities=21%  Similarity=0.339  Sum_probs=216.6

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEE
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRL   99 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~i   99 (321)
                      -+|..+-+.++|.|+|+.|.+|+.||.|++|+...-.    ..+..+   ..+...|.+++.  ++.+|++|+.++.|.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~----e~P~ti---~~~g~~v~~ia~--~s~~f~~~s~~~tv~~   80 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE----EEPETI---DISGELVSSIAC--YSNHFLTGSEQNTVLR   80 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc----cCCchh---hccCceeEEEee--cccceEEeeccceEEE
Confidence            4799999999999999999999999999999764321    111111   225566666665  4558999999999999


Q ss_pred             EecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC
Q 020798          100 WDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG  179 (321)
Q Consensus       100 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  179 (321)
                      |.+..++.-..+....-++.+++++.+|++++.|+.|-.|++.++.+......+.+|..+|.++.|+|++++|++.+-||
T Consensus        81 y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG  160 (933)
T KOG1274|consen   81 YKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG  160 (933)
T ss_pred             eeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence            99998876555556677899999999999999999999999999998888889999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeeeecc-------CCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEE
Q 020798          180 LCRIWDASTGHCMKTLID-------DENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF  252 (321)
Q Consensus       180 ~i~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  252 (321)
                      .+++||+.++.+...+..       .....+..++|+|+|..+++...|+.|++|+.........+........ ++.+.
T Consensus       161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~-~~~~~  239 (933)
T KOG1274|consen  161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK-FSDLQ  239 (933)
T ss_pred             eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc-eEEEE
Confidence            999999998765444321       1123467789999988888889999999999999988877765433322 44455


Q ss_pred             EecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEE
Q 020798          253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA  303 (321)
Q Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  303 (321)
                      +.|+|.|||+++.||.|.|||.++-..    +.....|.+++|.|+++-+-
T Consensus       240 wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it  286 (933)
T KOG1274|consen  240 WSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAIT  286 (933)
T ss_pred             EcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeE
Confidence            568899999999999999999987221    23356899999999986543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=5.1e-30  Score=215.27  Aligned_cols=237  Identities=27%  Similarity=0.537  Sum_probs=211.5

Q ss_pred             cccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT  146 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  146 (321)
                      +.+..|...+.++..-..++.+++|+.|..+.+|.+.....+..+.+|...|.++.|+++...|++|+.+|+|++||+..
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence            34557888888888877889999999999999999988877788999999999999999999999999999999999999


Q ss_pred             CEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 020798          147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL  226 (321)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i  226 (321)
                      .+.+.++.+|...+.++.|+|-+.+++.++.|+.+++||++...|...+.. +...+..+.|+|+|++++.++.|..++|
T Consensus       102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki  180 (825)
T KOG0267|consen  102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKI  180 (825)
T ss_pred             hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCCceeeccCCcceeee
Confidence            999999999999999999999999999999999999999997667666544 6667889999999999999999999999


Q ss_pred             EeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          227 WNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       227 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      ||+..|+....|..|......+.   ..+..-+++.|+.|++|++||+++.+++...+.....|.+++|+|++..+.+|-
T Consensus       181 ~d~~agk~~~ef~~~e~~v~sle---~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  181 WDLTAGKLSKEFKSHEGKVQSLE---FHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             ecccccccccccccccccccccc---cCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence            99999999999998887665444   234566789999999999999999999988888888999999999999999885


Q ss_pred             e
Q 020798          307 L  307 (321)
Q Consensus       307 ~  307 (321)
                      .
T Consensus       258 q  258 (825)
T KOG0267|consen  258 Q  258 (825)
T ss_pred             h
Confidence            3

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-28  Score=205.11  Aligned_cols=236  Identities=22%  Similarity=0.463  Sum_probs=199.3

Q ss_pred             EEEEC-CCCCEEEEEeCCCcEEEEecCCcc------eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC--E
Q 020798           78 DLVFS-SDSRFLVSASDDKTIRLWDVPTAT------CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG--K  148 (321)
Q Consensus        78 ~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~  148 (321)
                      .+..+ |.+++|++|+.||.|++|++....      ++.++..|...|..+....+++.|++++.|-+|++|+...+  -
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            34444 467789999999999999975422      35677889999999999999999999999999999998876  4


Q ss_pred             EEEEEeCCCCCeeEEEE-ccCCCEEEEEeCCCeEEEEeCCCCce--e--------eeeccCCCCCeEEEEEccCCCEEEE
Q 020798          149 CLKVLPAHSDPVTAVDF-NRDGTMIVTSSYDGLCRIWDASTGHC--M--------KTLIDDENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       149 ~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~--~--------~~~~~~~~~~~~~~~~~~~g~~l~~  217 (321)
                      ++..+..|.+.|.++++ -++...+++|+-|+.|.+||+.++..  +        .....+...++.+++.++.|..++.
T Consensus       109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs  188 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS  188 (735)
T ss_pred             hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence            67788899999999999 77888999999999999999987622  1        1122234456889999999999999


Q ss_pred             EecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecC
Q 020798          218 GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP  297 (321)
Q Consensus       218 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p  297 (321)
                      |+..+.|++||.++.+.+-.+.+|+..+.++   ...+||..++++++||+|++||+..++++..+..|...|+++..+|
T Consensus       189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~l---l~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~  265 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVL---LVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP  265 (735)
T ss_pred             cCcccceEEeccccccceeeeeccccceEEE---EEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence            9999999999999999999999998876554   3457999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeecCCccEEEccc
Q 020798          298 TENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       298 ~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      +=..+.+|+.  ||.|..=|+
T Consensus       266 sf~~vYsG~r--d~~i~~Tdl  284 (735)
T KOG0308|consen  266 SFTHVYSGGR--DGNIYRTDL  284 (735)
T ss_pred             CcceEEecCC--CCcEEeccc
Confidence            9999999984  577766554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=8.9e-26  Score=186.36  Aligned_cols=270  Identities=19%  Similarity=0.273  Sum_probs=196.0

Q ss_pred             CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEE-EEEeCCCcEEEEecCCcceeeeeec
Q 020798           35 GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL-VSASDDKTIRLWDVPTATCLKTLIG  113 (321)
Q Consensus        35 g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~  113 (321)
                      ++.+++++.|+.+.+|++...        ..+..+..+. .+..++|+|+++.+ ++++.++.|++||..+++....+..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~--------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~   71 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL--------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS   71 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC--------ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC
Confidence            357889999999999987532        2334444443 46789999999876 5667889999999998877665554


Q ss_pred             CcccEEEEEECCCCCEEEE-eeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC-eEEEEeCCCCce
Q 020798          114 HTNYVFCVNFNPQSNMIVS-GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG-LCRIWDASTGHC  191 (321)
Q Consensus       114 ~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~  191 (321)
                      +.. +..++++|+++.+++ ++.++.+++||+++.+.+..++. ...+..++|+|++..++++..++ .+.+||.++++.
T Consensus        72 ~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~  149 (300)
T TIGR03866        72 GPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI  149 (300)
T ss_pred             CCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence            433 467889999987755 45689999999998877766653 33467899999999998888765 567789887765


Q ss_pred             eeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcEEEEEeccC-----CceeEEEeEEEecCCeEEE-EeC
Q 020798          192 MKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKILKTYTGHT-----NSKYCISSTFSVTNGKYIV-SGS  264 (321)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~-~~~  264 (321)
                      .......  .....+.|+|+|+++++++ .++.|++||+.+++.+..+..+.     .........+ .+++++++ +.+
T Consensus       150 ~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~~~~~~~  226 (300)
T TIGR03866       150 VDNVLVD--QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL-TKDGKTAFVALG  226 (300)
T ss_pred             EEEEEcC--CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE-CCCCCEEEEEcC
Confidence            5443322  2346789999999886554 58999999999988776654221     1111112223 46777644 445


Q ss_pred             CCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       265 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .++.+.+||+++++.+..+. +...+.+++|+|++.+|++++. .++.|++||.+.
T Consensus       227 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~-~~~~i~v~d~~~  280 (300)
T TIGR03866       227 PANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNG-VSNDVSVIDVAA  280 (300)
T ss_pred             CCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcC-CCCeEEEEECCC
Confidence            67789999999888766543 3457899999999999988753 357899999864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=6.2e-27  Score=199.69  Aligned_cols=298  Identities=21%  Similarity=0.362  Sum_probs=231.6

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCE-EEEecCCceEEEeeccccCCCCC-------------------------------
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRL-LASSSADKTLLTYSLSSISNSDS-------------------------------   60 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~-l~~~~~d~~v~~~~~~~~~~~~~-------------------------------   60 (321)
                      ..+...++.--+.|+.++|..||+. +|+|+..|.+.+||+++......                               
T Consensus       234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk  313 (910)
T KOG1539|consen  234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLK  313 (910)
T ss_pred             CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCcee
Confidence            3344444433489999999999975 67777789999999976431100                               


Q ss_pred             --------CCCCcccccccccccEEEEEEC-CCCCEEEEEeCCCcEEEEecCC---------------------------
Q 020798           61 --------TPPSPLQKFTGHEQGVSDLVFS-SDSRFLVSASDDKTIRLWDVPT---------------------------  104 (321)
Q Consensus        61 --------~~~~~~~~~~~h~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd~~~---------------------------  104 (321)
                              ..+..++.-.||..+..++.|. .+|.++.+++.|++++.+++..                           
T Consensus       314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~  393 (910)
T KOG1539|consen  314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL  393 (910)
T ss_pred             EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence                    0011223335788899999998 6788999999998877776410                           


Q ss_pred             --------------------------------------cceeeeeecCc------ccEEEEEECCCCCEEEEeeCCCcEE
Q 020798          105 --------------------------------------ATCLKTLIGHT------NYVFCVNFNPQSNMIVSGAFDETVR  140 (321)
Q Consensus       105 --------------------------------------~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~  140 (321)
                                                            .+.-.-...+.      ..+.+++.++.|++.+.|...|.|-
T Consensus       394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id  473 (910)
T KOG1539|consen  394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID  473 (910)
T ss_pred             cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence                                                  00000000122      4678899999999999999999999


Q ss_pred             EEecCCCEEEEEE---eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEE
Q 020798          141 IWDVKTGKCLKVL---PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       141 ~wd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  217 (321)
                      +|++++|-....+   +.|..+|+.++....++.+++++.+|.+++||..+......+..  ...+..+..+.....+++
T Consensus       474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l--~~~~~~iv~hr~s~l~a~  551 (910)
T KOG1539|consen  474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL--GSSITGIVYHRVSDLLAI  551 (910)
T ss_pred             EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc--CCCcceeeeeehhhhhhh
Confidence            9999999887777   68999999999988888999999999999999987765555432  345667778887788899


Q ss_pred             EecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecC
Q 020798          218 GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP  297 (321)
Q Consensus       218 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p  297 (321)
                      +..|-.|+++|..+.+.++.+.+|.+....   ..+++||++|++++.|++||+||+.++.++..+. -..+.+++.|+|
T Consensus       552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd---~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP  627 (910)
T KOG1539|consen  552 ALDDFSIRVVDVVTRKVVREFWGHGNRITD---MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP  627 (910)
T ss_pred             hcCceeEEEEEchhhhhhHHhhccccceee---eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC
Confidence            999999999999999999999999886543   3345899999999999999999999999887664 356889999999


Q ss_pred             CCceEEEEeecCCccEEEcc
Q 020798          298 TENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       298 ~~~~l~s~~~d~~~~i~iw~  317 (321)
                      +|.+|||...|.. -|++|.
T Consensus       628 ngD~LAT~Hvd~~-gIylWs  646 (910)
T KOG1539|consen  628 NGDFLATVHVDQN-GIYLWS  646 (910)
T ss_pred             CCCEEEEEEecCc-eEEEEE
Confidence            9999999998854 489996

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=5.5e-27  Score=178.81  Aligned_cols=238  Identities=25%  Similarity=0.392  Sum_probs=183.7

Q ss_pred             cccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE
Q 020798           73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV  152 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  152 (321)
                      +..|+++.|+|.+..|++++.||++++|++..... +....|..++.+++|.+ ...+++|+.||.|+.+|+.+++. ..
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~   89 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQ   89 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-ee
Confidence            57899999999999999999999999999988854 33445899999999987 46789999999999999988764 44


Q ss_pred             EeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 020798          153 LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG  232 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~  232 (321)
                      +..|..++.++.+.+....+++|+.|++|++||.+........  .....|.+  .+-.|+.|++|+.+..+.+||+++.
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~--d~~kkVy~--~~v~g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF--DQGKKVYC--MDVSGNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc--ccCceEEE--EeccCCEEEEeecCceEEEEEcccc
Confidence            5679999999999998889999999999999999974333332  22234544  4456788999999999999999986


Q ss_pred             cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc----eEEEEecCCC---------CCeEEEEecCCC
Q 020798          233 KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR----KVVQKLEGHT---------DPVISVASHPTE  299 (321)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~---------~~v~~~~~~p~~  299 (321)
                      ....+.. .....+.+.+....|++.-+++++-||.|.+=.+...    +.-..++.|.         .||++++|||-.
T Consensus       166 ~~~~q~r-eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~  244 (323)
T KOG1036|consen  166 DEPFQRR-ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH  244 (323)
T ss_pred             cchhhhc-cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence            5443221 1223344444444567888899999999987555443    2223344553         389999999999


Q ss_pred             ceEEEEeecCCccEEEccccc
Q 020798          300 NIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       300 ~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ..||||+  +||.|.+||...
T Consensus       245 ~tfaTgG--sDG~V~~Wd~~~  263 (323)
T KOG1036|consen  245 GTFATGG--SDGIVNIWDLFN  263 (323)
T ss_pred             ceEEecC--CCceEEEccCcc
Confidence            9999998  569999999853

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.1e-28  Score=177.71  Aligned_cols=248  Identities=25%  Similarity=0.399  Sum_probs=193.4

Q ss_pred             ccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc---eeeeeecCcccEEEEEECC--CCCEEEEeeCCCcEEEEec
Q 020798           70 TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT---CLKTLIGHTNYVFCVNFNP--QSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        70 ~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~  144 (321)
                      +.|++-|.++...-.|+.|+|++.|+.|+|+..+.+.   .+..+.+|.++++.++|..  -|++|++++.||.|.+|.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            5788889988888899999999999999999987653   5678899999999999975  6899999999999999998


Q ss_pred             CCCE--EEEEEeCCCCCeeEEEEccC--CCEEEEEeCCCeEEEEeCCCC--ceeeeeccCCCCCeEEEEEccC---C---
Q 020798          145 KTGK--CLKVLPAHSDPVTAVDFNRD--GTMIVTSSYDGLCRIWDASTG--HCMKTLIDDENPPVSFVKFSPN---G---  212 (321)
Q Consensus       145 ~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~---g---  212 (321)
                      .+++  .......|...|++++|.|.  |-.|++++.||.|.+.+.+..  -....+...|...++.+.|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            7764  23345678999999999996  457889999999999987643  3344555667778999999986   4   


Q ss_pred             --------CEEEEEecCCeEEEEeCCCCc--EEEEEeccCCceeEEEeEEEe-cCCeEEEEeCCCCeEEEEEcccce---
Q 020798          213 --------KFILVGTLDNTLRLWNYSTGK--ILKTYTGHTNSKYCISSTFSV-TNGKYIVSGSEDSCVYLWELQSRK---  278 (321)
Q Consensus       213 --------~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~---  278 (321)
                              +.|++|+.|+.|+||+..+++  ..+.+.+|..-+.-+..+... .....||++++||+|.||......   
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence                    568999999999999987753  334467776543333222111 124689999999999999875321   


Q ss_pred             EEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          279 VVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       279 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ....++.....+..++|++.|+.|+.++  +|..|.+|.-.
T Consensus       248 k~tll~~f~~~~w~vSWS~sGn~LaVs~--GdNkvtlwke~  286 (299)
T KOG1332|consen  248 KKTLLEEFPDVVWRVSWSLSGNILAVSG--GDNKVTLWKEN  286 (299)
T ss_pred             cccccccCCcceEEEEEeccccEEEEec--CCcEEEEEEeC
Confidence            1223444667899999999999999987  55789999753

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.8e-26  Score=188.96  Aligned_cols=276  Identities=21%  Similarity=0.323  Sum_probs=220.2

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccc-cccEEEEEECCCCCEEEEEeCCCcE
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH-EQGVSDLVFSSDSRFLVSASDDKTI   97 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~l~~~~~d~~i   97 (321)
                      +.--..+|.++||+.+.+.||.+-.+|.|.+|.+...       ......+.++ ++.|.+++|++. ..|++.+.+|+|
T Consensus        21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-------w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i   92 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-------WFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSI   92 (691)
T ss_pred             EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCC-------ceeeEEEecCCCCceeeEEEccC-CeEEeecCCceE
Confidence            3445789999999999999999999999999987542       1122233443 467999999955 458888999999


Q ss_pred             EEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE--EEeCCCCCeeEEEEccCCCEEEEE
Q 020798           98 RLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK--VLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      .-||+.+.+....+....+.|++++.+|.+..++.|+.||.++.++...++...  .+....+.+.+++|+|++..++.|
T Consensus        93 ~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~G  172 (691)
T KOG2048|consen   93 TEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGG  172 (691)
T ss_pred             EEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEec
Confidence            999999999888888888999999999999999999999988888887776544  334456889999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeeeec------cC-CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEE
Q 020798          176 SYDGLCRIWDASTGHCMKTLI------DD-ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI  248 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~------~~-~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  248 (321)
                      +.||.|++||..++.......      .. ....+.++.+-.++ .|++|.+.|.|++||...+.+++.+..|...+.++
T Consensus       173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~L  251 (691)
T KOG2048|consen  173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLAL  251 (691)
T ss_pred             ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEE
Confidence            999999999999887655211      11 22345666666555 68899999999999999999999999988887666


Q ss_pred             EeEEEecCCeEEEEeCCCCeEEEEEcccceE----EEEecCCCCCeEEEEecCCCceEEEEeec
Q 020798          249 SSTFSVTNGKYIVSGSEDSCVYLWELQSRKV----VQKLEGHTDPVISVASHPTENIIASGALD  308 (321)
Q Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~p~~~~l~s~~~d  308 (321)
                      ..   .+++.++.+++-|+.|.-|...+.+.    ......|...|.+++..++  .+.+|+.|
T Consensus       252 av---~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d  310 (691)
T KOG2048|consen  252 AV---ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRD  310 (691)
T ss_pred             EE---cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEeccee
Confidence            54   36678899999999998888765532    2334568889999998766  88888866

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.4e-27  Score=187.19  Aligned_cols=229  Identities=23%  Similarity=0.414  Sum_probs=192.3

Q ss_pred             cccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC-------
Q 020798           73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK-------  145 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-------  145 (321)
                      .+.|.+++-+|+|.+|+.|+..|.|++|.+.++..+..+.+|-..|+|+.|+.|+..|++|+.||.|.+|++.       
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            4679999999999999999899999999999999998899999999999999999999999999999999862       


Q ss_pred             --CCEEEEEEeCCCCCeeEEEEccCC--CEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC
Q 020798          146 --TGKCLKVLPAHSDPVTAVDFNRDG--TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD  221 (321)
Q Consensus       146 --~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d  221 (321)
                        +.++...+..|.-+|+++...+.|  .++++++.|.++++||+..+..+..+..  ...+.+++.+|.+..+++|+.+
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f--p~si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF--PSSIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec--CCcceeEEEcccccEEEecCCc
Confidence              335667788899999999887753  4899999999999999999987777643  4568899999999999999999


Q ss_pred             CeEEEEeCCCC----------------cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC
Q 020798          222 NTLRLWNYSTG----------------KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG  285 (321)
Q Consensus       222 ~~i~i~d~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  285 (321)
                      |.|.+.++...                ..+..+.+|.+. ..+++.....||..|++|+.||.|+|||+.+.++++++..
T Consensus       239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~  317 (476)
T KOG0646|consen  239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-SAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT  317 (476)
T ss_pred             ceEEeeehhcCCcccccccccccccccceeeeeccccCC-cceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence            99998886432                234456667661 1244444457899999999999999999999998888776


Q ss_pred             CCCCeEEEEecCCCceEEE
Q 020798          286 HTDPVISVASHPTENIIAS  304 (321)
Q Consensus       286 h~~~v~~~~~~p~~~~l~s  304 (321)
                      ..++|+.+.+.|-.+-...
T Consensus       318 ~kgpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  318 SKGPVTNLQINPLERGIIL  336 (476)
T ss_pred             hccccceeEeeccccceec
Confidence            6789999999877554443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4e-27  Score=180.59  Aligned_cols=272  Identities=27%  Similarity=0.436  Sum_probs=209.6

Q ss_pred             CCcccc--ccCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeecc------cc---------C--------
Q 020798            2 SSDQSL--ESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLS------SI---------S--------   56 (321)
Q Consensus         2 ~~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~------~~---------~--------   56 (321)
                      |.|++.  =+.........+.||.+.|.+++|++.+.++++++.|++..||...      ..         +        
T Consensus       167 SADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~  246 (481)
T KOG0300|consen  167 SADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEH  246 (481)
T ss_pred             ccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccc
Confidence            445433  2333444567789999999999999999999999999999999511      00         0        


Q ss_pred             --------CCCC-CCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCC
Q 020798           57 --------NSDS-TPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS  127 (321)
Q Consensus        57 --------~~~~-~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  127 (321)
                              ..+. ...-|+..+++|...|.+..|-..|+.+++++.|.+..+||++++..+..+.+|....+.++-+|.-
T Consensus       247 ~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ  326 (481)
T KOG0300|consen  247 NRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ  326 (481)
T ss_pred             ccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc
Confidence                    0000 0112566788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeeCCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce-eeeeccCCCCCeEE
Q 020798          128 NMIVSGAFDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC-MKTLIDDENPPVSF  205 (321)
Q Consensus       128 ~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~  205 (321)
                      +.+++++.|.+.++||++.. ..+..|++|...|+++.|..+. .+++++.|.+|++||+++-.. +..+.  ...+++.
T Consensus       327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NR  403 (481)
T KOG0300|consen  327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANR  403 (481)
T ss_pred             eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee--cCCccce
Confidence            99999999999999999843 3567889999999999998765 578999999999999986432 33332  2456788


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCcEEE----EEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc
Q 020798          206 VKFSPNGKFILVGTLDNTLRLWNYSTGKILK----TYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR  277 (321)
Q Consensus       206 ~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (321)
                      ++.+..++.++.-..+..|++||+...++.+    .-++|...+.|....--.+ -.-|++++.|..+.=|.+...
T Consensus       404 vavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp-~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  404 VAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP-ACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             eEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc-ccccccccccceeeeeEeccc
Confidence            9999999999999989999999987554322    2245555444433222222 234778899999999998654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.2e-28  Score=188.64  Aligned_cols=241  Identities=20%  Similarity=0.363  Sum_probs=194.2

Q ss_pred             ccccccccccEEEEEECCCC-CEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           66 LQKFTGHEQGVSDLVFSSDS-RFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      +..+.+|.++|.+++=+|.. ..+++|+.||.|+|||+....+...+.+|.+.|..+++..  ..+++++.|.+|+.|-+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            44568999999999999976 7899999999999999999999999999999999999987  67889999999999987


Q ss_pred             CCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCE-EEEEecCCe
Q 020798          145 KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKF-ILVGTLDNT  223 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~~~d~~  223 (321)
                      ... +..++.+ ...+..+.-+..+..+++|+.+  |.+||..-..++..+.-. -..+.++.|+|.... |+++.+|+.
T Consensus       137 ~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETsILas~~sDrs  211 (433)
T KOG0268|consen  137 DGP-PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETSILASCASDRS  211 (433)
T ss_pred             cCC-cceeeec-cccccccccccccccccccCce--eeecccccCCccceeecC-CCceeEEecCCCcchheeeeccCCc
Confidence            653 4444433 4556677777777788888765  889998655555554333 235788999997655 555669999


Q ss_pred             EEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc-eEEEEecCCCCCeEEEEecCCCceE
Q 020798          224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR-KVVQKLEGHTDPVISVASHPTENII  302 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l  302 (321)
                      |.+||++.+++++.......+   -..+|.+ ++..+++|++|..++.||++.. ..+....+|.++|.++.|+|.|..+
T Consensus       212 IvLyD~R~~~Pl~KVi~~mRT---N~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef  287 (433)
T KOG0268|consen  212 IVLYDLRQASPLKKVILTMRT---NTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF  287 (433)
T ss_pred             eEEEecccCCccceeeeeccc---cceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence            999999999888776433222   2234554 7888999999999999999875 4567788999999999999999999


Q ss_pred             EEEeecCCccEEEcccc
Q 020798          303 ASGALDNDRTVKIWTQE  319 (321)
Q Consensus       303 ~s~~~d~~~~i~iw~~~  319 (321)
                      ++||.|  .+|+||...
T Consensus       288 vsgsyD--ksIRIf~~~  302 (433)
T KOG0268|consen  288 VSGSYD--KSIRIFPVN  302 (433)
T ss_pred             cccccc--ceEEEeecC
Confidence            999986  789999865

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=7.7e-27  Score=193.74  Aligned_cols=288  Identities=24%  Similarity=0.410  Sum_probs=211.0

Q ss_pred             EEEECCC---CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 020798           28 SVKFSHD---GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT  104 (321)
Q Consensus        28 ~~~~s~~---g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  104 (321)
                      +..|++.   ..+||.+.+||.|.+++.......  .....+..+..|...|.++.|.|-...|++++.|.+++.||+..
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr--~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR--LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcc--hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence            3566642   357999999999999988765432  11222445668999999999999667889999999999999999


Q ss_pred             cceeee--eecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCE--------------------E-------EEEEe
Q 020798          105 ATCLKT--LIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGK--------------------C-------LKVLP  154 (321)
Q Consensus       105 ~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~--------------------~-------~~~~~  154 (321)
                      .++...  +.+|...+.+++|.|.+ ..|++|+.||.|.+||++-..                    .       +....
T Consensus       132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence            887655  78999999999999965 568899999999999985321                    0       00111


Q ss_pred             CCCCCeeE---EEEccCCCEEEEEeC-CCeEEEEeCCCCceeeeec--------cC--CCCCeEEEEEccCCCEEEEEec
Q 020798          155 AHSDPVTA---VDFNRDGTMIVTSSY-DGLCRIWDASTGHCMKTLI--------DD--ENPPVSFVKFSPNGKFILVGTL  220 (321)
Q Consensus       155 ~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~--------~~--~~~~~~~~~~~~~g~~l~~~~~  220 (321)
                      .+...|.+   +-+..|...|++++. |+.|+|||++.........        ..  ....+.++..+..|.+|++.+.
T Consensus       212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt  291 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT  291 (720)
T ss_pred             cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec
Confidence            22333443   444567778888877 9999999998764332110        00  1123566777778999999999


Q ss_pred             CCeEEEEeCCCC--cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceE-EEEecCCCCCeEEEEecC
Q 020798          221 DNTLRLWNYSTG--KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV-VQKLEGHTDPVISVASHP  297 (321)
Q Consensus       221 d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~p  297 (321)
                      |+.|.+|++...  .++..+.++......+.... .+++.++++|+.|...++|.+.+.+. ...+.+|...|++++|.|
T Consensus       292 D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~l-Spd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  292 DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSEL-SPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             CCcEEEEeccccCcCchhhccCcccceeeeeeec-CCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence            999999998764  34555555544444343333 47899999999999999999987654 456789999999999988


Q ss_pred             CCc-eEEEEeecCCccEEEccccc
Q 020798          298 TEN-IIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       298 ~~~-~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ... -+|+++  +|-+++||++.+
T Consensus       371 S~~t~v~TcS--dD~~~kiW~l~~  392 (720)
T KOG0321|consen  371 SATTPVATCS--DDFRVKIWRLSN  392 (720)
T ss_pred             ccCCCceeec--cCcceEEEeccC
Confidence            753 366666  357899999854

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.4e-27  Score=174.44  Aligned_cols=250  Identities=20%  Similarity=0.312  Sum_probs=193.7

Q ss_pred             eccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC--CCCEEEEEeCCC
Q 020798           18 TLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS--DSRFLVSASDDK   95 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~l~~~~~d~   95 (321)
                      ..+.|.+.|..+...--|++||||+.|++|+|+.+...     .+..++.++.+|.++|..++|..  .|.+||+++.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n-----~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg   80 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNN-----GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG   80 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCC-----CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence            44679999999998888999999999999999987642     22356788999999999999976  799999999999


Q ss_pred             cEEEEecCCcce--eeeeecCcccEEEEEECCC--CCEEEEeeCCCcEEEEecCCC---EEEEEEeCCCCCeeEEEEccC
Q 020798           96 TIRLWDVPTATC--LKTLIGHTNYVFCVNFNPQ--SNMIVSGAFDETVRIWDVKTG---KCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        96 ~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      .|.||.-..++-  ......|...+++++|.|.  |-.|++++.||.|.+.+.+..   ...+....|.-.|++++|.|.
T Consensus        81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen   81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA  160 (299)
T ss_pred             eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence            999999877743  3345679999999999996  457899999999999988754   122345678889999999986


Q ss_pred             ---C-----------CEEEEEeCCCeEEEEeCCCCce-eeeeccCCCCCeEEEEEccCC----CEEEEEecCCeEEEEeC
Q 020798          169 ---G-----------TMIVTSSYDGLCRIWDASTGHC-MKTLIDDENPPVSFVKFSPNG----KFILVGTLDNTLRLWNY  229 (321)
Q Consensus       169 ---~-----------~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~g----~~l~~~~~d~~i~i~d~  229 (321)
                         |           ..|++|+.|..|++|+..++.- +...+..|..-+..++|.|.-    .+|++++.||++.||..
T Consensus       161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence               4           4699999999999999887532 222245666678889999963    56899999999999986


Q ss_pred             CCC-cE--EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          230 STG-KI--LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       230 ~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      +.. +.  ...+.......+.++  ++ ..|..|+.++.|+.|.+|.-.
T Consensus       241 ~~e~e~wk~tll~~f~~~~w~vS--WS-~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  241 DEEYEPWKKTLLEEFPDVVWRVS--WS-LSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cCccCcccccccccCCcceEEEE--Ee-ccccEEEEecCCcEEEEEEeC
Confidence            532 11  111112223334433  33 569999999999999999754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=2.6e-26  Score=192.26  Aligned_cols=236  Identities=27%  Similarity=0.475  Sum_probs=194.2

Q ss_pred             eeccCCcccEEE-EEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC
Q 020798           17 QTLNGHLRAISS-VKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        17 ~~~~~h~~~v~~-~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      ..+.+|.+-|.. ++|.+ ++-.|.+|+.|..+.+|.+.        ...|+..+.+|+..|.++....++. +++|+.|
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~--------~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD  121 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS--------QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWD  121 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecC--------CCCchhhhhccccceeeeecCCcCc-eEecccc
Confidence            456778888877 88886 44569999999999999654        4567889999999999999888887 8999999


Q ss_pred             CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEE
Q 020798           95 KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      .++++|-..  ++...+.+|...|+.+..-|++ .+++|+.|.+|++|.-  ++..+++.+|.+.|..+++-+++ .|++
T Consensus       122 ~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flS  195 (745)
T KOG0301|consen  122 STAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLS  195 (745)
T ss_pred             cceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEe
Confidence            999999754  4455689999999999999987 8999999999999964  78889999999999999999875 5889


Q ss_pred             EeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEe
Q 020798          175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV  254 (321)
Q Consensus       175 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (321)
                      |+.||.|++|++ +++++.++. .|...+.++....++..++++++|++++||+..  ...+.+.-.....++..+.   
T Consensus       196 csNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L---  268 (745)
T KOG0301|consen  196 CSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVL---  268 (745)
T ss_pred             ecCCceEEEEec-cCceeeeee-ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEe---
Confidence            999999999999 566666653 456678888877888899999999999999866  5666665555555555443   


Q ss_pred             cCCeEEEEeCCCCeEEEEEcc
Q 020798          255 TNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       255 ~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      ++|. +++|++||.||||...
T Consensus       269 ~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  269 LNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eCCC-EEEeccCceEEEEEec
Confidence            4565 6789999999999875

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=4.1e-26  Score=182.55  Aligned_cols=298  Identities=21%  Similarity=0.270  Sum_probs=220.5

Q ss_pred             eeccCCcccEEEEEECCCC--CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-CCEEEEEeC
Q 020798           17 QTLNGHLRAISSVKFSHDG--RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-SRFLVSASD   93 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g--~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~   93 (321)
                      ...+-|.+.|++++|+|..  +++|+|..-|.|-+|++...    .........+..|.++|.+|.|+|. -..+++.+.
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~----~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy  255 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQ----EKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY  255 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCC----CCccCceEEeccCCccccceEecCCChhheeeecc
Confidence            3345688999999999965  47899999999999998521    1222334567889999999999995 467889999


Q ss_pred             CCcEEEEecCCcce--eeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEE-EEEEeCCCCCeeEEEEccCCC
Q 020798           94 DKTIRLWDVPTATC--LKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKC-LKVLPAHSDPVTAVDFNRDGT  170 (321)
Q Consensus        94 d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~  170 (321)
                      ||+|+.-|++....  +.....-...+..+.++.+...++.+..=|...+||++.+.. ...+..|...|.+++++|...
T Consensus       256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p  335 (498)
T KOG4328|consen  256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP  335 (498)
T ss_pred             CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence            99999999987643  222222334566778887777777777777999999987654 455667888999999999765


Q ss_pred             -EEEEEeCCCeEEEEeCCCCceee---eeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC----CCcEEEEEe-cc
Q 020798          171 -MIVTSSYDGLCRIWDASTGHCMK---TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS----TGKILKTYT-GH  241 (321)
Q Consensus       171 -~l~~~~~dg~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~----~~~~~~~~~-~~  241 (321)
                       ++++++.|++.++||++.-....   .....|...|.++.|+|.+-.|++.+.|+.|+|||..    .-.+...+. .+
T Consensus       336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~  415 (498)
T KOG4328|consen  336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN  415 (498)
T ss_pred             hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence             68899999999999998532211   1223566779999999988779999999999999973    222333321 11


Q ss_pred             CC--ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCC-CeEEE-EecCCCceEEEEeecCCccEEEcc
Q 020798          242 TN--SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD-PVISV-ASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       242 ~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~-~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ..  ....+.+. +.++..++++|..-..|-|||-..++.+..+..... .|.++ .|||-+..+++|+. .-|.|.||.
T Consensus       416 ~t~RwlT~fKA~-W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~-s~Gki~vft  493 (498)
T KOG4328|consen  416 RTGRWLTPFKAA-WDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGN-SSGKIYVFT  493 (498)
T ss_pred             cccccccchhhe-eCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCC-ccceEEEEe
Confidence            11  11122222 346888999999999999999988887877665443 67776 79999997787764 357899998


Q ss_pred             ccc
Q 020798          318 QEK  320 (321)
Q Consensus       318 ~~~  320 (321)
                      -++
T Consensus       494 ~k~  496 (498)
T KOG4328|consen  494 NKK  496 (498)
T ss_pred             cCC
Confidence            775

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=6.8e-27  Score=189.70  Aligned_cols=251  Identities=21%  Similarity=0.358  Sum_probs=184.3

Q ss_pred             cccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc----eeeee-ecCcccEEEEEECCCCCEEEEeeCCCcEEE
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT----CLKTL-IGHTNYVFCVNFNPQSNMIVSGAFDETVRI  141 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  141 (321)
                      ..+++|...|.++++.|.|-.|++|+.|..|++||+..-.    ..+.+ ......|.++.|++.++.|++.+.....++
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            3567888999999999999999999999999999986432    11222 123446889999999999999988899999


Q ss_pred             EecCCCEEEEE------------EeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEeCCCCceeeeec-----cCCCCCe
Q 020798          142 WDVKTGKCLKV------------LPAHSDPVTAVDFNRDGT-MIVTSSYDGLCRIWDASTGHCMKTLI-----DDENPPV  203 (321)
Q Consensus       142 wd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~~~  203 (321)
                      +|-...+....            -++|...+++.+|+|..+ .|++++.||++++||+...+.....+     ....-++
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~  320 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV  320 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence            99543332222            246888899999999754 78999999999999997654322221     1223457


Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEeCCCCcE--E-EEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce-E
Q 020798          204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKI--L-KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK-V  279 (321)
Q Consensus       204 ~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~  279 (321)
                      +.++|+++|++|++|+.||.|.+|+......  . ..-..|.. ...+++..++.+|++|++-+.|+++++||+++.+ .
T Consensus       321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~-g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp  399 (641)
T KOG0772|consen  321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP-GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP  399 (641)
T ss_pred             eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC-CCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence            8899999999999999999999999755322  1 12233443 1123444445799999999999999999998754 4


Q ss_pred             EEEecCC--CCCeEEEEecCCCceEEEEeec----CCccEEEccc
Q 020798          280 VQKLEGH--TDPVISVASHPTENIIASGALD----NDRTVKIWTQ  318 (321)
Q Consensus       280 ~~~~~~h--~~~v~~~~~~p~~~~l~s~~~d----~~~~i~iw~~  318 (321)
                      +....+.  ..+-+.++|||+.+++++|..-    ..+.+.+||.
T Consensus       400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~  444 (641)
T KOG0772|consen  400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR  444 (641)
T ss_pred             hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence            4444443  2456899999999999998532    2345666654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.8e-27  Score=197.98  Aligned_cols=297  Identities=19%  Similarity=0.330  Sum_probs=212.2

Q ss_pred             ccCCccee-eeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC-CC
Q 020798            8 ESFRPYTL-TQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS-DS   85 (321)
Q Consensus         8 ~~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~   85 (321)
                      .++.|++- ...++++   ..++.-+++-..++.++ ...+++|............... ..-..-.-.+.++.|.. +.
T Consensus        26 ds~l~~~~~~~~~k~~---~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~-k~kqn~~~S~~DVkW~~~~~  100 (839)
T KOG0269|consen   26 DSYLPYDKMNCKLKAK---ANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRF-KTKQNKFYSAADVKWGQLYS  100 (839)
T ss_pred             cccccchheeeecccc---cceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeec-ccccceeeehhhcccccchh
Confidence            45556652 2234444   44556778888888877 4577788665432211100000 00000112356788875 46


Q ss_pred             CEEEEEeCCCcEEEEecCC---cceeeeeecCcccEEEEEECCC-CCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCee
Q 020798           86 RFLVSASDDKTIRLWDVPT---ATCLKTLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVT  161 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~  161 (321)
                      ++||+++..|.|.+||+..   .+.+..+..|...+.+++|++. .++|++|+.||.|++||++..+...++.+....|.
T Consensus       101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR  180 (839)
T KOG0269|consen  101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR  180 (839)
T ss_pred             hhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence            7999999999999999977   4555567889999999999985 57899999999999999999888888888888999


Q ss_pred             EEEEccC-CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec
Q 020798          162 AVDFNRD-GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG  240 (321)
Q Consensus       162 ~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~  240 (321)
                      ++.|+|. +..|+++...|.+.+||++........+..|..++.++.|+|++.+|++|+.|++|+|||+.+.+.-....-
T Consensus       181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI  260 (839)
T KOG0269|consen  181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI  260 (839)
T ss_pred             ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE
Confidence            9999995 668999999999999999977655555667889999999999999999999999999999886554333322


Q ss_pred             cCCceeEEEeEEEecC-CeEEEEeC--CCCeEEEEEcccce-EEEEecCCCCCeEEEEecC-CCceEEEEeecCCccE
Q 020798          241 HTNSKYCISSTFSVTN-GKYIVSGS--EDSCVYLWELQSRK-VVQKLEGHTDPVISVASHP-TENIIASGALDNDRTV  313 (321)
Q Consensus       241 ~~~~~~~~~~~~~~~~-~~~l~~~~--~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~d~~~~i  313 (321)
                      ++.  ..+....+.|. ..+||+++  .|-.|+|||++..- +...+..|...++.++|.. |-..|-+++.  |++|
T Consensus       261 nTi--apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK--D~tv  334 (839)
T KOG0269|consen  261 NTI--APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK--DGTV  334 (839)
T ss_pred             eec--ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC--ccHH
Confidence            221  22333333343 45566664  57789999998654 3467788999999999964 3455666663  3544

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=1e-25  Score=188.75  Aligned_cols=304  Identities=25%  Similarity=0.409  Sum_probs=228.8

Q ss_pred             cceeeeeccCCcccEEEEEECCCCC---EEEEecCCceEEEeeccccCCCC---------CCCCCcc-------------
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGR---LLASSSADKTLLTYSLSSISNSD---------STPPSPL-------------   66 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~---~l~~~~~d~~v~~~~~~~~~~~~---------~~~~~~~-------------   66 (321)
                      .++....+.||.+.|.+++|+..+.   +||++|.|..|++|.+.-.....         .....+.             
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            4677889999999999999986543   78999999999999764322111         0001111             


Q ss_pred             -cccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCccee-------eeeecCcccEEEEEECCCCCEEEEeeCCCc
Q 020798           67 -QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL-------KTLIGHTNYVFCVNFNPQSNMIVSGAFDET  138 (321)
Q Consensus        67 -~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  138 (321)
                       ..+.||++=|+++.|+|++..|++++.|.++.+|...+..-+       ..+.+.....+..-|+|+++.+++-+..|-
T Consensus       260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence             123489999999999999999999999999999987665321       122334456888999999999999999999


Q ss_pred             EEEEecCCC---EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCC--------------C------------
Q 020798          139 VRIWDVKTG---KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST--------------G------------  189 (321)
Q Consensus       139 i~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------~------------  189 (321)
                      .++|..+..   .....+.+|.+.|++++|+|.|.+|++.+.|.+-|+|-.-.              |            
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~  419 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED  419 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence            999983332   22334568999999999999999999999998888763210              0            


Q ss_pred             ---------ceeee----------------------------------------e-------------------------
Q 020798          190 ---------HCMKT----------------------------------------L-------------------------  195 (321)
Q Consensus       190 ---------~~~~~----------------------------------------~-------------------------  195 (321)
                               +..+.                                        +                         
T Consensus       420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~  499 (764)
T KOG1063|consen  420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE  499 (764)
T ss_pred             ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence                     00000                                        0                         


Q ss_pred             ---------------------ccCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEeCCCCcEEEEEeccCCceeEEE
Q 020798          196 ---------------------IDDENPPVSFVKFSPNGKFILVGTLD-----NTLRLWNYSTGKILKTYTGHTNSKYCIS  249 (321)
Q Consensus       196 ---------------------~~~~~~~~~~~~~~~~g~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~  249 (321)
                                           +-+|...+.+++.+|+|+++++++..     ..|++|+..+...+..+.+|.-.+   +
T Consensus       500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV---T  576 (764)
T KOG1063|consen  500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV---T  576 (764)
T ss_pred             ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE---E
Confidence                                 00122346678999999999998754     359999999988888888887654   4


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceE----EEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKV----VQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ...+++|+++|++.+.|+++.+|.......    ....+.|..-|+++.|+|++.++||+|.  |..|++|...+
T Consensus       577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSR--DK~VkVW~~~~  649 (764)
T KOG1063|consen  577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASR--DKKVKVWEEPD  649 (764)
T ss_pred             EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecC--CceEEEEeccC
Confidence            444568999999999999999999854322    2346789999999999999999999995  57999998754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=1.9e-25  Score=190.75  Aligned_cols=298  Identities=17%  Similarity=0.307  Sum_probs=231.8

Q ss_pred             cccCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCC
Q 020798            7 LESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR   86 (321)
Q Consensus         7 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~   86 (321)
                      |-..+..+...+++++...|+++.=+|--..+|.|-.+|.|.++++..        .+.+..++...+.|++++|..||+
T Consensus       186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~--------dkil~sFk~d~g~VtslSFrtDG~  257 (910)
T KOG1539|consen  186 LWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF--------DKILMSFKQDWGRVTSLSFRTDGN  257 (910)
T ss_pred             EEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc--------CcEEEEEEccccceeEEEeccCCC
Confidence            344556667788999999999999999999999999999999998753        334555654458999999999997


Q ss_pred             -EEEEEeCCCcEEEEecCCcceeeeee-cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC--C---------------
Q 020798           87 -FLVSASDDKTIRLWDVPTATCLKTLI-GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT--G---------------  147 (321)
Q Consensus        87 -~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~--~---------------  147 (321)
                       .+++|+..|.+.+||++..+.+..+. .|.+.+....+-|....+++++.|..+++|=..+  +               
T Consensus       258 p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp  337 (910)
T KOG1539|consen  258 PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP  337 (910)
T ss_pred             eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence             55677788999999999887766554 6777777777777777777777777766662110  0               


Q ss_pred             -------------------------------------E---------------------EEEEE--------------eC
Q 020798          148 -------------------------------------K---------------------CLKVL--------------PA  155 (321)
Q Consensus       148 -------------------------------------~---------------------~~~~~--------------~~  155 (321)
                                                           +                     ++..+              ..
T Consensus       338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~  417 (910)
T KOG1539|consen  338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA  417 (910)
T ss_pred             hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence                                                 0                     00000              00


Q ss_pred             -----------------------CC------CCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec--cCCCCCeE
Q 020798          156 -----------------------HS------DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI--DDENPPVS  204 (321)
Q Consensus       156 -----------------------~~------~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~  204 (321)
                                             +.      ..+++++.++.|++.+.|...|+|-+|++.+|-....+.  ..+..++.
T Consensus       418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~  497 (910)
T KOG1539|consen  418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT  497 (910)
T ss_pred             ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee
Confidence                                   01      346788888889999999999999999999886666552  35677899


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec
Q 020798          205 FVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE  284 (321)
Q Consensus       205 ~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  284 (321)
                      .++.+..++.+++++.+|.+++||..+..++..+.-...    +...........++.+..|-.|+++|+.+.+.+..+.
T Consensus       498 gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~----~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~  573 (910)
T KOG1539|consen  498 GLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS----ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW  573 (910)
T ss_pred             EEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC----cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence            999999999999999999999999998887777643222    2222222345678889999999999999999999999


Q ss_pred             CCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          285 GHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       285 ~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      ||.+.|++++|||||++|++++.|  ++|++||+
T Consensus       574 gh~nritd~~FS~DgrWlisasmD--~tIr~wDl  605 (910)
T KOG1539|consen  574 GHGNRITDMTFSPDGRWLISASMD--STIRTWDL  605 (910)
T ss_pred             ccccceeeeEeCCCCcEEEEeecC--CcEEEEec
Confidence            999999999999999999999965  89999997

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=6e-27  Score=189.59  Aligned_cols=238  Identities=24%  Similarity=0.392  Sum_probs=198.3

Q ss_pred             ccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 020798           24 RAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP  103 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  103 (321)
                      .-|.++.+.|||+.|++|++-.++.|||+..      ..+.....++...-..+.++.+||.+.+++++.||.|.|||+.
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAa------pTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh  539 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAA------PTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH  539 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccC------CCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence            4678889999999999999999999999864      2233344444444567889999999999999999999999999


Q ss_pred             CcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEE
Q 020798          104 TATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRI  183 (321)
Q Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  183 (321)
                      +...++.+.+|.+.+.||.++++|..|-+|+-|.++|.||++.++...... ....|.++.++|++..+++|-.++.+-+
T Consensus       540 nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vev  618 (705)
T KOG0639|consen  540 NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEV  618 (705)
T ss_pred             cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEE
Confidence            999999999999999999999999999999999999999999987665433 3567999999999999999999998877


Q ss_pred             EeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEe
Q 020798          184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG  263 (321)
Q Consensus       184 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  263 (321)
                      ......+  +..+..++..|.++.|.+-|+++++.+.|+-+..|...-|..+...+... .   +.++-...|.++++||
T Consensus       619 lh~skp~--kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S-s---VlsCDIS~ddkyIVTG  692 (705)
T KOG0639|consen  619 LHTSKPE--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-S---VLSCDISFDDKYIVTG  692 (705)
T ss_pred             EecCCcc--ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccC-c---ceeeeeccCceEEEec
Confidence            7665433  33445567789999999999999999999999999998888776655432 2   3334444688999999


Q ss_pred             CCCCeEEEEEc
Q 020798          264 SEDSCVYLWEL  274 (321)
Q Consensus       264 ~~dg~i~vwd~  274 (321)
                      +.|....||.+
T Consensus       693 SGdkkATVYeV  703 (705)
T KOG0639|consen  693 SGDKKATVYEV  703 (705)
T ss_pred             CCCcceEEEEE
Confidence            99999888875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.5e-27  Score=199.05  Aligned_cols=243  Identities=23%  Similarity=0.406  Sum_probs=192.5

Q ss_pred             cEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC-CEEEEEeCCCcEEEEec
Q 020798           25 AISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS-RFLVSASDDKTIRLWDV  102 (321)
Q Consensus        25 ~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~  102 (321)
                      .+..+.|+. +.++|||++..|.|.+||+...     .....+..|..|++.++++.|++.. .+|++|+.||.|++||+
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~-----~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl  163 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKS-----IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL  163 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCcc-----ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence            445577873 5689999999999999999752     2234466789999999999999864 67889999999999999


Q ss_pred             CCcceeeeeecCcccEEEEEECCC-CCEEEEeeCCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCe
Q 020798          103 PTATCLKTLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGL  180 (321)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  180 (321)
                      +..+....+.+..+.|..+.|+|. ++.|+++...|.+++||++.. ++...+..|.++|.++.|+|++.+|++|+.|+.
T Consensus       164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~  243 (839)
T KOG0269|consen  164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM  243 (839)
T ss_pred             ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc
Confidence            998887888888889999999984 678999999999999999865 456677899999999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEE-EEEe--cCCeEEEEeCCCC-cEEEEEeccCCceeEEEeEEEecC
Q 020798          181 CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFI-LVGT--LDNTLRLWNYSTG-KILKTYTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       181 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~~~~--~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  256 (321)
                      ++|||..+++...........++..++|-|..++. ++++  .|-.|+|||++.. -+...+..|......+  .|...|
T Consensus       244 vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i--~W~~~d  321 (839)
T KOG0269|consen  244 VKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI--AWDSGD  321 (839)
T ss_pred             EEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce--eccCCC
Confidence            99999986654333333455789999999987664 4443  4778999999754 3456677776654333  333445


Q ss_pred             CeEEEEeCCCCeEEEEEc
Q 020798          257 GKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~  274 (321)
                      ...+.+++.||.|..-.+
T Consensus       322 ~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  322 RINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             ceeeEeecCccHHHHhhh
Confidence            678899999998765433

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7.4e-25  Score=183.20  Aligned_cols=242  Identities=17%  Similarity=0.320  Sum_probs=196.2

Q ss_pred             cccEEEEEECCCCCEEEEEeCCCcEEEEecCCccee-eeeecC-cccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEE
Q 020798           73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL-KTLIGH-TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCL  150 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  150 (321)
                      ..+|.+++|+.+.+.||.+-.+|.|.+|++..+=.. ..+.++ ...|..++|++ +..|++.+.+|.|..||+.+.+..
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~  103 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQK  103 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCcee
Confidence            367999999999999999999999999999876332 333343 45689999994 667889999999999999999999


Q ss_pred             EEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceee-eeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          151 KVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK-TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                      ..+....++|++++.+|.+..++.|+.||.+..++...++... +.+......+.++.|+|++..++.|+.||.|++||.
T Consensus       104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~  183 (691)
T KOG2048|consen  104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV  183 (691)
T ss_pred             EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence            9999899999999999999999999999988888887766543 333444578999999999999999999999999999


Q ss_pred             CCCcEEEEEec----cCC-ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEE
Q 020798          230 STGKILKTYTG----HTN-SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIAS  304 (321)
Q Consensus       230 ~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  304 (321)
                      .++..+.....    -.. ...++-...+- ....+++|.+.|+|.+||...+.+++.+..|...|.+++..++++++.+
T Consensus       184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfs  262 (691)
T KOG2048|consen  184 KSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFS  262 (691)
T ss_pred             CCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEE
Confidence            99887663221    111 22222222222 3457999999999999999999999999999999999999999999999


Q ss_pred             EeecCCccEEEccc
Q 020798          305 GALDNDRTVKIWTQ  318 (321)
Q Consensus       305 ~~~d~~~~i~iw~~  318 (321)
                      ++.|  +.|.-+..
T Consensus       263 aGvd--~~ii~~~~  274 (691)
T KOG2048|consen  263 AGVD--PKIIQYSL  274 (691)
T ss_pred             ccCC--CceEEEEe
Confidence            9976  55655544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.5e-24  Score=165.51  Aligned_cols=246  Identities=22%  Similarity=0.437  Sum_probs=184.7

Q ss_pred             ccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc----ceeeeeecCcccEEEEEECCC--CCEEEEeeCCCcEEEEe
Q 020798           70 TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA----TCLKTLIGHTNYVFCVNFNPQ--SNMIVSGAFDETVRIWD  143 (321)
Q Consensus        70 ~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd  143 (321)
                      .+|.+-|+++.|.+.|+.+++|+.|++++|||..+.    .+....+.|.+.|..+.|.+.  |+.+++++.|+++.+|.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            478899999999999999999999999999996443    455677899999999999764  78899999999999997


Q ss_pred             cCCC---------EEEEEEeCCCCCeeEEEEccC--CCEEEEEeCCCeEEEEeCCCCceeeee------c------cCCC
Q 020798          144 VKTG---------KCLKVLPAHSDPVTAVDFNRD--GTMIVTSSYDGLCRIWDASTGHCMKTL------I------DDEN  200 (321)
Q Consensus       144 ~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~------~------~~~~  200 (321)
                      -...         .....+......|+++.|.|.  |-.+++++.||.+|+|+......+...      .      ....
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            5211         123455566788999999995  668999999999999987553222211      1      1223


Q ss_pred             CCeEEEEEccC---CCEEEEEecC-----CeEEEEeCCCC----cEEEEEeccCCceeEEEeEEEe-cCCeEEEEeCCCC
Q 020798          201 PPVSFVKFSPN---GKFILVGTLD-----NTLRLWNYSTG----KILKTYTGHTNSKYCISSTFSV-TNGKYIVSGSEDS  267 (321)
Q Consensus       201 ~~~~~~~~~~~---g~~l~~~~~d-----~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg  267 (321)
                      .+..++.|+|.   ..+|++|+.+     +.+.||.....    ..+..+.++..++..+.+.... ..-..||+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            45667889874   4677777755     47888875432    3455667777776655433111 1235799999999


Q ss_pred             eEEEEEcccc--------------------eEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          268 CVYLWELQSR--------------------KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       268 ~i~vwd~~~~--------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                       |+||.+...                    +.+..+.+|..+|+.+.|+-.|..|++.|  .||.|++|..
T Consensus       250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG--dDG~VRLWka  317 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG--DDGCVRLWKA  317 (361)
T ss_pred             -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC--CCceeeehhh
Confidence             999998621                    23556788999999999999999999988  4699999975

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.95  E-value=3.6e-25  Score=174.77  Aligned_cols=304  Identities=19%  Similarity=0.342  Sum_probs=215.2

Q ss_pred             cceeeeeccCCcccEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCC-CCCCcccccccccccEEEEEECCCCCEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDS-TPPSPLQKFTGHEQGVSDLVFSSDSRFLV   89 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~~~~~~l~   89 (321)
                      ++.+...+. -..+|..+.|.+++. .||||+.|..|++|.+........ .....+..+..|.+.|+.+.|+|+|+.|+
T Consensus         3 ~~~~ei~wH-~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLA   81 (434)
T KOG1009|consen    3 AYPIEISWH-DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLA   81 (434)
T ss_pred             ceeeEEEec-CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeee
Confidence            344444443 246899999998876 999999999999998876443221 22334567789999999999999999999


Q ss_pred             EEeCCCcEEEEecC--------C--------cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE
Q 020798           90 SASDDKTIRLWDVP--------T--------ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL  153 (321)
Q Consensus        90 ~~~~d~~i~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  153 (321)
                      +|+.+|.+.+|-..        +        ....+.+.+|...+..++|+|+++++++++.|..+++||+..|.....+
T Consensus        82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~  161 (434)
T KOG1009|consen   82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL  161 (434)
T ss_pred             ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence            99999999999755        2        1233456789999999999999999999999999999999999999999


Q ss_pred             eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee-----cc----C---------CC----CCeEEEEEccC
Q 020798          154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL-----ID----D---------EN----PPVSFVKFSPN  211 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~----~---------~~----~~~~~~~~~~~  211 (321)
                      ..|...+..++|.|-+.++++-+.|...+.+.+...+.....     ..    +         ++    .-...++|+|+
T Consensus       162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd  241 (434)
T KOG1009|consen  162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD  241 (434)
T ss_pred             cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC
Confidence            999999999999999999988888776666665432211110     00    0         00    11234688999


Q ss_pred             CCEEEEEec----CC-----eEEEEeCCC-CcEEEEEeccCCceeEEEeE---------------EEecCCeEEEEeCCC
Q 020798          212 GKFILVGTL----DN-----TLRLWNYST-GKILKTYTGHTNSKYCISST---------------FSVTNGKYIVSGSED  266 (321)
Q Consensus       212 g~~l~~~~~----d~-----~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~d  266 (321)
                      |.++++...    .+     ..++|+-.. .++...+++...+...+.++               +..|-+..+|.++. 
T Consensus       242 G~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-  320 (434)
T KOG1009|consen  242 GSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-  320 (434)
T ss_pred             CcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-
Confidence            999887531    22     234554322 12333333333322222111               11223445666665 


Q ss_pred             CeEEEEEcccceEEEEecC-CCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          267 SCVYLWELQSRKVVQKLEG-HTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       267 g~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ..|+|||.++.+++....+ |-.+|++++|+++|..|+..|.|  |...+-..|
T Consensus       321 ~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~D--GyCS~vtfe  372 (434)
T KOG1009|consen  321 NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTD--GFCSLVTFE  372 (434)
T ss_pred             ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccC--CceEEEEEc
Confidence            5799999998877766544 88899999999999999999866  555554444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=1.7e-23  Score=172.72  Aligned_cols=266  Identities=17%  Similarity=0.213  Sum_probs=188.9

Q ss_pred             eeeeccCCcccEEEEEECCCCCEE-EEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE-e
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLL-ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA-S   92 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~-~   92 (321)
                      ..+.+.+|. .+..++|+|+|+.+ ++++.++.+.+|+.....        ....+..+. .+..+.|+|+++.++++ +
T Consensus        23 ~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~--------~~~~~~~~~-~~~~~~~~~~g~~l~~~~~   92 (300)
T TIGR03866        23 VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE--------VIGTLPSGP-DPELFALHPNGKILYIANE   92 (300)
T ss_pred             eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc--------EEEeccCCC-CccEEEECCCCCEEEEEcC
Confidence            445555554 46789999999976 567789999999875421        122233232 35678999999877654 5


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCC-cEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCE
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE-TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTM  171 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  171 (321)
                      .++.+++||+.+.+.+..+.. ...+..++++|++..++++..++ .+.+||.++++....... ......++|+|+++.
T Consensus        93 ~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~  170 (300)
T TIGR03866        93 DDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKE  170 (300)
T ss_pred             CCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCE
Confidence            689999999998776655542 23467899999999998888765 467789988776655443 234577999999998


Q ss_pred             EEEE-eCCCeEEEEeCCCCceeeeeccC------CCCCeEEEEEccCCCEEEEE-ecCCeEEEEeCCCCcEEEEEeccCC
Q 020798          172 IVTS-SYDGLCRIWDASTGHCMKTLIDD------ENPPVSFVKFSPNGKFILVG-TLDNTLRLWNYSTGKILKTYTGHTN  243 (321)
Q Consensus       172 l~~~-~~dg~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~  243 (321)
                      ++++ ..++.+++||+++++....+...      .......++|+|++++++++ ..++.+.+||+.+++.+..+... .
T Consensus       171 l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~  249 (300)
T TIGR03866       171 LWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG-Q  249 (300)
T ss_pred             EEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC-C
Confidence            7654 46899999999988765544211      01123457899999986554 45678999999988877655322 2


Q ss_pred             ceeEEEeEEEecCCeEEEEe-CCCCeEEEEEcccceEEEEecCCCCCeEEEEecC
Q 020798          244 SKYCISSTFSVTNGKYIVSG-SEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP  297 (321)
Q Consensus       244 ~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p  297 (321)
                      ....+   ...+++++|+++ ..+|.|++||+.+++.+.+++... ..++++++|
T Consensus       250 ~~~~~---~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~  300 (300)
T TIGR03866       250 RVWQL---AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR-LPWGVVVRP  300 (300)
T ss_pred             CcceE---EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc-ccceeEeCC
Confidence            33333   334788888876 568999999999999988887654 448888876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.9e-25  Score=175.63  Aligned_cols=228  Identities=21%  Similarity=0.371  Sum_probs=182.0

Q ss_pred             CEEEEEeC-CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEE
Q 020798           86 RFLVSASD-DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVD  164 (321)
Q Consensus        86 ~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  164 (321)
                      .+++++.. -..+.+|.+..........--.+.+.+++-+|+|.+++.|+..|.|++|.+.+|+.+..+..|-.+|+++.
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~  130 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK  130 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence            56665543 34788999876654443334567899999999999999988999999999999999999999999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCC--------ceeeeeccCCCCCeEEEEEccC--CCEEEEEecCCeEEEEeCCCCcE
Q 020798          165 FNRDGTMIVTSSYDGLCRIWDASTG--------HCMKTLIDDENPPVSFVKFSPN--GKFILVGTLDNTLRLWNYSTGKI  234 (321)
Q Consensus       165 ~~~~~~~l~~~~~dg~i~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~--g~~l~~~~~d~~i~i~d~~~~~~  234 (321)
                      |+-|+.+|++++.||.|.+|++..-        ........+|.-+|+.+...+.  ..++++++.|.++++||+..+.+
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L  210 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL  210 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence            9999999999999999999986321        1122334566777888877664  46789999999999999999998


Q ss_pred             EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc----------------eEEEEecCCCC--CeEEEEec
Q 020798          235 LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR----------------KVVQKLEGHTD--PVISVASH  296 (321)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------------~~~~~~~~h~~--~v~~~~~~  296 (321)
                      +..+....    .+.++...|..+.+.+|+.+|.|.+.++...                ..+..+.||.+  +|++++.+
T Consensus       211 Llti~fp~----si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais  286 (476)
T KOG0646|consen  211 LLTITFPS----SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS  286 (476)
T ss_pred             eEEEecCC----cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence            88875432    2344445577889999999999998877432                23556788988  99999999


Q ss_pred             CCCceEEEEeecCCccEEEcccc
Q 020798          297 PTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       297 p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      -||..|++|+  .||.|.|||..
T Consensus       287 ~DgtlLlSGd--~dg~VcvWdi~  307 (476)
T KOG0646|consen  287 TDGTLLLSGD--EDGKVCVWDIY  307 (476)
T ss_pred             cCccEEEeeC--CCCCEEEEecc
Confidence            9999999997  56899999974

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.3e-24  Score=183.10  Aligned_cols=286  Identities=17%  Similarity=0.296  Sum_probs=214.1

Q ss_pred             EEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-----------CCEEEEEeCC
Q 020798           26 ISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-----------SRFLVSASDD   94 (321)
Q Consensus        26 v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-----------~~~l~~~~~d   94 (321)
                      .-++.|+|....|....+|..+.+||+.+....     .....+--|...|.++..-|.           ..-+.+++.|
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv-----gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD  401 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV-----GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSD  401 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccc-----cceeeeeeccceeeeeccccccccCcccccCCccceeEecCC
Confidence            346789999999999999999999999875432     122333457777776654431           1247899999


Q ss_pred             CcEEEEecCCcc---eee----------------------------------eeecCcccEEEEEECCCCCEEEEeeCCC
Q 020798           95 KTIRLWDVPTAT---CLK----------------------------------TLIGHTNYVFCVNFNPQSNMIVSGAFDE  137 (321)
Q Consensus        95 ~~i~iwd~~~~~---~~~----------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg  137 (321)
                      ++|++||++...   ..+                                  ........+.+++++|++..|++|..-|
T Consensus       402 ~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~G  481 (1080)
T KOG1408|consen  402 GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGG  481 (1080)
T ss_pred             CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccC
Confidence            999999986521   100                                  0011234588999999999999999999


Q ss_pred             cEEEEecCCCEEEEEEeCCCCCeeEEEEccC---CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCC--
Q 020798          138 TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD---GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNG--  212 (321)
Q Consensus       138 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g--  212 (321)
                      ++++|++..-+....+..|+..|.++.|+..   .++|++++.|..|++||......+...+.+|...|+.+.|...|  
T Consensus       482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln  561 (1080)
T KOG1408|consen  482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN  561 (1080)
T ss_pred             ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence            9999999998888889999999999999852   45789999999999999976655555566778889999999877  


Q ss_pred             CEEEEEecCCeEEEEeCCCCcEEEEEeccCCc--eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC---CC
Q 020798          213 KFILVGTLDNTLRLWNYSTGKILKTYTGHTNS--KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG---HT  287 (321)
Q Consensus       213 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---h~  287 (321)
                      ..+++++.|..|.+=-.++...-..+..++..  ...+--....++..++++++.|+.|+||+++++++.+.+++   |.
T Consensus       562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e  641 (1080)
T KOG1408|consen  562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE  641 (1080)
T ss_pred             eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC
Confidence            66778888886654332222222233332221  11122223346788999999999999999999999988876   66


Q ss_pred             CCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          288 DPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       288 ~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      +....+...|.|.|||+...  |+++.++|.
T Consensus       642 G~lIKv~lDPSgiY~atScs--dktl~~~Df  670 (1080)
T KOG1408|consen  642 GDLIKVILDPSGIYLATSCS--DKTLCFVDF  670 (1080)
T ss_pred             CceEEEEECCCccEEEEeec--CCceEEEEe
Confidence            78999999999999999884  578999886

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.94  E-value=1.4e-24  Score=166.81  Aligned_cols=278  Identities=18%  Similarity=0.344  Sum_probs=201.7

Q ss_pred             EEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCC-C--c-ccccc-cccccEEEEEEC-------CCCCEEEEEeC
Q 020798           26 ISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPP-S--P-LQKFT-GHEQGVSDLVFS-------SDSRFLVSASD   93 (321)
Q Consensus        26 v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~-~--~-~~~~~-~h~~~i~~~~~~-------~~~~~l~~~~~   93 (321)
                      ...+.|||||.-|++-+.|..+.+|.+-........+. .  + ...+. .-...|...+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            34578999999999999999999998754222111000 0  0 00111 012345665553       67789999999


Q ss_pred             CCcEEEEecCCcceeeeeec--Ccc---cEEEEEECCCCCEEEEeeCCCcEEEEec-CCCEEEE---EE----eCCCCCe
Q 020798           94 DKTIRLWDVPTATCLKTLIG--HTN---YVFCVNFNPQSNMIVSGAFDETVRIWDV-KTGKCLK---VL----PAHSDPV  160 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~dg~i~~wd~-~~~~~~~---~~----~~~~~~v  160 (321)
                      +.-|.+||.-+++...++.+  |..   ...+++|+|||.+|++| ....|+++|+ +.|+...   ++    .+..+.+
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            99999999999886555443  322   35689999999999875 5689999998 5554221   11    1224668


Q ss_pred             eEEEEccCCC-EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec-CCeEEEEeCCCC-cEEEE
Q 020798          161 TAVDFNRDGT-MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL-DNTLRLWNYSTG-KILKT  237 (321)
Q Consensus       161 ~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-d~~i~i~d~~~~-~~~~~  237 (321)
                      .+++|+|... .++.+++..++-++.-....+... ...+...|+.+.|.++|+.|++|.. |..|..||++.. .++-.
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l-lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL-LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEecCCCCceee-ecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence            8999999655 788899988888887665554444 4577888999999999999999874 778999999864 34555


Q ss_pred             EeccCC-ceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc-ceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          238 YTGHTN-SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS-RKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       238 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      +..|.. ....|-+. ..+++++|++|+.||.|++||++. +..+..+..|...++.++++|.=.++|+++
T Consensus       290 L~rhv~~TNQRI~FD-ld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  290 LERHVGDTNQRILFD-LDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             hhhhccCccceEEEe-cCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence            555554 33333332 246899999999999999999988 565777778899999999999988999886

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=6.2e-27  Score=196.86  Aligned_cols=239  Identities=26%  Similarity=0.515  Sum_probs=206.2

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      +....|...|.++..-..++.+++|+.|..+.+|.+..        +..+..+.+|+.+|.++.|+++..+|++|+.+|+
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k--------p~~i~S~~~hespIeSl~f~~~E~Llaagsasgt   93 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK--------PNAITSLTGHESPIESLTFDTSERLLAAGSASGT   93 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccC--------CchhheeeccCCcceeeecCcchhhhcccccCCc
Confidence            45567999999999877889999999999999996643        2344568999999999999999999999999999


Q ss_pred             EEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEe
Q 020798           97 IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS  176 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  176 (321)
                      |++||++..+.++.+.+|...+..+.|+|-+.++++++.|+.+++||++...+...+..|...+..++|+|+|++++.++
T Consensus        94 iK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~  173 (825)
T KOG0267|consen   94 IKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG  173 (825)
T ss_pred             eeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC
Confidence            99999999999999999999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecC
Q 020798          177 YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       177 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (321)
                      .|.++++||+..++....+. .+...+..+.|+|..-+++.|+.|+++++||+++-+.+.........+   .+..+.++
T Consensus       174 ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v---~~~~fn~~  249 (825)
T KOG0267|consen  174 EDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGV---RSLAFNPD  249 (825)
T ss_pred             Ccceeeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCc---eeeeecCC
Confidence            99999999999888776653 355667888899999899999999999999999877777665543333   33444578


Q ss_pred             CeEEEEeCCCC
Q 020798          257 GKYIVSGSEDS  267 (321)
Q Consensus       257 ~~~l~~~~~dg  267 (321)
                      +..+++|.+..
T Consensus       250 ~~~~~~G~q~s  260 (825)
T KOG0267|consen  250 GKIVLSGEQIS  260 (825)
T ss_pred             ceeeecCchhh
Confidence            88888876553

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=2.6e-23  Score=168.68  Aligned_cols=299  Identities=19%  Similarity=0.319  Sum_probs=219.8

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCC-CC--Cc------------------------
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDST-PP--SP------------------------   65 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~-~~--~~------------------------   65 (321)
                      +++.+....|.++|.+++.-.+|.+|- |+.|+.|..||-.-....+.. |.  .+                        
T Consensus       277 ~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt  355 (626)
T KOG2106|consen  277 NRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT  355 (626)
T ss_pred             ceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence            445555559999999999999998665 999999999983211100000 00  00                        


Q ss_pred             -----ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEE
Q 020798           66 -----LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVR  140 (321)
Q Consensus        66 -----~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  140 (321)
                           .....+|.+....++.+|+.+.+++++.|+.+++|+  ..+++.+.. -..++.|+.|+|.| .++.|...|...
T Consensus       356 ~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~  431 (626)
T KOG2106|consen  356 LENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWF  431 (626)
T ss_pred             ecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEE
Confidence                 112356888889999999999999999999999999  444333322 34667899999999 999999999999


Q ss_pred             EEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCC-CceeeeeccCCCCCeEEEEEccCCCEEEEEe
Q 020798          141 IWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST-GHCMKTLIDDENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       141 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      +.|.++...+..-.. ..+++.++|+|+|.+|+.|+.|+.|++|.+.. +.........+..++..+.|++|++++.+-+
T Consensus       432 V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S  510 (626)
T KOG2106|consen  432 VLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS  510 (626)
T ss_pred             EEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence            999988665555444 88999999999999999999999999998853 4444444444558899999999999999999


Q ss_pred             cCCeEEEEeCCCCcEEEEEe---ccCCc------------eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc---eEEE
Q 020798          220 LDNTLRLWNYSTGKILKTYT---GHTNS------------KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR---KVVQ  281 (321)
Q Consensus       220 ~d~~i~i~d~~~~~~~~~~~---~~~~~------------~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~  281 (321)
                      .|-.|..|.....+.+...+   -.+..            ..-+..+........+|+|...|.|++|...-.   ...+
T Consensus       511 ~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~h  590 (626)
T KOG2106|consen  511 GDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSH  590 (626)
T ss_pred             CceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccce
Confidence            99999999543322222211   00000            000111122245678999999999999997543   3456


Q ss_pred             EecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          282 KLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       282 ~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ++.+|.+-|.+++|..+..+|++.+  .|..|..|+++
T Consensus       591 e~~ghs~~vt~V~Fl~~d~~li~tg--~D~Si~qW~lv  626 (626)
T KOG2106|consen  591 EYGGHSSHVTNVAFLCKDSHLISTG--KDTSIMQWRLV  626 (626)
T ss_pred             eeccccceeEEEEEeeCCceEEecC--CCceEEEEEeC
Confidence            7889999999999999888888877  45789999863

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.5e-24  Score=185.73  Aligned_cols=244  Identities=21%  Similarity=0.392  Sum_probs=196.3

Q ss_pred             ccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc-ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE
Q 020798           70 TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA-TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK  148 (321)
Q Consensus        70 ~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  148 (321)
                      ..|..+.+.++|.|+|++|++++.||.|++|+.... +....+..+...+.+++..  .+.|++|+.+++|.+|.+.+++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            368899999999999999999999999999987655 3333343377778877765  4589999999999999998876


Q ss_pred             EEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 020798          149 CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN  228 (321)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d  228 (321)
                      .-..+....-++..++|+.+|++++.|+.|-.|++-+.........+ ..+..+|.++.|+|.+++|++.+.||.|++||
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-cccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence            55455555678999999999999999999999999998766544443 46778899999999999999999999999999


Q ss_pred             CCCCcEEEEEeccC------CceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC--CCCCeEEEEecCCCc
Q 020798          229 YSTGKILKTYTGHT------NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG--HTDPVISVASHPTEN  300 (321)
Q Consensus       229 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~  300 (321)
                      +.++.+...+.+-.      ....+....| .|++..++....|+.|.+|+.........+..  +...+..++|+|.|.
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW-~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~  245 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRICTRLAW-HPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK  245 (933)
T ss_pred             cccchhhhhcccCCccccccccceeeeeee-cCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence            99987766664321      1222333344 46666777788899999999998887777654  444589999999999


Q ss_pred             eEEEEeecCCccEEEcccc
Q 020798          301 IIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       301 ~l~s~~~d~~~~i~iw~~~  319 (321)
                      |||+++.|  |.|.|||.+
T Consensus       246 YiAAs~~~--g~I~vWnv~  262 (933)
T KOG1274|consen  246 YIAASTLD--GQILVWNVD  262 (933)
T ss_pred             EEeeeccC--CcEEEEecc
Confidence            99999865  789999987

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.94  E-value=9.7e-25  Score=176.64  Aligned_cols=265  Identities=17%  Similarity=0.265  Sum_probs=206.7

Q ss_pred             cEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 020798           25 AISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP  103 (321)
Q Consensus        25 ~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  103 (321)
                      ++.++.|+.... .+++.+.|..+++|...+..    .....+....+.  .-.|++......++++|+..+.|+|||++
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~----~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~  109 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT----PEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR  109 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCC----Cccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH
Confidence            489999998774 34666778899998654321    111112222332  23445555555899999999999999999


Q ss_pred             CcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC-CCCeeEEEEccCCCE-EEEEeCCCeE
Q 020798          104 TATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH-SDPVTAVDFNRDGTM-IVTSSYDGLC  181 (321)
Q Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~dg~i  181 (321)
                      ...+.+.+.+|...|+++.++....+|++++..|.|.+..+.++.....+... ...+.-+.|+|..+. |.+++.+|.|
T Consensus       110 ~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V  189 (673)
T KOG4378|consen  110 AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV  189 (673)
T ss_pred             HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence            88788888999999999999999999999999999999999988776666544 345668999998774 5678999999


Q ss_pred             EEEeCCCCceeeeeccCCCCCeEEEEEccCC-CEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEE
Q 020798          182 RIWDASTGHCMKTLIDDENPPVSFVKFSPNG-KFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYI  260 (321)
Q Consensus       182 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (321)
                      .+||.....+...+...|..+...++|+|.. .+|++.+.|..|.+||.+..+....+.-.. +   ++...+.++|.+|
T Consensus       190 tlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~-P---lstvaf~~~G~~L  265 (673)
T KOG4378|consen  190 TLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH-P---LSTVAFSECGTYL  265 (673)
T ss_pred             EEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC-C---cceeeecCCceEE
Confidence            9999987777777777788888899999954 556778999999999999777666654322 2   3344456899999


Q ss_pred             EEeCCCCeEEEEEcccc-eEEEEecCCCCCeEEEEecCCC
Q 020798          261 VSGSEDSCVYLWELQSR-KVVQKLEGHTDPVISVASHPTE  299 (321)
Q Consensus       261 ~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~  299 (321)
                      ++|+..|.|..||++.. .++..+..|...|++++|-|..
T Consensus       266 ~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  266 CAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            99999999999999875 4678888999999999998764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=2e-24  Score=181.05  Aligned_cols=299  Identities=19%  Similarity=0.333  Sum_probs=219.9

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      ......||.++|..++|+|.|++|++.|.|.+-+++.......    ....+.+.+.|.-.+.|++|-+..-.+++|...
T Consensus       353 ~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~----~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE  428 (764)
T KOG1063|consen  353 QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ----EWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE  428 (764)
T ss_pred             eccccccccccceeeeecCCCCEEEEeccccceeeeccccccc----ceeeecccccccccceeeehccCCceeeecccc
Confidence            3344679999999999999999999999999999986552211    123344556688889999999865678888888


Q ss_pred             CcEEEEecCC-------------------------------------------cc-------------------------
Q 020798           95 KTIRLWDVPT-------------------------------------------AT-------------------------  106 (321)
Q Consensus        95 ~~i~iwd~~~-------------------------------------------~~-------------------------  106 (321)
                      ..+|+|+.+.                                           +.                         
T Consensus       429 KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq  508 (764)
T KOG1063|consen  429 KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ  508 (764)
T ss_pred             eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence            8889987521                                           00                         


Q ss_pred             --------eeeeeecCcccEEEEEECCCCCEEEEeeCCC-----cEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEE
Q 020798          107 --------CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE-----TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV  173 (321)
Q Consensus       107 --------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  173 (321)
                              .++.+.||...|++++.+|+++++++++...     .|++|+..+-...+.++.|.-.|+.++|+||+++|+
T Consensus       509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LL  588 (764)
T KOG1063|consen  509 LQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLL  588 (764)
T ss_pred             HHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEE
Confidence                    0112458999999999999999999987643     589999888777788999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCce---eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC--cEEEEE--eccCCcee
Q 020798          174 TSSYDGLCRIWDASTGHC---MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG--KILKTY--TGHTNSKY  246 (321)
Q Consensus       174 ~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~--~~~~~~--~~~~~~~~  246 (321)
                      +.+.|.++.+|.......   .......|...|..+.|+|++.++++++.|.++++|...+.  +.+..+  ..+...+.
T Consensus       589 svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVT  668 (764)
T KOG1063|consen  589 SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVT  668 (764)
T ss_pred             EeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCcee
Confidence            999999999998643211   11123456667888999999999999999999999998776  333332  12233333


Q ss_pred             EEEeEE--EecCCeEEEEeCCCCeEEEEEcccc---------eEEEE---ecCCCCCeEEEEecCC----------CceE
Q 020798          247 CISSTF--SVTNGKYIVSGSEDSCVYLWELQSR---------KVVQK---LEGHTDPVISVASHPT----------ENII  302 (321)
Q Consensus       247 ~~~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~---~~~h~~~v~~~~~~p~----------~~~l  302 (321)
                      .+....  ....+..++.|-..|.|.+|.....         ....+   ..+|...|+.+.|.|.          ...|
T Consensus       669 Av~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~l  748 (764)
T KOG1063|consen  669 AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNL  748 (764)
T ss_pred             eEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEE
Confidence            333322  1223447899999999999986411         11111   2346778999999976          2456


Q ss_pred             EEEeecCCccEEEcccc
Q 020798          303 ASGALDNDRTVKIWTQE  319 (321)
Q Consensus       303 ~s~~~d~~~~i~iw~~~  319 (321)
                      ++|+.|  ..++|++..
T Consensus       749 a~~g~D--~~vri~nv~  763 (764)
T KOG1063|consen  749 AVGGDD--ESVRIFNVD  763 (764)
T ss_pred             eeeccc--ceeEEeecc
Confidence            888855  579998865

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=8.7e-23  Score=165.65  Aligned_cols=278  Identities=17%  Similarity=0.287  Sum_probs=208.0

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccc-cccEEEEEECCCCCEEEEEeCCCcEEEE
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH-EQGVSDLVFSSDSRFLVSASDDKTIRLW  100 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~l~~~~~d~~i~iw  100 (321)
                      .++.|...+|+|.+.-|+.....+.+.+|++.....     .+....++++ +.-|.|+.|.++|. +++|..+|.|.||
T Consensus       199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l-----~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw  272 (626)
T KOG2106|consen  199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL-----VKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIW  272 (626)
T ss_pred             ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce-----EEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEE
Confidence            456788899999776554444578999998764321     1112223322 25689999999997 6789999999999


Q ss_pred             ecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE------------E-------------------
Q 020798          101 DVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK------------C-------------------  149 (321)
Q Consensus       101 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~------------~-------------------  149 (321)
                      +..+.+..+...+|.+.|.+++...+|.. ++|+.|..|..||-.=.+            .                   
T Consensus       273 ~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i  351 (626)
T KOG2106|consen  273 SKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI  351 (626)
T ss_pred             eCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence            99888877777799999999999998864 559999999999821000            0                   


Q ss_pred             ---------EEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec
Q 020798          150 ---------LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL  220 (321)
Q Consensus       150 ---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  220 (321)
                               ......|....+.++.+|+.+.+++++.|+.+++|+  ..+..-..  ....+..++.|+|.| .+++|..
T Consensus       352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~--~~~d~~~~~~fhpsg-~va~Gt~  426 (626)
T KOG2106|consen  352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK--IIEDPAECADFHPSG-VVAVGTA  426 (626)
T ss_pred             EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE--EecCceeEeeccCcc-eEEEeec
Confidence                     011234667788899999999999999999999999  33332222  224567789999999 8999999


Q ss_pred             CCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc-eEEEEe-cCCCCCeEEEEecCC
Q 020798          221 DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR-KVVQKL-EGHTDPVISVASHPT  298 (321)
Q Consensus       221 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~-~~h~~~v~~~~~~p~  298 (321)
                      .|...+.|..+...+..-.. ..+   ++...+.++|.+||.|+.|+.|++|.+... +...+. +.|.++|+.+.|++|
T Consensus       427 ~G~w~V~d~e~~~lv~~~~d-~~~---ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D  502 (626)
T KOG2106|consen  427 TGRWFVLDTETQDLVTIHTD-NEQ---LSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD  502 (626)
T ss_pred             cceEEEEecccceeEEEEec-CCc---eEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence            99999999998766665544 333   445556689999999999999999998654 333333 224489999999999


Q ss_pred             CceEEEEeecCCccEEEcc
Q 020798          299 ENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       299 ~~~l~s~~~d~~~~i~iw~  317 (321)
                      +++|.+-+.|  -.|..|.
T Consensus       503 s~~~~~~S~d--~eiLyW~  519 (626)
T KOG2106|consen  503 SQFLVSNSGD--YEILYWK  519 (626)
T ss_pred             CceEEeccCc--eEEEEEc
Confidence            9999998854  5688883

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.5e-24  Score=179.13  Aligned_cols=287  Identities=19%  Similarity=0.291  Sum_probs=212.3

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCC--EEEEE
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR--FLVSA   91 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~--~l~~~   91 (321)
                      .+...+.||.+.|.++...|.|.+||+|+.||++++|.+.+.        ..+..+. -...|.+++|+|.++  .||++
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--------Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA  461 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--------RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA  461 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--------eEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence            345567899999999999999999999999999999977542        2333332 245799999999775  34443


Q ss_pred             eCCCcEEEEec---------------------------------CCcc----eeeeeecCcccEEEEEECCCCCEEEEee
Q 020798           92 SDDKTIRLWDV---------------------------------PTAT----CLKTLIGHTNYVFCVNFNPQSNMIVSGA  134 (321)
Q Consensus        92 ~~d~~i~iwd~---------------------------------~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~  134 (321)
                      -. ..+.|-+.                                 ....    -+.....|...|..+.|+..|.+|++..
T Consensus       462 ~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~  540 (733)
T KOG0650|consen  462 VG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM  540 (733)
T ss_pred             ec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence            32 22333332                                 1100    0123446788899999999999999875


Q ss_pred             CC---CcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC
Q 020798          135 FD---ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN  211 (321)
Q Consensus       135 ~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (321)
                      .+   ..|.++++........+....+.+..+.|+|...+|++++.. .|++||+..+..++.+... ...+..++++|.
T Consensus       541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg-~kwiS~msihp~  618 (733)
T KOG0650|consen  541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTG-SKWISSMSIHPN  618 (733)
T ss_pred             cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcC-CeeeeeeeecCC
Confidence            43   468888987766555565566789999999999888888764 6899999887766665543 345888999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCC-cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc-------cc--eEEE
Q 020798          212 GKFILVGTLDNTLRLWNYSTG-KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ-------SR--KVVQ  281 (321)
Q Consensus       212 g~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-------~~--~~~~  281 (321)
                      |..|++++.|+.+..||+.-. ++.+.+.-|......+   .+...-.++++|+.||++.||.-.       +.  ..++
T Consensus       619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~V---a~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK  695 (733)
T KOG0650|consen  619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSV---AFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLK  695 (733)
T ss_pred             CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhh---hhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeee
Confidence            999999999999999998744 4555665565543333   233556789999999999998531       11  3467


Q ss_pred             EecCCCCC----eEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          282 KLEGHTDP----VISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       282 ~~~~h~~~----v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      .+.+|...    |.++.|||...+|.+++  .||+|++|.
T Consensus       696 ~L~gH~~~~~~gVLd~~wHP~qpWLfsAG--Ad~tirlfT  733 (733)
T KOG0650|consen  696 RLRGHEKTNDLGVLDTIWHPRQPWLFSAG--ADGTIRLFT  733 (733)
T ss_pred             eccCceeecccceEeecccCCCceEEecC--CCceEEeeC
Confidence            88899765    99999999999999998  458999995

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.8e-23  Score=159.74  Aligned_cols=248  Identities=22%  Similarity=0.398  Sum_probs=182.8

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC--CCCEEEEEeCCCcE
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS--DSRFLVSASDDKTI   97 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~l~~~~~d~~i   97 (321)
                      .+|..-|.++.|.+-|+.+|+|+.|+.++|||...    ...+.......+.|.+.|..+.|.+  -|+.+|+++.|+++
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~----~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS----DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccC----CCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            68999999999999999999999999999998643    2233344556788999999999975  48999999999999


Q ss_pred             EEEecCCc---------ceeeeeecCcccEEEEEECCC--CCEEEEeeCCCcEEEEecCCCEEE------EEEe------
Q 020798           98 RLWDVPTA---------TCLKTLIGHTNYVFCVNFNPQ--SNMIVSGAFDETVRIWDVKTGKCL------KVLP------  154 (321)
Q Consensus        98 ~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~------~~~~------  154 (321)
                      .||.-...         .....+......|..+.|.|.  |-.+++++.||.+|+|+.-..-..      ..++      
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            99974211         112344556678999999985  678999999999999986433211      1222      


Q ss_pred             -CCCCCeeEEEEccC---CCEEEEEeCC-----CeEEEEeCCCCc----eeeeeccCCCCCeEEEEEccC----CCEEEE
Q 020798          155 -AHSDPVTAVDFNRD---GTMIVTSSYD-----GLCRIWDASTGH----CMKTLIDDENPPVSFVKFSPN----GKFILV  217 (321)
Q Consensus       155 -~~~~~v~~~~~~~~---~~~l~~~~~d-----g~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~----g~~l~~  217 (321)
                       .+..+..++.|+|.   ...|++|+.+     +.+.+|....+.    .+.++ ..+..+|..++|.|+    -..|++
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L-~d~~dpI~di~wAPn~Gr~y~~lAv  244 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL-PDHTDPIRDISWAPNIGRSYHLLAV  244 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc-CCCCCcceeeeeccccCCceeeEEE
Confidence             35567889999975   3467777665     367788654322    12222 366778999999995    246889


Q ss_pred             EecCCeEEEEeCCCC--------------------cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          218 GTLDNTLRLWNYSTG--------------------KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       218 ~~~d~~i~i~d~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      ++.|| |+||.++..                    +.+..+..|...++.+...   ..|..|++.+.||+||+|...-
T Consensus       245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN---mtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN---MTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe---eeeeEEeecCCCceeeehhhhh
Confidence            99999 999998631                    2344556677666655432   4689999999999999998643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.5e-24  Score=164.98  Aligned_cols=237  Identities=16%  Similarity=0.286  Sum_probs=176.5

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeC
Q 020798           76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPA  155 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  155 (321)
                      -.++.|++.|.+||.|+.||.|.|||+.+....+.+.+|..+|.+++|+++|++|++++.|..|.+||+..|.+.+.+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            6789999999999999999999999999998888889999999999999999999999999999999999999888775 


Q ss_pred             CCCCeeEEEEccCCC-EEEEEeCCCeEEEEeCCCCceeeeecc-C----CCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          156 HSDPVTAVDFNRDGT-MIVTSSYDGLCRIWDASTGHCMKTLID-D----ENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       156 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~-~----~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                      ...+|+.+.|+|... .++++-.+..-.+-++..+.  ...+. .    .+.......|++.|+++++|...|.+.++|.
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence            467999999999654 33333333334444444321  11111 1    1112233458999999999999999999999


Q ss_pred             CCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc-------e--EEEEecCC--CCCeEEEEecCC
Q 020798          230 STGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR-------K--VVQKLEGH--TDPVISVASHPT  298 (321)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~--~~~~~~~h--~~~v~~~~~~p~  298 (321)
                      .+.+.+..+....  ...+.....+..|++|+..++|+.||.|+++.-       +  ..+++...  .-+=.++.|+.+
T Consensus       183 ~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d  260 (405)
T KOG1273|consen  183 ETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD  260 (405)
T ss_pred             chheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence            9998888876543  122333334467999999999999999998631       1  11122111  112357889999


Q ss_pred             CceEEEEeecCCccEEEccc
Q 020798          299 ENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       299 ~~~l~s~~~d~~~~i~iw~~  318 (321)
                      |.+++.|+. ..-.++||-.
T Consensus       261 geYv~a~s~-~aHaLYIWE~  279 (405)
T KOG1273|consen  261 GEYVCAGSA-RAHALYIWEK  279 (405)
T ss_pred             ccEEEeccc-cceeEEEEec
Confidence            999998874 3457888864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.3e-24  Score=171.95  Aligned_cols=239  Identities=18%  Similarity=0.296  Sum_probs=194.4

Q ss_pred             cccEEEEEECCCCCEEEEEeCCCcEEEEecCCc--ceeeeeecCcccEEEEEECCCCC-EEEEeeCCCcEEEEecCCCEE
Q 020798           73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA--TCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGKC  149 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~  149 (321)
                      .++|+++.|+|....|++++.|+.++||.++..  ..+.++.-...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            468999999999999999999999999988654  34555555677899999999998 889999999999999988764


Q ss_pred             EEEE--eCCC-CCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 020798          150 LKVL--PAHS-DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL  226 (321)
Q Consensus       150 ~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i  226 (321)
                      .+.-  .++. ..+.....++++++++..+..|.|.+....+++.+..+.  ....+..+.|+.+++.|++++.+|.|.+
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            4322  2222 346678889999999999999999999888877665553  3456888999999999999999999999


Q ss_pred             EeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc------ceEEEEecCCCCCeEEEEecCCCc
Q 020798          227 WNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS------RKVVQKLEGHTDPVISVASHPTEN  300 (321)
Q Consensus       227 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~h~~~v~~~~~~p~~~  300 (321)
                      ||++....++.+.... .+.. .......++.+||+|+..|.|.|||..+      +++++.+......|+++.|+|+..
T Consensus       371 ~nl~~~~~~~rf~D~G-~v~g-ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q  448 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDG-SVHG-TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ  448 (514)
T ss_pred             EecCCcceEEEEeecC-ccce-eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence            9999999998886532 2222 2333457899999999999999999643      466777777788999999999999


Q ss_pred             eEEEEeecCCccEEE
Q 020798          301 IIASGALDNDRTVKI  315 (321)
Q Consensus       301 ~l~s~~~d~~~~i~i  315 (321)
                      +||-+|.-.+..+++
T Consensus       449 iLAiaS~~~knalrL  463 (514)
T KOG2055|consen  449 ILAIASRVKKNALRL  463 (514)
T ss_pred             hhhhhhhccccceEE
Confidence            999998766667766

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.3e-24  Score=172.00  Aligned_cols=243  Identities=19%  Similarity=0.304  Sum_probs=175.9

Q ss_pred             CCCEEEEecCCceEEEeeccccCCCCCCC--C-----------CcccccccccccEEEEEECCC-CCEEEEEeCCCcEEE
Q 020798           34 DGRLLASSSADKTLLTYSLSSISNSDSTP--P-----------SPLQKFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRL   99 (321)
Q Consensus        34 ~g~~l~~~~~d~~v~~~~~~~~~~~~~~~--~-----------~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~d~~i~i   99 (321)
                      .|+|+|.|+.|..|.|||+.-.......-  .           ..-..-.+|+..|..++|+.. .+.||+|+.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            36899999999999999986432111000  0           000112368888999999876 457899999999999


Q ss_pred             EecCCcceeeeeecCcccEEEEEECCC-CCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC-EEEEEeC
Q 020798          100 WDVPTATCLKTLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT-MIVTSSY  177 (321)
Q Consensus       100 wd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~  177 (321)
                      ||+.++++..++..|...|.++.|+|. ...|++|+.|+++.+.|.+........-...+.|..++|.|... .++++..
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            999999999999999999999999996 56799999999999999985332222222356789999999765 5677889


Q ss_pred             CCeEEEEeCCCC-ceeeeeccCCCCCeEEEEEccCC-CEEEEEecCCeEEEEeCCCCcE--EEEEeccCCceeEEEeEEE
Q 020798          178 DGLCRIWDASTG-HCMKTLIDDENPPVSFVKFSPNG-KFILVGTLDNTLRLWNYSTGKI--LKTYTGHTNSKYCISSTFS  253 (321)
Q Consensus       178 dg~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~  253 (321)
                      ||+++-+|+|+. +++.++ ..|..+|..+.+++.- .++++++.|+.+++|++.....  +.......+...|  +.+.
T Consensus       351 dG~v~~~D~R~~~~~vwt~-~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c--~~~~  427 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGKPVWTL-KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC--FALD  427 (463)
T ss_pred             CceEEeeecCCCCCceeEE-EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceee--cccC
Confidence            999999999976 555444 4667789999988754 4577889999999999864332  2211111111111  1122


Q ss_pred             ecCCeEEEEeCCCCeEEEEEcccceE
Q 020798          254 VTNGKYIVSGSEDSCVYLWELQSRKV  279 (321)
Q Consensus       254 ~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (321)
                      +.....++.|+..+.++|||+.+...
T Consensus       428 ~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  428 PDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             CCcceEEEecCccceEEEeecccChh
Confidence            33456788999999999999977644

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=6.6e-24  Score=166.23  Aligned_cols=218  Identities=25%  Similarity=0.414  Sum_probs=172.8

Q ss_pred             cceeeeeccCCcccEEEEEECCC--CCEEEEecCCceEEEeeccccCCCC--------CCCCCcccccccccccEEEEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHD--GRLLASSSADKTLLTYSLSSISNSD--------STPPSPLQKFTGHEQGVSDLVF   81 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~--g~~l~~~~~d~~v~~~~~~~~~~~~--------~~~~~~~~~~~~h~~~i~~~~~   81 (321)
                      ..++....-.|.+.+..++-++-  ..+.|+.+..|.|.+|++.......        .....|+.++.+|...=+.++|
T Consensus       140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW  219 (440)
T KOG0302|consen  140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW  219 (440)
T ss_pred             cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec
Confidence            34455556678888888887764  4678899999999999987643221        1334677888999999999999


Q ss_pred             CCCC-CEEEEEeCCCcEEEEecCCccee---eeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCC---EEEEEE
Q 020798           82 SSDS-RFLVSASDDKTIRLWDVPTATCL---KTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTG---KCLKVL  153 (321)
Q Consensus        82 ~~~~-~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~---~~~~~~  153 (321)
                      ||-. -.|++|.--+.|++|...++...   ..+.+|+..|-.++|+|.. +.|++|+.||.|++||++.+   .++.+ 
T Consensus       220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-  298 (440)
T KOG0302|consen  220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-  298 (440)
T ss_pred             ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-
Confidence            9932 23777777788999998876532   3467899999999999964 67999999999999999987   34443 


Q ss_pred             eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCc---eeeeeccCCCCCeEEEEEccC-CCEEEEEecCCeEEEEeC
Q 020798          154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH---CMKTLIDDENPPVSFVKFSPN-GKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~-g~~l~~~~~d~~i~i~d~  229 (321)
                      +.|.+.|..+.|+....+|++|+.||++++||++..+   ++.. +..|..+|+++.|+|. ...|++++.|.+|.+||+
T Consensus       299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~-fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT-FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee-EEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence            7899999999999988899999999999999998643   3333 3457788999999995 456778889999999998


Q ss_pred             CC
Q 020798          230 ST  231 (321)
Q Consensus       230 ~~  231 (321)
                      ..
T Consensus       378 sv  379 (440)
T KOG0302|consen  378 SV  379 (440)
T ss_pred             ec
Confidence            53

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=2.9e-23  Score=162.66  Aligned_cols=242  Identities=21%  Similarity=0.408  Sum_probs=184.0

Q ss_pred             ccccccEEEEEECCCCC--EEEEEeCCCcEEEEecCC----------------cceeeeeecCcccEEEEEECCC-CCEE
Q 020798           70 TGHEQGVSDLVFSSDSR--FLVSASDDKTIRLWDVPT----------------ATCLKTLIGHTNYVFCVNFNPQ-SNMI  130 (321)
Q Consensus        70 ~~h~~~i~~~~~~~~~~--~l~~~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~~l  130 (321)
                      ..|.+.++.+.-++-++  +.++=+..|.|+||++..                .+++.++.+|...-+.++|+|- ...|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            46778888888877653  455557889999999742                2345677889999999999993 3458


Q ss_pred             EEeeCCCcEEEEecCCCEEE---EEEeCCCCCeeEEEEccCC-CEEEEEeCCCeEEEEeCCCCc-eeeeeccCCCCCeEE
Q 020798          131 VSGAFDETVRIWDVKTGKCL---KVLPAHSDPVTAVDFNRDG-TMIVTSSYDGLCRIWDASTGH-CMKTLIDDENPPVSF  205 (321)
Q Consensus       131 ~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~  205 (321)
                      ++|..-+.|++|...++.-.   ..+..|...|..+.|+|.. ..|++|+-||+|+|||+|.+. ........++..|+.
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV  307 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV  307 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence            88888899999998876422   2355799999999999975 478999999999999999873 222223567788999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCC---CcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceE---
Q 020798          206 VKFSPNGKFILVGTLDNTLRLWNYST---GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV---  279 (321)
Q Consensus       206 ~~~~~~g~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---  279 (321)
                      +.|+....+|++|+.||+++|||++.   ++++..++-|..+++++.  |.+.+...|++++.|.+|.+||+.-..-   
T Consensus       308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsie--W~p~e~s~iaasg~D~QitiWDlsvE~D~ee  385 (440)
T KOG0302|consen  308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIE--WHPHEDSVIAASGEDNQITIWDLSVEADEEE  385 (440)
T ss_pred             EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEE--eccccCceEEeccCCCcEEEEEeeccCChhh
Confidence            99999988999999999999999875   578899999998887764  4556778899999999999999843110   


Q ss_pred             --------E-----EEecCC--CCCeEEEEecCCC-ceEEEEeecCCccEEEc
Q 020798          280 --------V-----QKLEGH--TDPVISVASHPTE-NIIASGALDNDRTVKIW  316 (321)
Q Consensus       280 --------~-----~~~~~h--~~~v~~~~~~p~~-~~l~s~~~d~~~~i~iw  316 (321)
                              +     +-+--|  ...|..+.||+.- .+|++.+.|+   +.||
T Consensus       386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG---fnVf  435 (440)
T KOG0302|consen  386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG---FNVF  435 (440)
T ss_pred             hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc---eeEE
Confidence                    0     011123  3468899999874 4677766553   4454

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=8.3e-23  Score=157.45  Aligned_cols=297  Identities=24%  Similarity=0.428  Sum_probs=209.7

Q ss_pred             Ccceeeee-ccCCcccEEEEEECC-----CCCEEEEecCCceEEEeeccccCCCCCCCCCccccc--ccccccEEEEEEC
Q 020798           11 RPYTLTQT-LNGHLRAISSVKFSH-----DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF--TGHEQGVSDLVFS   82 (321)
Q Consensus        11 ~~~~~~~~-~~~h~~~v~~~~~s~-----~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~~~~~   82 (321)
                      ++|..... .+.|..+|..++|++     +-..+|+.+ ...+.+|....-.     ....++.+  ..|....+.++|+
T Consensus        25 ~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~-----~ir~lq~y~D~d~~Esfytcsw~   98 (385)
T KOG1034|consen   25 RSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDG-----GIRLLQSYADEDHDESFYTCSWS   98 (385)
T ss_pred             cceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcc-----ceeeeeeccCCCCCcceEEEEEE
Confidence            45665544 467889999999984     234566665 4566677654311     00111111  2366778888887


Q ss_pred             CC----CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEEE---e
Q 020798           83 SD----SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVL---P  154 (321)
Q Consensus        83 ~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~---~  154 (321)
                      -+    ..++++|+.-|.|+|.|+.++++...+.+|...|..+.+.|+. +++++++.|..|++|++++..++..+   .
T Consensus        99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e  178 (385)
T KOG1034|consen   99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE  178 (385)
T ss_pred             ecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence            43    3588999999999999999999999999999999999999975 67899999999999999999998876   5


Q ss_pred             CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec------cC---------------------CCCCeEEEE
Q 020798          155 AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI------DD---------------------ENPPVSFVK  207 (321)
Q Consensus       155 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~---------------------~~~~~~~~~  207 (321)
                      +|.+.|.++.|++++.++++++.|..+++|++...+....+.      ..                     |...|.++.
T Consensus       179 gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr  258 (385)
T KOG1034|consen  179 GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR  258 (385)
T ss_pred             cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence            789999999999999999999999999999997432211110      00                     001111111


Q ss_pred             EccCCCEEEEEecCCeEEEEeCC-CCc-------------EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEE
Q 020798          208 FSPNGKFILVGTLDNTLRLWNYS-TGK-------------ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       208 ~~~~g~~l~~~~~d~~i~i~d~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd  273 (321)
                      |  -|+++++-+-++.|..|... -.+             .+..+.-..-..+.+.+.+. +-++.||.|.+.|.|.+||
T Consensus       259 w--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d-~~~~~la~gnq~g~v~vwd  335 (385)
T KOG1034|consen  259 W--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD-PWQKMLALGNQSGKVYVWD  335 (385)
T ss_pred             H--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec-HHHHHHhhccCCCcEEEEE
Confidence            2  15678887888899999862 111             12222222233444444333 4578899999999999999


Q ss_pred             cccceEE--EEecC--CCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          274 LQSRKVV--QKLEG--HTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       274 ~~~~~~~--~~~~~--h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      ++..+..  .++..  -...|+..+|+-|+..|+...  +|++|--||-
T Consensus       336 L~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc--dd~~Vwrwdr  382 (385)
T KOG1034|consen  336 LDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC--DDGTVWRWDR  382 (385)
T ss_pred             CCCCCCccCceEEeccccceeeeeeecccCcEEEEEe--CCCcEEEEEe
Confidence            9876542  22221  135799999999999999887  4578887774

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.5e-23  Score=167.45  Aligned_cols=230  Identities=22%  Similarity=0.399  Sum_probs=175.2

Q ss_pred             CCCEEEEEeCCCcEEEEecCCccee---------------------eeeecCcccEEEEEECCC-CCEEEEeeCCCcEEE
Q 020798           84 DSRFLVSASDDKTIRLWDVPTATCL---------------------KTLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRI  141 (321)
Q Consensus        84 ~~~~l~~~~~d~~i~iwd~~~~~~~---------------------~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~  141 (321)
                      .|+++|.|+.|..|.|||+.-...+                     ....+|+..|..++|+.. .+.|++|+.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            3679999999999999998532110                     012368888888888875 357999999999999


Q ss_pred             EecCCCEEEEEEeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCC-EEEEEe
Q 020798          142 WDVKTGKCLKVLPAHSDPVTAVDFNRD-GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK-FILVGT  219 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~  219 (321)
                      ||+.++++...+..|...|.+++|+|. ...|++|+.|+++.+.|.|......... .....|..++|+|... .+++++
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEec
Confidence            999999999999999999999999996 4578999999999999998533222111 2245688899999654 566778


Q ss_pred             cCCeEEEEeCCCC-cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCC---CCCeEEEEe
Q 020798          220 LDNTLRLWNYSTG-KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGH---TDPVISVAS  295 (321)
Q Consensus       220 ~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~~  295 (321)
                      .||.++-+|++.. +++.+++.|...+.+++..  .....++++++.|+.|++|++.....- ....|   -+...|.++
T Consensus       350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n--~~~p~~l~t~s~d~~Vklw~~~~~~~~-~v~~~~~~~~rl~c~~~  426 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVN--IQTPGLLSTASTDKVVKLWKFDVDSPK-SVKEHSFKLGRLHCFAL  426 (463)
T ss_pred             CCceEEeeecCCCCCceeEEEeccCCcceEEec--CCCCcceeeccccceEEEEeecCCCCc-ccccccccccceeeccc
Confidence            8999999999875 8999999999987776543  345668999999999999998643321 11122   234677788


Q ss_pred             cCCCc-eEEEEeecCCccEEEcccc
Q 020798          296 HPTEN-IIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       296 ~p~~~-~l~s~~~d~~~~i~iw~~~  319 (321)
                      .|+-. .+|.|+  ..+.+++||..
T Consensus       427 ~~~~a~~la~GG--~k~~~~vwd~~  449 (463)
T KOG0270|consen  427 DPDVAFTLAFGG--EKAVLRVWDIF  449 (463)
T ss_pred             CCCcceEEEecC--ccceEEEeecc
Confidence            88864 566666  34689999974

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.92  E-value=6.8e-23  Score=171.73  Aligned_cols=273  Identities=22%  Similarity=0.407  Sum_probs=204.0

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT  104 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  104 (321)
                      .|..++|.|||..|+.+. +..+.+||..+        ...++++++|++.|++++|+.||+.+++|+.|..|.+|+-.-
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~nd--------G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSD--------GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL   84 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCC--------cccccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence            899999999999887765 45677887653        346788999999999999999999999999999999998532


Q ss_pred             cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 020798          105 ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW  184 (321)
Q Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  184 (321)
                      ...+  -..|++.|.|+.|+|-...|++|+-. ..-+|...... +... .....+.+++|..||.+++.|-.+|+|.+-
T Consensus        85 EG~L--kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiR  159 (1081)
T KOG1538|consen   85 EGIL--KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIR  159 (1081)
T ss_pred             ccee--eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhh-hhheeEEEeeecCCCcEEEEeccCceEEee
Confidence            2222  23599999999999999999998753 35678654332 2111 124568899999999999999999999987


Q ss_pred             eCCCCceeeee-ccCCCCCeEEEEEccCC-----CEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe
Q 020798          185 DASTGHCMKTL-IDDENPPVSFVKFSPNG-----KFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK  258 (321)
Q Consensus       185 d~~~~~~~~~~-~~~~~~~~~~~~~~~~g-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (321)
                      +....+....- ..+.+.+|..++|+|..     ..+++.....++.+|.+. |+.+..-..-.-...|+..   .++|+
T Consensus       160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisY---f~NGE  235 (1081)
T KOG1538|consen  160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISY---FTNGE  235 (1081)
T ss_pred             cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhhee---ccCCc
Confidence            65433222221 23456789999999963     457777888888888764 4433322111112234332   36899


Q ss_pred             EEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          259 YIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      +++.|+.|+.+.+|- +.+..+.++......|+.++.+|++.+++.|..|  |+|-.|++
T Consensus       236 y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD--GTiACyNl  292 (1081)
T KOG1538|consen  236 YILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD--GTIACYNL  292 (1081)
T ss_pred             EEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEcc--Ceeehhhh
Confidence            999999999999997 4566666776677899999999999999999975  78988875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.1e-24  Score=189.31  Aligned_cols=251  Identities=19%  Similarity=0.368  Sum_probs=200.5

Q ss_pred             ccEEEEEECCCCCE----EEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCC-EEEEEeCCCcEE
Q 020798           24 RAISSVKFSHDGRL----LASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR-FLVSASDDKTIR   98 (321)
Q Consensus        24 ~~v~~~~~s~~g~~----l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~~~~~d~~i~   98 (321)
                      ..-+.++|.+.|..    ||.|.+||.|.+|+...+..  ......+..+..|++.|..+.|++.+. .||+|+.||.|.
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~--~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA--NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhcc--CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            45678999988765    89999999999998876421  222345677889999999999999765 999999999999


Q ss_pred             EEecCCcceeeee--ecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEEEeCCCC--CeeEEEEccCCC-EE
Q 020798           99 LWDVPTATCLKTL--IGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPAHSD--PVTAVDFNRDGT-MI  172 (321)
Q Consensus        99 iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~-~l  172 (321)
                      |||+.+.+.....  ....+.|.+++|+..- ..|++++.+|.+.+||++..+.+..+..+..  .+..++|+|+.. .+
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence            9999875433222  2245679999998764 4678899999999999998877766655543  477999999864 56


Q ss_pred             EEEeCCC---eEEEEeCCCCceeeeeccCCCCCeEEEEEccCC-CEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEE
Q 020798          173 VTSSYDG---LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNG-KFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI  248 (321)
Q Consensus       173 ~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  248 (321)
                      ++++.|.   .|.+||+|......+.+..|...+..+.|++.+ .++++++.|+.|.+|+..+++.+..+..  ...++.
T Consensus       223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~f  300 (1049)
T KOG0307|consen  223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCF  300 (1049)
T ss_pred             eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCccee
Confidence            6666544   699999997666556667788899999999976 7888999999999999999999988865  445677


Q ss_pred             EeEEEecCCeEEEEeCCCCeEEEEEcccce
Q 020798          249 SSTFSVTNGKYIVSGSEDSCVYLWELQSRK  278 (321)
Q Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (321)
                      ...|++.+...+++++-||.|.||.+....
T Consensus       301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeeecCCCcchhhhheeccceeeeeeecCC
Confidence            778888788899999999999999987653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=6.5e-24  Score=174.23  Aligned_cols=271  Identities=26%  Similarity=0.387  Sum_probs=200.7

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      +.+.-++.-|...|..++|.|....|++++.|+.+++|.+............++.+|.+|.++|.|++++++++.+++|+
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg  363 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG  363 (577)
T ss_pred             cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence            44555677899999999999999999999999999999996544444455678899999999999999999999999999


Q ss_pred             CCCcEEEEecCCc----------ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe--CCCCCe
Q 020798           93 DDKTIRLWDVPTA----------TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP--AHSDPV  160 (321)
Q Consensus        93 ~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~v  160 (321)
                      .||+|+.|++...          .....+.||.+.++.+++++...+|++|+.||+++.|+...... .++.  .....-
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P  442 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP  442 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence            9999999976522          12345789999999999999999999999999999999866554 2222  112233


Q ss_pred             eEEEEccCC-CEEEEEeCCCeEEEEeCCCCceeeeeccC------CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc
Q 020798          161 TAVDFNRDG-TMIVTSSYDGLCRIWDASTGHCMKTLIDD------ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK  233 (321)
Q Consensus       161 ~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~  233 (321)
                      .++++.... .+.++...-+...+++......+..+...      ....+..+.++|.+...+++..|+.|+++|..+++
T Consensus       443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            455554332 12222222233333333333322222111      11346778899999999999999999999999999


Q ss_pred             EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC
Q 020798          234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT  287 (321)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~  287 (321)
                      ++.....|...   ++.....++|.+|++++.|+.+++|.+....++.....|.
T Consensus       523 ~l~s~~a~~~s---vtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  523 ILHSMVAHKDS---VTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cchheeeccce---ecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            99888777654   3444556899999999999999999997766655554443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.92  E-value=4.2e-22  Score=157.09  Aligned_cols=230  Identities=25%  Similarity=0.423  Sum_probs=176.6

Q ss_pred             ccccccccEEEEEECC-CCCEEEEEeCCCcEEEEecCCcc-------eeeeeecCcccEEEEEECCCC-CEEEEeeCCCc
Q 020798           68 KFTGHEQGVSDLVFSS-DSRFLVSASDDKTIRLWDVPTAT-------CLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDET  138 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~  138 (321)
                      .+.+|++.|.+++|+| +...||+|+.|.+|.||.+..+.       ++..+.+|...|..++|+|.. +.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4679999999999999 45688999999999999986642       356788999999999999964 67899999999


Q ss_pred             EEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE
Q 020798          139 VRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG  218 (321)
Q Consensus       139 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  218 (321)
                      |.+|++.+++.+..+. |.+.|.++.|+.+|.++++++.|..|++||.++++.+..-....+.....+.|-.+|..+.+|
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999888877 999999999999999999999999999999999988776644444455667788889855554


Q ss_pred             e---cCCeEEEEeCCCCcE-EEEEeccCCceeEEEeEEEecCCeE-EEEeCCCCeEEEEEcccceE-EEEecC--CCCCe
Q 020798          219 T---LDNTLRLWNYSTGKI-LKTYTGHTNSKYCISSTFSVTNGKY-IVSGSEDSCVYLWELQSRKV-VQKLEG--HTDPV  290 (321)
Q Consensus       219 ~---~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~-~~~~~~--h~~~v  290 (321)
                      .   ++.++-+||..+.+. +......+.  ..+...|+.+|... .++|-.|+.||.|++..... ++-+..  ...+.
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~elDtS--nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQ  312 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQELDTS--NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQ  312 (472)
T ss_pred             cccccccceeccCcccccCcceeEEeccC--CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcc
Confidence            3   467899999765432 222211121  12444566555554 45788999999999977652 333332  24577


Q ss_pred             EEEEecCCCc
Q 020798          291 ISVASHPTEN  300 (321)
Q Consensus       291 ~~~~~~p~~~  300 (321)
                      +++.|-|..-
T Consensus       313 RG~g~mPKRG  322 (472)
T KOG0303|consen  313 RGMGFMPKRG  322 (472)
T ss_pred             cccccccccc
Confidence            8888888743

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.91  E-value=8.7e-23  Score=170.17  Aligned_cols=127  Identities=20%  Similarity=0.324  Sum_probs=105.0

Q ss_pred             eeccCCcccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           17 QTLNGHLRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      ..|.+|...|+.+.|+| +..+||+|+.|..+++|.+.+.....-  ..+...+.+....+.++.|+|...-|+..+..|
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L--Sape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL--SAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc--CCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            45778999999999998 667899999999999998863221111  122223334455788999999877777778889


Q ss_pred             cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC
Q 020798           96 TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK  145 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  145 (321)
                      +++|||+.+++.+..+.+|.+.|.+..|+.||..+++++.|..|++||.+
T Consensus       151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPR  200 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR  200 (1012)
T ss_pred             eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence            99999999999999999999999999999999999999999999999975

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=6.4e-24  Score=187.40  Aligned_cols=285  Identities=22%  Similarity=0.397  Sum_probs=209.4

Q ss_pred             EEEECCCCC-EEEEecC----------CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCE----EEEEe
Q 020798           28 SVKFSHDGR-LLASSSA----------DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRF----LVSAS   92 (321)
Q Consensus        28 ~~~~s~~g~-~l~~~~~----------d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~----l~~~~   92 (321)
                      ..+|+|++. ++|+|..          +..+-+|.+......  ....+...+. -....+.++|.+.+..    |+.|.
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~--~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~   87 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES--SDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGL   87 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc--cccccccccc-ccccceeeeecccCCCccceeeccc
Confidence            479999997 5665533          344445544322111  0011111221 2345788999988765    88999


Q ss_pred             CCCcEEEEecCCc------ceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEEE--eCCCCCeeEE
Q 020798           93 DDKTIRLWDVPTA------TCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVL--PAHSDPVTAV  163 (321)
Q Consensus        93 ~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~  163 (321)
                      .||.|.+||....      ..+.+...|.+.|..+.|++.. +.|++|+.+|.|.+||+.+-+.....  ....+.|.++
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL  167 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence            9999999997652      2345567899999999999965 59999999999999999864433222  1234679999


Q ss_pred             EEccC-CCEEEEEeCCCeEEEEeCCCCceeeeeccCCC-CCeEEEEEccCCC-EEEEEecCC---eEEEEeCCCC-cEEE
Q 020798          164 DFNRD-GTMIVTSSYDGLCRIWDASTGHCMKTLIDDEN-PPVSFVKFSPNGK-FILVGTLDN---TLRLWNYSTG-KILK  236 (321)
Q Consensus       164 ~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~l~~~~~d~---~i~i~d~~~~-~~~~  236 (321)
                      +|+.. ...|++++.+|.+.+||++..+.+-.+..... ..+..++|+|++. .+++++.|.   .|.+||++.. .+++
T Consensus       168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k  247 (1049)
T KOG0307|consen  168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK  247 (1049)
T ss_pred             ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence            99975 45688899999999999998765554432222 3467899999763 455555543   6999998754 4677


Q ss_pred             EEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCc-eEEEEeecCCccEEE
Q 020798          237 TYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN-IIASGALDNDRTVKI  315 (321)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~d~~~~i~i  315 (321)
                      .+++|...+.++  .|+..|.++|++++.|+.|.+|+.++++.+..+..-.+.+..+.|+|... .++.++.|  |.|.|
T Consensus       248 ~~~~H~~Gilsl--sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd--gkI~I  323 (1049)
T KOG0307|consen  248 ILEGHQRGILSL--SWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD--GKISI  323 (1049)
T ss_pred             hhcccccceeee--ccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheec--cceee
Confidence            888888776554  45567789999999999999999999999999988888999999999986 78888876  78999


Q ss_pred             cccc
Q 020798          316 WTQE  319 (321)
Q Consensus       316 w~~~  319 (321)
                      |.++
T Consensus       324 ~sl~  327 (1049)
T KOG0307|consen  324 YSLQ  327 (1049)
T ss_pred             eeee
Confidence            9875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.8e-22  Score=152.81  Aligned_cols=245  Identities=20%  Similarity=0.370  Sum_probs=172.5

Q ss_pred             ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcce-----eeeeecCcccEEEEEECCCCCEE-EEeeCCCcE
Q 020798           66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC-----LKTLIGHTNYVFCVNFNPQSNMI-VSGAFDETV  139 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i  139 (321)
                      +..+++|.+.|++++|+.||++|++++.|+.|++|+++....     ++... .-+..+.+.|.||-+-+ +++-...++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence            456789999999999999999999999999999999876532     21111 11245678999997654 455566689


Q ss_pred             EEEecCCCE---EE---------EEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEE
Q 020798          140 RIWDVKTGK---CL---------KVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVK  207 (321)
Q Consensus       140 ~~wd~~~~~---~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  207 (321)
                      ++|.+...+   ..         ..-..|.-.+..+-...++.++.+++.|..|.+|+++ |+.+..+-... ......+
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq-~~n~~aa  235 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ-SSNYDAA  235 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc-cccccee
Confidence            999763221   10         0112345556666666777899999999999999999 66666653332 2345678


Q ss_pred             EccCCCEEEEEecCCeEEEEeCC---CC-----cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc---
Q 020798          208 FSPNGKFILVGTLDNTLRLWNYS---TG-----KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS---  276 (321)
Q Consensus       208 ~~~~g~~l~~~~~d~~i~i~d~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---  276 (321)
                      .+|+|+++++++..-.+++|.+-   +|     +.+..+.+|...+   ....+.++.+.+++.+.||+.++||..-   
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV---~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~  312 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV---LAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE  312 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe---eeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence            99999999999998899999852   22     2345677887654   3333457889999999999999999742   


Q ss_pred             ----ceEEEEe----cCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          277 ----RKVVQKL----EGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       277 ----~~~~~~~----~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                          .+.++..    ....+.-..++.+|.|..||..+   ...++++..|
T Consensus       313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~---gs~l~~~~se  360 (420)
T KOG2096|consen  313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF---GSDLKVFASE  360 (420)
T ss_pred             cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec---CCceEEEEcc
Confidence                2222222    11222334899999999999875   2458888765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.1e-23  Score=172.85  Aligned_cols=288  Identities=19%  Similarity=0.311  Sum_probs=199.0

Q ss_pred             EEECCCCC--EEEEecCCceEEEe--eccccCCCCCCC------------CCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           29 VKFSHDGR--LLASSSADKTLLTY--SLSSISNSDSTP------------PSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        29 ~~~s~~g~--~l~~~~~d~~v~~~--~~~~~~~~~~~~------------~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      +++.|.+.  ..++...+....+|  ++..........            ..+..++..|.+.|+.+.|+|....|++++
T Consensus       234 i~~~~~~~k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~s  313 (577)
T KOG0642|consen  234 ITNPPEGTKSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITAS  313 (577)
T ss_pred             ccCCcccCCCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEec
Confidence            45555442  45555566666677  443332211111            122335667899999999999999999999


Q ss_pred             CCCcEEEEecCC--------cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC----------EEEEEEe
Q 020798           93 DDKTIRLWDVPT--------ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG----------KCLKVLP  154 (321)
Q Consensus        93 ~d~~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----------~~~~~~~  154 (321)
                      .||.+++|++..        .+++.++.+|.++|.|+++.+++..+++|+.||+|+.|++...          .....+.
T Consensus       314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~  393 (577)
T KOG0642|consen  314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL  393 (577)
T ss_pred             cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence            999999999932        2356788999999999999999999999999999999965311          1234567


Q ss_pred             CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce-eeeeccCCCCCeEEEEEccCC-CEEEEEecCCeEEEEeCCCC
Q 020798          155 AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC-MKTLIDDENPPVSFVKFSPNG-KFILVGTLDNTLRLWNYSTG  232 (321)
Q Consensus       155 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~d~~i~i~d~~~~  232 (321)
                      +|.+.++.+++++....|++++.||+++.|+...... .......+..+ ..+.+-... ...++...-+.-.++++...
T Consensus       394 Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P-lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~  472 (577)
T KOG0642|consen  394 GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP-LSVDRTSSRPAHSLASFRFGYTSIDDMEVV  472 (577)
T ss_pred             ccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCc-ceEeeccchhHhhhhhcccccccchhhhhh
Confidence            8999999999999988999999999999999865543 11111122222 233333222 11222222222233333333


Q ss_pred             cEEEEEeccCCce----eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeec
Q 020798          233 KILKTYTGHTNSK----YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALD  308 (321)
Q Consensus       233 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d  308 (321)
                      ..+..+.....+.    ..+....+.+++.+.+++-.|+.|+++|..++++++....|...++++++.|+|.+|++|+  
T Consensus       473 s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s--  550 (577)
T KOG0642|consen  473 SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS--  550 (577)
T ss_pred             hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec--
Confidence            3333332111110    1122334456788899999999999999999999999999999999999999999999998  


Q ss_pred             CCccEEEcccc
Q 020798          309 NDRTVKIWTQE  319 (321)
Q Consensus       309 ~~~~i~iw~~~  319 (321)
                      .|+.|++|.++
T Consensus       551 ~d~sv~l~kld  561 (577)
T KOG0642|consen  551 HDGSVRLWKLD  561 (577)
T ss_pred             CCceeehhhcc
Confidence            56899999985

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.2e-21  Score=143.06  Aligned_cols=270  Identities=17%  Similarity=0.252  Sum_probs=187.7

Q ss_pred             ccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCC--CcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           24 RAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPP--SPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~--~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      ..|.+-+++|.+++|+.|..+|.|.+..+.........++  .++-...+|+++|+.++|.  ..+|++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            5677789999999999999999999999887655443333  3444557899999999998  34666665 59999997


Q ss_pred             cCCcce------eeee--e-----cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC
Q 020798          102 VPTATC------LKTL--I-----GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus       102 ~~~~~~------~~~~--~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      ......      +...  .     ..-..|+++.+.|..+.++.++.|+.++-||+++|+....+.+|.+.+.++.-...
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            643211      0000  1     12245888999998888888889999999999999999999999999999988655


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCC-------eEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc
Q 020798          169 GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPP-------VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH  241 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  241 (321)
                      ...+++|++||++|+||.++++++..+.....+.       -...+..-+..++++|+ ...+.+|+++..+....+.-.
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfpip  246 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIP  246 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEecc
Confidence            6678999999999999999998877653222111       11134444666887665 456999999998877766532


Q ss_pred             CCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEE
Q 020798          242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIAS  304 (321)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  304 (321)
                      .. ..-+  .|   ....++++++.+.|.-|.+. +.+-..+.......++..|+..--.+++
T Consensus       247 a~-v~~v--~F---~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s  302 (325)
T KOG0649|consen  247 AR-VHLV--DF---VDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFIS  302 (325)
T ss_pred             cc-eeEe--ee---ecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEE
Confidence            21 1111  22   24567778888899999875 3333333333334455555544333333

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.2e-23  Score=168.35  Aligned_cols=296  Identities=26%  Similarity=0.402  Sum_probs=229.4

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC--CCEEEEE
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD--SRFLVSA   91 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~~~   91 (321)
                      .+...|.+|.+.|..+-|+..|..|++|+.|..+.+|++.....       .+.-..+|...|..-.|-|.  .+.++++
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~-------~l~f~SGH~~NvfQaKFiP~s~d~ti~~~  205 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP-------KLSFESGHCNNVFQAKFIPFSGDRTIVTS  205 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc-------ccccccccccchhhhhccCCCCCcCceec
Confidence            34567889999999999999999999999999999998765321       22334578888888888874  4678999


Q ss_pred             eCCCcEEEEecCCcce---eeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEEEe---CCCC---Cee
Q 020798           92 SDDKTIRLWDVPTATC---LKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLP---AHSD---PVT  161 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~---~v~  161 (321)
                      +.||++++=.+.....   .+.+..|.+.|..++.-|+. ..|.+++.|+.+.-+|++.+.+...+.   .+..   ...
T Consensus       206 s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~  285 (559)
T KOG1334|consen  206 SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY  285 (559)
T ss_pred             cccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeee
Confidence            9999999877643322   34566799999999999875 568999999999999998775443332   2222   356


Q ss_pred             EEEEccCCC-EEEEEeCCCeEEEEeCCCCce-----------eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          162 AVDFNRDGT-MIVTSSYDGLCRIWDASTGHC-----------MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       162 ~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                      +++..|... .+++++.|..+++||.+....           ...+.......|++++|+.++.-++++..|-.|++|.-
T Consensus       286 ~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~  365 (559)
T KOG1334|consen  286 TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK  365 (559)
T ss_pred             eEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecc
Confidence            888888765 789999999999999864321           11222233346899999988878888888889999953


Q ss_pred             C--CC----------cEEEE-EeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEec
Q 020798          230 S--TG----------KILKT-YTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASH  296 (321)
Q Consensus       230 ~--~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  296 (321)
                      .  .+          ..++. |++|.+....-...|+.|...++++|+..|.|.||+-.+++.+..+++-..-|+||.=|
T Consensus       366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpH  445 (559)
T KOG1334|consen  366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPH  445 (559)
T ss_pred             ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCC
Confidence            2  22          23333 78887766555566777889999999999999999999999998888866689999999


Q ss_pred             CCCceEEEEeecCCccEEEccc
Q 020798          297 PTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       297 p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      |.-..||+.|.|.|  ||||..
T Consensus       446 P~~PvLAsSGid~D--VKIWTP  465 (559)
T KOG1334|consen  446 PHLPVLASSGIDHD--VKIWTP  465 (559)
T ss_pred             CCCchhhccCCccc--eeeecC
Confidence            99999999999865  999987

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.91  E-value=6.5e-20  Score=158.26  Aligned_cols=291  Identities=36%  Similarity=0.698  Sum_probs=220.2

Q ss_pred             eccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccccccc-ccEEEEEE-CCCCC-EEEEEeC-
Q 020798           18 TLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHE-QGVSDLVF-SSDSR-FLVSASD-   93 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~-~~~~~-~l~~~~~-   93 (321)
                      .+.+|...+.++.|.+.+..++.++.|+.+.+|+.....       .....+..+. ..+..+.+ ++++. .++..+. 
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL  132 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEeccCCC
Confidence            456899999999999999999999999999999875422       1233344422 36677777 78877 5554444 


Q ss_pred             CCcEEEEecCC-cceeeeeecCcccEEEEEECCCCCEEEEeeC-CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC-
Q 020798           94 DKTIRLWDVPT-ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT-  170 (321)
Q Consensus        94 d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-  170 (321)
                      |+.+.+|+... ......+..|...+..++++|++..+++++. ++.+++|++..+.....+..|...+..++|+|++. 
T Consensus       133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  212 (466)
T COG2319         133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL  212 (466)
T ss_pred             CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence            89999999988 6677788899999999999999998888875 99999999998888888888999999999999998 


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcE-EEEEeccCCceeEEE
Q 020798          171 MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKI-LKTYTGHTNSKYCIS  249 (321)
Q Consensus       171 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~  249 (321)
                      .+++++.|+.+++||...+.........+.... ...|+|++..+++++.|+.+++|+...... +..+..|......+ 
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~-  290 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV-  290 (466)
T ss_pred             EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEE-
Confidence            455558999999999886665553333333332 237999998888999999999999986654 44444454443333 


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec--CCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE--GHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                        ...+++..+++++.|+.+++|+...........  .|...+..+.+.+++..++.+.. .|+.+.+|+...
T Consensus       291 --~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~  360 (466)
T COG2319         291 --AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS-DDGTIRLWDLRT  360 (466)
T ss_pred             --EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeec-CCCcEEeeecCC
Confidence              333567777778888999999998887666655  78888999999433255665532 347888898753

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.1e-21  Score=154.88  Aligned_cols=295  Identities=19%  Similarity=0.330  Sum_probs=211.8

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccc-cccccEEEEEECCCCCEEEEEeCCCcE
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFT-GHEQGVSDLVFSSDSRFLVSASDDKTI   97 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~~~~~d~~i   97 (321)
                      +.+|.+.|.++.||+++++|++|+.|..+++|.+.......  .++|+.... .|...|.+++|....+++++|..+++|
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k--~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK--TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc--CCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            56899999999999999999999999999999987654322  334454433 355789999999999999999999999


Q ss_pred             EEEecCCcceeeeeecCcc---cEEEEEECCCCCEEEEeeCCCcEEEEecCCCE-EEE--EEeCCCCCeeEEEEccCCC-
Q 020798           98 RLWDVPTATCLKTLIGHTN---YVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK-CLK--VLPAHSDPVTAVDFNRDGT-  170 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~--~~~~~~~~v~~~~~~~~~~-  170 (321)
                      ...|+++.+.+... .|..   .|..+..+|..+.|++.+.++.|.+||.+... ...  ...........+.|+|... 
T Consensus       130 I~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  130 IKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             Eeeecccceeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            99999998765543 3444   79999999999999999999999999998654 111  1223345678899999754 


Q ss_pred             EEEEEeCCCeEEEEeCCCCceee-e--ecc---CCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCc
Q 020798          171 MIVTSSYDGLCRIWDASTGHCMK-T--LID---DENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS  244 (321)
Q Consensus       171 ~l~~~~~dg~i~~~d~~~~~~~~-~--~~~---~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  244 (321)
                      ++++.+..+-+.+||.+...... .  ...   .....-....|+|.|+.+++--....-.+||+-..++......|...
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~  288 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN  288 (609)
T ss_pred             eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence            66778888889999998653211 1  111   11112245789999998877655555667787664432211122221


Q ss_pred             eeE----EEeEEEecCCeEEEEeCCCCeEEEEEccc-----c------------------eEEEEecCCCCCeEEEEecC
Q 020798          245 KYC----ISSTFSVTNGKYIVSGSEDSCVYLWELQS-----R------------------KVVQKLEGHTDPVISVASHP  297 (321)
Q Consensus       245 ~~~----~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~------------------~~~~~~~~h~~~v~~~~~~p  297 (321)
                      .+|    +..+.+. +..-+++|+.+=.|++|.+..     +                  +.+..++||..-++.+.|+|
T Consensus       289 GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~  367 (609)
T KOG4227|consen  289 GYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ  367 (609)
T ss_pred             cceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence            222    2222222 344589999999999998732     1                  12345789999999999999


Q ss_pred             CCceEEEEeecCCccEEEcccc
Q 020798          298 TENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       298 ~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ...+|++.+..  ..+|||..-
T Consensus       368 H~~~l~SSGVE--~~~KlWS~~  387 (609)
T KOG4227|consen  368 HNNLLVSSGVE--NSFKLWSDH  387 (609)
T ss_pred             CcceEeccchh--hheeccccc
Confidence            99999998865  689999753

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=2.1e-22  Score=166.57  Aligned_cols=241  Identities=27%  Similarity=0.394  Sum_probs=183.3

Q ss_pred             cccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCE--EEEeeCCCcEEEEec
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM--IVSGAFDETVRIWDV  144 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~~wd~  144 (321)
                      ..+.+|++.|.+|...|.|.+|++|+.||+|+||.+.+++|++.+. ..+.|.|++|+|.++.  |+++-. ..+.+.+.
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp  471 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNP  471 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEeCc
Confidence            3567999999999999999999999999999999999999998775 4568999999997653  444433 33444432


Q ss_pred             CCC-------------------------------------EEEEEEeCCCCCeeEEEEccCCCEEEEEeCC---CeEEEE
Q 020798          145 KTG-------------------------------------KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD---GLCRIW  184 (321)
Q Consensus       145 ~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~  184 (321)
                      .-|                                     .-+.....|...|.++.|+..|.+|++...+   ..|.|+
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence            111                                     0012233577889999999999999987653   468888


Q ss_pred             eCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeC
Q 020798          185 DASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS  264 (321)
Q Consensus       185 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (321)
                      ++........ +......+..+.|+|...+|++++. ..|+|||+..+.+++.+...   ..-++.....+.|..|+.|+
T Consensus       552 QLSK~~sQ~P-F~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg---~kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  552 QLSKRKSQSP-FRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG---SKWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             ecccccccCc-hhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC---CeeeeeeeecCCCCeEEEec
Confidence            8876543322 2234456889999999999988775 56999999887766655322   22345555567899999999


Q ss_pred             CCCeEEEEEcccc-eEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEc
Q 020798          265 EDSCVYLWELQSR-KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW  316 (321)
Q Consensus       265 ~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw  316 (321)
                      .|+.+..||+.-. +..+.+..|...|++|+||+...++++|+.  |+++.++
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd--Dgtv~Vf  677 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD--DGTVIVF  677 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC--CCcEEEE
Confidence            9999999999754 567788899999999999999999999984  4677665

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=1.9e-19  Score=155.42  Aligned_cols=290  Identities=41%  Similarity=0.757  Sum_probs=220.3

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecC-CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCC-EEEEE
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSA-DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR-FLVSA   91 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~~~   91 (321)
                      .....+..|...|..++|+|+++.+++++. |+.+++|+...        ...+..+.+|...|.+++|+|+++ .++++
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  217 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--------GKPLSTLAGHTDPVSSLAFSPDGGLLIASG  217 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--------CceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence            456678899999999999999999988886 99999998764        234556667999999999999998 55555


Q ss_pred             eCCCcEEEEecCCcceee-eeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEE-EEEEeCCCCCeeEEEEccCC
Q 020798           92 SDDKTIRLWDVPTATCLK-TLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKC-LKVLPAHSDPVTAVDFNRDG  169 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~  169 (321)
                      +.|+.+++||...+.... .+.+|.... ...|+|++..+++++.|+.+++|+.+.... ...+..|...+.++.|.|++
T Consensus       218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  296 (466)
T COG2319         218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG  296 (466)
T ss_pred             cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCC
Confidence            999999999988777766 577888775 448999998889999999999999986654 44446778899999999988


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeec-cCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEeCCCCcEEEEEeccCCceeE
Q 020798          170 TMIVTSSYDGLCRIWDASTGHCMKTLI-DDENPPVSFVKFSPNGKFILVG-TLDNTLRLWNYSTGKILKTYTGHTNSKYC  247 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  247 (321)
                      ..+++++.|+.+.+||........... ..+...+..+.+.+++..++.+ ..|+.+.+|+...............   .
T Consensus       297 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~  373 (466)
T COG2319         297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN---V  373 (466)
T ss_pred             CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce---E
Confidence            888888888889999988776554443 2333357778884333566665 5788999999887763332222211   1


Q ss_pred             EEeEEEecCCeEEEE-eCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          248 ISSTFSVTNGKYIVS-GSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       248 ~~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ....+.. + ..+.. +..++.+.+|+............+...+....+.+++..+++++  .++.+++|+..
T Consensus       374 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  442 (466)
T COG2319         374 LSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS--SDNTIRLWDLK  442 (466)
T ss_pred             EEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEec--CCCcEEEEecc
Confidence            2223333 3 33443 78999999999998877766655447899999999999999866  35789999875

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.89  E-value=1.8e-21  Score=153.60  Aligned_cols=213  Identities=20%  Similarity=0.372  Sum_probs=167.3

Q ss_pred             ccCCcccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC-CEEEEEeCCCc
Q 020798           19 LNGHLRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS-RFLVSASDDKT   96 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d~~   96 (321)
                      ..||.++|..++|+| +...||+||+|.+|.+|++-+... .....+|+..+.+|...|-.+.|+|.. +.|++++.|..
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l-~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL-TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCccc-ccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            469999999999998 456899999999999998754322 122336778899999999999999975 67889999999


Q ss_pred             EEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCC-CeeEEEEccCCCEEEEE
Q 020798           97 IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD-PVTAVDFNRDGTMIVTS  175 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~  175 (321)
                      |.+||+.+++.+..+. |...|.++.|+.+|++|++.+.|..|++||.++++.+..-..|.+ ....+-|-.++..+-+|
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999877766 999999999999999999999999999999999998887777764 33456677788744444


Q ss_pred             e---CCCeEEEEeCCCCcee-eeeccCCCCCeEEEEEccCCCEEEE-EecCCeEEEEeCCCCc
Q 020798          176 S---YDGLCRIWDASTGHCM-KTLIDDENPPVSFVKFSPNGKFILV-GTLDNTLRLWNYSTGK  233 (321)
Q Consensus       176 ~---~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~-~~~d~~i~i~d~~~~~  233 (321)
                      -   .+..+-+||..+-... .....+....|..--|+++.+.+.. |-.|+.|+.|.+.+..
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            2   4667999997653322 1111133445666678888877655 5579999999987655

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=4.6e-21  Score=145.99  Aligned_cols=243  Identities=24%  Similarity=0.426  Sum_probs=184.0

Q ss_pred             eccCCcccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC---CCEEEEEeC
Q 020798           18 TLNGHLRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD---SRFLVSASD   93 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~~~l~~~~~   93 (321)
                      .-.+|..+|.++.|-| |.-++.+++.|.++++||........        .| .-++.|++-+++|-   .-++|+|..
T Consensus        96 h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~--------~F-~me~~VYshamSp~a~sHcLiA~gtr  166 (397)
T KOG4283|consen   96 HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV--------DF-KMEGKVYSHAMSPMAMSHCLIAAGTR  166 (397)
T ss_pred             CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE--------Ee-ecCceeehhhcChhhhcceEEEEecC
Confidence            3468999999999988 56689999999999999876533211        11 12356777778873   346788888


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCE-EEEeeCCCcEEEEecCCC-EEEEE--------------EeCCC
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTG-KCLKV--------------LPAHS  157 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~-~~~~~--------------~~~~~  157 (321)
                      +-+|++-|+.++.+.+.+.+|...|.++.|+|...+ |++|+.||.|++||++.. .+...              -+.|.
T Consensus       167 ~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~  246 (397)
T KOG4283|consen  167 DVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY  246 (397)
T ss_pred             CCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc
Confidence            999999999999999999999999999999998876 688999999999999753 22222              23566


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC--CC----CCeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 020798          158 DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD--EN----PPVSFVKFSPNGKFILVGTLDNTLRLWNYST  231 (321)
Q Consensus       158 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~----~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~  231 (321)
                      +.+..++|..++.++++++.|..+++|+..+|+.......+  ++    ..+. +. +.+...++.--.++.+.++++-.
T Consensus       247 gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~s  324 (397)
T KOG4283|consen  247 GKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLE  324 (397)
T ss_pred             ceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccC
Confidence            78999999999999999999999999998877543222111  11    1111 22 22333444445568899999999


Q ss_pred             CcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          232 GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      +..++.+..|-..   +.+++..++-+...+|.-|+.|..|-.
T Consensus       325 gs~ir~l~~h~k~---i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  325 GSFVRRLSTHLKR---INCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ceEEEeeecccce---eeEEeecCchhhhhccccCCccccccc
Confidence            9999999888433   445566678888999999999999986

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=1.1e-21  Score=157.31  Aligned_cols=247  Identities=16%  Similarity=0.288  Sum_probs=176.2

Q ss_pred             cccccccEEEEEECCCC--CEEEEEeCCCcEEEEecCCcc----eeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEE
Q 020798           69 FTGHEQGVSDLVFSSDS--RFLVSASDDKTIRLWDVPTAT----CLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRI  141 (321)
Q Consensus        69 ~~~h~~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~  141 (321)
                      ..-+.+.|++++|+|..  +.+++|...|+|-+||+.+.+    .+..+..|+.+|.++.|+|.+ ..+++.+.||+|++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            34577899999999965  478899999999999995332    244567899999999999964 67999999999999


Q ss_pred             EecCCCEEEEEEeC--CCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCC-EEEEE
Q 020798          142 WDVKTGKCLKVLPA--HSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK-FILVG  218 (321)
Q Consensus       142 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~  218 (321)
                      -|++.......+..  ....+.++.|+.+...++++..=|...+||++++........-+...|..++++|... +|+++
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~  341 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA  341 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence            99987643322222  3445667888888777888887779999999987653333333455799999999654 57889


Q ss_pred             ecCCeEEEEeCCCCcEEE----EEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc----cceEEEEec-C--CC
Q 020798          219 TLDNTLRLWNYSTGKILK----TYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ----SRKVVQKLE-G--HT  287 (321)
Q Consensus       219 ~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~-~--h~  287 (321)
                      +.|++.+|||++......    ....|..   .+...++.|++..|+|.+.|..|+|||..    .......+. .  +.
T Consensus       342 s~D~T~kIWD~R~l~~K~sp~lst~~Hrr---sV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~  418 (498)
T KOG4328|consen  342 SLDQTAKIWDLRQLRGKASPFLSTLPHRR---SVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTG  418 (498)
T ss_pred             ccCcceeeeehhhhcCCCCcceecccccc---eeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccc
Confidence            999999999997643222    2223333   24444445555559999999999999983    222222222 1  11


Q ss_pred             CC--eEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          288 DP--VISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       288 ~~--v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ..  ....+|.|+.++++.|-.  .+.|-|+|.+.
T Consensus       419 RwlT~fKA~W~P~~~li~vg~~--~r~IDv~~~~~  451 (498)
T KOG4328|consen  419 RWLTPFKAAWDPDYNLIVVGRY--PRPIDVFDGNG  451 (498)
T ss_pred             ccccchhheeCCCccEEEEecc--CcceeEEcCCC
Confidence            22  345789999999999874  35688887654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=1.8e-21  Score=157.85  Aligned_cols=267  Identities=20%  Similarity=0.300  Sum_probs=197.5

Q ss_pred             ecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE--EeCCCcEEEEecCCc--ceeeeeecCcc
Q 020798           41 SSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS--ASDDKTIRLWDVPTA--TCLKTLIGHTN  116 (321)
Q Consensus        41 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~--~~~~~~~~~~~  116 (321)
                      ++....+++||........    . ....+ ...++.++.|..... |++  .+.|..+++|.-...  +....-.....
T Consensus         8 aS~gd~~kl~D~s~~~~~~----~-~~~~t-~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd   80 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDLETKS----E-YVHQT-AEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD   80 (673)
T ss_pred             eccCCceEEeecccccCcc----c-cccCC-CCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc
Confidence            3445578899987643211    1 11111 123488999987654 443  456778888864332  11111111222


Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec
Q 020798          117 YVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI  196 (321)
Q Consensus       117 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  196 (321)
                      ...|++......++++|+..+.|++||++...+.+.++.|...|+.+.++....++++++..|.|.+..+.++.....+.
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~  160 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT  160 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence            34566666666899999999999999999777788889999999999999999999999999999999998877666665


Q ss_pred             cCCCCCeEEEEEccCCCEE-EEEecCCeEEEEeCCCCcEEEEEe-ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          197 DDENPPVSFVKFSPNGKFI-LVGTLDNTLRLWNYSTGKILKTYT-GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       197 ~~~~~~~~~~~~~~~g~~l-~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      .+.+..+..+.|+|..+.+ .+++.+|.|.+||+....++..+. .|..+.  -..+|++.+..+|++.+.|..|.+||.
T Consensus       161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~--~gicfspsne~l~vsVG~Dkki~~yD~  238 (673)
T KOG4378|consen  161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC--RGICFSPSNEALLVSVGYDKKINIYDI  238 (673)
T ss_pred             cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc--CcceecCCccceEEEecccceEEEeec
Confidence            5556667789999977665 567889999999998877776553 344443  344677777888999999999999999


Q ss_pred             ccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          275 QSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       275 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ...+...++.. ..|...++|.++|.+|+.|.  ..|.|..||+.
T Consensus       239 ~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~--s~G~~i~YD~R  280 (673)
T KOG4378|consen  239 RSQASTDRLTY-SHPLSTVAFSECGTYLCAGN--SKGELIAYDMR  280 (673)
T ss_pred             ccccccceeee-cCCcceeeecCCceEEEeec--CCceEEEEecc
Confidence            98877766653 45899999999999999997  46899999985

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=3.7e-21  Score=160.35  Aligned_cols=253  Identities=20%  Similarity=0.284  Sum_probs=178.6

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC-CEEEEEeCCC
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS-RFLVSASDDK   95 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d~   95 (321)
                      +....|...|..+.|.|....|++++.|.+++.||+.....      .-...+.+|.+.|.+++|.|+. ..|++|+.||
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg  167 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL------VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDG  167 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeecccee------ecceeecccccccchhhhccCCCcceeeccCCC
Confidence            44568999999999999667899999999999999865321      1123467999999999999965 4678999999


Q ss_pred             cEEEEecCCcc--------------------e-------eeeeecCcccEEE---EEECCCCCEEEEeeC-CCcEEEEec
Q 020798           96 TIRLWDVPTAT--------------------C-------LKTLIGHTNYVFC---VNFNPQSNMIVSGAF-DETVRIWDV  144 (321)
Q Consensus        96 ~i~iwd~~~~~--------------------~-------~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~~wd~  144 (321)
                      .|.|||++-..                    .       .....++...|.+   +.+..|...|++++. |+.|+|||+
T Consensus       168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL  247 (720)
T KOG0321|consen  168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL  247 (720)
T ss_pred             cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence            99999985322                    0       0112234455555   556778889999887 999999999


Q ss_pred             CCCEEEEE--------EeCC---CCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCcee--eeeccCCCCC-eEEEEEcc
Q 020798          145 KTGKCLKV--------LPAH---SDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM--KTLIDDENPP-VSFVKFSP  210 (321)
Q Consensus       145 ~~~~~~~~--------~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~-~~~~~~~~  210 (321)
                      +.......        +.-|   .-.+.++.....|.+|.+.+.|+.|++|++......  ..+....... ...-..+|
T Consensus       248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp  327 (720)
T KOG0321|consen  248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP  327 (720)
T ss_pred             cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCC
Confidence            86543221        1222   123566677777888888788999999998754321  1111111111 11234789


Q ss_pred             CCCEEEEEecCCeEEEEeCCCCc-EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc
Q 020798          211 NGKFILVGTLDNTLRLWNYSTGK-ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR  277 (321)
Q Consensus       211 ~g~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (321)
                      ++.++++|+.|....+|.+.+.+ ....+.+|...+.++..+..  .-.-+++++.|-.+++|++..+
T Consensus       328 d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS--~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  328 DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS--ATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc--cCCCceeeccCcceEEEeccCc
Confidence            99999999999999999998764 35566788777766654432  3334677799999999998543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=2.9e-21  Score=162.10  Aligned_cols=242  Identities=21%  Similarity=0.377  Sum_probs=181.6

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      .+.++|+||+..|+|++|+.||+.+|+|+.|..+.+|.-.         .+-+.. -.|.+.|.|+.|+|-...|++++.
T Consensus        44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---------lEG~Lk-YSH~D~IQCMsFNP~~h~LasCsL  113 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---------LEGILK-YSHNDAIQCMSFNPITHQLASCSL  113 (1081)
T ss_pred             ccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---------ccceee-eccCCeeeEeecCchHHHhhhcch
Confidence            4778999999999999999999999999999999999421         111222 368999999999999999998875


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe---CCCCCeeEEEEccCC-
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP---AHSDPVTAVDFNRDG-  169 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~~~~~-  169 (321)
                      + ..-+|..+.....+.  .....+.+++|..||.+|+-|-.+|+|.+-+- +++..-.+.   +.+.+|++++|+|.. 
T Consensus       114 s-dFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg  189 (1081)
T KOG1538|consen  114 S-DFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSG  189 (1081)
T ss_pred             h-hccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCC
Confidence            4 467887655433221  13456889999999999999999999998864 344333333   356899999999963 


Q ss_pred             ----CEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCce
Q 020798          170 ----TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK  245 (321)
Q Consensus       170 ----~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  245 (321)
                          ..+++.....++.++.+.....-+.-  .-+-...++.+.++|.+++.|+.|+.+++|- +.|-.+.+......-+
T Consensus       190 ~G~~di~aV~DW~qTLSFy~LsG~~Igk~r--~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WI  266 (1081)
T KOG1538|consen  190 EGRNDILAVADWGQTLSFYQLSGKQIGKDR--ALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWI  266 (1081)
T ss_pred             CCccceEEEEeccceeEEEEecceeecccc--cCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeE
Confidence                36888889999999988753322111  1122345788999999999999999999997 5666666664433333


Q ss_pred             eEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          246 YCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      +.   ....|+++.++.|+.||+|..|++.
T Consensus       267 Wt---V~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  267 WT---VQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EE---EEEccCCceEEEEEccCeeehhhhH
Confidence            33   2345899999999999999999874

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.88  E-value=2.3e-21  Score=145.31  Aligned_cols=290  Identities=17%  Similarity=0.248  Sum_probs=186.7

Q ss_pred             cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccc-cccccEEEEEECCCCCEEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFT-GHEQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~~   90 (321)
                      |.+..-.|.+|...|+++.|-.+++ |.+|..-|.+++|++....        +...+. .|...|+.+.--|+ ..|.+
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r--------~~~~~r~~g~~~it~lq~~p~-d~l~t   72 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER--------DLPLIRLFGRLFITNLQSIPN-DSLDT   72 (323)
T ss_pred             CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCc--------cchhhhhhccceeeceeecCC-cchhh
Confidence            4455556669999999999987765 8899999999999987532        233344 45667888888887 45888


Q ss_pred             EeCCCcEEEEecCCcceeeeeecCcccEEEEEEC-----CCCC---E-EEEeeCCCc-EEEEecCCCEEEEEEe----CC
Q 020798           91 ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFN-----PQSN---M-IVSGAFDET-VRIWDVKTGKCLKVLP----AH  156 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~~---~-l~~~~~dg~-i~~wd~~~~~~~~~~~----~~  156 (321)
                      -+.|..+.+|++.....+..   |+-.+.++-|.     ++++   + ++.-+.... +++-|......+...+    ..
T Consensus        73 qgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~K  149 (323)
T KOG0322|consen   73 QGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSK  149 (323)
T ss_pred             cCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccc
Confidence            89999999999977543321   22222222222     2211   1 121111110 1222221111111111    12


Q ss_pred             CCCeeEEEEccC-CC--EEEEEeCCCeEEEEeCCCCceeeee---------ccCCCCCeEEEEEccCCCEEEEEecCCeE
Q 020798          157 SDPVTAVDFNRD-GT--MIVTSSYDGLCRIWDASTGHCMKTL---------IDDENPPVSFVKFSPNGKFILVGTLDNTL  224 (321)
Q Consensus       157 ~~~v~~~~~~~~-~~--~l~~~~~dg~i~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~l~~~~~d~~i  224 (321)
                      .+.+++..+..+ +.  ++++|.++|.+.+||+.++..+..+         ...+..++..+.+.+.-..=+.|+.+..+
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl  229 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL  229 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence            345555554332 22  4567778999999999886322211         22455678888888765555677778889


Q ss_pred             EEEeCCCC--cE-EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCce
Q 020798          225 RLWNYSTG--KI-LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENI  301 (321)
Q Consensus       225 ~i~d~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  301 (321)
                      ..|++...  .. ++......++  .+.-....+|++.+|+++.|+.||||..++.+.+..++.|...|++++|+|+..+
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknp--Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~l  307 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNP--GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL  307 (323)
T ss_pred             eeeeeccccCcccccceEEecCC--CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence            99987542  21 1111111111  1122223479999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCccEEEccc
Q 020798          302 IASGALDNDRTVKIWTQ  318 (321)
Q Consensus       302 l~s~~~d~~~~i~iw~~  318 (321)
                      +|++|.  |.+|.+|++
T Consensus       308 mAaask--D~rISLWkL  322 (323)
T KOG0322|consen  308 MAAASK--DARISLWKL  322 (323)
T ss_pred             hhhccC--CceEEeeec
Confidence            999995  489999985

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=1.7e-20  Score=142.43  Aligned_cols=254  Identities=22%  Similarity=0.319  Sum_probs=180.1

Q ss_pred             eeccCCcccEEEEEECCC-CCEEEEecCC-------ceEEEeeccccCCC-CCCCCCcccccc-cccccEEEEEECCCCC
Q 020798           17 QTLNGHLRAISSVKFSHD-GRLLASSSAD-------KTLLTYSLSSISNS-DSTPPSPLQKFT-GHEQGVSDLVFSSDSR   86 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~-g~~l~~~~~d-------~~v~~~~~~~~~~~-~~~~~~~~~~~~-~h~~~i~~~~~~~~~~   86 (321)
                      +.+..|.+.|..++-+|- .++|+++.++       -...+|.+.+.... ...+.+.+..+. .+-+.|.|+.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            345678899999999994 5677777552       23557877553322 122233333443 4556899999999998


Q ss_pred             EEEEEeCCCcEEEEecCCcce-eeee-----ecCcccEEEEEECC--CCCEEEEeeCCCcEEEEecCCCEEEEEE-eCCC
Q 020798           87 FLVSASDDKTIRLWDVPTATC-LKTL-----IGHTNYVFCVNFNP--QSNMIVSGAFDETVRIWDVKTGKCLKVL-PAHS  157 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~~-~~~~-----~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~  157 (321)
                      .+++-. |..|.+|++..... ...+     ..+....++-+|+|  +++.+++. .|++++.||+++.++...+ ..|.
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg  214 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG  214 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence            887654 88999999977654 2221     22455577888988  67888775 4799999999987665544 5788


Q ss_pred             CCeeEEEEccCCC-EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC-CCEEEEEecCCeEEEEeCCCC---
Q 020798          158 DPVTAVDFNRDGT-MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN-GKFILVGTLDNTLRLWNYSTG---  232 (321)
Q Consensus       158 ~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~~~d~~i~i~d~~~~---  232 (321)
                      ..+..+.|+|+.. +|++|+.||.+++||.+..+.....+.++..-+.++.|+|. .+++++++.|..+.+|....-   
T Consensus       215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE  294 (370)
T KOG1007|consen  215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE  294 (370)
T ss_pred             ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence            8899999999866 67889999999999999776655555677778999999995 567788999999999975321   


Q ss_pred             --------------------------cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          233 --------------------------KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       233 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                                                ..+.++..|...++++  .|+..+.-.+|+-+.||.+.|=.+
T Consensus       295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~--aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL--AWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             cccccccccccCcchhhHHhcccccccccccccccccceEEE--eeccCCCeeEEEeccCceEEeecC
Confidence                                      1233455566666554  344556677777788887766443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.87  E-value=1.5e-18  Score=144.92  Aligned_cols=270  Identities=9%  Similarity=0.173  Sum_probs=173.5

Q ss_pred             EEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe-CCCcEEEEecCC-cce--eeeeecC
Q 020798           39 ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS-DDKTIRLWDVPT-ATC--LKTLIGH  114 (321)
Q Consensus        39 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~--~~~~~~~  114 (321)
                      ++...++.|.+|++...     .....+..+. +......++++|++++|++++ .++.|.+|++.. ++.  .... ..
T Consensus         6 ~~~~~~~~I~~~~~~~~-----g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~   78 (330)
T PRK11028          6 IASPESQQIHVWNLNHE-----GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PL   78 (330)
T ss_pred             EEcCCCCCEEEEEECCC-----CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cC
Confidence            33467899999988421     1112223332 234567889999999887664 578899999863 332  1222 12


Q ss_pred             cccEEEEEECCCCCEEEEee-CCCcEEEEecCCC-E---EEEEEeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEeCCC
Q 020798          115 TNYVFCVNFNPQSNMIVSGA-FDETVRIWDVKTG-K---CLKVLPAHSDPVTAVDFNRDGTMIVTSS-YDGLCRIWDAST  188 (321)
Q Consensus       115 ~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~  188 (321)
                      ......++++|+++++++++ .++.|.+|++.+. .   ....+. +......++++|+++++++++ .++.|.+||+.+
T Consensus        79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            33456899999999888776 4789999998642 1   222222 223457788999998876554 679999999976


Q ss_pred             Cceeee-----eccCCCCCeEEEEEccCCCEEEEEec-CCeEEEEeCCC--Cc--EEEEEeccC----CceeEEEeEEEe
Q 020798          189 GHCMKT-----LIDDENPPVSFVKFSPNGKFILVGTL-DNTLRLWNYST--GK--ILKTYTGHT----NSKYCISSTFSV  254 (321)
Q Consensus       189 ~~~~~~-----~~~~~~~~~~~~~~~~~g~~l~~~~~-d~~i~i~d~~~--~~--~~~~~~~~~----~~~~~~~~~~~~  254 (321)
                      ...+..     ...........++|+|+|++++++.. ++.|.+|++..  ++  .+..+....    ...+... ....
T Consensus       158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-i~~~  236 (330)
T PRK11028        158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD-IHIT  236 (330)
T ss_pred             CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee-EEEC
Confidence            322211     11112334567899999999988876 89999999873  32  233332111    1112222 2234


Q ss_pred             cCCeEEEEeC-CCCeEEEEEcccce----EEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          255 TNGKYIVSGS-EDSCVYLWELQSRK----VVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       255 ~~~~~l~~~~-~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +++++++++. .++.|.+|++....    .+...... .....+.++|+|++|+++.. .++.|.+|+.+
T Consensus       237 pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~  304 (330)
T PRK11028        237 PDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQ-KSHHISVYEID  304 (330)
T ss_pred             CCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEc-cCCcEEEEEEc
Confidence            7888888875 47899999986432    22222221 23468899999999998875 36799999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.87  E-value=1.1e-20  Score=157.86  Aligned_cols=260  Identities=19%  Similarity=0.327  Sum_probs=182.6

Q ss_pred             CCCEEEE--ecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC-CCCEEEEEeCCCcEEEEecCCc-----
Q 020798           34 DGRLLAS--SSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS-DSRFLVSASDDKTIRLWDVPTA-----  105 (321)
Q Consensus        34 ~g~~l~~--~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-----  105 (321)
                      +...+|+  .+..|.|-||++.+--+   .+...+-.+. ....|.++.|.| |...|+.++.||.|++|.+..+     
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGr---LPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~  665 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGR---LPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN  665 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCC---CCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence            4455554  46688999998865221   1111111111 245689999998 6678999999999999998654     


Q ss_pred             --ceeeeeecCcccEEEEEECCC-CCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q 020798          106 --TCLKTLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR  182 (321)
Q Consensus       106 --~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  182 (321)
                        +....+.+|.+.|.++.|+|- .+.|++++.|.+|++||+++++....+.+|.+.|..++|+|+|+.+++.+.||+++
T Consensus       666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r  745 (1012)
T KOG1445|consen  666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR  745 (1012)
T ss_pred             cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence              234567889999999999995 46889999999999999999998889999999999999999999999999999999


Q ss_pred             EEeCCCCcee-eeeccCCCCCeEEEEEccCCCEEEEEecC----CeEEEEeCCCCc--EEEEEeccCCceeEEEeEEEec
Q 020798          183 IWDASTGHCM-KTLIDDENPPVSFVKFSPNGKFILVGTLD----NTLRLWNYSTGK--ILKTYTGHTNSKYCISSTFSVT  255 (321)
Q Consensus       183 ~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~~~d----~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~  255 (321)
                      +|..++.+.. ..-....+..-..+.|..+|+++++.+.|    .+|.+||.++-.  .+........+. .+.-.+..+
T Consensus       746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~D  824 (1012)
T KOG1445|consen  746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYD  824 (1012)
T ss_pred             EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-cccccccCC
Confidence            9999876432 22111222334567888999999988766    468999876533  333322211111 122223334


Q ss_pred             CCeEEEEeCCCCeEEEEEcccceE-EEEecCCCCCe--EEEEecCC
Q 020798          256 NGKYIVSGSEDSCVYLWELQSRKV-VQKLEGHTDPV--ISVASHPT  298 (321)
Q Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~h~~~v--~~~~~~p~  298 (321)
                      .+-++++|-.|..|.+|++-.... +-.+..|..++  ..++|.+.
T Consensus       825 s~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K  870 (1012)
T KOG1445|consen  825 SNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQK  870 (1012)
T ss_pred             CceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeecc
Confidence            567889999999999999854432 33344444443  34566554

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.9e-20  Score=145.23  Aligned_cols=272  Identities=21%  Similarity=0.363  Sum_probs=190.9

Q ss_pred             CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC--CCCEEEEEeCCCcEEEEecCCcceeee--e
Q 020798           36 RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS--DSRFLVSASDDKTIRLWDVPTATCLKT--L  111 (321)
Q Consensus        36 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~--~  111 (321)
                      +.+|++-..|.+++||..+        ...+..+++|...++.+.|..  ....+.+|+.||+|++||++.......  .
T Consensus        41 ~~vav~lSngsv~lyd~~t--------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~  112 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT--------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW  112 (376)
T ss_pred             eeEEEEecCCeEEEEeccc--------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec
Confidence            5688888899999998754        335677888888888999976  356788999999999999988754433  3


Q ss_pred             ecCc-ccEEEEEECCCCCEEEEee----CCCcEEEEecCCCEE-EE-EEeCCCCCeeEEEEccC-CCEEEEEeCCCeEEE
Q 020798          112 IGHT-NYVFCVNFNPQSNMIVSGA----FDETVRIWDVKTGKC-LK-VLPAHSDPVTAVDFNRD-GTMIVTSSYDGLCRI  183 (321)
Q Consensus       112 ~~~~-~~v~~~~~~~~~~~l~~~~----~dg~i~~wd~~~~~~-~~-~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~  183 (321)
                      ..+. .+..+++.+-.++.+++|.    .+-.+.+||++..+. +. ....|.+.|+++.|+|. .++|++|+-||.+.+
T Consensus       113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl  192 (376)
T KOG1188|consen  113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL  192 (376)
T ss_pred             cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe
Confidence            3444 4566777766777777764    356799999987764 33 34679999999999996 468999999999999


Q ss_pred             EeCCCCceeeee--ccCCCCCeEEEEEccCC-CEEEEEecCCeEEEEeCCCCcEEEEEeccC----------CceeEEEe
Q 020798          184 WDASTGHCMKTL--IDDENPPVSFVKFSPNG-KFILVGTLDNTLRLWNYSTGKILKTYTGHT----------NSKYCISS  250 (321)
Q Consensus       184 ~d~~~~~~~~~~--~~~~~~~~~~~~~~~~g-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~~~~~  250 (321)
                      ||+.....-..+  .-.+...|..+.|..++ +.|.+-+......+|++..+.....+....          .-.+.+..
T Consensus       193 fD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~  272 (376)
T KOG1188|consen  193 FDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE  272 (376)
T ss_pred             eecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec
Confidence            998754221111  11344568889998877 347777888899999998877544443221          11122322


Q ss_pred             EEEecCCeEEEEeCC-CCeEEEEEcc---cc---eEEEEecC-CCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          251 TFSVTNGKYIVSGSE-DSCVYLWELQ---SR---KVVQKLEG-HTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       251 ~~~~~~~~~l~~~~~-dg~i~vwd~~---~~---~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                       .++.+...++.++. -+...++-+.   ++   +.+..+.+ |..-|+++.|...+..+-|||+  ||.+.+|..
T Consensus       273 -~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE--DG~l~~Wk~  345 (376)
T KOG1188|consen  273 -HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE--DGLLQAWKV  345 (376)
T ss_pred             -ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC--CceEEEEec
Confidence             22334444444444 5666655443   22   23445555 6677899999999999999994  589999983

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.5e-19  Score=153.12  Aligned_cols=291  Identities=18%  Similarity=0.283  Sum_probs=204.9

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLW  100 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iw  100 (321)
                      .|...+++.++||.++++|+|..||.|.+|.--...    ........+.=|...|.+++|+++|.+|++|+..+.+.+|
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~----~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS----DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW  278 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccc----cccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence            477779999999999999999999999999543211    1112233455588899999999999999999999999999


Q ss_pred             ecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeC-----------CCCCeeEEEEccCC
Q 020798          101 DVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPA-----------HSDPVTAVDFNRDG  169 (321)
Q Consensus       101 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~  169 (321)
                      .+++++ .+-+..-.+.|..+.++||++..+....|..|.+....+.+....+.+           ..+-.+.++++|.-
T Consensus       279 q~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~  357 (792)
T KOG1963|consen  279 QLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT  357 (792)
T ss_pred             eecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence            999987 445566788899999999999999999999999987654443322211           12345678899977


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeecc-------C---CCCCeEEEEEccCCCEEEEEe--------cCC--eEEEEeC
Q 020798          170 TMIVTSSYDGLCRIWDASTGHCMKTLID-------D---ENPPVSFVKFSPNGKFILVGT--------LDN--TLRLWNY  229 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~---~~~~~~~~~~~~~g~~l~~~~--------~d~--~i~i~d~  229 (321)
                      +.++..+..|.+.+||+-+...+..+..       +   ..-.+..++.+..|.++++.-        .||  .+++|..
T Consensus       358 ~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~  437 (792)
T KOG1963|consen  358 NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY  437 (792)
T ss_pred             CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence            7888899999999999876543332210       0   112355666777799988863        222  5788875


Q ss_pred             CCCc----EEEEEeccCCceeEEEeEEEecCCe-EEEEeCCCCeEEEEEcccce----------EEEEecCCCCCeEEEE
Q 020798          230 STGK----ILKTYTGHTNSKYCISSTFSVTNGK-YIVSGSEDSCVYLWELQSRK----------VVQKLEGHTDPVISVA  294 (321)
Q Consensus       230 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~----------~~~~~~~h~~~v~~~~  294 (321)
                      ....    +...+....+... +..++..+... ..++++.||.+++|-+...+          +...-.-|..++++++
T Consensus       438 n~~~kt~~L~T~I~~PH~~~~-vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~  516 (792)
T KOG1963|consen  438 NPNSKTFILNTKINNPHGNAF-VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALC  516 (792)
T ss_pred             cCCcceeEEEEEEecCCCcee-EEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchh
Confidence            4332    2223322222222 33333333333 78999999999999984322          1111123778999999


Q ss_pred             ecCCCceEEEEeecCCccEEEccccc
Q 020798          295 SHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       295 ~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      |+.||..|+.+-   ++.|.|||..+
T Consensus       517 fs~dGslla~s~---~~~Itiwd~~~  539 (792)
T KOG1963|consen  517 FSQDGSLLAVSF---DDTITIWDYDT  539 (792)
T ss_pred             hcCCCcEEEEec---CCEEEEecCCC
Confidence            999998888864   36899999864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.5e-19  Score=158.79  Aligned_cols=293  Identities=20%  Similarity=0.309  Sum_probs=196.3

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC--CCCEEEEEeCCCcE
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS--DSRFLVSASDDKTI   97 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~l~~~~~d~~i   97 (321)
                      ++....-..+.|+|=...++++.....|.+||.++..........     ......|+.+.+-.  |..++++|+.||.|
T Consensus      1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~-----~~~~t~Vs~l~liNe~D~aLlLtas~dGvI 1135 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG-----AFPDTRVSDLELINEQDDALLLTASSDGVI 1135 (1387)
T ss_pred             hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCC-----CCCCCccceeeeecccchhheeeeccCceE
Confidence            344445667889998889999988889999998754321111110     01235688888754  45688999999999


Q ss_pred             EEEecCC-----cceeeeeec-------CcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC-CCCeeEEE
Q 020798           98 RLWDVPT-----ATCLKTLIG-------HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH-SDPVTAVD  164 (321)
Q Consensus        98 ~iwd~~~-----~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~  164 (321)
                      +||+-..     .+.+....+       ..+.-.-++|..+...|+++|.-..|++||.........++.. +..++++.
T Consensus      1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred             EEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence            9997321     222222211       1122234677777778888887899999999888777776543 34456665


Q ss_pred             Ec-cCCCEEEEEeCCCeEEEEeCCCCce--eeeeccCCCC--CeEEEEEccCCCE-EEEEecCCeEEEEeCCCCcEEEEE
Q 020798          165 FN-RDGTMIVTSSYDGLCRIWDASTGHC--MKTLIDDENP--PVSFVKFSPNGKF-ILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       165 ~~-~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~--~~~~~~~~~~g~~-l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      -+ +.|+.+++|-.||.+++||.+....  .......+..  +|..+.+.+.|-- |++|+.||.|++||++.......+
T Consensus      1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred             ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence            43 3468999999999999999876432  2222333433  3778888886644 999999999999999874222211


Q ss_pred             e--ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC-------CCCCeEEEEecCCCceEEEEeecC
Q 020798          239 T--GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG-------HTDPVISVASHPTENIIASGALDN  309 (321)
Q Consensus       239 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------h~~~v~~~~~~p~~~~l~s~~~d~  309 (321)
                      .  .|-.....++..........+|+|+. +.|+||++...+ +..++.       -...+.+++|||...+||+|+  .
T Consensus      1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~--~ 1371 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS--A 1371 (1387)
T ss_pred             eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhcc--C
Confidence            1  11100012445555677889999988 999999986433 222222       134679999999999999997  4


Q ss_pred             CccEEEcccccC
Q 020798          310 DRTVKIWTQEKE  321 (321)
Q Consensus       310 ~~~i~iw~~~~~  321 (321)
                      |..|.||..+|+
T Consensus      1372 Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1372 DSTVSIYSCEKP 1383 (1387)
T ss_pred             CceEEEeecCCc
Confidence            579999998764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=1.8e-20  Score=144.64  Aligned_cols=244  Identities=21%  Similarity=0.424  Sum_probs=173.7

Q ss_pred             CCcccEEEEEECCC----CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC-CEEEEEeCCC
Q 020798           21 GHLRAISSVKFSHD----GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS-RFLVSASDDK   95 (321)
Q Consensus        21 ~h~~~v~~~~~s~~----g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d~   95 (321)
                      .|.+.-..++|+-+    ..++|.|+.-|.|++.|+...        .....+.+|...|+.+.+.|+. +++++++.|.
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~  158 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDH  158 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--------hhccceeccCccchhhhcCCCCCcEEEEecCCc
Confidence            37777888888754    347899999999999987543        3345678999999999999975 6888999999


Q ss_pred             cEEEEecCCcceeeee---ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE---------------EE----
Q 020798           96 TIRLWDVPTATCLKTL---IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK---------------VL----  153 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~---------------~~----  153 (321)
                      +|++|++++..++..+   .+|...|.++.|++++.+|++++.|..|++|++...+...               .+    
T Consensus       159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~  238 (385)
T KOG1034|consen  159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK  238 (385)
T ss_pred             eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence            9999999999987655   6799999999999999999999999999999987321100               01    


Q ss_pred             ---------eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCC-CCceeee---------ec---cCCCCCeEEE--EEc
Q 020798          154 ---------PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS-TGHCMKT---------LI---DDENPPVSFV--KFS  209 (321)
Q Consensus       154 ---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~---------~~---~~~~~~~~~~--~~~  209 (321)
                               .-|...|-++.|-  |+++++-+-++.|..|... -++....         ++   .-....+..+  +|+
T Consensus       239 ~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d  316 (385)
T KOG1034|consen  239 THFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD  316 (385)
T ss_pred             cccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec
Confidence                     1133334444443  5788888888999999762 1111111         11   1112234444  556


Q ss_pred             cCCCEEEEEecCCeEEEEeCCCCcEE--EEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          210 PNGKFILVGTLDNTLRLWNYSTGKIL--KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       210 ~~g~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      |-+++|+.|...|.+.+||++...+.  .++..+. ....+.-.....|+..|+..+.|++|-=||..
T Consensus       317 ~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~-~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  317 PWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK-SGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-ccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            77899999999999999999876552  1222221 12223323334689999999999999888853

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.85  E-value=4.8e-21  Score=164.25  Aligned_cols=279  Identities=25%  Similarity=0.425  Sum_probs=212.1

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      +.|-||..+|+|+.|...|.++++|+.|..++||...+        ...+..+.||.+.|+.++.+.+.-++++++.|..
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et--------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET--------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccc--------hhhhccCCCCccccchhccchhhhhhhhcccCce
Confidence            34669999999999999999999999999999997543        3467788999999999999998889999999999


Q ss_pred             EEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE---E-eCCCCCeeEEEEccCCCEE
Q 020798           97 IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV---L-PAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~---~-~~~~~~v~~~~~~~~~~~l  172 (321)
                      |++|.+..+.++..+.+|++.|++++|+|-.    +.+.||++++||.+-...+..   . ......+-++-|...+..+
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f  331 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF  331 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence            9999999999999999999999999999954    778999999999872111110   0 0122445667777778889


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC-CCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeE
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN-GKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST  251 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  251 (321)
                      ++++.|+.-..|.......       ....+..+..+.+ ..+.+++-.+-.+.+|++.++.+++...+|....+.+.. 
T Consensus       332 ~Tgs~d~ea~n~e~~~l~~-------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~-  403 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQLAW-------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDV-  403 (1113)
T ss_pred             ccccCCcccccchhhHhhh-------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeee-
Confidence            9999999887776542111       0111111222212 245566677888999999999999999888887766543 


Q ss_pred             EEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                       .+-+.+...+++.||...|||+-.+..++.+......+...+|+++|..++..  |.-|.+.|...
T Consensus       404 -Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls--d~hgql~i~g~  467 (1113)
T KOG0644|consen  404 -HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS--DDHGQLYILGT  467 (1113)
T ss_pred             -cCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC--CCCCceEEecc
Confidence             34466777889999999999998887766554335678889999999888863  34567777543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=6.3e-19  Score=136.04  Aligned_cols=239  Identities=23%  Similarity=0.438  Sum_probs=174.1

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCcce------------eeee-ecCcccEEEEEEC-------CCCCEEEEeeC
Q 020798           76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATC------------LKTL-IGHTNYVFCVNFN-------PQSNMIVSGAF  135 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------~~~~-~~~~~~v~~~~~~-------~~~~~l~~~~~  135 (321)
                      ...+.|+|||..|++-+.|..+.+|++...-.            ...+ ......|...+|-       |+.+++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            34578999999999999999999999843110            0011 1123445555553       67788999999


Q ss_pred             CCcEEEEecCCCEEEEEEeC--CC---CCeeEEEEccCCCEEEEEeCCCeEEEEeC-CCCceee---eecc---CCCCCe
Q 020798          136 DETVRIWDVKTGKCLKVLPA--HS---DPVTAVDFNRDGTMIVTSSYDGLCRIWDA-STGHCMK---TLID---DENPPV  203 (321)
Q Consensus       136 dg~i~~wd~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~d~-~~~~~~~---~~~~---~~~~~~  203 (321)
                      +.-|++||.-+|+....+..  |.   ....+++|+|||..|++| ....|++||+ +.+....   ....   .....+
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            99999999999987766543  22   245789999999988655 5578999999 5543211   1111   223467


Q ss_pred             EEEEEccCCC-EEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeC-CCCeEEEEEcccc-eEE
Q 020798          204 SFVKFSPNGK-FILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS-EDSCVYLWELQSR-KVV  280 (321)
Q Consensus       204 ~~~~~~~~g~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~-~~~  280 (321)
                      .+++|+|... .+++++....+-||.-..+.++..+-+|.+.+..+..   -++|..|.+|+ .|-.|..||++.. ..+
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~---~edGn~lfsGaRk~dkIl~WDiR~~~~pv  287 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQW---CEDGNKLFSGARKDDKILCWDIRYSRDPV  287 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEe---ccCcCeecccccCCCeEEEEeehhccchh
Confidence            8899999654 7888998889999988888999999899887665543   36888888886 4678999999865 456


Q ss_pred             EEecCCCC-Ce--EEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          281 QKLEGHTD-PV--ISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       281 ~~~~~h~~-~v--~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ..+..|.. .-  .-....|++++||+|+  .+|.|++||.++
T Consensus       288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~--tdG~V~vwdlk~  328 (406)
T KOG2919|consen  288 YALERHVGDTNQRILFDLDPKGEILASGD--TDGSVRVWDLKD  328 (406)
T ss_pred             hhhhhhccCccceEEEecCCCCceeeccC--CCccEEEEecCC
Confidence            66766654 22  2344578999999997  458999999875

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=4.3e-19  Score=140.67  Aligned_cols=262  Identities=25%  Similarity=0.361  Sum_probs=177.3

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCC--------CCcccccccccccEEEEEECCCC
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTP--------PSPLQKFTGHEQGVSDLVFSSDS   85 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~--------~~~~~~~~~h~~~i~~~~~~~~~   85 (321)
                      .....|..|.++|++++|+|+|++||+|+.+|.+.+|............        ......+.+|...|..++|+|++
T Consensus        56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~  135 (434)
T KOG1009|consen   56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS  135 (434)
T ss_pred             EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC
Confidence            3456688999999999999999999999999999999766321110001        11223456899999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe-----------
Q 020798           86 RFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP-----------  154 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-----------  154 (321)
                      .++++++.|+.+++||+..+.....+..|...+..++|.|-+.++++-+.|...+.+.+...+.++...           
T Consensus       136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~  215 (434)
T KOG1009|consen  136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE  215 (434)
T ss_pred             ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence            999999999999999999999999999999999999999999999988888877777654332221110           


Q ss_pred             --------CCC----CCeeEEEEccCCCEEEEEeC----CC-----eEEEEeCCCC-ceeeeeccCCCCCeEEEEEc---
Q 020798          155 --------AHS----DPVTAVDFNRDGTMIVTSSY----DG-----LCRIWDASTG-HCMKTLIDDENPPVSFVKFS---  209 (321)
Q Consensus       155 --------~~~----~~v~~~~~~~~~~~l~~~~~----dg-----~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~---  209 (321)
                              .|+    .-...++|+|+|.++++...    .+     ..++|+-... ++...+ .....+...+.++   
T Consensus       216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l-p~~~k~~lavr~~pVy  294 (434)
T KOG1009|consen  216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL-PSPKKPALAVRFSPVY  294 (434)
T ss_pred             CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec-CCCCcceEEEEeeeeE
Confidence                    011    12346789999998887532    22     2344432211 111111 1111112222222   


Q ss_pred             ---------------cCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          210 ---------------PNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       210 ---------------~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                                     |-+..+++++. +.+.+||.++..++.....-.-  ..++-..+.+||..|+..+.||...+..+
T Consensus       295 ~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy--~~iTDiaws~dg~~l~vSS~DGyCS~vtf  371 (434)
T KOG1009|consen  295 YELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHY--SAITDIAWSDDGSVLLVSSTDGFCSLVTF  371 (434)
T ss_pred             EEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeee--eeecceeecCCCcEEEEeccCCceEEEEE
Confidence                           33444555554 5699999988777765543211  12333344578999999999999888777


Q ss_pred             ccceE
Q 020798          275 QSRKV  279 (321)
Q Consensus       275 ~~~~~  279 (321)
                      +..++
T Consensus       372 e~~el  376 (434)
T KOG1009|consen  372 EPWEL  376 (434)
T ss_pred             cchhc
Confidence            66554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.84  E-value=1.4e-18  Score=154.97  Aligned_cols=261  Identities=15%  Similarity=0.206  Sum_probs=182.2

Q ss_pred             eeeeeccCCcccEEEEEECCC-CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           14 TLTQTLNGHLRAISSVKFSHD-GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~-g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      .++.+|..|...|..++.+++ +.++++||.||+|++|++.+..... .......++..-...+..+...+.+..+|.++
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            467788899999999998864 5999999999999999998765532 11222333333456788999999999999999


Q ss_pred             CCCcEEEEecCCcce-------eeeeecC--cccEEEEEECC-CCC-EEEEeeCCCcEEEEecCCCEEEEEE--eCCCCC
Q 020798           93 DDKTIRLWDVPTATC-------LKTLIGH--TNYVFCVNFNP-QSN-MIVSGAFDETVRIWDVKTGKCLKVL--PAHSDP  159 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~-------~~~~~~~--~~~v~~~~~~~-~~~-~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~  159 (321)
                      .||.|++.+++-...       ......+  ...+..-++.. ... .++.+..-+.|..||++.......+  +...+.
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            999999998865211       1111112  22233333332 233 6777888889999999876543322  234468


Q ss_pred             eeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC---CCEEEEEe--cCCeEEEEeCCCCcE
Q 020798          160 VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN---GKFILVGT--LDNTLRLWNYSTGKI  234 (321)
Q Consensus       160 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~l~~~~--~d~~i~i~d~~~~~~  234 (321)
                      |++++.+|.+..++.|+..|.+.+||++-+..+..+......++..+..+|-   ....++++  ..+.|.+|++.+|..
T Consensus      1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence            9999999999999999999999999999888888877677777888777763   34555544  467899999988755


Q ss_pred             EEEEecc-CC---------------ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          235 LKTYTGH-TN---------------SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       235 ~~~~~~~-~~---------------~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      ...+-.. ..               ...+...+.....+..+.+|++|..||.||..
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            4444222 00               00111122222346688999999999999863

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=2e-18  Score=131.30  Aligned_cols=245  Identities=22%  Similarity=0.357  Sum_probs=177.3

Q ss_pred             ccccccccEEEEEECCCCC-EEEEEeCC-------CcEEEEecCCcce---------eeeee-cCcccEEEEEECCCCCE
Q 020798           68 KFTGHEQGVSDLVFSSDSR-FLVSASDD-------KTIRLWDVPTATC---------LKTLI-GHTNYVFCVNFNPQSNM  129 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~~~~-~l~~~~~d-------~~i~iwd~~~~~~---------~~~~~-~~~~~v~~~~~~~~~~~  129 (321)
                      .|..|.+.|..++-+|..+ .|+++-.+       ..+.||.++....         +..+. .+-+.+.|+.|.|++..
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            4556778899999999654 45554332       2478998865321         22222 23457899999999998


Q ss_pred             EEEeeCCCcEEEEecCCCEE-EEEEe-----CCCCCeeEEEEcc--CCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCC
Q 020798          130 IVSGAFDETVRIWDVKTGKC-LKVLP-----AHSDPVTAVDFNR--DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENP  201 (321)
Q Consensus       130 l~~~~~dg~i~~wd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  201 (321)
                      +++-. |..|.+|++..+.. ...+.     .+....++-+|+|  +++.++ ...|+++..||+++-++...+...+..
T Consensus       138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq  215 (370)
T KOG1007|consen  138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQ  215 (370)
T ss_pred             eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcc
Confidence            88765 88999999987654 33332     2455678889999  455554 556789999999988777777777888


Q ss_pred             CeEEEEEccCCCE-EEEEecCCeEEEEeCCCC-cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc--
Q 020798          202 PVSFVKFSPNGKF-ILVGTLDNTLRLWNYSTG-KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR--  277 (321)
Q Consensus       202 ~~~~~~~~~~g~~-l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--  277 (321)
                      .+..+.|+|+.++ |++++.||.|++||.+.. .++..+.+|..-++++.  |.+...+++++|++|..|.+|-+.+-  
T Consensus       216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR--fn~~hdqLiLs~~SDs~V~Lsca~svSS  293 (370)
T KOG1007|consen  216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR--FNPEHDQLILSGGSDSAVNLSCASSVSS  293 (370)
T ss_pred             eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE--ecCccceEEEecCCCceeEEEecccccc
Confidence            8999999998765 567888999999999865 46788888877666654  44556789999999999999865210  


Q ss_pred             ---------------------------eEEEEecCCCCCeEEEEecCCCce-EEEEeecCCccEEEccc
Q 020798          278 ---------------------------KVVQKLEGHTDPVISVASHPTENI-IASGALDNDRTVKIWTQ  318 (321)
Q Consensus       278 ---------------------------~~~~~~~~h~~~v~~~~~~p~~~~-l~s~~~d~~~~i~iw~~  318 (321)
                                                 .++.++..|.+.|.+++|+.-..+ +|+-|.|  |++.|=..
T Consensus       294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD--GRviIs~V  360 (370)
T KOG1007|consen  294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD--GRVIISSV  360 (370)
T ss_pred             ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC--ceEEeecC
Confidence                                       124467789999999999877665 5666654  77766443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=3.8e-19  Score=145.89  Aligned_cols=187  Identities=23%  Similarity=0.323  Sum_probs=146.5

Q ss_pred             eeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           16 TQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        16 ~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      .+...+|.+++.+-+|+|||.-|+++++||.|++|...++.+         ..+.....+|+|++|.|+.+.++.+ ..+
T Consensus        97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR---------Stl~Q~~~~v~c~~W~p~S~~vl~c-~g~  166 (737)
T KOG1524|consen   97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR---------STVVQNEESIRCARWAPNSNSIVFC-QGG  166 (737)
T ss_pred             hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH---------HHHhhcCceeEEEEECCCCCceEEe-cCC
Confidence            345678999999999999999999999999999998766543         2233345789999999988766544 334


Q ss_pred             cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE
Q 020798           96 TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      .+.|=.+..+..+-..++|.+.|.++.|++..+.+++|+.|-..++||-. |+.+..-..|+-+|++++|+|+ +.++.+
T Consensus       167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~  244 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLW  244 (737)
T ss_pred             eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeee
Confidence            56666666665566788999999999999999999999999999999965 6666666789999999999999 566665


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW  227 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~  227 (321)
                      +.+ +.++            .......+..++|++||..+++|+..|.+.+=
T Consensus       245 S~n-t~R~------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  245 SYN-TARF------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             eee-eeee------------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            543 3331            12233457889999999999999998876543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.83  E-value=5.7e-21  Score=163.83  Aligned_cols=241  Identities=28%  Similarity=0.504  Sum_probs=187.9

Q ss_pred             ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC
Q 020798           66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK  145 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  145 (321)
                      +..+.+|...|+|..|...|+++++|++|..++||.+++..++....||.+.++.++.+.++.++++++.|..|++|.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            34567899999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             CCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCC-Cce--eeeeccCCCCCeEEEEEccCCCEEEEEecCC
Q 020798          146 TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST-GHC--MKTLIDDENPPVSFVKFSPNGKFILVGTLDN  222 (321)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~  222 (321)
                      .+.++..+.+|.+.|++++|+|-.    +.+.||++++||.+- ...  ..........-+..+.|...+.-+++++.|+
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~  338 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG  338 (1113)
T ss_pred             CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence            999999999999999999999954    778999999999871 110  0001111223355667777888889999998


Q ss_pred             eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceE
Q 020798          223 TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENII  302 (321)
Q Consensus       223 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  302 (321)
                      .-..|......      .+......+  ........+.+++-.+-.+.+|++.++.+.+.+.+|..++.-+.+||-...+
T Consensus       339 ea~n~e~~~l~------~~~~~lif~--t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri  410 (1113)
T KOG0644|consen  339 EARNHEFEQLA------WRSNLLIFV--TRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI  410 (1113)
T ss_pred             ccccchhhHhh------hhccceEEE--eccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence            88777653211      111111001  1111122455666777889999999999999999999999999999988665


Q ss_pred             EEEeecCCccEEEcccc
Q 020798          303 ASGALDNDRTVKIWTQE  319 (321)
Q Consensus       303 ~s~~~d~~~~i~iw~~~  319 (321)
                      +-. ...||...|||.-
T Consensus       411 ~ms-ag~dgst~iwdi~  426 (1113)
T KOG0644|consen  411 AMS-AGYDGSTIIWDIW  426 (1113)
T ss_pred             hhh-ccCCCceEeeecc
Confidence            542 2356899999974

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.83  E-value=3.7e-18  Score=131.60  Aligned_cols=207  Identities=20%  Similarity=0.329  Sum_probs=164.7

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLW  100 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iw  100 (321)
                      --.++|+|.+|++|++.+|++-+...+.||.....     ....+..++..|...|+.+.|+|..+.|++++.|..-++|
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~-----~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA-----DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCC-----CCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence            34679999999999999999999999999976532     2245677889999999999999999999999999999999


Q ss_pred             ecCC-cc--eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEE----EEEeCCCCCeeEEEEccCCCEEE
Q 020798          101 DVPT-AT--CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCL----KVLPAHSDPVTAVDFNRDGTMIV  173 (321)
Q Consensus       101 d~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~  173 (321)
                      .... ++  ....+..++..+.++.|+|.++.|++|+....|.+|-.+..+.-    ..-+.+...|++++|+|++-+++
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla  162 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA  162 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence            9843 32  33445678889999999999999999999999999877654321    11233567789999999999999


Q ss_pred             EEeCCCeEEEEeC-----CC-------------CceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc
Q 020798          174 TSSYDGLCRIWDA-----ST-------------GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK  233 (321)
Q Consensus       174 ~~~~dg~i~~~d~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~  233 (321)
                      +|+.|+.+++|..     +.             |+.+.+. ......+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus       163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            9999999999863     11             0111111 1334567889999999999999999999999976653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.5e-18  Score=138.40  Aligned_cols=189  Identities=24%  Similarity=0.341  Sum_probs=140.8

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec-c
Q 020798          119 FCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI-D  197 (321)
Q Consensus       119 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~  197 (321)
                      .+++++++|..+++++.||++|+|+..+...+.....|...|.++.|+||+.+|++.+.| ..+||+.+++..+.... .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            678999999999999999999999977777777778899999999999999999999999 89999999986555443 2


Q ss_pred             CCCCCeEEEEEccCC---CEEEEE--ecCCeEEEEeCCCCcE---EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeE
Q 020798          198 DENPPVSFVKFSPNG---KFILVG--TLDNTLRLWNYSTGKI---LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCV  269 (321)
Q Consensus       198 ~~~~~~~~~~~~~~g---~~l~~~--~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  269 (321)
                      ..+.....+.|+.++   .+++.+  ...+.|+.||+...+.   ++..+. ......+++....++|+++|.|+.||.|
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~-~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK-IKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhh-hhccCcceeEEEcCCCcEEEEeccCCcE
Confidence            223345567777665   333222  2345666666543221   111110 0111135555566899999999999999


Q ss_pred             EEEEcccceEEEEe-cCCCCCeEEEEecCCCceEEEEeecC
Q 020798          270 YLWELQSRKVVQKL-EGHTDPVISVASHPTENIIASGALDN  309 (321)
Q Consensus       270 ~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~d~  309 (321)
                      .|++..+-+.++-. +.|...|+++.|+|+.+++++-+.|.
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~  346 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN  346 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence            99999887776655 46999999999999999999988664

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=3.3e-18  Score=147.29  Aligned_cols=234  Identities=17%  Similarity=0.163  Sum_probs=159.8

Q ss_pred             CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC---CcEEEEecCCcce--eeeeecCcccE
Q 020798           44 DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD---KTIRLWDVPTATC--LKTLIGHTNYV  118 (321)
Q Consensus        44 d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~~v  118 (321)
                      +..+.+||.....         .+.+..|...+....|+|+|+.|+.++.+   ..|++||+.+++.  +....++   .
T Consensus       183 ~~~i~i~d~dg~~---------~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~  250 (429)
T PRK01742        183 PYEVRVADYDGFN---------QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---N  250 (429)
T ss_pred             eEEEEEECCCCCC---------ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---c
Confidence            4678888764321         23456677789999999999999877644   3699999987753  2223333   3


Q ss_pred             EEEEECCCCCEEEEee-CCCcEEE--EecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEeCCCCceeee
Q 020798          119 FCVNFNPQSNMIVSGA-FDETVRI--WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS-YDGLCRIWDASTGHCMKT  194 (321)
Q Consensus       119 ~~~~~~~~~~~l~~~~-~dg~i~~--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~  194 (321)
                      ...+|+|||+.|+.+. .+|.+.+  ||+.+++. ..+..+...+....|+|+|+.++.++ .++...+|++........
T Consensus       251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~  329 (429)
T PRK01742        251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS  329 (429)
T ss_pred             CceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            4679999999887764 6776555  56665553 44555666788899999999777655 577788887643211112


Q ss_pred             eccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          195 LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       195 ~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      .... ..  ....|+|+|++|+..+.++ +.+||+.+++..........  .   ...+.++|++|+.++.++.+.+|++
T Consensus       330 ~l~~-~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~--~---~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        330 LVGG-RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLD--E---SPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             EecC-CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCC--C---CceECCCCCEEEEEEcCCCceEEEE
Confidence            2221 11  3467999999998877655 66699988865432222111  1   1223579999999998998888876


Q ss_pred             c--cceEEEEecCCCCCeEEEEecCCC
Q 020798          275 Q--SRKVVQKLEGHTDPVISVASHPTE  299 (321)
Q Consensus       275 ~--~~~~~~~~~~h~~~v~~~~~~p~~  299 (321)
                      .  +++.+.++.+|.+.+...+|+|.-
T Consensus       401 ~~~~G~~~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        401 VSADGRFKARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             EECCCCceEEccCCCCCCCCcccCCCC
Confidence            3  577788888888889999999863

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.4e-17  Score=121.87  Aligned_cols=241  Identities=19%  Similarity=0.266  Sum_probs=163.5

Q ss_pred             eccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccc--cccc-----cccEEEEEECCCCCEEEE
Q 020798           18 TLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQK--FTGH-----EQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~--~~~h-----~~~i~~~~~~~~~~~l~~   90 (321)
                      ..++|.++|+.++|.  ...|++|+ ||.|+-|...++.....  .+++..  .+-|     -..|+++...|..+-++.
T Consensus        57 ~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~--~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~  131 (325)
T KOG0649|consen   57 PEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLA--TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF  131 (325)
T ss_pred             eccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhcc--chhhhhhcCccccCcccCCccceeEeccCCCcEEE
Confidence            347999999999998  45677776 69999997765432111  111111  1112     235889999998777777


Q ss_pred             EeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCC----------Ce
Q 020798           91 ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD----------PV  160 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----------~v  160 (321)
                      ++.|+.++-||+++++....+++|++++.++..-.....+++|+.||++|+||.++++.++.+.....          .|
T Consensus       132 AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi  211 (325)
T KOG0649|consen  132 AGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI  211 (325)
T ss_pred             ecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence            88999999999999999999999999999998866667899999999999999999998877643221          23


Q ss_pred             eEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec
Q 020798          161 TAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG  240 (321)
Q Consensus       161 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~  240 (321)
                      .+++  -+...+++| ....+.+|.++..++...+.  ...++..+.|..+  .+++++..+.+.-|.+. |.+....+.
T Consensus       212 gala--~~edWlvCG-gGp~lslwhLrsse~t~vfp--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~  283 (325)
T KOG0649|consen  212 GALA--VNEDWLVCG-GGPKLSLWHLRSSESTCVFP--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPV  283 (325)
T ss_pred             EEEe--ccCceEEec-CCCceeEEeccCCCceEEEe--cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccC
Confidence            3443  345566544 45678999999887766653  2345666777544  67778877888888764 333333332


Q ss_pred             cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEE
Q 020798          241 HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd  273 (321)
                      ..  ..|....+....-+++-.++....+.|+.
T Consensus       284 ~s--~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  284 ES--TACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             Cc--cceeeecccCCceEEEEecccceeeeeee
Confidence            22  22333333222245555556666666553

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=8.6e-17  Score=134.42  Aligned_cols=241  Identities=12%  Similarity=0.207  Sum_probs=153.7

Q ss_pred             cccEEEEEECCCCCEEEEe-cCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC-CCcEEEE
Q 020798           23 LRAISSVKFSHDGRLLASS-SADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD-DKTIRLW  100 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-d~~i~iw  100 (321)
                      .+....++++|++++|+++ ..++.+.+|++.....     ........ .......++++|++++|++++. ++.|.+|
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-----l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~  107 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-----LTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVS  107 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-----eEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEE
Confidence            4567788999999988765 4578888898752100     00111111 1234578999999998887764 7899999


Q ss_pred             ecCCcc----eeeeeecCcccEEEEEECCCCCEEEEe-eCCCcEEEEecCCCEEEE-------EEeCCCCCeeEEEEccC
Q 020798          101 DVPTAT----CLKTLIGHTNYVFCVNFNPQSNMIVSG-AFDETVRIWDVKTGKCLK-------VLPAHSDPVTAVDFNRD  168 (321)
Q Consensus       101 d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~-------~~~~~~~~v~~~~~~~~  168 (321)
                      ++.+..    ....+. +......++++|++++++++ ..++.|.+||+.+...+.       ... .......++|+|+
T Consensus       108 ~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pd  185 (330)
T PRK11028        108 PLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPN  185 (330)
T ss_pred             EECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCC
Confidence            986432    122222 23346778899999988654 466999999997632221       111 1234567999999


Q ss_pred             CCEEEEEeC-CCeEEEEeCCC--Cc--eeeeecc--C---CCCCeEEEEEccCCCEEEEEec-CCeEEEEeCCCCc----
Q 020798          169 GTMIVTSSY-DGLCRIWDAST--GH--CMKTLID--D---ENPPVSFVKFSPNGKFILVGTL-DNTLRLWNYSTGK----  233 (321)
Q Consensus       169 ~~~l~~~~~-dg~i~~~d~~~--~~--~~~~~~~--~---~~~~~~~~~~~~~g~~l~~~~~-d~~i~i~d~~~~~----  233 (321)
                      +++++++.. ++.|.+||+..  +.  ....+..  .   .......+.++|+|++++++.. ++.|.+|++....    
T Consensus       186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~  265 (330)
T PRK11028        186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS  265 (330)
T ss_pred             CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence            999887765 89999999873  22  1222211  0   1111235889999999998854 7899999985432    


Q ss_pred             EEEEEeccCCceeEEEeEEEecCCeEEEEeCC-CCeEEEEEcc
Q 020798          234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSE-DSCVYLWELQ  275 (321)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~  275 (321)
                      .+........+ .   .....++|++|++++. +++|.+|++.
T Consensus       266 ~~~~~~~~~~p-~---~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        266 FEGHQPTETQP-R---GFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EeEEEeccccC-C---ceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            22222211111 1   1233468888887664 8999999875

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.3e-18  Score=138.66  Aligned_cols=195  Identities=23%  Similarity=0.338  Sum_probs=150.2

Q ss_pred             EEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 020798           27 SSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT  106 (321)
Q Consensus        27 ~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  106 (321)
                      .+++|+++|..|++|+.||.+++|+..        ...++.....|.+.|.++.|+|||++|++-+.| ..+||+..++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~P--------s~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWP--------SMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecC--------cchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence            578999999999999999999999643        334566677899999999999999999999999 89999999886


Q ss_pred             eeeeee--cCcccEEEEEECCCC---CE--EEEeeCCCcEEEEecCCCEE-----EEEEeCCCCCeeEEEEccCCCEEEE
Q 020798          107 CLKTLI--GHTNYVFCVNFNPQS---NM--IVSGAFDETVRIWDVKTGKC-----LKVLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus       107 ~~~~~~--~~~~~v~~~~~~~~~---~~--l~~~~~dg~i~~wd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      .+....  ........+.|+.++   .+  ++.....+.|+.||+....-     ..........|++++.+++|++++.
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence            554432  223345567777766   32  23334456677776532111     1111122346899999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 020798          175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       175 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~  230 (321)
                      |+.+|.|.+++..+-+........|...|+.+.|+|+.++++..+.+..+.+..+.
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            99999999999988777777777788889999999999999998888888877654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.80  E-value=2.3e-16  Score=124.02  Aligned_cols=235  Identities=14%  Similarity=0.189  Sum_probs=169.2

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEee--CCCcEEEEecCCCEEEE
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA--FDETVRIWDVKTGKCLK  151 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~  151 (321)
                      ..+..+.|+.+...|..|+.|| .++|+................|.-+-|+.  ..++..+  ....+++++++.+..+.
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEE
Confidence            3466677999998899999988 67787765433211111223344444554  3444333  33458999998887776


Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC--CCCCeEEEEEccCCCEEEEEe--cCCeEEEE
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD--ENPPVSFVKFSPNGKFILVGT--LDNTLRLW  227 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~--~d~~i~i~  227 (321)
                      .+. ...+|.++.++.+  .|+++-.+. |++||+++-+.+.++..-  ....+..+.+++.+.+++.-+  ..|.|.+|
T Consensus        83 e~~-fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   83 EIF-FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             EEe-cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence            654 3567888888754  566666655 999999987777766443  222344455555666887643  46899999


Q ss_pred             eCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCe-EEEEEcccceEEEEecCCC--CCeEEEEecCCCceEEE
Q 020798          228 NYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSC-VYLWELQSRKVVQKLEGHT--DPVISVASHPTENIIAS  304 (321)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s  304 (321)
                      |+.+-+.+..+..|.++..++   ...++|.+|||++..|+ ||||.+.+++.+.+++--.  ..|.+++|+|++.+|++
T Consensus       159 d~~nl~~v~~I~aH~~~lAal---afs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  159 DTINLQPVNTINAHKGPLAAL---AFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             EcccceeeeEEEecCCceeEE---EECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            999999999999998876554   44589999999999997 6999999999988876433  46889999999999998


Q ss_pred             EeecCCccEEEccccc
Q 020798          305 GALDNDRTVKIWTQEK  320 (321)
Q Consensus       305 ~~~d~~~~i~iw~~~~  320 (321)
                      .|  +.++|.|+.+++
T Consensus       236 sS--~TeTVHiFKL~~  249 (391)
T KOG2110|consen  236 SS--NTETVHIFKLEK  249 (391)
T ss_pred             ec--CCCeEEEEEecc
Confidence            87  568999998875

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=8.9e-17  Score=139.16  Aligned_cols=300  Identities=19%  Similarity=0.285  Sum_probs=205.6

Q ss_pred             eeeccCCcccEEEEEECCCCC---EEEEecCCceEEEeeccccCCCCCC---------------------------CCC-
Q 020798           16 TQTLNGHLRAISSVKFSHDGR---LLASSSADKTLLTYSLSSISNSDST---------------------------PPS-   64 (321)
Q Consensus        16 ~~~~~~h~~~v~~~~~s~~g~---~l~~~~~d~~v~~~~~~~~~~~~~~---------------------------~~~-   64 (321)
                      .+.|.+|..+++.+.+.|...   ++.+++.||.|++|+.....-....                           ... 
T Consensus        50 i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~  129 (792)
T KOG1963|consen   50 ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSI  129 (792)
T ss_pred             hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeeccccee
Confidence            346789999999999988654   6789999999999987543200000                           000 


Q ss_pred             -----------------------cccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceee----eeecCccc
Q 020798           65 -----------------------PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLK----TLIGHTNY  117 (321)
Q Consensus        65 -----------------------~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~  117 (321)
                                             +...+..|.. -..+.+++.|.+.+..- +..+.+|+..+.....    .-..|.-.
T Consensus       130 ~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~  207 (792)
T KOG1963|consen  130 LTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFN  207 (792)
T ss_pred             eeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhccc
Confidence                                   0000011111 24566666666554443 3457788877644110    11346666


Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEecCC--C--EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceee
Q 020798          118 VFCVNFNPQSNMIVSGAFDETVRIWDVKT--G--KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK  193 (321)
Q Consensus       118 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  193 (321)
                      +.+.+++|++++++++..||.|.+|.--.  +  .....+.=|..+|++++|+++|.+|++|+..+.+.+|.+.+++  +
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--k  285 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--K  285 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--c
Confidence            89999999999999999999999996322  1  1233455678899999999999999999999999999999877  5


Q ss_pred             eeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCc-------eeEE-EeEEEecCCeEEEEeCC
Q 020798          194 TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS-------KYCI-SSTFSVTNGKYIVSGSE  265 (321)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~l~~~~~  265 (321)
                      +++..-+.++..+.++||+.+.++...|+.|.+....+......+.+....       ..++ ......|..+.++-.+.
T Consensus       286 qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~  365 (792)
T KOG1963|consen  286 QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH  365 (792)
T ss_pred             ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence            566666788999999999999999999999999988766554444332211       1111 11122233455666788


Q ss_pred             CCeEEEEEcccceEEEEec-----C------CCCCeEEEEecCCCceEEEEe--------ecCCccEEEcccc
Q 020798          266 DSCVYLWELQSRKVVQKLE-----G------HTDPVISVASHPTENIIASGA--------LDNDRTVKIWTQE  319 (321)
Q Consensus       266 dg~i~vwd~~~~~~~~~~~-----~------h~~~v~~~~~~p~~~~l~s~~--------~d~~~~i~iw~~~  319 (321)
                      .|.|.+||+.+.+.+.++.     .      +...++.++.+-.|++++|.-        .|+.-.+|+|..+
T Consensus       366 ~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  366 PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            9999999998877665542     1      223578888888899999973        2333468888764

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.80  E-value=9.2e-17  Score=138.18  Aligned_cols=263  Identities=16%  Similarity=0.186  Sum_probs=180.7

Q ss_pred             ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-CCEEEEEeCCCcEEEEecCCcce--ee----eeecCccc
Q 020798           45 KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATC--LK----TLIGHTNY  117 (321)
Q Consensus        45 ~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~--~~----~~~~~~~~  117 (321)
                      +.+.+|++...       ..|...+. -...|.++.|+|. ..+++.|+.+|+|.+||+..+..  ..    ....|..+
T Consensus       222 ~~~~vW~~~~p-------~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~  293 (555)
T KOG1587|consen  222 GVLLVWSLKNP-------NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP  293 (555)
T ss_pred             ceEEEEecCCC-------CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence            35777776532       22323332 3467999999995 56788899999999999977653  11    22458889


Q ss_pred             EEEEEECCCC--CEEEEeeCCCcEEEEecCCCEEE------EEEe------CCCCCeeEEEEccC-CCEEEEEeCCCeEE
Q 020798          118 VFCVNFNPQS--NMIVSGAFDETVRIWDVKTGKCL------KVLP------AHSDPVTAVDFNRD-GTMIVTSSYDGLCR  182 (321)
Q Consensus       118 v~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~~~~------~~~~------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~  182 (321)
                      +..+.|..+.  ..|++++.||.|..|+++.-...      ....      .....+++++|.+. -..|+.|+.+|.|.
T Consensus       294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~  373 (555)
T KOG1587|consen  294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY  373 (555)
T ss_pred             eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence            9999986643  45999999999999987642211      0011      11245788999885 45789999999887


Q ss_pred             EEe---CCCCc----eeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC-CCcEEEEEeccCCceeEEEeEEEe
Q 020798          183 IWD---ASTGH----CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS-TGKILKTYTGHTNSKYCISSTFSV  254 (321)
Q Consensus       183 ~~d---~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~  254 (321)
                      --.   .+...    ........+..++..+.++|=+..++..+.|-.++||... ...++..+..+...  .....|++
T Consensus       374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~--v~~vaWSp  451 (555)
T KOG1587|consen  374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY--VTDVAWSP  451 (555)
T ss_pred             EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce--eeeeEEcC
Confidence            632   22222    0111223455678999999987777666669999999976 55555555443332  33445666


Q ss_pred             cCCeEEEEeCCCCeEEEEEcccc--eEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          255 TNGKYIVSGSEDSCVYLWELQSR--KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .....++++..||.|.+||+...  +.+...+-+....+.+.|++.|+.|+.|.  ..|.+.+|++.
T Consensus       452 trpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd--~~G~~~~~~l~  516 (555)
T KOG1587|consen  452 TRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD--ANGTTHILKLS  516 (555)
T ss_pred             cCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEec--CCCcEEEEEcC
Confidence            66788999999999999999654  33444444566778888999999999985  56899999873

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.79  E-value=2.6e-17  Score=125.41  Aligned_cols=242  Identities=20%  Similarity=0.341  Sum_probs=170.4

Q ss_pred             cEEEEEECC--C-CCEEEEEeC----CCcEEEEec--CCcceee-eeecCcccEEEEEECCCC-----CEEEEeeCCCcE
Q 020798           75 GVSDLVFSS--D-SRFLVSASD----DKTIRLWDV--PTATCLK-TLIGHTNYVFCVNFNPQS-----NMIVSGAFDETV  139 (321)
Q Consensus        75 ~i~~~~~~~--~-~~~l~~~~~----d~~i~iwd~--~~~~~~~-~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i  139 (321)
                      .++++.|+.  + +.+|+.|+-    .+.|.|-.+  ++++.+. ....|.-+++.+.|.|+.     ..|++++  ..+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L  123 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL  123 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence            467788873  3 346777763    345666544  3333322 224677889999999975     3455544  579


Q ss_pred             EEEecCCCEE----EEE-----EeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEeCCCCce--eeeeccCCCCCeEEEE
Q 020798          140 RIWDVKTGKC----LKV-----LPAHSDPVTAVDFNR-DGTMIVTSSYDGLCRIWDASTGHC--MKTLIDDENPPVSFVK  207 (321)
Q Consensus       140 ~~wd~~~~~~----~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~~~~  207 (321)
                      |+|.+...+.    ...     -..+..+++++.|+. +-+++.+++-|-++.+||+.++..  +++.+-.|...|..++
T Consensus       124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa  203 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA  203 (364)
T ss_pred             EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence            9998863211    111     123567899999986 456788999999999999998633  5566667888899999


Q ss_pred             EccCC-CEEEEEecCCeEEEEeCCCCcEEEE-EeccCCceeEEEeEEEecCCeEEEEeCCC-CeEEEEEcccc-eEEEEe
Q 020798          208 FSPNG-KFILVGTLDNTLRLWNYSTGKILKT-YTGHTNSKYCISSTFSVTNGKYIVSGSED-SCVYLWELQSR-KVVQKL  283 (321)
Q Consensus       208 ~~~~g-~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~-~~~~~~  283 (321)
                      |...+ +.+++.+.||.+|+||++..+.-.. ++.......-+...+...|-.++|+-..| ..|.+.|++.. ..+.++
T Consensus       204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L  283 (364)
T KOG0290|consen  204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL  283 (364)
T ss_pred             eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence            99865 4677889999999999987654333 23222122334555666777888876554 46889999876 457889


Q ss_pred             cCCCCCeEEEEecCCC-ceEEEEeecCCccEEEccccc
Q 020798          284 EGHTDPVISVASHPTE-NIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       284 ~~h~~~v~~~~~~p~~-~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .+|...|++++|.|.. ..|.++|  +|..+.|||+..
T Consensus       284 ~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q  319 (364)
T KOG0290|consen  284 RNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQ  319 (364)
T ss_pred             hcCcccccceEecCCCCceeeecC--CcceEEEEeccc
Confidence            9999999999999985 6788887  458899999853

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=2.4e-17  Score=135.46  Aligned_cols=269  Identities=14%  Similarity=0.180  Sum_probs=179.1

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEE
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRL   99 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~i   99 (321)
                      +.|.+-|-|+.|+.+...+.+++.+..++.|++..........+...-...-|-.+ .+..=-.....|+.++.||.+.+
T Consensus        11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~-rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGG-RSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             cccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccc-cccCCCCCcceEEEEcCCceEEE
Confidence            35777788999998888888887776666666654221111000000000011000 00000012346888899999998


Q ss_pred             EecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC
Q 020798          100 WDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG  179 (321)
Q Consensus       100 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  179 (321)
                      .+ ..++..+.+.+|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-...++.....+|.+++|.|+.+.++.+.. +
T Consensus        90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~  166 (737)
T KOG1524|consen   90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-G  166 (737)
T ss_pred             ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-C
Confidence            87 34556677889999999999999999999999999999998 567666666667789999999999876655543 4


Q ss_pred             eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeE
Q 020798          180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY  259 (321)
Q Consensus       180 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (321)
                      .+.+=.+.....+-++ ..|...+.++.|++..+.+++|+.|...++||.. |..+..-..|..+   +++..+.|+ ..
T Consensus       167 h~~IKpL~~n~k~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~---ITSva~npd-~~  240 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA---ITSVAFNPE-KD  240 (737)
T ss_pred             eEEEeecccccceeEE-eccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc---eeeeeeccc-cc
Confidence            4555555443333333 3567778999999999999999999999999954 4455444444444   444444455 44


Q ss_pred             EEEeCCCCeEEEEEcccceEEEEec-CCCCCeEEEEecCCCceEEEEeecCCccE
Q 020798          260 IVSGSEDSCVYLWELQSRKVVQKLE-GHTDPVISVASHPTENIIASGALDNDRTV  313 (321)
Q Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~~d~~~~i  313 (321)
                      ++.++. .++|            +. ...+.|..++|+|||..++.|.  +.|.+
T Consensus       241 ~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt--~~G~v  280 (737)
T KOG1524|consen  241 YLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQATCGT--STGQL  280 (737)
T ss_pred             eeeeee-eeee------------ecCCCccceEEEEEcCCCceeeccc--cCceE
Confidence            554443 2333            22 2356899999999999999886  34544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.2e-18  Score=141.83  Aligned_cols=211  Identities=22%  Similarity=0.373  Sum_probs=156.9

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcc-cccccccccEEEEEECCC--CCEEEE
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPL-QKFTGHEQGVSDLVFSSD--SRFLVS   90 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~--~~~l~~   90 (321)
                      .+.+.|.||.+-|.|++|+.+|.+|++||.|-.+.+||....        +++ ..-++|.+.|.++.|-|.  .+.+++
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--------KllhsI~TgHtaNIFsvKFvP~tnnriv~s  112 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--------KLLHSISTGHTANIFSVKFVPYTNNRIVLS  112 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhc--------ceeeeeecccccceeEEeeeccCCCeEEEe
Confidence            355778999999999999999999999999999999986532        122 234689999999999984  568899


Q ss_pred             EeCCCcEEEEecCCc----------ceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEE-EEEEeC---
Q 020798           91 ASDDKTIRLWDVPTA----------TCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKC-LKVLPA---  155 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~-~~~~~~---  155 (321)
                      |..|..|+++|+...          +....+..|...|..++..|++ +.+.+++.||+|+-+|++.... ......   
T Consensus       113 gAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~  192 (758)
T KOG1310|consen  113 GAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI  192 (758)
T ss_pred             ccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence            999999999999742          2234456788999999999988 8899999999999999986421 111101   


Q ss_pred             ------CCCCeeEEEEccCCC-EEEEEeCCCeEEEEeCCC--------Cc----------eeeeeccCCC----------
Q 020798          156 ------HSDPVTAVDFNRDGT-MIVTSSYDGLCRIWDAST--------GH----------CMKTLIDDEN----------  200 (321)
Q Consensus       156 ------~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~--------~~----------~~~~~~~~~~----------  200 (321)
                            .--...++..+|... +|++|+.|-..++||.+.        +.          ++..+...+-          
T Consensus       193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~  272 (758)
T KOG1310|consen  193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRY  272 (758)
T ss_pred             HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccc
Confidence                  112356788898754 788899999999999431        10          1111111110          


Q ss_pred             -CCeEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 020798          201 -PPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG  232 (321)
Q Consensus       201 -~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~  232 (321)
                       ...+.+.|+|+|..|++.-....|+++|+..+
T Consensus       273 ~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  273 ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence             12567899999999988777778999998654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=7.5e-17  Score=142.20  Aligned_cols=244  Identities=19%  Similarity=0.302  Sum_probs=172.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecC---cccEEEEEECC--CCCEEEEeeCCCcEEEEecC----
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGH---TNYVFCVNFNP--QSNMIVSGAFDETVRIWDVK----  145 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~----  145 (321)
                      ....+.|+|-...++++...-.|++||.+.++.+..+..+   ...|+.+.+-.  |...+++|+.||.|++|+--    
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            3567889998888998887788999999999887665433   34577777643  44678999999999999742    


Q ss_pred             -CCEEEEEEeC-------CCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEc-cCCCEEE
Q 020798          146 -TGKCLKVLPA-------HSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFS-PNGKFIL  216 (321)
Q Consensus       146 -~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~l~  216 (321)
                       +.+.+..+..       ..+.-.-++|.....+|++++.-..|++||.........+.......++.+.-+ +.|+.++
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence             2233332211       112224567877777788887788999999998877777665555566655433 3579999


Q ss_pred             EEecCCeEEEEeCCCCc---EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEE--EEecCCC---C
Q 020798          217 VGTLDNTLRLWNYSTGK---ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV--QKLEGHT---D  288 (321)
Q Consensus       217 ~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~h~---~  288 (321)
                      +|..||.|++||.+...   .+..+..|......+...+....-..|++|+.||.|++||++.....  -.+..|-   +
T Consensus      1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred             EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc
Confidence            99999999999987543   46666677655223333333322236999999999999999874221  2223332   3


Q ss_pred             CeEEEEecCCCceEEEEeecCCccEEEcccccC
Q 020798          289 PVISVASHPTENIIASGALDNDRTVKIWTQEKE  321 (321)
Q Consensus       289 ~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~~  321 (321)
                      .++++..|++..++|+|+.   +.|+||+...|
T Consensus      1306 ~lTal~VH~hapiiAsGs~---q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA---QLIKIYSLSGE 1335 (1387)
T ss_pred             cceeeeeccCCCeeeecCc---ceEEEEecChh
Confidence            5999999999999999973   68999998653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=1.6e-17  Score=126.51  Aligned_cols=205  Identities=19%  Similarity=0.296  Sum_probs=153.7

Q ss_pred             CCcccEEEEEECCCC-----CEEEEecCCceEEEeeccccCCCCCCCCCcccc-----cccccccEEEEEECC-CCCEEE
Q 020798           21 GHLRAISSVKFSHDG-----RLLASSSADKTLLTYSLSSISNSDSTPPSPLQK-----FTGHEQGVSDLVFSS-DSRFLV   89 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g-----~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~i~~~~~~~-~~~~l~   89 (321)
                      .|..+++.+-|.|+.     .+||+++  ..+++|.+...+.    +..+...     -..+..++++..|+. +-+++.
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~----~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ig  167 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEES----RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIG  167 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCC----ceehhhhhccCcccccCCcccccccccCCcceeE
Confidence            688999999999986     3566654  5799998764321    1111111     123567899999986 567889


Q ss_pred             EEeCCCcEEEEecCCcc---eeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEE---EEEEeCCCCCeeE
Q 020798           90 SASDDKTIRLWDVPTAT---CLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKC---LKVLPAHSDPVTA  162 (321)
Q Consensus        90 ~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~  162 (321)
                      +++.|.+..|||++++.   ....+.+|...|..++|...+ +.|++.+.||.+|+||++.-+-   +..-+....+...
T Consensus       168 tSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR  247 (364)
T KOG0290|consen  168 TSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR  247 (364)
T ss_pred             eecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee
Confidence            99999999999998863   355678999999999999865 4689999999999999986542   2222333567788


Q ss_pred             EEEccCC-CEEEEEeC-CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC-CCEEEEEecCCeEEEEeCCC
Q 020798          163 VDFNRDG-TMIVTSSY-DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN-GKFILVGTLDNTLRLWNYST  231 (321)
Q Consensus       163 ~~~~~~~-~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~~~d~~i~i~d~~~  231 (321)
                      ++|+++. +++++-.. ...|.+.|++.......-+..|...|+.++|.|. ...|.+++.|.++.+||+..
T Consensus       248 LswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  248 LSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             eccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            9998854 45666444 4578899999765444445678889999999995 56788999999999999864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=1.7e-16  Score=136.50  Aligned_cols=247  Identities=20%  Similarity=0.244  Sum_probs=170.3

Q ss_pred             cccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcc-cccccccccEEEEEECCCCCE--EEEEeCCCcEE
Q 020798           23 LRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPL-QKFTGHEQGVSDLVFSSDSRF--LVSASDDKTIR   98 (321)
Q Consensus        23 ~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~~~~--l~~~~~d~~i~   98 (321)
                      ..+|+|+.|+| +..+++.|..+|.|.+||+.......   ..++ .....|..++..+.|..+..-  +++++.||.|.
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~  318 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC  318 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence            56899999998 56788999999999999997643311   1111 223468899999999775444  89999999999


Q ss_pred             EEecCCcce-e-----eeee------cCcccEEEEEECCC-CCEEEEeeCCCcEEEEecC---CCE-----EEEEEeCCC
Q 020798           99 LWDVPTATC-L-----KTLI------GHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVK---TGK-----CLKVLPAHS  157 (321)
Q Consensus        99 iwd~~~~~~-~-----~~~~------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~---~~~-----~~~~~~~~~  157 (321)
                      .|+++.-.. .     ....      .-...+++++|.+. .+.|+.|+..|.|..-.-.   ...     ....+..|.
T Consensus       319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~  398 (555)
T KOG1587|consen  319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI  398 (555)
T ss_pred             eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence            998754322 0     0001      11234778888774 4678999999998763322   211     123455788


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCeEEEEeCC-CCceeeeeccCCCCCeEEEEEccCCCE-EEEEecCCeEEEEeCCCCc--
Q 020798          158 DPVTAVDFNRDGTMIVTSSYDGLCRIWDAS-TGHCMKTLIDDENPPVSFVKFSPNGKF-ILVGTLDNTLRLWNYSTGK--  233 (321)
Q Consensus       158 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~~~d~~i~i~d~~~~~--  233 (321)
                      ++|.++.++|=+..++..+.|-++++|.-. ...++.. ...+...+..++|+|.... ++++..||.|.+||+....  
T Consensus       399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~-~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~  477 (555)
T KOG1587|consen  399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS-LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE  477 (555)
T ss_pred             cceEeeecCCCccceeeeeccceeEeccccCCCCcchh-hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence            999999999987766655559999999876 3322222 2233344889999998755 5566779999999986533  


Q ss_pred             EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      ++.+....   ...+...+..+.|+.|++|...|.+.+|++..
T Consensus       478 Pv~s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  478 PVLSQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             Cccccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            33333222   12233445567799999999999999999853

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.78  E-value=1.2e-18  Score=140.53  Aligned_cols=264  Identities=18%  Similarity=0.293  Sum_probs=196.4

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT  104 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  104 (321)
                      +-+.+.|+.+|+.|+.|+..|.+-.+|.....-        ...+ .-...|.++.|-.+.+++|++ ....+.|||- .
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--------~~Ei-~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~  199 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--------HFEI-NVMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-N  199 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeeccccee--------eeee-ehhhhhhhhhhhcchHHHHhh-hhceEEEecC-C
Confidence            455789999999999999999999988754321        1111 113468889999988888766 5567999994 4


Q ss_pred             cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 020798          105 ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW  184 (321)
Q Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  184 (321)
                      +..++.+..|. .+..+.|-|-.-.|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|...|+|.+|
T Consensus       200 GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW  278 (545)
T KOG1272|consen  200 GTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW  278 (545)
T ss_pred             CcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence            55567766554 47789999988888999999999999999999988887778888899999999999999999999999


Q ss_pred             eCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeC
Q 020798          185 DASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS  264 (321)
Q Consensus       185 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (321)
                      .....+++..++ .+..+|..+++.++|+++++++.|..++|||++.-..+.++.... +...++  + ++ -. +++.+
T Consensus       279 SP~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~-~a~~ls--~-Sq-kg-lLA~~  351 (545)
T KOG1272|consen  279 SPNSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH-PASNLS--L-SQ-KG-LLALS  351 (545)
T ss_pred             CCCCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC-Cccccc--c-cc-cc-ceeee
Confidence            998877666654 456789999999999999999999999999999876655554311 111121  1 12 22 34445


Q ss_pred             CCCeEEEEEcc-c--ceEEEEecCC--CCCeEEEEecCCCceEEEEee
Q 020798          265 EDSCVYLWELQ-S--RKVVQKLEGH--TDPVISVASHPTENIIASGAL  307 (321)
Q Consensus       265 ~dg~i~vwd~~-~--~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~  307 (321)
                      ....|.+|.-. .  +.....+-.|  ..+|.++.|.|.++.|-.|..
T Consensus       352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~  399 (545)
T KOG1272|consen  352 YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHA  399 (545)
T ss_pred             cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeecccc
Confidence            55679999532 2  1222222233  358999999999888877653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.76  E-value=1.5e-14  Score=121.07  Aligned_cols=275  Identities=17%  Similarity=0.220  Sum_probs=175.4

Q ss_pred             CEE-EEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecC
Q 020798           36 RLL-ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGH  114 (321)
Q Consensus        36 ~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  114 (321)
                      +++ ++-..++.+.+.|...        .+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.++..-
T Consensus         6 ~l~~V~~~~~~~v~viD~~t--------~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G   77 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGAT--------NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG   77 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT---------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S
T ss_pred             cEEEEEecCCCEEEEEECCC--------CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC
Confidence            344 4456678888887643        2334455443333345789999999999999999999999999988887643


Q ss_pred             cccEEEEEECCCCCEEEEee-CCCcEEEEecCCCEEEEEEeCC-------CCCeeEEEEccCCCEEEEEeC-CCeEEEEe
Q 020798          115 TNYVFCVNFNPQSNMIVSGA-FDETVRIWDVKTGKCLKVLPAH-------SDPVTAVDFNRDGTMIVTSSY-DGLCRIWD  185 (321)
Q Consensus       115 ~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d  185 (321)
                       .....+++++||++++++. .++.+.++|.++.+.++.++..       ...+..+..+|....++..-. .+.|.+.|
T Consensus        78 -~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   78 -GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             -SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             -CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence             3467899999999987664 6899999999999888877543       345667777888886666655 47888888


Q ss_pred             CCCCceeeeeccCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEeCCCCcEEEEEec----c---------CCc--eeE--
Q 020798          186 ASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-TLDNTLRLWNYSTGKILKTYTG----H---------TNS--KYC--  247 (321)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~d~~i~i~d~~~~~~~~~~~~----~---------~~~--~~~--  247 (321)
                      ....+.................|+|++++++++ ..++.|-++|.++++.+..+..    |         ...  .+.  
T Consensus       157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~  236 (369)
T PF02239_consen  157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS  236 (369)
T ss_dssp             TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred             eccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence            776543332222234456678999999998775 4567899999888766544321    0         000  000  


Q ss_pred             ----------------------------E------EeEEEecCCeEEEEe----CCCCeEEEEEcccceEEEEecCC-CC
Q 020798          248 ----------------------------I------SSTFSVTNGKYIVSG----SEDSCVYLWELQSRKVVQKLEGH-TD  288 (321)
Q Consensus       248 ----------------------------~------~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~~~~~~~~~h-~~  288 (321)
                                                  +      .+....|+++++.+.    ...+.|.++|.++.+.+..+... ..
T Consensus       237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~  316 (369)
T PF02239_consen  237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK  316 (369)
T ss_dssp             BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-
T ss_pred             cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC
Confidence                                        0      012234677777776    45589999999998887777532 23


Q ss_pred             CeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          289 PVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       289 ~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .+..+.|+++|+++-....+.++.|.+||.+
T Consensus       317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             -EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred             cEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence            5899999999998877777877799999874

...

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.4e-16  Score=126.31  Aligned_cols=248  Identities=19%  Similarity=0.287  Sum_probs=174.0

Q ss_pred             ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC------cceeeee-ecCcccEEEEEECCCCCEEEEeeCCCc
Q 020798           66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT------ATCLKTL-IGHTNYVFCVNFNPQSNMIVSGAFDET  138 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~  138 (321)
                      ...+.+|.+.|.++.|+.++++|++|+.|..+++|+++.      .+++... ..|...|+|++|+..+.++++|+.+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            345678999999999999999999999999999999753      2333322 235578999999999999999999999


Q ss_pred             EEEEecCCCEEEEEEeC--CCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCcee-ee-eccCCCCCeEEEEEccCCC-
Q 020798          139 VRIWDVKTGKCLKVLPA--HSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM-KT-LIDDENPPVSFVKFSPNGK-  213 (321)
Q Consensus       139 i~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~-  213 (321)
                      |...|+.+.+.+..+..  ..+.|..+..+|..+.|++.+.++.|.+||.+..+.. .. ...........+.|+|... 
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            99999999887766532  2248999999999999999999999999999864421 11 1122234456678999654 


Q ss_pred             EEEEEecCCeEEEEeCCCCcE-EEEEeccCCc---e-eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEE-EEecCCC
Q 020798          214 FILVGTLDNTLRLWNYSTGKI-LKTYTGHTNS---K-YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV-QKLEGHT  287 (321)
Q Consensus       214 ~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~h~  287 (321)
                      +|++.+..+-+.+||.+.... +..+.+..+.   . --+...|. ++|..|++--....-.+||+.+.++. .+.. |.
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~-~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N  286 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS-PSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HN  286 (609)
T ss_pred             eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC-CCCCeehhhhccCCCEEeeeecccceeEecc-CC
Confidence            566777788899999876431 2111111111   0 01233343 56777776655556678898876543 2222 32


Q ss_pred             -------CCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          288 -------DPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       288 -------~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                             ..+.+++|-.|.. +++||.  +=.|++|.+
T Consensus       287 ~~GY~N~~T~KS~~F~~D~~-v~tGSD--~~~i~~Wkl  321 (609)
T KOG4227|consen  287 PNGYCNIKTIKSMTFIDDYT-VATGSD--HWGIHIWKL  321 (609)
T ss_pred             CCcceeeeeeeeeeeeccee-eeccCc--ccceEEEec
Confidence                   2577888875554 888873  356999986

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.7e-17  Score=135.51  Aligned_cols=216  Identities=25%  Similarity=0.445  Sum_probs=156.4

Q ss_pred             cccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeee-ecCcccEEEEEECCC--CCEEEEeeCCCcEEE
Q 020798           65 PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTL-IGHTNYVFCVNFNPQ--SNMIVSGAFDETVRI  141 (321)
Q Consensus        65 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~  141 (321)
                      ..+.+.||.+.|+++.|+.+|.+|++|+.|-.+.|||....+.+..+ .+|...|+++.|-|.  ++.+++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            34578899999999999999999999999999999998877776665 689999999999984  467899999999999


Q ss_pred             EecCCC----------EEEEEEeCCCCCeeEEEEccCC-CEEEEEeCCCeEEEEeCCCCceee-------eecc--CCCC
Q 020798          142 WDVKTG----------KCLKVLPAHSDPVTAVDFNRDG-TMIVTSSYDGLCRIWDASTGHCMK-------TLID--DENP  201 (321)
Q Consensus       142 wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~-------~~~~--~~~~  201 (321)
                      +|+...          +....+..|...|..++-.|++ ..+.++++||+++-+|++....-.       .+..  ..--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            998741          2334456788899999999988 678899999999999998642111       0100  1112


Q ss_pred             CeEEEEEccCC-CEEEEEecCCeEEEEeCCC--------Cc----------EEEEEe-ccC--------CceeEEEeEEE
Q 020798          202 PVSFVKFSPNG-KFILVGTLDNTLRLWNYST--------GK----------ILKTYT-GHT--------NSKYCISSTFS  253 (321)
Q Consensus       202 ~~~~~~~~~~g-~~l~~~~~d~~i~i~d~~~--------~~----------~~~~~~-~~~--------~~~~~~~~~~~  253 (321)
                      ...++.++|.. .+|++|+.|-..++||.+.        +.          .+..+. +|.        ....++....+
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            34578888864 5678899999999999432        10          122221 111        11233444455


Q ss_pred             ecCCeEEEEeCCCCeEEEEEcccceEE
Q 020798          254 VTNGKYIVSGSEDSCVYLWELQSRKVV  280 (321)
Q Consensus       254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (321)
                      .|+|.-|+..-..-.|++||+...+.+
T Consensus       282 npNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  282 NPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             CCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            677766655544557999999776543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=1.6e-16  Score=136.94  Aligned_cols=210  Identities=19%  Similarity=0.225  Sum_probs=141.9

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCC---ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe-
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSAD---KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS-   92 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~-   92 (321)
                      +.+..|...+..++|||||++|+.++.+   ..|.+|++....      ...+..+.+|   ...++|+|||+.|+.++ 
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~------~~~l~~~~g~---~~~~~wSPDG~~La~~~~  267 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA------RKVVASFRGH---NGAPAFSPDGSRLAFASS  267 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc------eEEEecCCCc---cCceeECCCCCEEEEEEe
Confidence            4466788889999999999999987654   368889875321      1122233333   33689999999888764 


Q ss_pred             CCCcEEEE--ecCCcceeeeeecCcccEEEEEECCCCCEEEEee-CCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEccC
Q 020798           93 DDKTIRLW--DVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA-FDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        93 ~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      .+|.+.||  |+.++. ...+..+...+....|+|||+.|+.++ .++..++|++... .....+ .+..  ....|+|+
T Consensus       268 ~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpD  343 (429)
T PRK01742        268 KDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISAD  343 (429)
T ss_pred             cCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCC
Confidence            67876655  665554 344555666678899999999776544 5777888876432 122222 2332  45789999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC--CCCcEEEEEeccCC
Q 020798          169 GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY--STGKILKTYTGHTN  243 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~  243 (321)
                      ++.++..+.++ +.+||+.+++... +...  .......|+|+|++|+.++.++...+|++  .+++.+..+..+.+
T Consensus       344 G~~ia~~~~~~-i~~~Dl~~g~~~~-lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g  416 (429)
T PRK01742        344 GKTLVMINGDN-VVKQDLTSGSTEV-LSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG  416 (429)
T ss_pred             CCEEEEEcCCC-EEEEECCCCCeEE-ecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC
Confidence            99998887765 4559998876432 2111  12245679999999999998888887775  35666676665543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=3.9e-16  Score=120.62  Aligned_cols=232  Identities=18%  Similarity=0.271  Sum_probs=172.7

Q ss_pred             cccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc---eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC--
Q 020798           73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT---CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG--  147 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--  147 (321)
                      ..+|+|.+|++|+..+|.+.....|.||......   ..+.+..|...++.++|+|..+.|++|+.|..-++|....+  
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            3679999999999999999999999999987665   45677889999999999999999999999999999998433  


Q ss_pred             -EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce---eeeeccCCCCCeEEEEEccCCCEEEEEecCCe
Q 020798          148 -KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC---MKTLIDDENPPVSFVKFSPNGKFILVGTLDNT  223 (321)
Q Consensus       148 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~  223 (321)
                       ++...+..++..++++.|+|.++.|++|+....|.+|-.+....   -+.+.......|.++.|+|++-++++|+.|+.
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence             23445566888999999999999999999999999987754321   12233345567899999999999999999999


Q ss_pred             EEEEeCC-----C-------------CcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce-EEEEec
Q 020798          224 LRLWNYS-----T-------------GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK-VVQKLE  284 (321)
Q Consensus       224 i~i~d~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~  284 (321)
                      .++|..-     .             |.+...+.  ....+.-...| +++|..|+-.+.|..+.+-|..... .+..+.
T Consensus       170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~f-s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~  246 (361)
T KOG1523|consen  170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLF-SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA  246 (361)
T ss_pred             eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEe-CCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence            9999741     0             11111111  11112222233 4679999999999999999987664 333333


Q ss_pred             CCCCCeEEEEecCCCceEEEEeec
Q 020798          285 GHTDPVISVASHPTENIIASGALD  308 (321)
Q Consensus       285 ~h~~~v~~~~~~p~~~~l~s~~~d  308 (321)
                      ...-|.+++.|-.+. .++.++.|
T Consensus       247 ~~~lP~ls~~~ise~-~vv~ag~~  269 (361)
T KOG1523|consen  247 TAQLPLLSVSWISEN-SVVAAGYD  269 (361)
T ss_pred             hccCCceeeEeecCC-ceeecCCC
Confidence            334688888886544 44444444

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.2e-15  Score=119.92  Aligned_cols=186  Identities=20%  Similarity=0.379  Sum_probs=135.0

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-CCEEEEEeCCCcEEEEe
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWD  101 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd  101 (321)
                      .-.+.-++|++.=..+|++..|-.|++|+....      .+..++.  .-...|.+++|-|. ++.|+.|+..| |.+|.
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst------~pt~Lks--~sQrnvtclawRPlsaselavgCr~g-IciW~  168 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST------CPTKLKS--VSQRNVTCLAWRPLSASELAVGCRAG-ICIWS  168 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCC------CCceecc--hhhcceeEEEeccCCcceeeeeecce-eEEEE
Confidence            346777899998788999999999999976531      1111111  12457999999996 46788888766 88997


Q ss_pred             cCCc----ce----------eeeeecCcccEEEEEECCCCCEEEEeeC-CCcEEEEecCCCEEEEEEeCCCCCeeEEEEc
Q 020798          102 VPTA----TC----------LKTLIGHTNYVFCVNFNPQSNMIVSGAF-DETVRIWDVKTGKCLKVLPAHSDPVTAVDFN  166 (321)
Q Consensus       102 ~~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  166 (321)
                      ....    +.          +..-.+| .+|.++.|++||..+++++. |..|.+||..++..+.......+.++-+.|+
T Consensus       169 ~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS  247 (445)
T KOG2139|consen  169 DSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS  247 (445)
T ss_pred             cCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence            6431    11          1122344 57999999999999998874 5789999999987666554556678889999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe
Q 020798          167 RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       167 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      ||+..|++++-|+..++|...............+ .+....|+|.|++|+.+.
T Consensus       248 Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  248 PDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             CCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEE
Confidence            9999999999999999996543322222222223 688899999999887654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=5.4e-15  Score=127.21  Aligned_cols=220  Identities=13%  Similarity=0.148  Sum_probs=146.6

Q ss_pred             cccccccEEEEEECCCCCEEEEEe---CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEe-eCCC--cEEEE
Q 020798           69 FTGHEQGVSDLVFSSDSRFLVSAS---DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG-AFDE--TVRIW  142 (321)
Q Consensus        69 ~~~h~~~i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~~w  142 (321)
                      +..+...+...+|+|||+.|+..+   .+..+.+|++.+++.. .+...........|+|||+.|+.. +.+|  .|++|
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~  272 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  272 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence            344566789999999999888654   2357999999887532 222223334567999999988754 4444  58899


Q ss_pred             ecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCC-C--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe
Q 020798          143 DVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD-G--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       143 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      |+.+++... +..+...+....|+|+|+.++..+.+ +  .|..+|+.++... .+.. .........|+|+|++++...
T Consensus       273 d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~SpDG~~Ia~~~  349 (429)
T PRK03629        273 DLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQNQDADVSSDGKFMVMVS  349 (429)
T ss_pred             ECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCCCccCEEECCCCCEEEEEE
Confidence            998876544 33444567889999999988776653 4  4555577665432 2221 222345678999999998765


Q ss_pred             cC---CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCe---EEEEEcccceEEEEecCCCCCeEEE
Q 020798          220 LD---NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSC---VYLWELQSRKVVQKLEGHTDPVISV  293 (321)
Q Consensus       220 ~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~~~h~~~v~~~  293 (321)
                      .+   ..|.+||+.+++.. .+.... ..  ....+ .+||++|+..+.++.   +.++++ .++....+.+|.+.+...
T Consensus       350 ~~~g~~~I~~~dl~~g~~~-~Lt~~~-~~--~~p~~-SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p  423 (429)
T PRK03629        350 SNGGQQHIAKQDLATGGVQ-VLTDTF-LD--ETPSI-APNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFP  423 (429)
T ss_pred             ccCCCceEEEEECCCCCeE-EeCCCC-CC--CCceE-CCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCc
Confidence            43   35888999877643 333211 11  11223 478998888877764   667776 455566777888889999


Q ss_pred             EecCC
Q 020798          294 ASHPT  298 (321)
Q Consensus       294 ~~~p~  298 (321)
                      +|+|-
T Consensus       424 ~Wsp~  428 (429)
T PRK03629        424 AWSPY  428 (429)
T ss_pred             ccCCC
Confidence            99984

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=1.6e-14  Score=113.82  Aligned_cols=237  Identities=18%  Similarity=0.292  Sum_probs=167.5

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC--CcEEEE
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD--KTIRLW  100 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d--~~i~iw  100 (321)
                      ...+....|+.+...|..|+.||. ++|.......        ..........|-.+-|+.  .++|..+.+  +.++++
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--------~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~   73 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--------CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVV   73 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCce-eEEecCchHH--------hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEE
Confidence            445677779999999999998875 4565543221        000011123355556654  455555443  459999


Q ss_pred             ecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeC---CCCCeeEEEEccCCCEEEEE--
Q 020798          101 DVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPA---HSDPVTAVDFNRDGTMIVTS--  175 (321)
Q Consensus       101 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~--  175 (321)
                      ++.....+..+. ....|.++.++.  +.|+++-.+ .|++||+++.+.+.++..   +...+.++++++.+.+++.-  
T Consensus        74 ~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s  149 (391)
T KOG2110|consen   74 HFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS  149 (391)
T ss_pred             EcccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC
Confidence            988877665544 456688888875  456666554 499999999988877643   33345555555555677653  


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCe-EEEEeCCCCcEEEEEeccCCceeEEEeEEEe
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT-LRLWNYSTGKILKTYTGHTNSKYCISSTFSV  254 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (321)
                      ...|.|.+||+.+-+.+..+. .|...+.+++|+++|.+|++++..|+ ||||.+.+|+.+..+........ +....+.
T Consensus       150 ~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~-IySL~Fs  227 (391)
T KOG2110|consen  150 TTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVS-IYSLSFS  227 (391)
T ss_pred             CCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeE-EEEEEEC
Confidence            346899999999887766654 77888999999999999999999886 79999999999999876554333 3344455


Q ss_pred             cCCeEEEEeCCCCeEEEEEccc
Q 020798          255 TNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      +++++|++.+..++|.+|.+..
T Consensus       228 ~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  228 PDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CCCCeEEEecCCCeEEEEEecc
Confidence            7899999999999999998753

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.2e-16  Score=124.31  Aligned_cols=192  Identities=21%  Similarity=0.353  Sum_probs=144.5

Q ss_pred             CEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECC--CCCEEEEeeCCCcEEEEecCCCEEEEEE--eCCC-CCe
Q 020798           86 RFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP--QSNMIVSGAFDETVRIWDVKTGKCLKVL--PAHS-DPV  160 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~-~~v  160 (321)
                      ..+|++...|+|++||..+++.+..+.++...+..+.|..  ....+.+|+.||+|++||++.......+  ..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688899999999999999999999999999999998876  4577999999999999999986554433  3343 456


Q ss_pred             eEEEEccCCCEEEEEe----CCCeEEEEeCCCCce-eeeeccCCCCCeEEEEEccC-CCEEEEEecCCeEEEEeCCCCcE
Q 020798          161 TAVDFNRDGTMIVTSS----YDGLCRIWDASTGHC-MKTLIDDENPPVSFVKFSPN-GKFILVGTLDNTLRLWNYSTGKI  234 (321)
Q Consensus       161 ~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~-g~~l~~~~~d~~i~i~d~~~~~~  234 (321)
                      .+++.+..++.+++|+    .+-.+.+||.|..+. +..+...|...|+++.|+|. -++|++|+.||.+.+||+.....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            6777766777787775    356799999998765 66677778889999999995 56788999999999999875422


Q ss_pred             ----EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEE
Q 020798          235 ----LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV  280 (321)
Q Consensus       235 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (321)
                          +..+. +...+.++  -|..+.-..+.+-+......+|+++.+...
T Consensus       201 eDaL~~viN-~~sSI~~i--gw~~~~ykrI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  201 EDALLHVIN-HGSSIHLI--GWLSKKYKRIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             hhhHHHhhc-ccceeeee--eeecCCcceEEEEEccCceeEEEccCCChh
Confidence                22221 22222222  233333346888888999999999876543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=1.2e-17  Score=134.74  Aligned_cols=232  Identities=19%  Similarity=0.282  Sum_probs=185.0

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL  153 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  153 (321)
                      -+.+.+.++.+|++++.|+.-|.|..+|..+......+. -...|..+.|-.+..+|+++ ....+++||- .|..+..+
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHCl  206 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCL  206 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeeh
Confidence            456789999999999999999999999999988665543 34567888888777666654 5678999994 56666666


Q ss_pred             eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc
Q 020798          154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK  233 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~  233 (321)
                      ..| ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+.... ..+..+.-+|-...+-+|...|+|.+|.....+
T Consensus       207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~-G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA-GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-CccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence            654 468899999998888999999999999999998877765443 356678888988889999999999999999988


Q ss_pred             EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccE
Q 020798          234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTV  313 (321)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i  313 (321)
                      ++..+.+|.+++..+   ...++|++++|.+.|..++|||++....+..+.. .-+...+++|..|. ||.+ .+  ..|
T Consensus       285 PLvKiLcH~g~V~si---Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA~~-~G--~~v  356 (545)
T KOG1272|consen  285 PLVKILCHRGPVSSI---AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-LALS-YG--DHV  356 (545)
T ss_pred             hHHHHHhcCCCcceE---EECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccc-eeee-cC--Cee
Confidence            888888888876554   4457899999999999999999998876666554 34678899986664 4443 22  368


Q ss_pred             EEccc
Q 020798          314 KIWTQ  318 (321)
Q Consensus       314 ~iw~~  318 (321)
                      .||.-
T Consensus       357 ~iw~d  361 (545)
T KOG1272|consen  357 QIWKD  361 (545)
T ss_pred             eeehh
Confidence            99963

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=2.2e-15  Score=119.44  Aligned_cols=268  Identities=19%  Similarity=0.270  Sum_probs=181.5

Q ss_pred             cccEEEEEECCCCC--EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEE
Q 020798           23 LRAISSVKFSHDGR--LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLW  100 (321)
Q Consensus        23 ~~~v~~~~~s~~g~--~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iw  100 (321)
                      ...|+.++|.-+++  .|..++.+..+..+...+.....  ....+.....-...|..++.. + ..|++|-.+|.+.+|
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s--~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS--SLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCcccc--ccccccccccccccccchhhc-C-CEEEEEecCCcEEEE
Confidence            45678888886554  55556567777666554322111  001111223334556655543 3 367888999999999


Q ss_pred             ecCCcc----eeeeeecCcccEEEEEECCCC-CEEEEeeCC--CcEEEEecCCCEEEEEEeCCC---------CCeeEEE
Q 020798          101 DVPTAT----CLKTLIGHTNYVFCVNFNPQS-NMIVSGAFD--ETVRIWDVKTGKCLKVLPAHS---------DPVTAVD  164 (321)
Q Consensus       101 d~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~---------~~v~~~~  164 (321)
                      ....+.    .+..+. ....+..+.-.+.. ..+++|+..  ..+.+||+...+.+..-+.-.         -.++++.
T Consensus       131 ~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             eccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence            987443    112222 22445556556544 456668888  789999998875443322111         1356788


Q ss_pred             EccC--CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEE-Eecc
Q 020798          165 FNRD--GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT-YTGH  241 (321)
Q Consensus       165 ~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~  241 (321)
                      |-+.  ...|++++.-+.+++||.+.++-....+.....+++++...|+|+++++|..-+.+..||++.++++.. +.+.
T Consensus       210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~  289 (412)
T KOG3881|consen  210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI  289 (412)
T ss_pred             ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence            8887  779999999999999999976544333344567899999999999999999999999999999998877 7666


Q ss_pred             CCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCC
Q 020798          242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE  299 (321)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~  299 (321)
                      .+.+..+   ...+..+++|+++-|+.|||+|+++.++++..- -.+.++++.+.++-
T Consensus       290 tGsirsi---h~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~~  343 (412)
T KOG3881|consen  290 TGSIRSI---HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDDV  343 (412)
T ss_pred             cCCcceE---EEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCCc
Confidence            6654443   445778899999999999999999987765432 13456677765553

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=2.2e-15  Score=117.04  Aligned_cols=275  Identities=20%  Similarity=0.340  Sum_probs=177.0

Q ss_pred             EEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE-EEeCCCcEEEEecCCcce
Q 020798           29 VKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV-SASDDKTIRLWDVPTATC  107 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~  107 (321)
                      ..|||+|+++|+++.. .+.+-|...        .+..+.+. --+.|.-+.|..|..+++ ....++.|.+|++...+.
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~t--------lq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew   83 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSET--------LQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW   83 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccch--------hhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence            6899999999999865 555544322        11111111 124577788998887665 457788999999988877


Q ss_pred             eeeeecCcccEEEEEECCCCCE-EEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC-------
Q 020798          108 LKTLIGHTNYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG-------  179 (321)
Q Consensus       108 ~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------  179 (321)
                      ...+..-.+.+..++|+|+|+. |.+...+-.|.+|.+.+.+... ++-....+..++|+|+|++.+.++...       
T Consensus        84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i  162 (447)
T KOG4497|consen   84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQI  162 (447)
T ss_pred             EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHH
Confidence            6677777788999999999965 5667789999999998765433 333344567788888888766654321       


Q ss_pred             -----------------------------eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 020798          180 -----------------------------LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       180 -----------------------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~  230 (321)
                                                   .+.+||.--..  +.+.-+.+-.+..++|+|.++++++|+.|+.+|+.+--
T Consensus       163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley--kv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY--KVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh--eeeeeeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence                                         12233311000  00111122457789999999999999999998886643


Q ss_pred             CCcEEEEE------------------------------------------------------------e---ccCCceeE
Q 020798          231 TGKILKTY------------------------------------------------------------T---GHTNSKYC  247 (321)
Q Consensus       231 ~~~~~~~~------------------------------------------------------------~---~~~~~~~~  247 (321)
                      +.+....+                                                            +   ...++...
T Consensus       241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g  320 (447)
T KOG4497|consen  241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG  320 (447)
T ss_pred             eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence            22111100                                                            0   00011112


Q ss_pred             EEeEEEecCCeEEEEeCC--CCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          248 ISSTFSVTNGKYIVSGSE--DSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       248 ~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +....+.+|..++++-..  ...+-+||++..++...+. ...+|+...|+|....|+.+.  +..++++|...
T Consensus       321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct--g~srLY~W~ps  391 (447)
T KOG4497|consen  321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT--GKSRLYFWAPS  391 (447)
T ss_pred             cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc--CCceEEEEcCC
Confidence            333444567777777543  3578999998876544332 346899999999998877764  34568888753

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.73  E-value=3.2e-15  Score=116.78  Aligned_cols=286  Identities=22%  Similarity=0.402  Sum_probs=186.3

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccccccc------------ccEEEEEECCCCC--EE
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHE------------QGVSDLVFSSDSR--FL   88 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~i~~~~~~~~~~--~l   88 (321)
                      ..-|+++.|.+.|++||+|..+|.|.++........+   ......+..|.            ..|..+.|.++++  .+
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~e---y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGE---YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccc---eeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            4568999999999999999999999999655433211   11112222332            3578899988764  56


Q ss_pred             EEEeCCCcEEEEecCCccee-----------------------------------ee-eecCcccEEEEEECCCCCEEEE
Q 020798           89 VSASDDKTIRLWDVPTATCL-----------------------------------KT-LIGHTNYVFCVNFNPQSNMIVS  132 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~~~~~-----------------------------------~~-~~~~~~~v~~~~~~~~~~~l~~  132 (321)
                      +..+.|.+|++|.+......                                   +. -.+|.-.|.++.++.|...+++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            77889999999987432100                                   00 1357788999999999988887


Q ss_pred             eeCCCcEEEEecCCCE-E--EEEEeCCC-----CCeeEEEEccCC-CEEEEEeCCCeEEEEeCCCCcee-------e---
Q 020798          133 GAFDETVRIWDVKTGK-C--LKVLPAHS-----DPVTAVDFNRDG-TMIVTSSYDGLCRIWDASTGHCM-------K---  193 (321)
Q Consensus       133 ~~~dg~i~~wd~~~~~-~--~~~~~~~~-----~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~-------~---  193 (321)
                      + .|-.|.+|.+.-.. .  +..++.+.     .-|++..|+|.. +.|+-.+..|+|++.|++....-       .   
T Consensus       182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            6 46889999875322 1  12222222     347889999964 56777888999999999842110       0   


Q ss_pred             -----eeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC-CCCcEEEEEeccCCce------------e-EEEeEEEe
Q 020798          194 -----TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY-STGKILKTYTGHTNSK------------Y-CISSTFSV  254 (321)
Q Consensus       194 -----~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~------------~-~~~~~~~~  254 (321)
                           .+....-..|..+.|++.|+++++-. --+|++||+ ...+++..++.|....            + ...+++ .
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~-s  338 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW-S  338 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE-c
Confidence                 01111123477899999999997533 358999999 5667777777654211            1 112223 3


Q ss_pred             cCCeEEEEeCCCCeEEEEEcccceE-------------------EEEec--CC-------------CCCeEEEEecCCCc
Q 020798          255 TNGKYIVSGSEDSCVYLWELQSRKV-------------------VQKLE--GH-------------TDPVISVASHPTEN  300 (321)
Q Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~-------------------~~~~~--~h-------------~~~v~~~~~~p~~~  300 (321)
                      .++.+++||+....+++|++..+..                   +....  +-             ...+...+|||.++
T Consensus       339 g~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en  418 (433)
T KOG1354|consen  339 GNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKEN  418 (433)
T ss_pred             CCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccc
Confidence            4677999999999999999543211                   00000  10             11245678999999


Q ss_pred             eEEEEeecCCccEEEcc
Q 020798          301 IIASGALDNDRTVKIWT  317 (321)
Q Consensus       301 ~l~s~~~d~~~~i~iw~  317 (321)
                      .+|.+..   ..++|+.
T Consensus       419 ~ia~aat---nnlyif~  432 (433)
T KOG1354|consen  419 SIAVAAT---NNLYIFQ  432 (433)
T ss_pred             eeeeeec---CceEEec
Confidence            9999863   3566653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=1.7e-14  Score=111.54  Aligned_cols=233  Identities=16%  Similarity=0.288  Sum_probs=154.8

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCC------CcEEEEecCCCE
Q 020798           76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFD------ETVRIWDVKTGK  148 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d------g~i~~wd~~~~~  148 (321)
                      ..+++|+.|..-+++|..+| .+||+.+..+.......+.+.+.-+..--..++|+ .|+.+      ..+.+||-...+
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            34589999988888877766 89999876433222111222211111111234443 34333      468999966666


Q ss_pred             EEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCC-CCceeeeeccCCCCCeEEEEEcc--CCCEEEE-EecCCeE
Q 020798          149 CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS-TGHCMKTLIDDENPPVSFVKFSP--NGKFILV-GTLDNTL  224 (321)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~--~g~~l~~-~~~d~~i  224 (321)
                      ++..+. ...+|.++.+.++  .+++.- .+.|++|... +.+.++.+....++.- .++..|  ...+|+. |..-|+|
T Consensus        87 ~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkG-lC~~~~~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   87 CIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKG-LCSLCPTSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             EEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCc-eEeecCCCCceEEEcCCCccceE
Confidence            666664 4678999999875  344443 4679999887 4444444433222211 233444  3334444 3456899


Q ss_pred             EEEeCCCCcE--EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCe-EEEEEcccceEEEEecC--CCCCeEEEEecCCC
Q 020798          225 RLWNYSTGKI--LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSC-VYLWELQSRKVVQKLEG--HTDPVISVASHPTE  299 (321)
Q Consensus       225 ~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~  299 (321)
                      .|-|+...+.  ...+..|...+.|+..   ..+|..+|+++..|+ |||||..++..+.+++-  ....|.+++|||+.
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~L---n~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSDIACVAL---NLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS  238 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCceeEEEE---cCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence            9999876554  4667788887766654   367999999999997 69999999999988764  23579999999999


Q ss_pred             ceEEEEeecCCccEEEcccc
Q 020798          300 NIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       300 ~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .+||++|  +.|++.|+.++
T Consensus       239 s~LavsS--dKgTlHiF~l~  256 (346)
T KOG2111|consen  239 SWLAVSS--DKGTLHIFSLR  256 (346)
T ss_pred             cEEEEEc--CCCeEEEEEee
Confidence            9999987  46999999875

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.2e-14  Score=120.75  Aligned_cols=270  Identities=20%  Similarity=0.269  Sum_probs=183.5

Q ss_pred             CCcccEEEEEECCCCCEE-EEecCCceEEEeeccccCCCCCCCCCccccccccc-c-cEEEEEECCCCCEEEEEeCCCcE
Q 020798           21 GHLRAISSVKFSHDGRLL-ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHE-Q-GVSDLVFSSDSRFLVSASDDKTI   97 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~-~-~i~~~~~~~~~~~l~~~~~d~~i   97 (321)
                      +|...-+.+..+|||+|+ |+|..--.|++||+....          ..+..|. . .|.-.-.+.|-..++.-..|..|
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS----------LKFERhlDae~V~feiLsDD~SK~v~L~~DR~I  118 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS----------LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTI  118 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccce----------eeeeecccccceeEEEeccchhhheEeecCcee
Confidence            577888899999999985 677778899999986432          1233332 2 23333334443344444567766


Q ss_pred             EEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC
Q 020798           98 RLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY  177 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  177 (321)
                      .+........-..   -...-..++++.-..-|+.++....|+-+++..|+-+..+......++++..++...+|++|+.
T Consensus       119 efHak~G~hy~~R---IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~  195 (703)
T KOG2321|consen  119 EFHAKYGRHYRTR---IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE  195 (703)
T ss_pred             eehhhcCeeeeee---cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEeccc
Confidence            6543221111111   1122345566544444555666677899999999988888777789999999999989999999


Q ss_pred             CCeEEEEeCCCCceeeeec----------cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeE
Q 020798          178 DGLCRIWDASTGHCMKTLI----------DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYC  247 (321)
Q Consensus       178 dg~i~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  247 (321)
                      +|.+-+||.+....+..+.          ....+.|+.+.|+.+|-.+++|+.+|.+.|||+++.+++..- .|......
T Consensus       196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi  274 (703)
T KOG2321|consen  196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPI  274 (703)
T ss_pred             CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccce
Confidence            9999999998754433321          112245899999999999999999999999999998776532 34333333


Q ss_pred             EEeEEEecC-CeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          248 ISSTFSVTN-GKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       248 ~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      ....|...+ +..+++ .....++|||-.+++....+.. ...++.+++-|+.-++.+|-
T Consensus       275 ~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  275 KKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             eeecccccCCCceEEe-cchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEec
Confidence            333343333 334544 4456789999999998877764 45699999999998888875

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.3e-14  Score=123.42  Aligned_cols=220  Identities=18%  Similarity=0.194  Sum_probs=140.8

Q ss_pred             cccccccEEEEEECCCCCEEEEEeCC---CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCCCcEEEE--
Q 020798           69 FTGHEQGVSDLVFSSDSRFLVSASDD---KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFDETVRIW--  142 (321)
Q Consensus        69 ~~~h~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w--  142 (321)
                      +..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.. .+...........|+|||+.|+ +.+.++...+|  
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            44566778899999999998877643   35999999888643 2333344556789999999876 45677775555  


Q ss_pred             ecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC-CCeEEEE--eCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe
Q 020798          143 DVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-DGLCRIW--DASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       143 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      |+..+. ...+..+........|+|||+.++..+. ++...+|  ++.++.... +... ........|+|+|++|+..+
T Consensus       270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~-g~~~~~~~~SpDG~~Ia~~s  346 (427)
T PRK02889        270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFT-GSYNTSPRISPDGKLLAYIS  346 (427)
T ss_pred             ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecC-CCCcCceEECCCCCEEEEEE
Confidence            454444 3444445555677899999998876654 4555555  444443322 2211 12233578999999998776


Q ss_pred             cCC---eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC---eEEEEEcccceEEEEecCCCCCeEEE
Q 020798          220 LDN---TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS---CVYLWELQSRKVVQKLEGHTDPVISV  293 (321)
Q Consensus       220 ~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~~  293 (321)
                      .++   .|.+||+.+++....... . ..  .. ..+.+||+.|+..+.++   .+.+.++ .++....+..+.+.+...
T Consensus       347 ~~~g~~~I~v~d~~~g~~~~lt~~-~-~~--~~-p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p  420 (427)
T PRK02889        347 RVGGAFKLYVQDLATGQVTALTDT-T-RD--ES-PSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREP  420 (427)
T ss_pred             ccCCcEEEEEEECCCCCeEEccCC-C-Cc--cC-ceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCC
Confidence            544   699999988765432221 1 11  11 22346888777665433   3555566 355556666666778888


Q ss_pred             EecCC
Q 020798          294 ASHPT  298 (321)
Q Consensus       294 ~~~p~  298 (321)
                      +|+|.
T Consensus       421 ~wsp~  425 (427)
T PRK02889        421 SWGPF  425 (427)
T ss_pred             ccCCC
Confidence            88874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=2.1e-14  Score=128.85  Aligned_cols=253  Identities=17%  Similarity=0.244  Sum_probs=167.9

Q ss_pred             cccccccccccEEEEEECCCC-CEEEEEeCCCcEEEEecCCc-------ceeeeeecCcccEEEEEECCCCCEEEEeeCC
Q 020798           65 PLQKFTGHEQGVSDLVFSSDS-RFLVSASDDKTIRLWDVPTA-------TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD  136 (321)
Q Consensus        65 ~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  136 (321)
                      .+..+..|+..+..++.++.. .++++|+.||+|++|+...-       +...++......+.++...+.++.++.++.|
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence            345667788888888888765 99999999999999997542       1222333346678889999999999999999


Q ss_pred             CcEEEEecCCCE-------EEEEEeCC-CCCeeEE-EEcc-CCC-EEEEEeCCCeEEEEeCCCCceeeeec-cCCCCCeE
Q 020798          137 ETVRIWDVKTGK-------CLKVLPAH-SDPVTAV-DFNR-DGT-MIVTSSYDGLCRIWDASTGHCMKTLI-DDENPPVS  204 (321)
Q Consensus       137 g~i~~wd~~~~~-------~~~~~~~~-~~~v~~~-~~~~-~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~  204 (321)
                      |.|++.++...+       +......+ .+.+.++ +|.. .+. .++.+...+.+..||+++.....+.. ....+.++
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence            999999886521       11111111 2333333 2322 233 67778888999999998754433322 12345689


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec-cCCceeEEEeEEEecCCeEEEE-eC-CCCeEEEEEcccceEEE
Q 020798          205 FVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG-HTNSKYCISSTFSVTNGKYIVS-GS-EDSCVYLWELQSRKVVQ  281 (321)
Q Consensus       205 ~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~~-~dg~i~vwd~~~~~~~~  281 (321)
                      +++.+|.+.++++|+..|.+.+||++-+.++.++.- +......+..+...+.....++ +. ..+.|.+|++.++..-.
T Consensus      1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred             EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence            999999999999999999999999998888877642 2233444444444343344444 44 57889999998875433


Q ss_pred             EecCC-------------------CCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          282 KLEGH-------------------TDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       282 ~~~~h-------------------~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .+...                   .-+.....+...+..+.+|+  .|..|+.||..
T Consensus      1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltgg--sd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGG--SDMKIRKWDPT 1334 (1431)
T ss_pred             EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecC--CccceeeccCC
Confidence            32211                   11122333444455677776  45789999974

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=1.7e-14  Score=124.71  Aligned_cols=220  Identities=19%  Similarity=0.170  Sum_probs=145.2

Q ss_pred             ccccccccEEEEEECCCCCEEEEEeCC---CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCCC--cEEE
Q 020798           68 KFTGHEQGVSDLVFSSDSRFLVSASDD---KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFDE--TVRI  141 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~~  141 (321)
                      .+..+...+...+|+|+|+.|+..+.+   ..|.+||+.+++.. .+...........|+|+|+.++ +.+.+|  .|++
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~  276 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV  276 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence            345566788999999999999877643   46999999877643 2333344455789999998775 445555  5999


Q ss_pred             EecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC-CCe--EEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE
Q 020798          142 WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-DGL--CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG  218 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  218 (321)
                      ||+.+++.. .+..+.......+|+|+++.++.++. +|.  +.++|+.+++... +.. ........+|+|+|++|+..
T Consensus       277 ~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~-~g~~~~~~~~SpDG~~Ia~~  353 (433)
T PRK04922        277 MDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF-QGNYNARASVSPDGKKIAMV  353 (433)
T ss_pred             EECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec-CCCCccCEEECCCCCEEEEE
Confidence            999887643 34445555567899999998877664 444  6667776665332 221 12223457999999999876


Q ss_pred             ecCC---eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCC---CCeEEEEEcccceEEEEecCCCCCeEE
Q 020798          219 TLDN---TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSE---DSCVYLWELQSRKVVQKLEGHTDPVIS  292 (321)
Q Consensus       219 ~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~  292 (321)
                      +.++   .|.+||+.+++.. .+.... ..  .... ..+||++++..+.   .+.|.++++. +.....+..+.+.+..
T Consensus       354 ~~~~~~~~I~v~d~~~g~~~-~Lt~~~-~~--~~p~-~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~  427 (433)
T PRK04922        354 HGSGGQYRIAVMDLSTGSVR-TLTPGS-LD--ESPS-FAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVRE  427 (433)
T ss_pred             ECCCCceeEEEEECCCCCeE-ECCCCC-CC--CCce-ECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCC
Confidence            5433   6999999877654 332111 11  1122 3478887765544   3457788875 4445566666667788


Q ss_pred             EEecC
Q 020798          293 VASHP  297 (321)
Q Consensus       293 ~~~~p  297 (321)
                      .+|+|
T Consensus       428 p~wsp  432 (433)
T PRK04922        428 PAWSP  432 (433)
T ss_pred             CccCC
Confidence            88887

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=3.3e-14  Score=122.40  Aligned_cols=209  Identities=17%  Similarity=0.177  Sum_probs=135.9

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecC---CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE-eCC
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSA---DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA-SDD   94 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~-~~d   94 (321)
                      +..+...+...+|||||+.|+..+.   +..+.+|++....      ...+..+.+   .+....|+|||+.|+.. +.+
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~------~~~l~~~~~---~~~~~~~SPDG~~La~~~~~~  264 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------VRQVASFPR---HNGAPAFSPDGSKLAFALSKT  264 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC------eEEccCCCC---CcCCeEECCCCCEEEEEEcCC
Confidence            3446678899999999999887542   3467777764321      112222333   34468999999988754 445


Q ss_pred             C--cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCC-C--cEEEEecCCCEEEEEEeCCCCCeeEEEEccCC
Q 020798           95 K--TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD-E--TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG  169 (321)
Q Consensus        95 ~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (321)
                      +  .|.+||+.+++.. .+..+...+....|+|+|+.|+..+.+ +  .|+++|+.+++.. .+...........|+|+|
T Consensus       265 g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG  342 (429)
T PRK03629        265 GSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDG  342 (429)
T ss_pred             CCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCC
Confidence            4  5888999887643 344444556788999999988766643 4  4555577665433 333344455678999999


Q ss_pred             CEEEEEeCC---CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCe---EEEEeCCCCcEEEEEeccC
Q 020798          170 TMIVTSSYD---GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT---LRLWNYSTGKILKTYTGHT  242 (321)
Q Consensus       170 ~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~---i~i~d~~~~~~~~~~~~~~  242 (321)
                      +.++..+.+   ..+.+||+.++... .+...  .......|+|||++|+.++.++.   +.++++ +++....+..+.
T Consensus       343 ~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~  417 (429)
T PRK03629        343 KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD  417 (429)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC
Confidence            988776543   35888999877532 22221  12335689999999998887753   677776 344445554443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1e-13  Score=109.22  Aligned_cols=252  Identities=15%  Similarity=0.188  Sum_probs=159.7

Q ss_pred             CcccEEEEEECCCC-CEEEEecCCceEEEeeccccCCCCC------CCCCcccccccccccEEEEEECCCCCEEEEEeC-
Q 020798           22 HLRAISSVKFSHDG-RLLASSSADKTLLTYSLSSISNSDS------TPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD-   93 (321)
Q Consensus        22 h~~~v~~~~~s~~g-~~l~~~~~d~~v~~~~~~~~~~~~~------~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-   93 (321)
                      ..+.|+|++|-|-+ +.|++|.. +.|.+|....-.....      .....+...++| ..|++|.|.+||..+++++- 
T Consensus       139 sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g  216 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG  216 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence            45789999999965 56777764 5577897654322111      111122334556 68999999999999998875 


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEE
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV  173 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  173 (321)
                      |..|.|||.+++..+.-...-.+.+.-+.|+||+.+|+++.-|+..++|+.....-........+.|....|+|.|+.|+
T Consensus       217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL  296 (445)
T ss_pred             cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence            56799999999876554433455678899999999999999999999996544332223334456899999999999765


Q ss_pred             EE-eCCCeEEEEeC--CCCcee-----ee--ec---------cC---CCCCeEEEEEccCCCEEEEEecCC--------e
Q 020798          174 TS-SYDGLCRIWDA--STGHCM-----KT--LI---------DD---ENPPVSFVKFSPNGKFILVGTLDN--------T  223 (321)
Q Consensus       174 ~~-~~dg~i~~~d~--~~~~~~-----~~--~~---------~~---~~~~~~~~~~~~~g~~l~~~~~d~--------~  223 (321)
                      .+ +....++-...  +.....     +.  +.         ..   -.....+++|+|.|.+|++.-..+        .
T Consensus       297 f~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~  376 (445)
T KOG2139|consen  297 FACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLH  376 (445)
T ss_pred             EEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhh
Confidence            44 44333322111  111000     00  00         00   123467899999999999865433        3


Q ss_pred             EEEEeCCCCcEEEEE-eccCC--ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          224 LRLWNYSTGKILKTY-TGHTN--SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       224 i~i~d~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      |.+||.+....+... -+...  ....+++.+...++.+|..+=+.|.+.-|++.
T Consensus       377 i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  377 ISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             hhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            777887655433322 11111  12234444444567777777777777777663

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=1.5e-14  Score=114.77  Aligned_cols=240  Identities=18%  Similarity=0.238  Sum_probs=168.2

Q ss_pred             cccEEEEEECCCCC--EEEEEeCCCcEEEEecCCcceeeee------ecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           73 EQGVSDLVFSSDSR--FLVSASDDKTIRLWDVPTATCLKTL------IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        73 ~~~i~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      ...|..++|..+++  .+...+.+..+..+.+....+....      ......|..+...  ...|++|-.+|.+.+|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence            34577788876553  4555557777777777665543322      2233444444433  457888899999999998


Q ss_pred             CCCE----EEEEEeCCCCCeeEEEEccCCC-EEEEEeCC--CeEEEEeCCCCceeeeeccCCC--------CCeEEEEEc
Q 020798          145 KTGK----CLKVLPAHSDPVTAVDFNRDGT-MIVTSSYD--GLCRIWDASTGHCMKTLIDDEN--------PPVSFVKFS  209 (321)
Q Consensus       145 ~~~~----~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d--g~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~  209 (321)
                      +.+.    ....+..+ ..+..+.-++... .+++|+..  ..+.+||+...+.+.+.....+        --++.+.|-
T Consensus       133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence            7442    22223333 3455565565544 55668888  8899999987644332211110        124567788


Q ss_pred             cC--CCEEEEEecCCeEEEEeCCCC-cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEE-ecC
Q 020798          210 PN--GKFILVGTLDNTLRLWNYSTG-KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK-LEG  285 (321)
Q Consensus       210 ~~--g~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~  285 (321)
                      +.  ...|++++.-+.+++||.+.+ +++..+.-...+..++   ...+++.++++|..-|.+..||++.++++.. +++
T Consensus       212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~---~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg  288 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST---GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG  288 (412)
T ss_pred             CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee---eecCCCcEEEEecccchhheecccCceeeccccCC
Confidence            77  788999999999999999875 4666665544444443   3447899999999999999999999998876 888


Q ss_pred             CCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          286 HTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       286 h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      -.+.|+++..+|...++|++|.|  +.|+|+|.+.
T Consensus       289 ~tGsirsih~hp~~~~las~GLD--RyvRIhD~kt  321 (412)
T KOG3881|consen  289 ITGSIRSIHCHPTHPVLASCGLD--RYVRIHDIKT  321 (412)
T ss_pred             ccCCcceEEEcCCCceEEeeccc--eeEEEeeccc
Confidence            89999999999999999999987  7999999863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=2.2e-14  Score=109.32  Aligned_cols=154  Identities=20%  Similarity=0.465  Sum_probs=109.2

Q ss_pred             EEEEECCCCCEEEEEeC----------CCcEEEEecCCc-ceeeeeec-CcccEEEEEECCCCCEEEEe--eCCCcEEEE
Q 020798           77 SDLVFSSDSRFLVSASD----------DKTIRLWDVPTA-TCLKTLIG-HTNYVFCVNFNPQSNMIVSG--AFDETVRIW  142 (321)
Q Consensus        77 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~~w  142 (321)
                      ..+.|+++|++|+.-..          -+...+|.++.. .....+.- ..+.|..++|+|+++.|+..  ..+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45789999988764433          134555655332 22233322 34469999999999987554  456799999


Q ss_pred             ecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC---CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe
Q 020798          143 DVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY---DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       143 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      |++ ++.+..+  +...+..+.|+|+|+++++++.   .|.+.+||.++.+.+...   ....+..++|+|+|++++++.
T Consensus        89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~---~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen   89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF---EHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc---ccCcEEEEEEcCCCCEEEEEE
Confidence            997 5555555  3567789999999999998874   467999999977665543   234578899999999999876


Q ss_pred             c------CCeEEEEeCCCCcEEEE
Q 020798          220 L------DNTLRLWNYSTGKILKT  237 (321)
Q Consensus       220 ~------d~~i~i~d~~~~~~~~~  237 (321)
                      .      |+.++||+.. |+.+..
T Consensus       163 t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  163 TSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             eccceeccccEEEEEec-CeEeEe
Confidence            4      6778999974 555544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.1e-13  Score=118.00  Aligned_cols=221  Identities=17%  Similarity=0.170  Sum_probs=144.6

Q ss_pred             cccccccccEEEEEECCCCCEEEEEeC---CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCCCc--EE
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFLVSASD---DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFDET--VR  140 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~  140 (321)
                      +.+..|...+...+|+|||+.|+..+.   +..|.+||+.+++. ..+..+.+.+....|+|||+.|+ +.+.++.  |+
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            445677788999999999998887653   46799999988764 33444556677889999998875 5555554  77


Q ss_pred             EEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC-CC--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEE
Q 020798          141 IWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-DG--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       141 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  217 (321)
                      +||+.+++.. .+..+........|+|+|+.++..+. +|  .|+++|+.++... .+... ........|+|+|+.|+.
T Consensus       274 ~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~SpdG~~ia~  350 (435)
T PRK05137        274 TMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWSPRGDLIAF  350 (435)
T ss_pred             EEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEECCCCCEEEE
Confidence            8898877643 45555556678999999998887663 33  6888888765433 33222 233456789999999987


Q ss_pred             EecC---CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC------CeEEEEEcccceEEEEecCCCC
Q 020798          218 GTLD---NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED------SCVYLWELQSRKVVQKLEGHTD  288 (321)
Q Consensus       218 ~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~h~~  288 (321)
                      ...+   ..|.+||+..+.. ..+... ..   .....+.+||+.|+..+.+      ..+.++|+..+.. ..+.. ..
T Consensus       351 ~~~~~~~~~i~~~d~~~~~~-~~lt~~-~~---~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~  423 (435)
T PRK05137        351 TKQGGGQFSIGVMKPDGSGE-RILTSG-FL---VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG  423 (435)
T ss_pred             EEcCCCceEEEEEECCCCce-EeccCC-CC---CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CC
Confidence            6543   3688888765443 333211 11   1112234688877654332      3577888765543 34432 33


Q ss_pred             CeEEEEecCC
Q 020798          289 PVISVASHPT  298 (321)
Q Consensus       289 ~v~~~~~~p~  298 (321)
                      .+...+|+|-
T Consensus       424 ~~~~p~Wsp~  433 (435)
T PRK05137        424 DASDPAWSPL  433 (435)
T ss_pred             CccCcccCCC
Confidence            4667777764

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.67  E-value=2.5e-15  Score=123.74  Aligned_cols=144  Identities=21%  Similarity=0.435  Sum_probs=116.0

Q ss_pred             cccEEEEEECCCC-CEEEEecCCceEEEeeccccCCCCCC--------------------CCCcccccccccccEEEEEE
Q 020798           23 LRAISSVKFSHDG-RLLASSSADKTLLTYSLSSISNSDST--------------------PPSPLQKFTGHEQGVSDLVF   81 (321)
Q Consensus        23 ~~~v~~~~~s~~g-~~l~~~~~d~~v~~~~~~~~~~~~~~--------------------~~~~~~~~~~h~~~i~~~~~   81 (321)
                      +..|+|+.|-|.+ .+++++-.+|.+.+|+..-.......                    ...|+..+..-.+.|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            3679999999855 46777888999999876322111100                    01223333334467899999


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCee
Q 020798           82 SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVT  161 (321)
Q Consensus        82 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~  161 (321)
                      +|||++||+.+.||.++|+|..+.+.+..++..-+...|++|+|||++|++|+.|-.|.||.+...+.+..-++|...|.
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs  378 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS  378 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence            99999999999999999999999887766667778899999999999999999999999999999999888889999999


Q ss_pred             EEEEc
Q 020798          162 AVDFN  166 (321)
Q Consensus       162 ~~~~~  166 (321)
                      .++|.
T Consensus       379 ~VaFD  383 (636)
T KOG2394|consen  379 VVAFD  383 (636)
T ss_pred             eEeec
Confidence            99998

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.66  E-value=3.2e-15  Score=112.64  Aligned_cols=239  Identities=19%  Similarity=0.298  Sum_probs=155.2

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC-----CCC----EEEEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS-----DSR----FLVSA   91 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-----~~~----~l~~~   91 (321)
                      .|...|+.+.--|+ ..|.+-+.|..+..|++....           ....|.-.++++-|.+     .++    .++.-
T Consensus        54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~-----------~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp  121 (323)
T KOG0322|consen   54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA-----------FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYP  121 (323)
T ss_pred             hccceeeceeecCC-cchhhcCCCceEEEEEccCcc-----------eEEEeeeeccccccccceeccCCCcchhheecC
Confidence            45667888888887 567788899999999876411           1112232333333332     111    11111


Q ss_pred             eCCC-cEEEEecCCcceeee----eecCcccEEEEEECC-CCC--EEEEeeCCCcEEEEecCCCEEE----------EEE
Q 020798           92 SDDK-TIRLWDVPTATCLKT----LIGHTNYVFCVNFNP-QSN--MIVSGAFDETVRIWDVKTGKCL----------KVL  153 (321)
Q Consensus        92 ~~d~-~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~-~~~--~l~~~~~dg~i~~wd~~~~~~~----------~~~  153 (321)
                      +... .+.+-|......+..    -.+..+.+.+..+.. ++.  ++++|..+|.+-+||+.++..+          ...
T Consensus       122 ~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~  201 (323)
T KOG0322|consen  122 SRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPN  201 (323)
T ss_pred             CcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccch
Confidence            1000 011112111111110    112334566665433 233  3567889999999999887332          334


Q ss_pred             eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCC--Cce-eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 020798          154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST--GHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~  230 (321)
                      ..|..+|.++.|.+.-..=++++.+..+..|.+..  +.+ +.....-.++.+..+.+-||++.+++++.|+.||||+.+
T Consensus       202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr  281 (323)
T KOG0322|consen  202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR  281 (323)
T ss_pred             hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence            56889999999987666667788888888888753  222 122222345678889999999999999999999999999


Q ss_pred             CCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          231 TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      +..++..++-|...+.+++   +.++...+|+++.|++|.+|++
T Consensus       282 tl~pLAVLkyHsagvn~vA---fspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  282 TLNPLAVLKYHSAGVNAVA---FSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCchhhhhhhhcceeEEE---eCCCCchhhhccCCceEEeeec
Confidence            9999999998887665543   3467889999999999999986

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.65  E-value=5.9e-14  Score=107.01  Aligned_cols=149  Identities=19%  Similarity=0.365  Sum_probs=105.6

Q ss_pred             EEEECCCCCEEEEecC----------CceEEEeeccccCCCCCCCCCccccccc-ccccEEEEEECCCCCEEEEE--eCC
Q 020798           28 SVKFSHDGRLLASSSA----------DKTLLTYSLSSISNSDSTPPSPLQKFTG-HEQGVSDLVFSSDSRFLVSA--SDD   94 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~~----------d~~v~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~l~~~--~~d   94 (321)
                      .+.|+|+|++|+.-..          -+...+|.+...       ..+...+.- ..+.|.+++|+|+|+.|++.  ..+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~-------~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~   82 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK-------NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMP   82 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC-------CCccceeeccCCCceEEEEECcCCCEEEEEEccCC
Confidence            5789999998765332          223445544321       112222222 23569999999999987544  456


Q ss_pred             CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC---CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCE
Q 020798           95 KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF---DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTM  171 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  171 (321)
                      ..|.+||++ .+.+..+  +...+..+.|+|+|+++++++.   .|.|.+||.++.+.+.... | ..++.++|+|+|++
T Consensus        83 ~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~  157 (194)
T PF08662_consen   83 AKVTLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRY  157 (194)
T ss_pred             cccEEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCE
Confidence            799999996 4444444  3456788999999999998874   3679999999888777654 3 34789999999999


Q ss_pred             EEEEeC------CCeEEEEeCCC
Q 020798          172 IVTSSY------DGLCRIWDAST  188 (321)
Q Consensus       172 l~~~~~------dg~i~~~d~~~  188 (321)
                      ++++..      |+.++||+...
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEEEeccceeccccEEEEEecC
Confidence            998763      67788898753

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=7.9e-14  Score=120.13  Aligned_cols=206  Identities=21%  Similarity=0.232  Sum_probs=131.3

Q ss_pred             eccCCcccEEEEEECCCCCEEEEecCC---ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE-EEeC
Q 020798           18 TLNGHLRAISSVKFSHDGRLLASSSAD---KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV-SASD   93 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-~~~~   93 (321)
                      .+..+...+.+.+|+|||+.|+..+.+   ..+.+|++....         ...+....+.+...+|+|||+.|+ +.+.
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~  260 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---------RRVVANFKGSNSAPAWSPDGRTLAVALSR  260 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEEcc
Confidence            345677889999999999999877643   358888875421         111222234456789999998886 5677


Q ss_pred             CCcEEEEe--cCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-CCcEEEEe--cCCCEEEEEEeCCCCCeeEEEEccC
Q 020798           94 DKTIRLWD--VPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-DETVRIWD--VKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        94 d~~i~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd--~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      ++...+|.  +..+. ...+..+........|+|||+.|+..+. ++...+|.  +.+++.. .+..........+|+|+
T Consensus       261 ~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpD  338 (427)
T PRK02889        261 DGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPD  338 (427)
T ss_pred             CCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCC
Confidence            78766665  44443 3445445555567889999998776553 45555654  4444432 22222333456789999


Q ss_pred             CCEEEEEeCCC---eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCC---eEEEEeCCCCcEEEEE
Q 020798          169 GTMIVTSSYDG---LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN---TLRLWNYSTGKILKTY  238 (321)
Q Consensus       169 ~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~---~i~i~d~~~~~~~~~~  238 (321)
                      |+.++..+.++   .|.+||+.+++.. .+...  .......|+|+|++|+.++.++   .+.+.++ +++....+
T Consensus       339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l  410 (427)
T PRK02889        339 GKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL  410 (427)
T ss_pred             CCEEEEEEccCCcEEEEEEECCCCCeE-EccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe
Confidence            99988776544   6999999877643 22221  2235678999999988876543   3555555 34434333

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=6.1e-13  Score=115.18  Aligned_cols=215  Identities=17%  Similarity=0.151  Sum_probs=140.4

Q ss_pred             CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC---CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCE
Q 020798           95 KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF---DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTM  171 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  171 (321)
                      ..|.++|..... .+.+..+...+....|+|||+.|+..+.   +..|++||+.+++.. .+..+...+...+|+|+|+.
T Consensus       182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            368888875544 4556677888999999999998887653   468999999887653 34445667778999999987


Q ss_pred             EE-EEeCCCe--EEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec-C--CeEEEEeCCCCcEEEEEeccCCce
Q 020798          172 IV-TSSYDGL--CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL-D--NTLRLWNYSTGKILKTYTGHTNSK  245 (321)
Q Consensus       172 l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~  245 (321)
                      ++ +.+.++.  |.+||+.++... .+. ..........|+|+|+.|+..+. +  ..|.++|+..++... +.......
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~  336 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTT-RLT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRY  336 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceE-Ecc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcc
Confidence            75 4455554  777788876543 332 23333456899999998887653 3  368888987665433 32222211


Q ss_pred             eEEEeEEEecCCeEEEEeCCC---CeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCc----cEEEccc
Q 020798          246 YCISSTFSVTNGKYIVSGSED---SCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR----TVKIWTQ  318 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~----~i~iw~~  318 (321)
                         ......++|+.|+..+.+   ..|.+||+..+.. ..+. ....+.+..|+|||+.|+..+.+..+    .+.++++
T Consensus       337 ---~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        337 ---STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             ---cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence               112234788888765432   3688888755432 2332 22346788999999998876644322    4666655


Q ss_pred             c
Q 020798          319 E  319 (321)
Q Consensus       319 ~  319 (321)
                      +
T Consensus       412 ~  412 (435)
T PRK05137        412 T  412 (435)
T ss_pred             C
Confidence            3

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4.1e-15  Score=121.08  Aligned_cols=252  Identities=21%  Similarity=0.363  Sum_probs=180.0

Q ss_pred             cccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeee-ecCcccEEEEEECCC--CCEEEEeeCCCcEEEEe
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTL-IGHTNYVFCVNFNPQ--SNMIVSGAFDETVRIWD  143 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd  143 (321)
                      ..+..|.+.|..+.|+..|..|++|+.|..|.+||...+.....+ .+|...|+...|-|.  ...+++++.||.+++=.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            456789999999999999999999999999999999887655444 678888888888885  35689999999999766


Q ss_pred             cCC-CEE--EEEEeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEeCCCCceeeeecc--CCCC---CeEEEEEccCCC-
Q 020798          144 VKT-GKC--LKVLPAHSDPVTAVDFNRDGT-MIVTSSYDGLCRIWDASTGHCMKTLID--DENP---PVSFVKFSPNGK-  213 (321)
Q Consensus       144 ~~~-~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~---~~~~~~~~~~g~-  213 (321)
                      +.. +..  ...+..|.++|..++.-|+.. .|.+++.|+.+.-+|++.......+..  ....   ....++.+|... 
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence            533 222  334567899999999999765 688999999999999987654333221  1112   356788888665 


Q ss_pred             EEEEEecCCeEEEEeCCCCc------EEEEEeccC---CceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc--c-----
Q 020798          214 FILVGTLDNTLRLWNYSTGK------ILKTYTGHT---NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS--R-----  277 (321)
Q Consensus       214 ~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~-----  277 (321)
                      .+++++.|..+++||.+.-.      .+..+..+.   .....|+...+..++.-|.+.-.|-.|++|.-..  +     
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~  375 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP  375 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence            78899999999999976422      223332221   1122344444544555556666778899995321  2     


Q ss_pred             -----eEEEE-ecCCCC--CeEEEE-ecCCCceEEEEeecCCccEEEccccc
Q 020798          278 -----KVVQK-LEGHTD--PVISVA-SHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       278 -----~~~~~-~~~h~~--~v~~~~-~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                           ..++. ++||.+  .|.++. |-|...++++||  .-|.|.||+.+.
T Consensus       376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS--DCGhIFiW~K~t  425 (559)
T KOG1334|consen  376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS--DCGHIFIWDKKT  425 (559)
T ss_pred             CcchhhccchhhcccccccccceeeeccCccceEEecC--ccceEEEEecch
Confidence                 22334 789964  577776 468889999987  468999999753

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.5e-13  Score=118.82  Aligned_cols=200  Identities=21%  Similarity=0.199  Sum_probs=132.8

Q ss_pred             eccCCcccEEEEEECCCCCEEEEecCC---ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE-EEeC
Q 020798           18 TLNGHLRAISSVKFSHDGRLLASSSAD---KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV-SASD   93 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-~~~~   93 (321)
                      .+..|...+.+++|+|||+.|+..+.+   ..+.+|++....      .   ..+....+.....+|+|+|+.|+ +.+.
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~------~---~~l~~~~g~~~~~~~SpDG~~l~~~~s~  268 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ------R---ELVASFRGINGAPSFSPDGRRLALTLSR  268 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC------E---EEeccCCCCccCceECCCCCEEEEEEeC
Confidence            345567789999999999999987643   368888775321      1   11222233345789999998775 4455


Q ss_pred             CC--cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-CCc--EEEEecCCCEEEEEEeCCCCCeeEEEEccC
Q 020798           94 DK--TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-DET--VRIWDVKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        94 d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      ++  .|.+||+.+++. ..+..+.......+|+|||++|+.++. +|.  |+++|+.+++... +..+.......+|+|+
T Consensus       269 ~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpD  346 (433)
T PRK04922        269 DGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPD  346 (433)
T ss_pred             CCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCC
Confidence            55  599999988764 445555555567899999998876653 444  7777776665332 3233344557899999


Q ss_pred             CCEEEEEeCCC---eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC---CeEEEEeCCC
Q 020798          169 GTMIVTSSYDG---LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD---NTLRLWNYST  231 (321)
Q Consensus       169 ~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d---~~i~i~d~~~  231 (321)
                      |+.++..+.++   .|.+||+.+++.. .+...  .......|+|+|++++..+.+   ..|.++++..
T Consensus       347 G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        347 GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG--SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             CCEEEEEECCCCceeEEEEECCCCCeE-ECCCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            99888765433   6899999877643 22221  123456899999988776653   3577777743

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=1.3e-13  Score=113.83  Aligned_cols=197  Identities=21%  Similarity=0.349  Sum_probs=133.7

Q ss_pred             CCCCEEEEEeCCCcEEEEecCCcceeeee----ecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEEEeCCC
Q 020798           83 SDSRFLVSASDDKTIRLWDVPTATCLKTL----IGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPAHS  157 (321)
Q Consensus        83 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  157 (321)
                      +.+--++.|-..|.+.+.|....+..+.+    .--...++|+.|-|.+ ..|+.+-.+|.+++||..-       ....
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~  255 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGA  255 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccC
Confidence            45556778888899999886553221111    1123678999998854 5677788899999998621       1111


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEE
Q 020798          158 DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT  237 (321)
Q Consensus       158 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~  237 (321)
                      .+ .+....+++..+.....-+..      +..++..+... ...+...+|+|||++|++.+.||.++|||..+.+++..
T Consensus       256 t~-p~~~~~k~~~~f~i~t~ksk~------~rNPv~~w~~~-~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~  327 (636)
T KOG2394|consen  256 TA-PSYQALKDGDQFAILTSKSKK------TRNPVARWHIG-EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV  327 (636)
T ss_pred             CC-CcccccCCCCeeEEeeeeccc------cCCccceeEec-cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH
Confidence            11 111223455555433221110      00112222212 23678899999999999999999999999998887766


Q ss_pred             EeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecC
Q 020798          238 YTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP  297 (321)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p  297 (321)
                      ++..-+...|+  + +.|||+++++|++|--|.||.+..++++.+-.+|.+.|..|+|.|
T Consensus       328 mkSYFGGLLCv--c-WSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  328 MKSYFGGLLCV--C-WSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHhhccceEEE--E-EcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            65444444333  3 348999999999999999999999999999999999999999985

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.63  E-value=1.6e-11  Score=102.90  Aligned_cols=243  Identities=16%  Similarity=0.271  Sum_probs=157.6

Q ss_pred             cEEEEEECCCCCEEEEEeC----CCcEEEEecCCc--c--eeeeeecCcccEEEEEECCCCCEEEEee-CCCcEEEEecC
Q 020798           75 GVSDLVFSSDSRFLVSASD----DKTIRLWDVPTA--T--CLKTLIGHTNYVFCVNFNPQSNMIVSGA-FDETVRIWDVK  145 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~  145 (321)
                      ...-++++|++++|++...    ++.|..|.+...  +  .+............++++|++++|+++. .+|.+.++++.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            4566889999999988866    568989887654  2  2223332344456789999999988876 58999999997


Q ss_pred             C-CEEEEE---Ee----------CCCCCeeEEEEccCCCEEEEEe-CCCeEEEEeCCCCc--e--eeeeccCCCCCeEEE
Q 020798          146 T-GKCLKV---LP----------AHSDPVTAVDFNRDGTMIVTSS-YDGLCRIWDASTGH--C--MKTLIDDENPPVSFV  206 (321)
Q Consensus       146 ~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~--~--~~~~~~~~~~~~~~~  206 (321)
                      . +.....   +.          .......++.++|+++++++.. ....|.+|++....  .  ...+..........+
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~  197 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL  197 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence            6 443222   11          1124467899999999877765 45689999886543  2  122333455667899


Q ss_pred             EEccCCCEEEEEe-cCCeEEEEeCC--CCcE--EEEEecc----CCceeEEEeEEEecCCeEEEEe-CCCCeEEEEEccc
Q 020798          207 KFSPNGKFILVGT-LDNTLRLWNYS--TGKI--LKTYTGH----TNSKYCISSTFSVTNGKYIVSG-SEDSCVYLWELQS  276 (321)
Q Consensus       207 ~~~~~g~~l~~~~-~d~~i~i~d~~--~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~  276 (321)
                      .|+|+++++.+.. .++.|.+|++.  +++.  +......    .... ........+||++|.+. -..+.|.+|++..
T Consensus       198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN-APAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS-SEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC-CceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence            9999999987765 47789999987  4432  2222211    1111 12223345788877665 4677899999932


Q ss_pred             --c--eEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          277 --R--KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       277 --~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                        +  +.+..+......-+.++++|+|++|+++..++ +.|.+|+.+
T Consensus       277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-~~v~vf~~d  322 (345)
T PF10282_consen  277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-NTVSVFDID  322 (345)
T ss_dssp             TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-TEEEEEEEE
T ss_pred             CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-CeEEEEEEe
Confidence              3  33444443344469999999999999988764 578888764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=6.9e-12  Score=97.38  Aligned_cols=235  Identities=16%  Similarity=0.318  Sum_probs=153.6

Q ss_pred             EEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE-EEeCC------CcEE
Q 020798           26 ISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV-SASDD------KTIR   98 (321)
Q Consensus        26 v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-~~~~d------~~i~   98 (321)
                      ..+++|+.|..-++++. |...++|.+.....        ......+..++.-+..---.++|+ .|+.+      +.+.
T Consensus         8 ~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke--------~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkvi   78 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKE--------SASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVI   78 (346)
T ss_pred             eeEEEEccCCceEEEEe-cCceEEEecCchhh--------hhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEE
Confidence            34589999988888876 55578897653211        011111122211111111234444 44433      4699


Q ss_pred             EEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC-CCEEEEEEeCCCCCeeEEEEccCC--CEEEE-
Q 020798           99 LWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK-TGKCLKVLPAHSDPVTAVDFNRDG--TMIVT-  174 (321)
Q Consensus        99 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-  174 (321)
                      |||=...+++..+. ...+|..+.+.++  .|++. ..+.|++|... +.+.+..+.....|=--++..|..  ..|+. 
T Consensus        79 IWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP  154 (346)
T KOG2111|consen   79 IWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP  154 (346)
T ss_pred             EEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence            99966666665554 4667889998875  34443 35789999886 344444444333222234445543  34443 


Q ss_pred             EeCCCeEEEEeCCCCce-eeeeccCCCCCeEEEEEccCCCEEEEEecCCe-EEEEeCCCCcEEEEEeccCC--ceeEEEe
Q 020798          175 SSYDGLCRIWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLDNT-LRLWNYSTGKILKTYTGHTN--SKYCISS  250 (321)
Q Consensus       175 ~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~--~~~~~~~  250 (321)
                      |-.-|.|.+-|+...+. ...+...|...|.+++.+.+|..+++++..|+ |||||..++.++..+.....  ..+++  
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i--  232 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI--  232 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE--
Confidence            34679999999976544 23455678889999999999999999999986 89999999999988864333  23443  


Q ss_pred             EEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          251 TFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       251 ~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                       ..+++..+||+.+..|+|.||.++.
T Consensus       233 -aFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  233 -AFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             -EeCCCccEEEEEcCCCeEEEEEeec
Confidence             3458899999999999999999865

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=4.7e-11  Score=94.66  Aligned_cols=271  Identities=13%  Similarity=0.272  Sum_probs=175.3

Q ss_pred             CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC---CcEEEEecCC--cce--eeeeecCcc
Q 020798           44 DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD---KTIRLWDVPT--ATC--LKTLIGHTN  116 (321)
Q Consensus        44 d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~--~~~--~~~~~~~~~  116 (321)
                      ...|.+|++........     ...+-.+...++=|+|+|++++|.++-.+   |.|..|.++.  ++.  +........
T Consensus        15 s~gI~v~~ld~~~g~l~-----~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~   89 (346)
T COG2706          15 SQGIYVFNLDTKTGELS-----LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS   89 (346)
T ss_pred             CCceEEEEEeCcccccc-----hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence            56788888764322111     11222345667889999999999887544   6677777764  442  122222233


Q ss_pred             cEEEEEECCCCCEEEEeeC-CCcEEEEecCC-CEEEE--EEeCCCCC----------eeEEEEccCCCEEEEEe-CCCeE
Q 020798          117 YVFCVNFNPQSNMIVSGAF-DETVRIWDVKT-GKCLK--VLPAHSDP----------VTAVDFNRDGTMIVTSS-YDGLC  181 (321)
Q Consensus       117 ~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~-~dg~i  181 (321)
                      ....+++++++++++++.. .|.|.++.++. |....  .+..|...          +....+.|++++++++. ....|
T Consensus        90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri  169 (346)
T COG2706          90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRI  169 (346)
T ss_pred             CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceE
Confidence            3477899999999988764 57899998865 33221  12234333          78899999999988875 34578


Q ss_pred             EEEeCCCCceeee--eccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCC-cEEEEEec-------cCCceeEEEe
Q 020798          182 RIWDASTGHCMKT--LIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTG-KILKTYTG-------HTNSKYCISS  250 (321)
Q Consensus       182 ~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~-~~~~~~~~-------~~~~~~~~~~  250 (321)
                      .+|++..++....  .....+.....+.|+|++++..+.+ -+++|.+|..... ..+..++.       ..+... .+.
T Consensus       170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~-~aa  248 (346)
T COG2706         170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW-AAA  248 (346)
T ss_pred             EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc-eeE
Confidence            9999987654221  1123445678899999999987766 4889999988763 22222221       122222 233


Q ss_pred             EEEecCCeEEEEeC-CCCeEEEEEccc--ceE--EEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccccC
Q 020798          251 TFSVTNGKYIVSGS-EDSCVYLWELQS--RKV--VQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEKE  321 (321)
Q Consensus       251 ~~~~~~~~~l~~~~-~dg~i~vwd~~~--~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~~  321 (321)
                      ....+||++|.+.. ....|.+|.+..  +++  +.....+...-++..++|.+++|+++.+++| .|.+|..+++
T Consensus       249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd-~i~vf~~d~~  323 (346)
T COG2706         249 IHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD-NITVFERDKE  323 (346)
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC-cEEEEEEcCC
Confidence            44457899998764 234788887753  332  3333445555689999999999999998865 5888877654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.59  E-value=3.1e-13  Score=105.32  Aligned_cols=266  Identities=17%  Similarity=0.226  Sum_probs=160.5

Q ss_pred             ccCCcccEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcE
Q 020798           19 LNGHLRAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTI   97 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i   97 (321)
                      .....+++.+++|||||+ +|.+..-+-.|.+|.+.....         ..++-.+..+..++|+|||++.+.++.-...
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~---------~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCk  157 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG---------YLLPHPKTNVKGYAFHPDGQFCAILSRRDCK  157 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee---------EEecccccCceeEEECCCCceeeeeecccHH
Confidence            345578899999999996 555666788999998864221         1111223456789999999998877643221


Q ss_pred             EEEec---CCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEE
Q 020798           98 RLWDV---PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus        98 ~iwd~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      ..+++   .....++.+.-.+-....+.|+|||+.|+.         ||---.-.+..+ ...-.+..++|+|.+++++.
T Consensus       158 dyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY-e~~lG~k~v~wsP~~qflav  227 (447)
T KOG4497|consen  158 DYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAV  227 (447)
T ss_pred             HHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee-eeccceeEEEeccccceEEe
Confidence            11111   112223333333344567889999887764         442111111111 12245677899999999999


Q ss_pred             EeCCCeEEEEeCCC---------------Cc----------eee-----------------------------------e
Q 020798          175 SSYDGLCRIWDAST---------------GH----------CMK-----------------------------------T  194 (321)
Q Consensus       175 ~~~dg~i~~~d~~~---------------~~----------~~~-----------------------------------~  194 (321)
                      |+.|+.+|+.+--+               ..          .+.                                   .
T Consensus       228 GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~  307 (447)
T KOG4497|consen  228 GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHK  307 (447)
T ss_pred             eccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeec
Confidence            99998877643110               00          000                                   0


Q ss_pred             ec--c---CCCCCeEEEEEccCCCEEEEEec--CCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC
Q 020798          195 LI--D---DENPPVSFVKFSPNGKFILVGTL--DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS  267 (321)
Q Consensus       195 ~~--~---~~~~~~~~~~~~~~g~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  267 (321)
                      +.  .   .....+..++|++|..++++-..  -+.+-+||++..++...+... .+   +......|....|+.+....
T Consensus       308 lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk-~p---iraf~WdP~~prL~vctg~s  383 (447)
T KOG4497|consen  308 LKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQK-HP---IRAFEWDPGRPRLVVCTGKS  383 (447)
T ss_pred             ccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhc-cc---eeEEEeCCCCceEEEEcCCc
Confidence            00  0   00113456899999988877543  357999999887654444221 12   22233345555566666666


Q ss_pred             eEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeec
Q 020798          268 CVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALD  308 (321)
Q Consensus       268 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d  308 (321)
                      .+++|.......+. ..+..-.|.++.|+.+|..++-.+.|
T Consensus       384 rLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kD  423 (447)
T KOG4497|consen  384 RLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKD  423 (447)
T ss_pred             eEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCC
Confidence            79999987655443 23334679999999999999988765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.58  E-value=6e-12  Score=108.87  Aligned_cols=219  Identities=17%  Similarity=0.147  Sum_probs=137.8

Q ss_pred             cccccccccEEEEEECCCCCEEEEEeCC---CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEE-eeCCC--cEE
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFLVSASDD---KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS-GAFDE--TVR  140 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~  140 (321)
                      +.+..+...+...+|+|+|++|+.+...   ..|++||+.+++.. .+..+...+.+++|+|+++.|+. .+.++  .|+
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence            3344556678889999999999877644   47999999887543 23334555667899999987764 44444  588


Q ss_pred             EEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC-CC--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEE
Q 020798          141 IWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-DG--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       141 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  217 (321)
                      +||+.++... .+..+........|+|+++.++..+. .+  .|.++|+.+++.. .+. ..........|+|+|++++.
T Consensus       262 ~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~-~~~~~~~~~~~spdg~~i~~  338 (417)
T TIGR02800       262 VMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT-FRGGYNASPSWSPDGDLIAF  338 (417)
T ss_pred             EEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee-cCCCCccCeEECCCCCEEEE
Confidence            9998876543 33344444567799999998876654 33  5778888766533 222 12233456789999999988


Q ss_pred             EecCC---eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC---eEEEEEcccceEEEEecCCCCCeE
Q 020798          218 GTLDN---TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS---CVYLWELQSRKVVQKLEGHTDPVI  291 (321)
Q Consensus       218 ~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~h~~~v~  291 (321)
                      +..++   .|.+||+.++... .+......   . .....+++++|+..+.++   .+++.+.. ++....+..+...+.
T Consensus       339 ~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~---~-~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~  412 (417)
T TIGR02800       339 VHREGGGFNIAVMDLDGGGER-VLTDTGLD---E-SPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVR  412 (417)
T ss_pred             EEccCCceEEEEEeCCCCCeE-EccCCCCC---C-CceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcC
Confidence            87765   7899998875443 22221111   1 112346787777665543   35555543 344444444444444


Q ss_pred             EEEe
Q 020798          292 SVAS  295 (321)
Q Consensus       292 ~~~~  295 (321)
                      ..+|
T Consensus       413 ~~~w  416 (417)
T TIGR02800       413 EPAW  416 (417)
T ss_pred             CCCC
Confidence            4444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=6.8e-12  Score=108.77  Aligned_cols=221  Identities=13%  Similarity=0.138  Sum_probs=139.9

Q ss_pred             ccccccccEEEEEECCCCCEEEEEeCC---CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCCC--cEEE
Q 020798           68 KFTGHEQGVSDLVFSSDSRFLVSASDD---KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFDE--TVRI  141 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~~  141 (321)
                      .+..+...+....|+|||+.|+..+.+   ..|.+||+.+++.. .+....+......|+|+|+.|+ +...++  .|++
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            344566778899999999998876543   36889999887643 2333333445688999999876 444444  6888


Q ss_pred             EecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC-CC--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE
Q 020798          142 WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-DG--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG  218 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  218 (321)
                      ||+.+++.. .+..+........|+|+++.++..+. ++  .|+++|+.+++...... . ........|+|+|++++..
T Consensus       272 ~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~-~~~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        272 MDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-V-GNYNARPRLSADGKTLVMV  348 (430)
T ss_pred             EECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-C-CCCccceEECCCCCEEEEE
Confidence            899877644 34445555667899999998776653 33  57777887765432221 1 1223356899999999876


Q ss_pred             ecC-C--eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC---CeEEEEEcccceEEEEecCCCCCeEE
Q 020798          219 TLD-N--TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED---SCVYLWELQSRKVVQKLEGHTDPVIS  292 (321)
Q Consensus       219 ~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~  292 (321)
                      ..+ +  .|.++|+.+++... +... ....  ...+ .+||+.++..+.+   ..|.++++.. .....+..+.+.+..
T Consensus       349 ~~~~~~~~l~~~dl~tg~~~~-lt~~-~~~~--~p~~-spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~  422 (430)
T PRK00178        349 HRQDGNFHVAAQDLQRGSVRI-LTDT-SLDE--SPSV-APNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVRE  422 (430)
T ss_pred             EccCCceEEEEEECCCCCEEE-ccCC-CCCC--CceE-CCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCC
Confidence            643 2  58889988776432 3221 1111  1223 4678777655433   3466777643 333445555566777


Q ss_pred             EEecCC
Q 020798          293 VASHPT  298 (321)
Q Consensus       293 ~~~~p~  298 (321)
                      .+|+|-
T Consensus       423 p~ws~~  428 (430)
T PRK00178        423 PSWSPY  428 (430)
T ss_pred             CccCCC
Confidence            788764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.56  E-value=1.9e-10  Score=96.50  Aligned_cols=250  Identities=15%  Similarity=0.272  Sum_probs=154.2

Q ss_pred             ccEEEEEECCCCCEEEEecC----CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe-CCCcEE
Q 020798           24 RAISSVKFSHDGRLLASSSA----DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS-DDKTIR   98 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~----d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~-~d~~i~   98 (321)
                      ...+-++++|++++|.+..+    ++.|..|.+....    .....+............++++|++++|+++. .+|.|.
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~----g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~  112 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT----GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVS  112 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT----TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc----ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEE
Confidence            34556889999999988766    5688888765311    11122222222334567799999999998886 488999


Q ss_pred             EEecCC-cceeee--ee-----------cCcccEEEEEECCCCCEEEEee-CCCcEEEEecCCCE--EE--EEEe-CCCC
Q 020798           99 LWDVPT-ATCLKT--LI-----------GHTNYVFCVNFNPQSNMIVSGA-FDETVRIWDVKTGK--CL--KVLP-AHSD  158 (321)
Q Consensus        99 iwd~~~-~~~~~~--~~-----------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~--~~--~~~~-~~~~  158 (321)
                      ++++.. +.....  ..           .......++.++|+++++++.. ....|++|++....  ..  ..+. ....
T Consensus       113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~  192 (345)
T PF10282_consen  113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS  192 (345)
T ss_dssp             EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred             EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence            999976 332221  11           1234578899999999887754 34578999987654  21  2222 2334


Q ss_pred             CeeEEEEccCCCEEEEEe-CCCeEEEEeCC--CCce--eeeecc---C--CCCCeEEEEEccCCCEEEEEe-cCCeEEEE
Q 020798          159 PVTAVDFNRDGTMIVTSS-YDGLCRIWDAS--TGHC--MKTLID---D--ENPPVSFVKFSPNGKFILVGT-LDNTLRLW  227 (321)
Q Consensus       159 ~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~--~~~~--~~~~~~---~--~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~  227 (321)
                      ....++|+|+++++++.. .+++|.++++.  .+..  ...+..   .  .......++++|+|++|.++. .++.|.+|
T Consensus       193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf  272 (345)
T PF10282_consen  193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF  272 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred             CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence            568899999999776554 57889999887  3322  111111   1  112467899999999988876 46789999


Q ss_pred             eCC--CCcE--EEEEeccCCceeEEEeEEEecCCeEEEEeC-CCCeEEEEEcc--cceEE
Q 020798          228 NYS--TGKI--LKTYTGHTNSKYCISSTFSVTNGKYIVSGS-EDSCVYLWELQ--SRKVV  280 (321)
Q Consensus       228 d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~--~~~~~  280 (321)
                      ++.  ++++  +..+.......  -. ....++|++|++++ .++.|.+|++.  ++.+.
T Consensus       273 ~~d~~~g~l~~~~~~~~~G~~P--r~-~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  273 DLDPATGTLTLVQTVPTGGKFP--RH-FAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             EECTTTTTEEEEEEEEESSSSE--EE-EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             EEecCCCceEEEEEEeCCCCCc--cE-EEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence            983  3433  33333211112  22 22347888887665 66789999874  55543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.1e-11  Score=107.31  Aligned_cols=220  Identities=15%  Similarity=0.168  Sum_probs=137.1

Q ss_pred             cccccccEEEEEECCCCCEEEEEeCC-C--cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEE-eeCCCc--EEEE
Q 020798           69 FTGHEQGVSDLVFSSDSRFLVSASDD-K--TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS-GAFDET--VRIW  142 (321)
Q Consensus        69 ~~~h~~~i~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~~w  142 (321)
                      +..+...+....|+|||+.|+..+.+ +  .|.+||+.+++.. .+...........|+|||+.|+. .+.++.  |+++
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            34455678889999999988866543 3  5888898877642 22222223346789999998764 455664  7888


Q ss_pred             ecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC-CC--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe
Q 020798          143 DVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-DG--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       143 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      |+.+++.. .+..+.......+|+|+++.++..+. ++  .+.++|+.+++... +... ........|+|+|++++..+
T Consensus       292 dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~-g~~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        292 DIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE-GEQNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-CCCCcCeeECCCCCEEEEEE
Confidence            88877643 34444555677899999998776553 33  56667877665432 2111 12223468999999987765


Q ss_pred             c-CC--eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeC-CCC--eEEEEEcccceEEEEecCCCCCeEEE
Q 020798          220 L-DN--TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS-EDS--CVYLWELQSRKVVQKLEGHTDPVISV  293 (321)
Q Consensus       220 ~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~  293 (321)
                      . ++  .|.++|+.+++... +.... ...  ...+ .++|+.|+..+ .+|  .+++++. .++....+..+.+.+...
T Consensus       369 ~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~--~ps~-spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p  442 (448)
T PRK04792        369 RTNGKFNIARQDLETGAMQV-LTSTR-LDE--SPSV-APNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSP  442 (448)
T ss_pred             ecCCceEEEEEECCCCCeEE-ccCCC-CCC--CceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCC
Confidence            4 33  46667887776432 22211 111  1123 46777766543 333  3677776 455566676666677888


Q ss_pred             EecCC
Q 020798          294 ASHPT  298 (321)
Q Consensus       294 ~~~p~  298 (321)
                      +|+|-
T Consensus       443 ~Wsp~  447 (448)
T PRK04792        443 AWSPF  447 (448)
T ss_pred             ccCCC
Confidence            88874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.55  E-value=5.9e-12  Score=108.92  Aligned_cols=197  Identities=21%  Similarity=0.226  Sum_probs=130.4

Q ss_pred             eccCCcccEEEEEECCCCCEEEEecCC---ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE-EeC
Q 020798           18 TLNGHLRAISSVKFSHDGRLLASSSAD---KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS-ASD   93 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~-~~~   93 (321)
                      .+..+...+...+|+|||++|+.+..+   ..+.+|++....         ...+..+...+..++|+|+|+.|+. .+.
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---------~~~~~~~~~~~~~~~~spDg~~l~~~~~~  254 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---------REKVASFPGMNGAPAFSPDGSKLAVSLSK  254 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEECC
Confidence            344566678899999999999887644   468888775321         1122234455667899999987764 444


Q ss_pred             CC--cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-CC--cEEEEecCCCEEEEEEeCCCCCeeEEEEccC
Q 020798           94 DK--TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-DE--TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        94 d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      ++  .|.+||+.++.. ..+..+........|+|+++.|+..+. ++  .|+++|+.+++.. .+..+........|+|+
T Consensus       255 ~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spd  332 (417)
T TIGR02800       255 DGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPD  332 (417)
T ss_pred             CCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCC
Confidence            44  588889887653 334444444456789999998876553 33  5888888766543 34444556778899999


Q ss_pred             CCEEEEEeCCC---eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCC---eEEEEe
Q 020798          169 GTMIVTSSYDG---LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN---TLRLWN  228 (321)
Q Consensus       169 ~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~---~i~i~d  228 (321)
                      ++.++.++.++   .|.+||+.++.. ..+. .. .......|+|+|++|+....++   .+.+.+
T Consensus       333 g~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~-~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~  395 (417)
T TIGR02800       333 GDLIAFVHREGGGFNIAVMDLDGGGE-RVLT-DT-GLDESPSFAPNGRMILYATTRGGRGVLGLVS  395 (417)
T ss_pred             CCEEEEEEccCCceEEEEEeCCCCCe-EEcc-CC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence            99988887765   788999887543 2221 11 1233457999999988876543   344544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.54  E-value=3.4e-12  Score=106.75  Aligned_cols=191  Identities=18%  Similarity=0.276  Sum_probs=148.0

Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC---CCCeeEEEE------cc--------------CCCEEEEEeCCCeE
Q 020798          125 PQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH---SDPVTAVDF------NR--------------DGTMIVTSSYDGLC  181 (321)
Q Consensus       125 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~v~~~~~------~~--------------~~~~l~~~~~dg~i  181 (321)
                      |...+++....||.+++||...++....+...   .+..++..|      +|              +...++.|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            44568899999999999999988776655321   222333333      22              23467889999999


Q ss_pred             EEEeCCCCceeeeec-cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEE
Q 020798          182 RIWDASTGHCMKTLI-DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYI  260 (321)
Q Consensus       182 ~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (321)
                      .+|+...++....+. ..+..++..+.++.+-..|.+++.|+.+-.|+....+.++.+.+.......   ....+|+..+
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s---l~is~D~~~l  159 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS---LCISPDGKIL  159 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce---EEEcCCCCEE
Confidence            999999988777765 456678888888888888999999999999999999999888776554332   3334789899


Q ss_pred             EEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCC-----CceEEEEeecCCccEEEcccccC
Q 020798          261 VSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT-----ENIIASGALDNDRTVKIWTQEKE  321 (321)
Q Consensus       261 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~-----~~~l~s~~~d~~~~i~iw~~~~~  321 (321)
                      ++++  +.|++||+++.+.+..+.||.++|++++|--+     |.++.++. +..+-|.+|-.++|
T Consensus       160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa-~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA-AAERGITVWVVEKE  222 (541)
T ss_pred             Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecc-ccccceeEEEEEcc
Confidence            8886  67999999999999999999999999999877     67777653 34566888887653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.54  E-value=4.6e-13  Score=118.58  Aligned_cols=192  Identities=20%  Similarity=0.282  Sum_probs=147.4

Q ss_pred             EEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccc----cEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 020798           29 VKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQ----GVSDLVFSSDSRFLVSASDDKTIRLWDVPT  104 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~----~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  104 (321)
                      ..+.-+...++.+..+..+.+|+.......        ........    ...-+-++++.-++++|+.-+.|.+|+...
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~--------~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~  164 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVL--------SKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE  164 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCcee--------hhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence            445556778888888999999987543211        11111111    122234566667899999999999999874


Q ss_pred             cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE-EEeCCCCCeeEEEEccCCCEEEEEeCCCeEEE
Q 020798          105 ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK-VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRI  183 (321)
Q Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  183 (321)
                      ......+.+|.+.++.+.++.+|+++++.+.|..+++|++.+.+... ..-+|...++.+.|.|+  .+++++.|.++++
T Consensus       165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv  242 (967)
T KOG0974|consen  165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV  242 (967)
T ss_pred             cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence            44334688999999999999999999999999999999999877554 55689999999999998  8999999999999


Q ss_pred             EeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 020798          184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST  231 (321)
Q Consensus       184 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~  231 (321)
                      |+.... ....+.......+..++.+++...+++++.|+.+++||+..
T Consensus       243 W~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  243 WGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             Eecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            976543 23344444456788899999999999999999999999753

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.7e-11  Score=106.36  Aligned_cols=198  Identities=18%  Similarity=0.177  Sum_probs=126.2

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCC---ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE-EeCC
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSAD---KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS-ASDD   94 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~-~~~d   94 (321)
                      +..+...+...+|+|||++|+..+.+   ..|.+|++....      ..   .+....+.+....|+|+|+.|+. ...+
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~------~~---~l~~~~g~~~~~~~SpDG~~la~~~~~~  264 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR------RE---QITNFEGLNGAPAWSPDGSKLAFVLSKD  264 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC------EE---EccCCCCCcCCeEECCCCCEEEEEEccC
Confidence            44566788999999999999876543   357777765321      11   12222233456899999998874 4445


Q ss_pred             C--cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-CC--cEEEEecCCCEEEEEEeCCCCCeeEEEEccCC
Q 020798           95 K--TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-DE--TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG  169 (321)
Q Consensus        95 ~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (321)
                      +  .|.+||+.+++. ..+..+........|+|+++.++..+. ++  .|+++|+.+++..... ..........|+|++
T Consensus       265 g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg  342 (430)
T PRK00178        265 GNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADG  342 (430)
T ss_pred             CCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCC
Confidence            5  588889987764 334445555566789999998765543 33  5777888777643322 222233457899999


Q ss_pred             CEEEEEeCC-C--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC---CeEEEEeCC
Q 020798          170 TMIVTSSYD-G--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD---NTLRLWNYS  230 (321)
Q Consensus       170 ~~l~~~~~d-g--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d---~~i~i~d~~  230 (321)
                      +.++....+ +  .+.++|+.+++.. .+.. .. ......|+|+|++++..+.+   ..|.++++.
T Consensus       343 ~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~-~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        343 KTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TS-LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             CEEEEEEccCCceEEEEEECCCCCEE-EccC-CC-CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            988776643 3  5788898876542 2221 11 12245899999998876643   246666654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.53  E-value=1.2e-12  Score=102.55  Aligned_cols=213  Identities=15%  Similarity=0.254  Sum_probs=154.2

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      .+.+.++||.+.|++...-|..+-+.+.+.|.++++|-..+..  ...+.  +  ...-..+++++.+.++.+.|+.|-.
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~--q~wps--I--~~~mP~~~~~~~y~~e~~~L~vg~~   88 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG--QYWPS--I--YHYMPSPCSAMEYVSESRRLYVGQD   88 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccc--ccCch--h--hhhCCCCceEeeeeccceEEEEEEe
Confidence            3566789999999999888888889999999999999543211  11111  1  1112356889999999999999999


Q ss_pred             CCcEEEEecC----CcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC------------------------
Q 020798           94 DKTIRLWDVP----TATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK------------------------  145 (321)
Q Consensus        94 d~~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~------------------------  145 (321)
                      .|++.-+.+.    +-...+....|...+..+-|+....++++++.|..+..--.+                        
T Consensus        89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~  168 (404)
T KOG1409|consen   89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYA  168 (404)
T ss_pred             cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEE
Confidence            9999888653    333445556788888888887777777777776544321111                        


Q ss_pred             -----------------CCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEE
Q 020798          146 -----------------TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKF  208 (321)
Q Consensus       146 -----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  208 (321)
                                       .-..+..+..|.+.+.+++|.|....+.+|..|..+.+||+-..+-.......+...+..+..
T Consensus       169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~  248 (404)
T KOG1409|consen  169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY  248 (404)
T ss_pred             EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence                             112334556788999999999999999999999999999997554444334445555666666


Q ss_pred             ccCCCEEEEEecCCeEEEEeCCCC
Q 020798          209 SPNGKFILVGTLDNTLRLWNYSTG  232 (321)
Q Consensus       209 ~~~g~~l~~~~~d~~i~i~d~~~~  232 (321)
                      .+.-+.+++++.||.|.+|++...
T Consensus       249 ~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  249 AQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhheeeeeccCCCeEEEEeccce
Confidence            667778999999999999998653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1.5e-11  Score=105.48  Aligned_cols=288  Identities=13%  Similarity=0.148  Sum_probs=193.7

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCC-------CCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSD-------STPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      .....|++|+.+..++|.|+.||.+++..+.......       ..+..--+.+.||++.|..+.|+.+.+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            3567899999999999999999999998765422110       011112356789999999999999988999999999


Q ss_pred             cEEEEecCCcceeeee--ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEE
Q 020798           96 TIRLWDVPTATCLKTL--IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV  173 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  173 (321)
                      -|.+|-+.++.....+  ....+.|.+++|+.+|..+.....||.|.+=.+...+.-. -.........+.|++|.+.++
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg-KeLkg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG-KELKGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc-hhcchheccceeecccHHHHH
Confidence            9999998777543332  2345678899999999999988899988776554433211 111122345688999999888


Q ss_pred             EEeCCCeEEEEeCCCCceee-------e---eccCCCCCeEEEEE--------ccCCCEEEEEecCCeEEEEeCCCCcEE
Q 020798          174 TSSYDGLCRIWDASTGHCMK-------T---LIDDENPPVSFVKF--------SPNGKFILVGTLDNTLRLWNYSTGKIL  235 (321)
Q Consensus       174 ~~~~dg~i~~~d~~~~~~~~-------~---~~~~~~~~~~~~~~--------~~~g~~l~~~~~d~~i~i~d~~~~~~~  235 (321)
                      .+-.+|.+.++|-.....++       .   ........+..+.|        -|+...++++..+|.+.+..-.+....
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            88888999999865432110       0   11111112333333        357888999999998888764433222


Q ss_pred             EEEeccCCceeEEEeEEEecCCeEEEEeCCCC---------eEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          236 KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS---------CVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      ..+.  + +...+...| .++|..||.++.+.         .|.+|.. -++.+..++.....|++++|-..|..+|-+-
T Consensus       253 vv~d--t-gm~~vgakW-nh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av  327 (1189)
T KOG2041|consen  253 VVVD--T-GMKIVGAKW-NHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV  327 (1189)
T ss_pred             eEEe--c-ccEeeccee-cCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence            2221  1 122233334 47899999887542         4555553 4666777887888999999998888888763


Q ss_pred             ecCCccEEEcccc
Q 020798          307 LDNDRTVKIWTQE  319 (321)
Q Consensus       307 ~d~~~~i~iw~~~  319 (321)
                         |+.|.+=++.
T Consensus       328 ---dsfiyfanIR  337 (1189)
T KOG2041|consen  328 ---DSFIYFANIR  337 (1189)
T ss_pred             ---cceEEEEeec
Confidence               4566655443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.3e-11  Score=104.51  Aligned_cols=208  Identities=17%  Similarity=0.145  Sum_probs=123.5

Q ss_pred             ccCCcccEEEEEECCCCCEE---EEecCCce--EEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           19 LNGHLRAISSVKFSHDGRLL---ASSSADKT--LLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l---~~~~~d~~--v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      +........+.+|||||+.+   ++...++.  |.+.++...      ....+..   ..+.....+|+|||+.|+..+.
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g------~~~~lt~---~~g~~~~p~wSPDG~~Laf~s~  250 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP------AGKKILA---LQGNQLMPTFSPRKKLLAFISD  250 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC------CceEeec---CCCCccceEECCCCCEEEEEEC
Confidence            34445567788999999752   24444444  444444321      1112222   2334456899999998876543


Q ss_pred             -CC--c--EEEEecCCcc--eeeeee-cCcccEEEEEECCCCCEEEEee-CCCcEEEE--ecCC-CEEEEEEeCCCCCee
Q 020798           94 -DK--T--IRLWDVPTAT--CLKTLI-GHTNYVFCVNFNPQSNMIVSGA-FDETVRIW--DVKT-GKCLKVLPAHSDPVT  161 (321)
Q Consensus        94 -d~--~--i~iwd~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w--d~~~-~~~~~~~~~~~~~v~  161 (321)
                       +|  .  +.+|++..+.  ....+. .........+|+|||+.|+..+ .+|...+|  ++.. +.....+..+...+.
T Consensus       251 ~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~  330 (428)
T PRK01029        251 RYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSS  330 (428)
T ss_pred             CCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCcc
Confidence             23  2  3446765421  122222 2223345678999999877654 45654444  4432 222334444445667


Q ss_pred             EEEEccCCCEEEEEeCC---CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec---CCeEEEEeCCCCcEE
Q 020798          162 AVDFNRDGTMIVTSSYD---GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL---DNTLRLWNYSTGKIL  235 (321)
Q Consensus       162 ~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---d~~i~i~d~~~~~~~  235 (321)
                      ...|+|+|+.++..+.+   ..|.+||+.+++... +.. ....+....|+|+|++|+....   ...|.++|+..++..
T Consensus       331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            88999999988876543   368999998876533 222 2234566889999998876443   346888888776644


Q ss_pred             EE
Q 020798          236 KT  237 (321)
Q Consensus       236 ~~  237 (321)
                      ..
T Consensus       409 ~L  410 (428)
T PRK01029        409 KI  410 (428)
T ss_pred             Ee
Confidence            33

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=2.5e-11  Score=105.10  Aligned_cols=205  Identities=18%  Similarity=0.202  Sum_probs=125.2

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCC-c--eEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE-EeCCC
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSAD-K--TLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS-ASDDK   95 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d-~--~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~-~~~d~   95 (321)
                      ..+...+.+.+|+|||++|+..+.+ +  .|.++++....      ...+..+.   +......|+|||+.|+. ...++
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~------~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g  284 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV------REKVTSFP---GINGAPRFSPDGKKLALVLSKDG  284 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC------eEEecCCC---CCcCCeeECCCCCEEEEEEeCCC
Confidence            3445577889999999998876543 3  46666664321      11122222   22346799999998764 45566


Q ss_pred             c--EEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-CC--cEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC
Q 020798           96 T--IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-DE--TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT  170 (321)
Q Consensus        96 ~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (321)
                      .  |.++|+.+++. ..+..+........|+||++.++..+. ++  .|+++|+.+++... +..........+|+|+|+
T Consensus       285 ~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~  362 (448)
T PRK04792        285 QPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGR  362 (448)
T ss_pred             CeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCC
Confidence            4  77778877764 344445555667899999998765543 33  56777877765433 222222334578999999


Q ss_pred             EEEEEeC-CC--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC-C--eEEEEeCCCCcEEEEEe
Q 020798          171 MIVTSSY-DG--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD-N--TLRLWNYSTGKILKTYT  239 (321)
Q Consensus       171 ~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d-~--~i~i~d~~~~~~~~~~~  239 (321)
                      .++..+. ++  .|.++|+.+++.. .+. ... ......|+|+|+.|+....+ +  .+.+++. +++....+.
T Consensus       363 ~l~~~~~~~g~~~I~~~dl~~g~~~-~lt-~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~  433 (448)
T PRK04792        363 SMIMVNRTNGKFNIARQDLETGAMQ-VLT-STR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP  433 (448)
T ss_pred             EEEEEEecCCceEEEEEECCCCCeE-Ecc-CCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc
Confidence            8877654 34  4556788776532 222 111 12234799999998776543 3  3667775 444444443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=5.6e-12  Score=105.18  Aligned_cols=247  Identities=16%  Similarity=0.222  Sum_probs=166.7

Q ss_pred             eeeeeccCCc--ccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           14 TLTQTLNGHL--RAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        14 ~~~~~~~~h~--~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      ++...+.-|.  ..|.-.-++.|-..++.--.|+.|.+-...+.-..        ..+   ...-.+++++.-..-|+.+
T Consensus        83 nLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~--------~RI---P~~GRDm~y~~~scDly~~  151 (703)
T KOG2321|consen   83 NLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR--------TRI---PKFGRDMKYHKPSCDLYLV  151 (703)
T ss_pred             cceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee--------eec---CcCCccccccCCCccEEEe
Confidence            3334444453  34655666666666655566777765422211100        000   0112456666444445566


Q ss_pred             eCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe------CCCC-----Ce
Q 020798           92 SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP------AHSD-----PV  160 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------~~~~-----~v  160 (321)
                      +....|+-++++.++.+..+....+.++++..++...+|++|+.+|.+-.||.+....+..+.      .|..     .|
T Consensus       152 gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~sv  231 (703)
T KOG2321|consen  152 GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSV  231 (703)
T ss_pred             ecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcc
Confidence            666789999999999888887777899999999999999999999999999998765544432      2222     48


Q ss_pred             eEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC--CCEEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          161 TAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN--GKFILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       161 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      +++.|+.+|-.+++|+.+|.+.+||+++.++...--..-..++..+.|.+.  ++.++ ......++|||-.+|+....+
T Consensus       232 Tal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~-S~Dk~~~kiWd~~~Gk~~asi  310 (703)
T KOG2321|consen  232 TALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV-SMDKRILKIWDECTGKPMASI  310 (703)
T ss_pred             eEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEE-ecchHHhhhcccccCCceeec
Confidence            999999999999999999999999999877655443334457788888775  33343 344567999999999988776


Q ss_pred             eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      ..... .  -..|+. +++.+++++..++.+..|=+..
T Consensus       311 Ept~~-l--ND~C~~-p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  311 EPTSD-L--NDFCFV-PGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             cccCC-c--Cceeee-cCCceEEEecCCCcceeEEccc
Confidence            54332 1  112333 5677788888888777766543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.48  E-value=5.1e-11  Score=99.95  Aligned_cols=189  Identities=16%  Similarity=0.228  Sum_probs=127.3

Q ss_pred             CEE-EEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEE
Q 020798          128 NMI-VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFV  206 (321)
Q Consensus       128 ~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  206 (321)
                      +++ ++-..++.|.+.|..+.+.+..++.....-..+.++||++++++++.||.+.++|+.+.+.+.++...  .....+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceE
Confidence            344 45567899999999999988888865544456789999999999999999999999999988877543  345789


Q ss_pred             EEccCCCEEEEEe-cCCeEEEEeCCCCcEEEEEeccCC----ceeEEEeEEEecCCe-EEEEeCCCCeEEEEEcccceEE
Q 020798          207 KFSPNGKFILVGT-LDNTLRLWNYSTGKILKTYTGHTN----SKYCISSTFSVTNGK-YIVSGSEDSCVYLWELQSRKVV  280 (321)
Q Consensus       207 ~~~~~g~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~  280 (321)
                      +++++|++++++. ..+.+.++|.++.++++.+.....    ....+......+... ++++--..+.|-+.|....+.+
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~  163 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL  163 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence            9999999998876 688999999999999887753211    111233333334444 6666666688888887665432


Q ss_pred             --EEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          281 --QKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       281 --~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                        ..+. ......+..|+|+++++..+.... ..|-++|.+.
T Consensus       164 ~~~~i~-~g~~~~D~~~dpdgry~~va~~~s-n~i~viD~~~  203 (369)
T PF02239_consen  164 KVTTIK-VGRFPHDGGFDPDGRYFLVAANGS-NKIAVIDTKT  203 (369)
T ss_dssp             EEEEEE---TTEEEEEE-TTSSEEEEEEGGG-TEEEEEETTT
T ss_pred             ceeeec-ccccccccccCcccceeeeccccc-ceeEEEeecc
Confidence              2333 345678899999999988876554 3677777653

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.6e-10  Score=99.31  Aligned_cols=223  Identities=17%  Similarity=0.162  Sum_probs=130.0

Q ss_pred             ccccccEEEEEECCCCCE--E-EEEeCCC--cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-CC----cE
Q 020798           70 TGHEQGVSDLVFSSDSRF--L-VSASDDK--TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-DE----TV  139 (321)
Q Consensus        70 ~~h~~~i~~~~~~~~~~~--l-~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i  139 (321)
                      +.......+-.|+|||+.  + ++...++  .|.+.++.+++. ..+....+......|+|||+.|+..+. +|    .+
T Consensus       181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~  259 (428)
T PRK01029        181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFI  259 (428)
T ss_pred             ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeecCCCCccceEECCCCCEEEEEECCCCCcceeE
Confidence            333445567799999975  2 2443443  577778877753 233333444556899999998876542 22    34


Q ss_pred             EEEecCCC---EEEEEEeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEE--eCCC-CceeeeeccCCCCCeEEEEEccCC
Q 020798          140 RIWDVKTG---KCLKVLPAHSDPVTAVDFNRDGTMIVTSS-YDGLCRIW--DAST-GHCMKTLIDDENPPVSFVKFSPNG  212 (321)
Q Consensus       140 ~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~--d~~~-~~~~~~~~~~~~~~~~~~~~~~~g  212 (321)
                      ..|++..+   +...............+|+|||+.|+..+ .+|...+|  ++.. +.....+. .....+....|+|+|
T Consensus       260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG  338 (428)
T PRK01029        260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDG  338 (428)
T ss_pred             EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCccceeECCCC
Confidence            44676542   32222222223446789999999877665 45644444  4432 22222222 222345567899999


Q ss_pred             CEEEEEecC---CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEE-eCC--CCeEEEEEcccceEEEEecCC
Q 020798          213 KFILVGTLD---NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVS-GSE--DSCVYLWELQSRKVVQKLEGH  286 (321)
Q Consensus       213 ~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~--dg~i~vwd~~~~~~~~~~~~h  286 (321)
                      +.|+....+   ..|.+||+.+++....... .....   ...+.+||+.|+. +..  ...|+++|+..++... +...
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~---~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~-Lt~~  413 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKE---SPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK-IVIG  413 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCcc---ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC
Confidence            998876543   4799999988875443322 11111   1223467877664 332  3568888987765433 3333


Q ss_pred             CCCeEEEEecCCC
Q 020798          287 TDPVISVASHPTE  299 (321)
Q Consensus       287 ~~~v~~~~~~p~~  299 (321)
                      .+.+...+|+|..
T Consensus       414 ~g~~~~p~Ws~~~  426 (428)
T PRK01029        414 SGEKRFPSWGAFP  426 (428)
T ss_pred             CCcccCceecCCC
Confidence            4456777888754

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=1.3e-12  Score=108.87  Aligned_cols=287  Identities=16%  Similarity=0.272  Sum_probs=188.4

Q ss_pred             eeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           16 TQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        16 ~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      .+.+.||...|..++--.+.+-+++++.|+++++|.+...-. +..+.....+++.|+.+|.++.|-.+-+++++  -||
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-EIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-ccccceeeeEhhhccCcccceeeeeccceeee--ccC
Confidence            356789999999988777778899999999999999865322 22233455678899999999999999888865  478


Q ss_pred             cEEEEecCCcceeeeee---cC--cccEEEEEECCCCCE-EEEeeCCCcEEEEecCCCEEEEEEe-----CCCCCeeEEE
Q 020798           96 TIRLWDVPTATCLKTLI---GH--TNYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGKCLKVLP-----AHSDPVTAVD  164 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~---~~--~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~-----~~~~~v~~~~  164 (321)
                      -|.+||.-.++.+..+.   .|  .+.|.|+.- -+... ++-|+...+++++|.+..+-...++     ..+.-+.+++
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            89999987766544321   12  223444321 12233 3444788999999999887555443     3345578999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEE-EeCCCCcEEEEEeccCC
Q 020798          165 FNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL-WNYSTGKILKTYTGHTN  243 (321)
Q Consensus       165 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i-~d~~~~~~~~~~~~~~~  243 (321)
                      ..+.|+.++++-.+|.+.+.|.++|+.+..+.. .......++ .|..+.++....|.++.+ |...++...-..+....
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrp-mecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppe  961 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARNGKVINSWRP-MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE  961 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCCCceeccCCc-ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence            999999999999999999999999987665432 122222222 355566777777888888 87666544333322222


Q ss_pred             ceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc----ceEEEEec--CCCCCeEEEEecCCCceEEEEeecCCccEEE
Q 020798          244 SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS----RKVVQKLE--GHTDPVISVASHPTENIIASGALDNDRTVKI  315 (321)
Q Consensus       244 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~i  315 (321)
                      +..     |...-|..|+++.....+.||--..    ...+.+++  ...+..++++--|-+.-+..|..  .|.|.+
T Consensus       962 pah-----flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne--~G~IaL 1032 (1034)
T KOG4190|consen  962 PAH-----FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNE--HGAIAL 1032 (1034)
T ss_pred             chh-----hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCC--CCceee
Confidence            111     1111255567776666777875321    11222332  23456788888888777776763  466765

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=1.4e-10  Score=96.75  Aligned_cols=274  Identities=17%  Similarity=0.311  Sum_probs=164.1

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE-----eC----
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA-----SD----   93 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~-----~~----   93 (321)
                      ..++...++|++|+++|.+. +..++|++.....        .+....  ...++++.|+|-+.+|.+=     -.    
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~--------~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~  102 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK--------VVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNA  102 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc--------EEEEec--cceeeeeeecccccccccccccccccCCCC
Confidence            44577889999999998875 6678888654321        111111  2267899999999988651     11    


Q ss_pred             -CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeE----------
Q 020798           94 -DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTA----------  162 (321)
Q Consensus        94 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~----------  162 (321)
                       .-.+.+|+++++.....+......-++..|+.|..+.+ =-..+.+++|++.+.+.+. -+.|...++.          
T Consensus       103 ~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~  180 (566)
T KOG2315|consen  103 SNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPP  180 (566)
T ss_pred             CCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCc
Confidence             23478999988543333322222225778888764322 2233567777765422111 1112233333          


Q ss_pred             ------------------------------------------EEEccCCCE-EEEE--eCC---------CeEEEEeCCC
Q 020798          163 ------------------------------------------VDFNRDGTM-IVTS--SYD---------GLCRIWDAST  188 (321)
Q Consensus       163 ------------------------------------------~~~~~~~~~-l~~~--~~d---------g~i~~~d~~~  188 (321)
                                                                +.|++.|+- |+.+  .-|         .++++.++..
T Consensus       181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g  260 (566)
T KOG2315|consen  181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG  260 (566)
T ss_pred             eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence                                                      344443331 1111  111         2344444442


Q ss_pred             CceeeeeccCCCCCeEEEEEccCCCEEEEE--ecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeC--
Q 020798          189 GHCMKTLIDDENPPVSFVKFSPNGKFILVG--TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS--  264 (321)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--  264 (321)
                      ..+...+  ....+|.++.|+|+|+.+++.  -.-..+.|||++ ++++..+..  ++..   ..++.+.|++++.++  
T Consensus       261 ~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e--gpRN---~~~fnp~g~ii~lAGFG  332 (566)
T KOG2315|consen  261 ESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE--GPRN---TAFFNPHGNIILLAGFG  332 (566)
T ss_pred             ceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC--CCcc---ceEECCCCCEEEEeecC
Confidence            2222221  235678999999999887654  456789999976 556666542  2222   234557888877654  


Q ss_pred             -CCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeec----CCccEEEcccc
Q 020798          265 -EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALD----NDRTVKIWTQE  319 (321)
Q Consensus       265 -~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d----~~~~i~iw~~~  319 (321)
                       -.|.+.|||+.+.+++.+++...  -+-+.|+|||.+|.|+...    -|..++||+..
T Consensus       333 NL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  333 NLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence             45889999999988888877543  3567899999999998632    24569999864

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=8.6e-12  Score=110.71  Aligned_cols=192  Identities=19%  Similarity=0.277  Sum_probs=145.1

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCccc-----EEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE
Q 020798           79 LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNY-----VFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL  153 (321)
Q Consensus        79 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  153 (321)
                      ..+..+.+.++.++.++.+-+||.........+. +.+.     ..-+-.+++.-++++|+.-+.|.+|+....+....+
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l  171 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRL  171 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCccee
Confidence            3344566788888999999999987665443332 2221     112334566667899999999999998743333357


Q ss_pred             eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc
Q 020798          154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK  233 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~  233 (321)
                      .+|++.+.++.++-+|+++++.+.|.++++|++.+.+......-.|...+..+.+.|.  .+++++.|.+.++|+.. ++
T Consensus       172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~  248 (967)
T KOG0974|consen  172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GT  248 (967)
T ss_pred             cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cc
Confidence            8999999999999999999999999999999999877655334456778888999998  89999999999999754 45


Q ss_pred             EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      .+..+.+|....  +.....+++...++|++.|+.+++|++..
T Consensus       249 ~l~~y~~h~g~~--iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  249 QLEVYDEHSGKG--IWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eehhhhhhhhcc--eeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            556777776532  33344456677889999999999999854

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=1.2e-10  Score=97.08  Aligned_cols=263  Identities=14%  Similarity=0.232  Sum_probs=152.7

Q ss_pred             EEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC-----------CC
Q 020798           27 SSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD-----------DK   95 (321)
Q Consensus        27 ~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-----------d~   95 (321)
                      +-+.|||-|.||+|--.-| |.+|.-        .....++.+. | .+|.-+.|||..+||+|=+.           ..
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG--------~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGG--------ESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecC--------ccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence            4589999999999987555 557732        1122233332 3 46888999999999998542           24


Q ss_pred             cEEEEecCCcceeeeeecC--c-ccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798           96 TIRLWDVPTATCLKTLIGH--T-NYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~~~--~-~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      .++|||+.+|...+.+...  . ..-.-..||.|++++|.-.. ..|.+|+..+-.++-.-...-..|....|+|.++.|
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll  361 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL  361 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence            7999999999877665431  1 12234578999998887655 568888865433222111222345556666665544


Q ss_pred             EEEeC--C---CeEEEEeCCC----------------------Ccee---------------------eeec--------
Q 020798          173 VTSSY--D---GLCRIWDAST----------------------GHCM---------------------KTLI--------  196 (321)
Q Consensus       173 ~~~~~--d---g~i~~~d~~~----------------------~~~~---------------------~~~~--------  196 (321)
                      +-=..  +   ..+.+..+.+                      |..+                     ..+.        
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~  441 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV  441 (698)
T ss_pred             EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence            42110  0   0111111111                      1000                     0000        


Q ss_pred             cCCCCCeEEEEEccCCCEEEEEec---CCeEEEEeCCC-C---cEEEEEeccCCceeEEEeEEEecCCeEEEEe---CCC
Q 020798          197 DDENPPVSFVKFSPNGKFILVGTL---DNTLRLWNYST-G---KILKTYTGHTNSKYCISSTFSVTNGKYIVSG---SED  266 (321)
Q Consensus       197 ~~~~~~~~~~~~~~~g~~l~~~~~---d~~i~i~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~d  266 (321)
                      ......+...+|.|.|..+++-+.   ..++.+|.+.+ .   +++..+..    ..+- ..+..|.|++++.+   +..
T Consensus       442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N-~vfwsPkG~fvvva~l~s~~  516 (698)
T KOG2314|consen  442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFAN-TVFWSPKGRFVVVAALVSRR  516 (698)
T ss_pred             eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccc-eEEEcCCCcEEEEEEecccc
Confidence            011123556788999988776443   34788887763 2   23333321    2222 34555788888765   457


Q ss_pred             CeEEEEEcccceEEE-EecCCCCCeEEEEecCCCceEEEEee
Q 020798          267 SCVYLWELQSRKVVQ-KLEGHTDPVISVASHPTENIIASGAL  307 (321)
Q Consensus       267 g~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~~~  307 (321)
                      |.+.++|+....+.. ....|. ..+.+.|.|.|+|+++++.
T Consensus       517 g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  517 GDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             cceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeee
Confidence            889999987422211 112233 4588999999999999863

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.44  E-value=8.2e-11  Score=90.56  Aligned_cols=265  Identities=15%  Similarity=0.165  Sum_probs=161.4

Q ss_pred             CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC---CCC-EEEEEeCCCcEEEEecCCcceeeeeecC-----
Q 020798           44 DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS---DSR-FLVSASDDKTIRLWDVPTATCLKTLIGH-----  114 (321)
Q Consensus        44 d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~---~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----  114 (321)
                      -|.+.+|++.+.....   ...++ . .....+..+.|..   +|. .++-+-.+|.|.++..........+.+-     
T Consensus        45 ~Gkl~Lys~~d~~~~~---l~~~q-~-~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki  119 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSP---LDTLQ-C-TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI  119 (339)
T ss_pred             ccceEEEeecccccCc---cceee-e-ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence            4567778776543211   11111 1 1234567777763   455 4566677889999876443322222211     


Q ss_pred             -cccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE--EEeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEeCCC-C
Q 020798          115 -TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK--VLPAHSDPVTAVDFNRD-GTMIVTSSYDGLCRIWDAST-G  189 (321)
Q Consensus       115 -~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~-~  189 (321)
                       .....++.|++.+..++++..+|.+.+-+........  .++.|+-+++...|+.. .+.+.+|+.|+.+..||+|. +
T Consensus       120 ~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~  199 (339)
T KOG0280|consen  120 SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK  199 (339)
T ss_pred             hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence             1134578889989999999999999866655554433  77889999999999864 35788999999999999993 3


Q ss_pred             ceeeeeccCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEeCCC-CcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC
Q 020798          190 HCMKTLIDDENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYST-GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS  267 (321)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  267 (321)
                      ..+..-...+...|.++.-+| .+.++++|+.|..|++||.++ ++++..-.. .+.++.+.-  .+.....++.++--.
T Consensus       200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~--~p~~~~~lL~~CMh~  276 (339)
T KOG0280|consen  200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKH--HPEIFHRLLAACMHN  276 (339)
T ss_pred             ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEe--cchhhhHHHHHHHhc
Confidence            333332334556677776665 678999999999999999984 455543322 234444322  111222222233333


Q ss_pred             eEEEEEcccce-----EEEEecCCCCCeEEEEecCCCceEEEEeecCCccEE-Ecc
Q 020798          268 CVYLWELQSRK-----VVQKLEGHTDPVISVASHPTENIIASGALDNDRTVK-IWT  317 (321)
Q Consensus       268 ~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~-iw~  317 (321)
                      -.+|-+.+...     .....+.|.+=...-.|......|||++.= |+.++ +|=
T Consensus       277 G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY-Dk~~~~~Wl  331 (339)
T KOG0280|consen  277 GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY-DKKIRQLWL  331 (339)
T ss_pred             CceEEEecccccchheeeeccccccceeeccccccccceeeeeecc-ccceeeeee
Confidence            34555554332     223345566556666675556789998753 45544 773

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.42  E-value=6.1e-10  Score=93.50  Aligned_cols=191  Identities=19%  Similarity=0.329  Sum_probs=143.8

Q ss_pred             CCCCEEEEEeCCCcEEEEecCCcceeeeeec---CcccEEEEEE------CC--------------CCCEEEEeeCCCcE
Q 020798           83 SDSRFLVSASDDKTIRLWDVPTATCLKTLIG---HTNYVFCVNF------NP--------------QSNMIVSGAFDETV  139 (321)
Q Consensus        83 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~------~~--------------~~~~l~~~~~dg~i  139 (321)
                      |...++|....||.+++|+...++....+..   -++...+..|      +|              +-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567899999999999999988875443321   1222222222      22              23467778889999


Q ss_pred             EEEecCCCEEEEEEe--CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEE
Q 020798          140 RIWDVKTGKCLKVLP--AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       140 ~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  217 (321)
                      .+|+...++....+.  .|.++|.++.++.+-..|.+++.|+.+..|+.......+... .....+..+.++|||..+++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEcCCCCEEEe
Confidence            999999998777664  688999999999888899999999999999998877665553 44566888999999999988


Q ss_pred             EecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEe--cCCeEEEE-eCCCCeEEEEEccc
Q 020798          218 GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV--TNGKYIVS-GSEDSCVYLWELQS  276 (321)
Q Consensus       218 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~dg~i~vwd~~~  276 (321)
                      ++  ++|++||+.+.+.+..|.+|.+++.++.+....  ..|.++++ ...+.-+.+|-+..
T Consensus       162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            75  589999999999999999999988777655431  12455554 44556677887654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.42  E-value=1e-12  Score=122.35  Aligned_cols=195  Identities=14%  Similarity=0.296  Sum_probs=153.9

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeee-cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI-GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV  152 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  152 (321)
                      ..|.++.-+|...+.++|+.||.+++|....++.+.... +-...+..+.|+.+|+.+..+..||.+.+|... .++...
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceec
Confidence            456777778888899999999999999987776554432 223778889999999999999999999999986 556667


Q ss_pred             EeCCCCCeeEEEEccCCCEEEEEe---CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          153 LPAHSDPVTAVDFNRDGTMIVTSS---YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                      .++|+....++.|-.  ..+++++   .++.+.+||.--.....-+-..|...++++++.|..+.|++|+.+|.+.+||+
T Consensus      2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred             cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence            788998888888875  5566654   56789999975332212222456778899999999999999999999999999


Q ss_pred             CCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec
Q 020798          230 STGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE  284 (321)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  284 (321)
                      +..++++.++.-             ....++++|+..|.++||++....+++.+.
T Consensus      2366 rqrql~h~~~~~-------------~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2366 RQRQLRHTFQAL-------------DTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             HHHHHHHHhhhh-------------hhhheeeccCcccceEEEEccccchhhcCc
Confidence            988877776531             145689999999999999998877776654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.41  E-value=9.9e-09  Score=84.52  Aligned_cols=232  Identities=13%  Similarity=0.184  Sum_probs=138.0

Q ss_pred             ECCCCCEEEEEeC----------CCcEEEEecCCcceeeeeecC-------cccEEEEEECCCCCEEEEee-C-CCcEEE
Q 020798           81 FSSDSRFLVSASD----------DKTIRLWDVPTATCLKTLIGH-------TNYVFCVNFNPQSNMIVSGA-F-DETVRI  141 (321)
Q Consensus        81 ~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~-~-dg~i~~  141 (321)
                      ++||++.|+.+..          +..|.+||..+.+....+..-       ......++++|||++++... . +..+.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998876654          788999999999887766531       22234678999999988765 3 688999


Q ss_pred             EecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCC-CCcee-ee--eccC-CCCCeEEEEEcc-CCCEE
Q 020798          142 WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS-TGHCM-KT--LIDD-ENPPVSFVKFSP-NGKFI  215 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~-~~--~~~~-~~~~~~~~~~~~-~g~~l  215 (321)
                      .|+.+++.+..++... ...-...+++. .+ .-+.||......+. +++.. ..  +... ..+-...-.+.+ +|+++
T Consensus       133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~  209 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPD-CYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV  209 (352)
T ss_pred             EECCCCcEEEEEeCCC-CcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence            9999999888776532 11222222111 11 22233333332221 11111 11  1111 000000013455 88888


Q ss_pred             EEEecCCeEEEEeCCCC-----cEEEEEeccCC------ceeEEEeEEEecCCeEEEE-e---------CCCCeEEEEEc
Q 020798          216 LVGTLDNTLRLWNYSTG-----KILKTYTGHTN------SKYCISSTFSVTNGKYIVS-G---------SEDSCVYLWEL  274 (321)
Q Consensus       216 ~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~-~---------~~dg~i~vwd~  274 (321)
                      ++... |+|.+.|+...     +.+..+.....      ..+..  ....++++.+.. .         ...+.|.++|.
T Consensus       210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~  286 (352)
T TIGR02658       210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA  286 (352)
T ss_pred             EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee--EEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence            77766 99999996443     22332221100      01111  223355655554 2         12257999999


Q ss_pred             ccceEEEEecCCCCCeEEEEecCCCc-eEEEEeecCCccEEEccccc
Q 020798          275 QSRKVVQKLEGHTDPVISVASHPTEN-IIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       275 ~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .+++.+..+.. ...+..++++||++ +|.+... .++.|.+.|.+.
T Consensus       287 ~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~-~s~~VsViD~~t  331 (352)
T TIGR02658       287 KTGKRLRKIEL-GHEIDSINVSQDAKPLLYALST-GDKTLYIFDAET  331 (352)
T ss_pred             CCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCC-CCCcEEEEECcC
Confidence            99999988764 45789999999999 7666553 356799988753

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=8.8e-09  Score=82.01  Aligned_cols=251  Identities=13%  Similarity=0.256  Sum_probs=155.2

Q ss_pred             CCcccEEEEEECCCCCEEEEecC---CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC-CCc
Q 020798           21 GHLRAISSVKFSHDGRLLASSSA---DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD-DKT   96 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-d~~   96 (321)
                      .+...++-++|+|+++.|.++-.   +|.+..|.+......    ...+........+...++++++|++++++.. .|.
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~----Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~  112 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR----LTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGS  112 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe----EEEeeccccCCCCCeEEEECCCCCEEEEEEccCce
Confidence            46678889999999999988744   577877776532110    0111111111233377999999999998864 468


Q ss_pred             EEEEecCC-ccee--eeeecCccc----------EEEEEECCCCCEEEEeeC-CCcEEEEecCCCEEEEEEe---CCCCC
Q 020798           97 IRLWDVPT-ATCL--KTLIGHTNY----------VFCVNFNPQSNMIVSGAF-DETVRIWDVKTGKCLKVLP---AHSDP  159 (321)
Q Consensus        97 i~iwd~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~---~~~~~  159 (321)
                      |.++-+.. +...  .....|.+.          +....+.|++++|++... --.|.+|++..+.....-+   .....
T Consensus       113 v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G  192 (346)
T COG2706         113 VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG  192 (346)
T ss_pred             EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCC
Confidence            99998855 3221  122334443          778889999999888753 3468999998776432211   22344


Q ss_pred             eeEEEEccCCCEEEEEe-CCCeEEEEeCCCC--c--eeeeec---c--CCCCCeEEEEEccCCCEEEEEec-CCeEEEEe
Q 020798          160 VTAVDFNRDGTMIVTSS-YDGLCRIWDASTG--H--CMKTLI---D--DENPPVSFVKFSPNGKFILVGTL-DNTLRLWN  228 (321)
Q Consensus       160 v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~--~--~~~~~~---~--~~~~~~~~~~~~~~g~~l~~~~~-d~~i~i~d  228 (321)
                      ...+.|+|++++..+.+ -+++|-+|.....  +  .++.+.   .  ........+.++++|++|.++.. ...|.+|.
T Consensus       193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~  272 (346)
T COG2706         193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS  272 (346)
T ss_pred             cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            57899999999876655 5899999988763  2  122211   1  11234667899999999988753 45788887


Q ss_pred             CCCC-cEEEEEecc-CCceeEEEeEEEecCCeEEEEeCCC-CeEEEEEccc
Q 020798          229 YSTG-KILKTYTGH-TNSKYCISSTFSVTNGKYIVSGSED-SCVYLWELQS  276 (321)
Q Consensus       229 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~  276 (321)
                      +... ..+...... ......-.+.+ .+++++|+++.++ ..|.+|....
T Consensus       273 V~~~~g~L~~~~~~~teg~~PR~F~i-~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         273 VDPDGGKLELVGITPTEGQFPRDFNI-NPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             EcCCCCEEEEEEEeccCCcCCcccee-CCCCCEEEEEccCCCcEEEEEEcC
Confidence            6532 222222111 11111112222 3568888777655 4688887743

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=1.8e-12  Score=108.01  Aligned_cols=213  Identities=16%  Similarity=0.321  Sum_probs=152.9

Q ss_pred             ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC-------cceeeeeecCcccEEEEEECCCCCEEEEeeCCCc
Q 020798           66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT-------ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDET  138 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  138 (321)
                      ++.+.+|...|+.++--.+.+-+++++.|.+|++|.++.       ..|..++..|+.+|..+.|-.+.+.++++  ||-
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            456789999999887777778899999999999999753       23667788999999999998888777754  788


Q ss_pred             EEEEecCCCEEEEEEe--CCCCCeeEEEEccC--CCEEEEE-eCCCeEEEEeCCCCceeeeeccC----CCCCeEEEEEc
Q 020798          139 VRIWDVKTGKCLKVLP--AHSDPVTAVDFNRD--GTMIVTS-SYDGLCRIWDASTGHCMKTLIDD----ENPPVSFVKFS  209 (321)
Q Consensus       139 i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~--~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~  209 (321)
                      |++||.--++....+.  ...+.+..+..-++  ...++.+ +...+++++|.+..+....+...    .+..+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999976666544321  11223333444343  3344444 78899999999987765554322    22347789999


Q ss_pred             cCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEE-EEcccceEEEEec
Q 020798          210 PNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYL-WELQSRKVVQKLE  284 (321)
Q Consensus       210 ~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~~  284 (321)
                      +.|++++++-.+|.|.+.|.++|+.+..+..-.    |-......|..+.|+....|.++.| |..-.+......+
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----cdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPME----CDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCccc----chhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence            999999999999999999999999887764211    1111222355677888888889988 8876665544444

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.37  E-value=3.6e-09  Score=86.97  Aligned_cols=173  Identities=14%  Similarity=0.186  Sum_probs=126.2

Q ss_pred             ECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC-cEEEEecCCccee
Q 020798           31 FSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK-TIRLWDVPTATCL  108 (321)
Q Consensus        31 ~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~  108 (321)
                      |++ +|++++..|. |...+.+....         . ..--+|.++|.-..+..+++-++.|..|| .+-|+|.++++. 
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~---------~-~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-  394 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDG---------Y-SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-  394 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCC---------e-eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-
Confidence            443 6888888874 44545432211         1 11125677788888888888889999999 899999988874 


Q ss_pred             eeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCC----CeEEEE
Q 020798          109 KTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD----GLCRIW  184 (321)
Q Consensus       109 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~  184 (321)
                      +.+...-+.|.++..+|+|++++.+.....|.+.|+.+++....-+...+-|+.++|+|++++++-+-.+    ..|+++
T Consensus       395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikly  474 (668)
T COG4946         395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLY  474 (668)
T ss_pred             EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEE
Confidence            5555566779999999999999999999999999999998655555666789999999999999876544    479999


Q ss_pred             eCCCCceeeeeccCCCCCeEEEEEccCCCEEEE
Q 020798          185 DASTGHCMKTLIDDENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       185 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  217 (321)
                      |..+++..... ... ..-.+-+|.|++++|.-
T Consensus       475 dm~~~Kiy~vT-T~t-a~DfsPaFD~d~ryLYf  505 (668)
T COG4946         475 DMDGGKIYDVT-TPT-AYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             ecCCCeEEEec-CCc-ccccCcccCCCCcEEEE
Confidence            99887654332 111 11223578889888754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=1.5e-11  Score=105.62  Aligned_cols=286  Identities=19%  Similarity=0.342  Sum_probs=177.0

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC--CEEEEEeCCCcEEEE
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS--RFLVSASDDKTIRLW  100 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--~~l~~~~~d~~i~iw  100 (321)
                      .+++.++..+|.|+-+|.++.-|.+.+ |+...    ..++.-+..++  .-.|....|+|..  .+-++......-.+|
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p----~~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkaiiw   96 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYII-DLDDP----FTPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAIIW   96 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEEE-eccCC----CCCceeeeccC--cchhcceecccCCCCceeEEecCcchhhhh
Confidence            467888999999999999988776654 54321    12222222222  2246667787643  344444444556689


Q ss_pred             ecCCc---ceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCE-EEEEEeCCCCCeeEEEEccCCCEEEEE
Q 020798          101 DVPTA---TCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGK-CLKVLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus       101 d~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      ++...   .....+.+|+..+..+.|+|+. ..+++++.|..+..||+++.. ++.....-......++|+.....+++.
T Consensus        97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen   97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence            87543   3334457899999999999875 578999999999999998764 344444444566789998766667777


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEEEEeccC-CceeEEEeEEE
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYSTGKILKTYTGHT-NSKYCISSTFS  253 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~  253 (321)
                      +....+++||++.+.........+...+..+.|.. ....+.+.+.|++++.||..+..........+ .+++.  ..+.
T Consensus       177 shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~--~r~~  254 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWR--GRYL  254 (1081)
T ss_pred             ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCccee--cccc
Confidence            77788999999977655444444555566666654 23457788899999999986543222111111 11111  1111


Q ss_pred             e-cCCeEEEEeCCCCeEEE---------EEccc-ceEEEEecCCCCCeEEEEecCCC----------ceEEEEeecCCcc
Q 020798          254 V-TNGKYIVSGSEDSCVYL---------WELQS-RKVVQKLEGHTDPVISVASHPTE----------NIIASGALDNDRT  312 (321)
Q Consensus       254 ~-~~~~~l~~~~~dg~i~v---------wd~~~-~~~~~~~~~h~~~v~~~~~~p~~----------~~l~s~~~d~~~~  312 (321)
                      + -+|.++.---.+..+.+         |+..+ .+.++.+.||.+.|...-|...+          -.|+|=|  .|..
T Consensus       255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS--kD~~  332 (1081)
T KOG0309|consen  255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS--KDQT  332 (1081)
T ss_pred             ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEee--cCCc
Confidence            1 12222221111123333         44333 35688999999988877664332          2678866  5678


Q ss_pred             EEEcccc
Q 020798          313 VKIWTQE  319 (321)
Q Consensus       313 i~iw~~~  319 (321)
                      +++|-+.
T Consensus       333 lrlWpI~  339 (1081)
T KOG0309|consen  333 LRLWPID  339 (1081)
T ss_pred             eEeeecc
Confidence            9999764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.37  E-value=5.1e-12  Score=117.81  Aligned_cols=199  Identities=13%  Similarity=0.253  Sum_probs=150.7

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccc-ccccccEEEEEECCCCCEEEEEeCCCcEE
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF-TGHEQGVSDLVFSSDSRFLVSASDDKTIR   98 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~~~l~~~~~d~~i~   98 (321)
                      +.|...|.++.=+|...+-+||+.||.++.|......        .+..+ ..-...|+.+.|+.+|+.+..+..||.+.
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~--------~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ--------QVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCC--------eEEEeeccCcchhhhhhhcccCCceeeeccCCcee
Confidence            4466788888889999999999999999999654321        11111 12236788999999999999999999999


Q ss_pred             EEecCCcceeeeeecCcccEEEEEECCCCCEEEEee---CCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEccCCCEEEE
Q 020798           99 LWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA---FDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus        99 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      +|.+. .+.....+.|+.......|-.  ..+++++   .++.+.+||..-. ..-..-.+|.+.++++++.|....|++
T Consensus      2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred             ecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEe
Confidence            99886 455566677887777776654  4566653   5688999996432 111122789999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec
Q 020798          175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG  240 (321)
Q Consensus       175 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~  240 (321)
                      |+.+|.+++||++..+.+..+..          ++ ...++++++..|.++||++..-.++..+..
T Consensus      2354 ggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             cCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            99999999999987665544321          44 566899999999999999988777766643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.36  E-value=8.4e-09  Score=96.05  Aligned_cols=284  Identities=13%  Similarity=0.185  Sum_probs=171.3

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      ...|.++.|-++...+..+..+|.|.+.....     ......+.....-+.+|.+++||||+..|+..+.++++.+-+-
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~-----~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~  149 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDP-----DPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR  149 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccC-----CCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence            45788999999999899999999998873221     0111122222334678999999999999999988888876532


Q ss_pred             C---------------Cccee--------eeeec------------------------CcccEEEEEECCCCCEEEEeeC
Q 020798          103 P---------------TATCL--------KTLIG------------------------HTNYVFCVNFNPQSNMIVSGAF  135 (321)
Q Consensus       103 ~---------------~~~~~--------~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~  135 (321)
                      .               ..+.+        ..+.|                        +...-..++|-.||.+|++.+.
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~  229 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV  229 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence            1               00000        00000                        2223457889999999988764


Q ss_pred             ---C---CcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC---CCeEEEEeCCCCceeeeec---cCCCCCe
Q 020798          136 ---D---ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY---DGLCRIWDASTGHCMKTLI---DDENPPV  203 (321)
Q Consensus       136 ---d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~---~~~~~~~  203 (321)
                         .   ..+++|+- .|........-.+--..++|.|.|+++++...   ...|.+|.- +|.....+.   ......+
T Consensus       230 ~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v  307 (928)
T PF04762_consen  230 EPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKV  307 (928)
T ss_pred             EcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCcee
Confidence               2   47899984 47655444333333457899999998887754   345666653 332211111   1334568


Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEeCCCCcE--EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEc----ccc
Q 020798          204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKI--LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL----QSR  277 (321)
Q Consensus       204 ~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~----~~~  277 (321)
                      ..+.|++++..|++...|. |.+|-..+-..  .+.+....... .....|.+.+...|...+.+|.+..+++    ..+
T Consensus       308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~-~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s  385 (928)
T PF04762_consen  308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES-VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS  385 (928)
T ss_pred             eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC-CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence            8999999999999877555 99998776432  11221111100 0113344444445555555454444332    100


Q ss_pred             ----------------e--EE--------------EEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          278 ----------------K--VV--------------QKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       278 ----------------~--~~--------------~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                                      .  .+              ..+. ...+|.+++|++++..+|+-.  .|+.|.+|..
T Consensus       386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~--~d~~l~~~~~  455 (928)
T PF04762_consen  386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLT--SDGSLSIYEW  455 (928)
T ss_pred             CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEE--CCCCEEEEEe
Confidence                            0  00              1111 246899999999987777655  4577888874

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.36  E-value=1.5e-08  Score=83.54  Aligned_cols=243  Identities=13%  Similarity=0.123  Sum_probs=139.5

Q ss_pred             ECCCCCEEEEecC----------CceEEEeeccccCCCCCC--CCCcccccccccccEEEEEECCCCCEEEEEe-C-CCc
Q 020798           31 FSHDGRLLASSSA----------DKTLLTYSLSSISNSDST--PPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS-D-DKT   96 (321)
Q Consensus        31 ~s~~g~~l~~~~~----------d~~v~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~-~-d~~   96 (321)
                      +||||+.|+++..          +..|.+||..........  +..|...   .......++++|||++|+... . +..
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~---~~~~~~~~~ls~dgk~l~V~n~~p~~~  129 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL---VGTYPWMTSLTPDNKTLLFYQFSPSPA  129 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh---ccCccceEEECCCCCEEEEecCCCCCE
Confidence            8999998877655          788999998765432111  1111100   012234688999999998765 3 689


Q ss_pred             EEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC-CEE-EEE---EeCCCCCeeE-EEEcc-CC
Q 020798           97 IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT-GKC-LKV---LPAHSDPVTA-VDFNR-DG  169 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~-~~~---~~~~~~~v~~-~~~~~-~~  169 (321)
                      |.+.|+.+++.+..+.-.. ...-...+++.. .+ -+.||......+.+ ++. ...   +.....++.. -.|.+ ++
T Consensus       130 V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg  206 (352)
T TIGR02658       130 VGVVDLEGKAFVRMMDVPD-CYHIFPTANDTF-FM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG  206 (352)
T ss_pred             EEEEECCCCcEEEEEeCCC-CcEEEEecCCcc-EE-EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCC
Confidence            9999999998877664322 111111222221 11 12344433322211 111 111   1110111110 03445 77


Q ss_pred             CEEEEEeCCCeEEEEeCCCCc-----eeeeeccC------CCCCeEEEEEccCCCEEEEEe----------cCCeEEEEe
Q 020798          170 TMIVTSSYDGLCRIWDASTGH-----CMKTLIDD------ENPPVSFVKFSPNGKFILVGT----------LDNTLRLWN  228 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~~~~~-----~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~----------~d~~i~i~d  228 (321)
                      +.+..... |.|.+.|+....     ....+...      .......++++++++.+++..          ..+.|.++|
T Consensus       207 ~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD  285 (352)
T TIGR02658       207 RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD  285 (352)
T ss_pred             cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence            66655555 999999964432     11111111      112234489999999888743          225799999


Q ss_pred             CCCCcEEEEEeccCCceeEEEeEEEecCCe-EEEEeC-CCCeEEEEEcccceEEEEec
Q 020798          229 YSTGKILKTYTGHTNSKYCISSTFSVTNGK-YIVSGS-EDSCVYLWELQSRKVVQKLE  284 (321)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~~  284 (321)
                      ..+++.+..+.... ....+   ...+|++ +|++.+ .++.|.++|..+++.++.+.
T Consensus       286 ~~t~kvi~~i~vG~-~~~~i---avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       286 AKTGKRLRKIELGH-EIDSI---NVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             CCCCeEEEEEeCCC-ceeeE---EECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            99999998876432 22222   2346777 776555 67889999999999988873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.35  E-value=5.4e-09  Score=99.04  Aligned_cols=240  Identities=13%  Similarity=0.139  Sum_probs=150.3

Q ss_pred             EEEEECCC-CCEEEEEeCCCcEEEEecCCcceeeeeec--------------CcccEEEEEECCCCCEEEEee-CCCcEE
Q 020798           77 SDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLIG--------------HTNYVFCVNFNPQSNMIVSGA-FDETVR  140 (321)
Q Consensus        77 ~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~-~dg~i~  140 (321)
                      ..+++++. ++.+++-..++.|.++|..... +..+.+              .-.....++++++++.|+.+. ....|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35788764 5667777788899999976442 322221              112346789999888766554 456799


Q ss_pred             EEecCCCEEEEEEeCC-----------------CCCeeEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeeecc-----
Q 020798          141 IWDVKTGKCLKVLPAH-----------------SDPVTAVDFNR-DGTMIVTSSYDGLCRIWDASTGHCMKTLID-----  197 (321)
Q Consensus       141 ~wd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----  197 (321)
                      ++|..++.. ..+...                 -.....++++| ++..+++...++.|++||..++........     
T Consensus       650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~  728 (1057)
T PLN02919        650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN  728 (1057)
T ss_pred             EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence            999877653 222110                 01235789999 556667777889999999877643211000     


Q ss_pred             --C------CCCCeEEEEEccCCCEEEEE-ecCCeEEEEeCCCCcEEEEEecc-------------CCc-----eeEEEe
Q 020798          198 --D------ENPPVSFVKFSPNGKFILVG-TLDNTLRLWNYSTGKILKTYTGH-------------TNS-----KYCISS  250 (321)
Q Consensus       198 --~------~~~~~~~~~~~~~g~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~-------------~~~-----~~~~~~  250 (321)
                        .      .-.....++++|+|+.|+++ ..++.|++||+.++.......+.             .+.     ......
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence              0      01124568999999865554 55789999999876532111000             000     000011


Q ss_pred             EEEecCCeEEEEeCCCCeEEEEEcccceEEEEec-------------CCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          251 TFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE-------------GHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ....++|..+++-..++.|++||..++.......             +......+++++++|+++++-+  .+++|++||
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt--~Nn~Irvid  886 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT--NNSLIRYLD  886 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC--CCCEEEEEE
Confidence            2234678888888999999999998765542211             1123467899999999888755  467999999


Q ss_pred             ccc
Q 020798          318 QEK  320 (321)
Q Consensus       318 ~~~  320 (321)
                      .+.
T Consensus       887 ~~~  889 (1057)
T PLN02919        887 LNK  889 (1057)
T ss_pred             CCC
Confidence            864

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.34  E-value=7.4e-09  Score=88.38  Aligned_cols=261  Identities=12%  Similarity=0.080  Sum_probs=153.5

Q ss_pred             CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeec
Q 020798           34 DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIG  113 (321)
Q Consensus        34 ~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  113 (321)
                      .+.++++++.++.+..+|..+...        +...............  ++..++.++.++.+..+|..+++.+.....
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~--------~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  133 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKR--------LWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL  133 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcE--------eeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence            466788888889998887654321        1111111110111222  456788888999999999998887654432


Q ss_pred             CcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCee-----EEEEccCCCEEEEEeCCCeEEEEeCCC
Q 020798          114 HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVT-----AVDFNRDGTMIVTSSYDGLCRIWDAST  188 (321)
Q Consensus       114 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~~dg~i~~~d~~~  188 (321)
                      ..........  .++.++.+..++.++.||.++++.+-..........     +...  .+..++.+..++.+..+|.++
T Consensus       134 ~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~t  209 (377)
T TIGR03300       134 SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQT  209 (377)
T ss_pred             CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccC
Confidence            2211111111  245677778899999999999987665543222110     1111  124677788889999999988


Q ss_pred             CceeeeeccCCCC---C---eEEEEEcc--CCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEE
Q 020798          189 GHCMKTLIDDENP---P---VSFVKFSP--NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYI  260 (321)
Q Consensus       189 ~~~~~~~~~~~~~---~---~~~~~~~~--~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (321)
                      ++...........   .   ...+.-+|  .+..+++++.++.+..||..+++.+-.......  ...    . ..+..+
T Consensus       210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~--~~p----~-~~~~~v  282 (377)
T TIGR03300       210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY--QGP----A-VDDNRL  282 (377)
T ss_pred             CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc--cCc----e-EeCCEE
Confidence            8754332111000   0   00000011  345777888899999999999987765542111  001    1 135567


Q ss_pred             EEeCCCCeEEEEEcccceEEEEecCCCCC-eEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          261 VSGSEDSCVYLWELQSRKVVQKLEGHTDP-VISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       261 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +.++.+|.|..+|..+++.+.+....... ..+...  .+..|.+++  .+|.|.++|.+
T Consensus       283 yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~--~~G~l~~~d~~  338 (377)
T TIGR03300       283 YVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD--FEGYLHWLSRE  338 (377)
T ss_pred             EEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe--CCCEEEEEECC
Confidence            77889999999999999887655322211 122222  355666665  45788888865

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.34  E-value=1.7e-10  Score=90.73  Aligned_cols=241  Identities=16%  Similarity=0.300  Sum_probs=153.9

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc-----eeeeeecCc------------ccEEEEEECCCCC--EEEEee
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT-----CLKTLIGHT------------NYVFCVNFNPQSN--MIVSGA  134 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~~  134 (321)
                      .-|.++.|..+|.+|++|..+|.|.++.-....     ....++.|.            ..|..+.|.++++  .++...
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            458899999999999999999999999643221     122233332            3467788888764  567778


Q ss_pred             CCCcEEEEecCCCEEEE--------------------EE----------------eCCCCCeeEEEEccCCCEEEEEeCC
Q 020798          135 FDETVRIWDVKTGKCLK--------------------VL----------------PAHSDPVTAVDFNRDGTMIVTSSYD  178 (321)
Q Consensus       135 ~dg~i~~wd~~~~~~~~--------------------~~----------------~~~~~~v~~~~~~~~~~~l~~~~~d  178 (321)
                      .|.+|++|.++......                    .+                ..|.-.|.++.++.|+..++++ .|
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd  184 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD  184 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence            89999999874321100                    00                1345567889999998877655 45


Q ss_pred             CeEEEEeCCCCceeeeecc--CC-----CCCeEEEEEccC-CCEEEEEecCCeEEEEeCCCCcEE----EEEeccCC---
Q 020798          179 GLCRIWDASTGHCMKTLID--DE-----NPPVSFVKFSPN-GKFILVGTLDNTLRLWNYSTGKIL----KTYTGHTN---  243 (321)
Q Consensus       179 g~i~~~d~~~~~~~~~~~~--~~-----~~~~~~~~~~~~-g~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~---  243 (321)
                      =.|.+|.+.-...-..+..  +.     ...|+...|+|. .++++.+++.|+|++-|++...+-    +.+.....   
T Consensus       185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~  264 (433)
T KOG1354|consen  185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS  264 (433)
T ss_pred             eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence            6799998853211111111  11     124677889995 567777888999999999853211    11111111   


Q ss_pred             ------ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc-cceEEEEecCCC------------CCe---EEEEecCCCce
Q 020798          244 ------SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ-SRKVVQKLEGHT------------DPV---ISVASHPTENI  301 (321)
Q Consensus       244 ------~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h~------------~~v---~~~~~~p~~~~  301 (321)
                            -+..++-.-+.++|+++++-.. -+|++||+. ..+.+..+.-|.            +.|   ..++|+.++.+
T Consensus       265 rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~  343 (433)
T KOG1354|consen  265 RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY  343 (433)
T ss_pred             hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence                  1122333334578999986543 589999994 345555544442            223   46889999999


Q ss_pred             EEEEeecCCccEEEccc
Q 020798          302 IASGALDNDRTVKIWTQ  318 (321)
Q Consensus       302 l~s~~~d~~~~i~iw~~  318 (321)
                      +.|||..  ..+++++.
T Consensus       344 v~TGsy~--n~frvf~~  358 (433)
T KOG1354|consen  344 VMTGSYN--NVFRVFNL  358 (433)
T ss_pred             Eeccccc--ceEEEecC
Confidence            9999964  56888874

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.33  E-value=4.3e-09  Score=89.81  Aligned_cols=258  Identities=15%  Similarity=0.145  Sum_probs=151.5

Q ss_pred             CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEE-EEECCCCCEEEEEeCCCcEEEEecCCcceeeeee
Q 020798           34 DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSD-LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI  112 (321)
Q Consensus        34 ~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  112 (321)
                      ++..++.++.++.+..+|..+...        +..... ...+.+ ...  .+..++.++.++.+..||..+++.+....
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~--------~W~~~~-~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  172 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKE--------LWRAKL-SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS  172 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcE--------eeeecc-CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence            456677777888888887643221        111110 011111 111  24467777889999999999888765543


Q ss_pred             cCcccEE-----EEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCC----CCe---eEEEEcc--CCCEEEEEeCC
Q 020798          113 GHTNYVF-----CVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHS----DPV---TAVDFNR--DGTMIVTSSYD  178 (321)
Q Consensus       113 ~~~~~v~-----~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----~~v---~~~~~~~--~~~~l~~~~~d  178 (321)
                      .......     +...  .+..++.+..++.+..+|.++++.+-......    ..+   ..+.-+|  .+..+++++.+
T Consensus       173 ~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~  250 (377)
T TIGR03300       173 RVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ  250 (377)
T ss_pred             cCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC
Confidence            2221110     1111  13467778888999999999887654322110    000   0010011  24577788889


Q ss_pred             CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe
Q 020798          179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK  258 (321)
Q Consensus       179 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (321)
                      |.++.+|..+++..-....  .. ....  ...+..+++++.+|.+..+|..+++.+-.........  .....  ..+.
T Consensus       251 g~l~a~d~~tG~~~W~~~~--~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~--~ssp~--i~g~  321 (377)
T TIGR03300       251 GRVAALDLRSGRVLWKRDA--SS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ--LTAPA--VVGG  321 (377)
T ss_pred             CEEEEEECCCCcEEEeecc--CC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCc--cccCE--EECC
Confidence            9999999998876544321  11 1111  1245677788889999999999998776553211111  11111  1356


Q ss_pred             EEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEc
Q 020798          259 YIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW  316 (321)
Q Consensus       259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw  316 (321)
                      .+++++.+|.|+++|..+++.+.+++.+..++..--.-.+++ |..++  .||.|..+
T Consensus       322 ~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~--~dG~l~~~  376 (377)
T TIGR03300       322 YLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQT--RDGDLYAF  376 (377)
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCE-EEEEe--CCceEEEe
Confidence            788899999999999999999988876665443332223444 44445  35777665

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.33  E-value=2e-08  Score=93.54  Aligned_cols=291  Identities=15%  Similarity=0.254  Sum_probs=168.3

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeecccc----------CCC------------CC---------------CCCCc
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSI----------SNS------------DS---------------TPPSP   65 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~----------~~~------------~~---------------~~~~~   65 (321)
                      ..+|.+++||||++.|+..+.++.+.+....-.          ...            ++               .+..+
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            458999999999999999988888876532100          000            00               00000


Q ss_pred             ---ccccccccccEEEEEECCCCCEEEEEeC---C---CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-
Q 020798           66 ---LQKFTGHEQGVSDLVFSSDSRFLVSASD---D---KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-  135 (321)
Q Consensus        66 ---~~~~~~h~~~i~~~~~~~~~~~l~~~~~---d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  135 (321)
                         ...+. +...-..|+|-.||+++|+.+.   .   +.++||+-+ +........-.+--.+++|.|.|++|++.-. 
T Consensus       200 ~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~  277 (928)
T PF04762_consen  200 KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL  277 (928)
T ss_pred             ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc
Confidence               01122 4445677999999999998764   2   579999865 4433222222233347899999999988753 


Q ss_pred             --CCcEEEEecCCCEEEEEEe----CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce-e-eeeccCCCCCeEEEE
Q 020798          136 --DETVRIWDVKTGKCLKVLP----AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC-M-KTLIDDENPPVSFVK  207 (321)
Q Consensus       136 --dg~i~~wd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~-~~~~~~~~~~~~~~~  207 (321)
                        ...|.+|. ++|-....+.    .....|..+.|++++..|+....|. |.+|-..+..- + +.+.......+..+.
T Consensus       278 ~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~  355 (928)
T PF04762_consen  278 PDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK  355 (928)
T ss_pred             CCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE
Confidence              34566665 4454333332    2356789999999999999877655 99998876542 1 222222233344588


Q ss_pred             EccCC-CEEEEEecCCeEEEEeCC----CC--------cEEEEEeccC---------------------CceeEEEeEEE
Q 020798          208 FSPNG-KFILVGTLDNTLRLWNYS----TG--------KILKTYTGHT---------------------NSKYCISSTFS  253 (321)
Q Consensus       208 ~~~~g-~~l~~~~~d~~i~i~d~~----~~--------~~~~~~~~~~---------------------~~~~~~~~~~~  253 (321)
                      |+|.. ..|.+.+.++.+..++..    .+        ..+..+.+..                     -+.......+.
T Consensus       356 Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~  435 (928)
T PF04762_consen  356 WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFS  435 (928)
T ss_pred             ECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEe
Confidence            99853 445566665666555431    10        0111111110                     00111222333


Q ss_pred             ecCCeEEEEeCCCCeEEEEEcccce--------EEEEec----------CCCCCeEEEEecCCCceEEEEeec-CCccEE
Q 020798          254 VTNGKYIVSGSEDSCVYLWELQSRK--------VVQKLE----------GHTDPVISVASHPTENIIASGALD-NDRTVK  314 (321)
Q Consensus       254 ~~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~----------~h~~~v~~~~~~p~~~~l~s~~~d-~~~~i~  314 (321)
                       +++..+++-..||.|.+|......        ....+.          .-...+..++|..+...++....+ +...+.
T Consensus       436 -~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  514 (928)
T PF04762_consen  436 -PSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV  514 (928)
T ss_pred             -CCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence             455558888999999999854321        111111          113457888887777666665543 345676


Q ss_pred             Eccc
Q 020798          315 IWTQ  318 (321)
Q Consensus       315 iw~~  318 (321)
                      +++.
T Consensus       515 ~~~~  518 (928)
T PF04762_consen  515 LVDI  518 (928)
T ss_pred             EEEe
Confidence            6665

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.33  E-value=6.1e-10  Score=85.86  Aligned_cols=205  Identities=18%  Similarity=0.164  Sum_probs=134.0

Q ss_pred             ccEEEEEEC---CCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEE
Q 020798           24 RAISSVKFS---HDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRL   99 (321)
Q Consensus        24 ~~v~~~~~s---~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~i   99 (321)
                      ..+..+.|.   .+|. .++-+...|.+.+|.........  ...++.....-.....++.|++.+..++++-.+|.+.+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~--~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~  147 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV--HLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG  147 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeee--eecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence            344555554   2455 56667778888888554322111  01111111111112457889999999999999999986


Q ss_pred             EecCCcceee--eeecCcccEEEEEECC-CCCEEEEeeCCCcEEEEecC-CCEEEEE-EeCCCCCeeEEEEcc-CCCEEE
Q 020798          100 WDVPTATCLK--TLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVK-TGKCLKV-LPAHSDPVTAVDFNR-DGTMIV  173 (321)
Q Consensus       100 wd~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~-~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~  173 (321)
                      -+.......+  ..+.|.-+++...|+. +.+.+++|+.|+.+..||++ .++.+.. .+.|...|.++.-+| .+..++
T Consensus       148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~  227 (339)
T KOG0280|consen  148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA  227 (339)
T ss_pred             EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence            6655544433  6788999999999875 35788999999999999999 3333322 456778888888776 466899


Q ss_pred             EEeCCCeEEEEeCCC-CceeeeeccCCCCCeEEEEEccCCC-EEEEEecCCeEEEEeCCCC
Q 020798          174 TSSYDGLCRIWDAST-GHCMKTLIDDENPPVSFVKFSPNGK-FILVGTLDNTLRLWNYSTG  232 (321)
Q Consensus       174 ~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~d~~i~i~d~~~~  232 (321)
                      +|++|-.|++||.|+ ++++..-  .....|..+..+|.-. .++.++.-+-.+|-+....
T Consensus       228 TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  228 TGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK  286 (339)
T ss_pred             EeccccceeeeehhcccCccccC--ccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence            999999999999984 4444332  2346788899988532 2233333334667666543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.32  E-value=3e-10  Score=89.35  Aligned_cols=249  Identities=19%  Similarity=0.345  Sum_probs=173.0

Q ss_pred             CCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe-cCCcceeeeee-cCcccEEEEEECCCCCEEEEeeCCCcEE
Q 020798           63 PSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD-VPTATCLKTLI-GHTNYVFCVNFNPQSNMIVSGAFDETVR  140 (321)
Q Consensus        63 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~  140 (321)
                      +..+..++||.+.+++...-|-.+-+++.+.|.++++|- .+.++....+. .-...++++.+.++...|+++-..|++.
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            345667889999999888888878899999999999995 34444333332 1245678899999988999998999988


Q ss_pred             EEecC----CCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEE
Q 020798          141 IWDVK----TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFIL  216 (321)
Q Consensus       141 ~wd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  216 (321)
                      -+.+.    .....+....|..++..+-|+-..+.+++.+.|..+.-.-.+.+.-+.........  ....+.-.  +..
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~--t~~~~d~~--~~f  169 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA--SALQFDAL--YAF  169 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC--CCCceeeE--EEE
Confidence            88653    23344556788999999999988889999998887643333333211111100000  00111111  445


Q ss_pred             EEecCCeEEEEeC--CCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce-EEEEecCCCCCeEEE
Q 020798          217 VGTLDNTLRLWNY--STGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK-VVQKLEGHTDPVISV  293 (321)
Q Consensus       217 ~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~  293 (321)
                      .|...|.+..-.+  ....++..+.+|.....++   ...+..+.|.+|..|..+.+||+--++ ....+.+|...|..+
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l---~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCL---KWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL  246 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccceEEE---EEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence            5555666555443  3456777888887765543   445677889999999999999996554 346678899999999


Q ss_pred             EecCCCceEEEEeecCCccEEEccccc
Q 020798          294 ASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       294 ~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ..-+.-+.|.+++  +||.|-+|+++.
T Consensus       247 ~~~~~t~~l~S~~--edg~i~~w~mn~  271 (404)
T KOG1409|consen  247 SYAQHTRQLISCG--EDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhheeeeecc--CCCeEEEEeccc
Confidence            9888888899887  568899999864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.32  E-value=8.6e-09  Score=97.67  Aligned_cols=250  Identities=14%  Similarity=0.167  Sum_probs=152.4

Q ss_pred             EEEEECCC-CCEEEEecCCceEEEeeccccCCCCCCCCCcc----cc-cccccccEEEEEECCCCCEEEEE-eCCCcEEE
Q 020798           27 SSVKFSHD-GRLLASSSADKTLLTYSLSSISNSDSTPPSPL----QK-FTGHEQGVSDLVFSSDSRFLVSA-SDDKTIRL   99 (321)
Q Consensus        27 ~~~~~s~~-g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~----~~-~~~h~~~i~~~~~~~~~~~l~~~-~~d~~i~i   99 (321)
                      ..++++++ |+++++-+.++.|.+++...............    -. -..+-.....+++.++++.|+.+ ...+.|++
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            35688874 56667777788898888654211000000000    00 00122345789999988766554 44567999


Q ss_pred             EecCCcceeeeeecC-----------------cccEEEEEECCC-CCEEEEeeCCCcEEEEecCCCEEEEEEeCC-----
Q 020798          100 WDVPTATCLKTLIGH-----------------TNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAH-----  156 (321)
Q Consensus       100 wd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-----  156 (321)
                      +|..++.. ..+.+-                 -.....++++|+ +..+++...++.|++||..++.... +...     
T Consensus       651 id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~  728 (1057)
T PLN02919        651 IDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERN  728 (1057)
T ss_pred             EecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcccc
Confidence            99876642 222110                 112357899994 5566777778899999987765432 1110     


Q ss_pred             ----------CCCeeEEEEccCCC-EEEEEeCCCeEEEEeCCCCceeeeec------------cCC--------CCCeEE
Q 020798          157 ----------SDPVTAVDFNRDGT-MIVTSSYDGLCRIWDASTGHCMKTLI------------DDE--------NPPVSF  205 (321)
Q Consensus       157 ----------~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~------------~~~--------~~~~~~  205 (321)
                                -.....++++|+++ ++++.+.++.|++||+.++.......            ...        -.....
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence                      12345799999988 45556677899999988654221100            000        012357


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCC-----------ceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          206 VKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN-----------SKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       206 ~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      ++++++|+.+++-..++.|++||..++...... +...           ...........++|+.+++.+.++.|++||+
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            889999998888888999999998877654322 1110           0001112233467888888899999999999


Q ss_pred             ccceE
Q 020798          275 QSRKV  279 (321)
Q Consensus       275 ~~~~~  279 (321)
                      .+++.
T Consensus       888 ~~~~~  892 (1057)
T PLN02919        888 NKGEA  892 (1057)
T ss_pred             CCCcc
Confidence            88754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.31  E-value=4e-09  Score=87.31  Aligned_cols=265  Identities=15%  Similarity=0.247  Sum_probs=165.2

Q ss_pred             ccEEEEEECCCCCEEEEecCCce---------------EEEeeccccCCCCCC-----C--CCccc--------------
Q 020798           24 RAISSVKFSHDGRLLASSSADKT---------------LLTYSLSSISNSDST-----P--PSPLQ--------------   67 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d~~---------------v~~~~~~~~~~~~~~-----~--~~~~~--------------   67 (321)
                      ..|.-+.|||.++||.+.+....               +.+||..........     +  ..++.              
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~  151 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG  151 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence            46788899999999999877555               788887654311110     0  00000              


Q ss_pred             -cccccc---------------ccEEEEEECCCCC--EEEE-----EeCCCcEEEEecCCcceeeeeecCcccEEEEEEC
Q 020798           68 -KFTGHE---------------QGVSDLVFSSDSR--FLVS-----ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFN  124 (321)
Q Consensus        68 -~~~~h~---------------~~i~~~~~~~~~~--~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  124 (321)
                       .+.-|+               .+|....|+|.++  .|+.     .+..+.+++|.+..++.+....-....-..+.|+
T Consensus       152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~  231 (561)
T COG5354         152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ  231 (561)
T ss_pred             CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence             001111               4677888888643  3432     4567789999998776654432222223467788


Q ss_pred             CCCCEEEEee-----------CCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEe--CCCeEEEEeCCCCce
Q 020798          125 PQSNMIVSGA-----------FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS--YDGLCRIWDASTGHC  191 (321)
Q Consensus       125 ~~~~~l~~~~-----------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~  191 (321)
                      +.|++|+.--           ...++++++++... +.....-.++|...+|.|.++.+++.+  ....+.++|++.. .
T Consensus       232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l  309 (561)
T COG5354         232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L  309 (561)
T ss_pred             cCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-e
Confidence            8887765311           12467888876333 222224578999999999988776554  6788999999876 2


Q ss_pred             eeeeccCCCCCeEEEEEccCCCEEEEEecC---CeEEEEeCCCCcEEE-EEeccCCceeEEEeEEEecCCeEEEEeC---
Q 020798          192 MKTLIDDENPPVSFVKFSPNGKFILVGTLD---NTLRLWNYSTGKILK-TYTGHTNSKYCISSTFSVTNGKYIVSGS---  264 (321)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d---~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~---  264 (321)
                      . .....  ..-+.+.|+|.+++++.++.|   |.+.+||........ .+.+.. .    ..+-+.++++++.+..   
T Consensus       310 ~-~~~Pe--~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n-~----s~~~wspd~qF~~~~~ts~  381 (561)
T COG5354         310 R-FYFPE--QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN-T----SYCDWSPDGQFYDTDTTSE  381 (561)
T ss_pred             E-EecCC--cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC-c----eEeeccCCceEEEecCCCc
Confidence            2 22211  223457799999999998765   689999987665444 454322 1    2233457888887764   


Q ss_pred             ---CCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          265 ---EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       265 ---~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                         .|..|.|||+.....-        ..+.+.|.|.+++..+.|
T Consensus       382 k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsS  418 (561)
T COG5354         382 KLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSS  418 (561)
T ss_pred             ccccCcceEEEEecCchhh--------hhhhccccCCcccceeec
Confidence               3678999998644321        455666666665554444

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=5.7e-11  Score=101.95  Aligned_cols=234  Identities=14%  Similarity=0.158  Sum_probs=160.1

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcce---------------eeeeecCcccEEEEEECCCCCEEEEeeCCCc
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC---------------LKTLIGHTNYVFCVNFNPQSNMIVSGAFDET  138 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  138 (321)
                      ....++.|+.+..++++|+.||.+++..+.+.+.               -.++.||++.|..+.|+.+...|-+...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            4578999999999999999999999998755321               1246799999999999999999999999999


Q ss_pred             EEEEecCCCEEEEEE--eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEE
Q 020798          139 VRIWDVKTGKCLKVL--PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFIL  216 (321)
Q Consensus       139 i~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  216 (321)
                      |.+|-+-.+.-...+  ....+-|.+++|+.+|..++....||.|.+=.+...+.-..-+.  ......+.|++|.+.++
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHHHH
Confidence            999987665422221  12345688999999999999999999887765554332111111  12234678999998888


Q ss_pred             EEecCCeEEEEeCCCCc-----EEE--EEec-cCC---ceeEE-----EeEEEecCCeEEEEeCCCCeEEEEEcccceEE
Q 020798          217 VGTLDNTLRLWNYSTGK-----ILK--TYTG-HTN---SKYCI-----SSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV  280 (321)
Q Consensus       217 ~~~~d~~i~i~d~~~~~-----~~~--~~~~-~~~---~~~~~-----~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (321)
                      .+-.+|.+.+||.+..-     ...  ...+ ...   ....+     .....+|+...|+.+-.+|.+.+-.-.+....
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            88889999999965320     000  0000 000   00000     01123457778999999998887654433222


Q ss_pred             EEecCCCCCeEEEEecCCCceEEEEeecCC
Q 020798          281 QKLEGHTDPVISVASHPTENIIASGALDND  310 (321)
Q Consensus       281 ~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~  310 (321)
                      ..+.. .-.|.+..|+++|..||.+|.|.|
T Consensus       253 vv~dt-gm~~vgakWnh~G~vLAvcG~~~d  281 (1189)
T KOG2041|consen  253 VVVDT-GMKIVGAKWNHNGAVLAVCGNDSD  281 (1189)
T ss_pred             eEEec-ccEeecceecCCCcEEEEccCccc
Confidence            22221 246889999999999999987644

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=5.6e-09  Score=87.38  Aligned_cols=248  Identities=16%  Similarity=0.291  Sum_probs=155.5

Q ss_pred             EEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC--CEEEE-----EeCCCcEEE
Q 020798           27 SSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS--RFLVS-----ASDDKTIRL   99 (321)
Q Consensus        27 ~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--~~l~~-----~~~d~~i~i   99 (321)
                      .++.|++|..+.|-- ..+.+.+|+.....       .+..  .-|..+|..+.++|.+  .++|+     .+.=..++|
T Consensus       129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~-------~~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri  198 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-VSNEVQFYDLGSFK-------TIQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRI  198 (566)
T ss_pred             cccccccchhhhhhh-hcceEEEEecCCcc-------ceee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEE
Confidence            578888887765433 24568888775411       1111  2356789999999863  34443     344557999


Q ss_pred             EecCCccee-----eeeecCcccEEEEEECCCCCEE---EEeeCC---------CcEEEEecCCCEEEEEEeCCCCCeeE
Q 020798          100 WDVPTATCL-----KTLIGHTNYVFCVNFNPQSNMI---VSGAFD---------ETVRIWDVKTGKCLKVLPAHSDPVTA  162 (321)
Q Consensus       100 wd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l---~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~  162 (321)
                      |.......-     +++.  ...=-.+.|++-|.-|   ++..-|         .++++.+++...+...+ ...++|.+
T Consensus       199 ~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhd  275 (566)
T KOG2315|consen  199 YKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHD  275 (566)
T ss_pred             eccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceE
Confidence            987622110     1111  1111246677766532   222233         36888887743433333 34789999


Q ss_pred             EEEccCCCEEEEEe--CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC---CeEEEEeCCCCcEEEE
Q 020798          163 VDFNRDGTMIVTSS--YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD---NTLRLWNYSTGKILKT  237 (321)
Q Consensus       163 ~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d---~~i~i~d~~~~~~~~~  237 (321)
                      +.|+|+++-|+++.  .-..+.+||++.. .+..+   ...+-+.+-|+|.|++++.++.+   |.+.|||+.+.+.+..
T Consensus       276 v~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~  351 (566)
T KOG2315|consen  276 VTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK  351 (566)
T ss_pred             EEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence            99999998776543  4568899998853 33333   23345678899999999988764   7899999999888888


Q ss_pred             EeccCCceeEEEeEEEecCCeEEEEeCC------CCeEEEEEcccceEEEEecCCCCCeEEEEecCC
Q 020798          238 YTGHTNSKYCISSTFSVTNGKYIVSGSE------DSCVYLWELQSRKVVQKLEGHTDPVISVASHPT  298 (321)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  298 (321)
                      +.....    . .+-+.|||++++|++.      |+.++||+.. |..+..-. ..+.+..+.|-|-
T Consensus       352 ~~a~~t----t-~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~-f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  352 FKAANT----T-VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKM-FKSELLQVEWRPF  411 (566)
T ss_pred             cccCCc----e-EEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhh-hhHhHhheeeeec
Confidence            765432    1 2334589999999875      5678899975 44443221 1125777777654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.25  E-value=1.3e-07  Score=75.65  Aligned_cols=218  Identities=16%  Similarity=0.185  Sum_probs=135.1

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEEC-CCCCEEEEeeCCCcEEEEecCCCEEEEEEeC
Q 020798           78 DLVFSS-DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFN-PQSNMIVSGAFDETVRIWDVKTGKCLKVLPA  155 (321)
Q Consensus        78 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  155 (321)
                      ++.|.+ ++.++++-...+.|..|+..+++... +.. .. ...+++. ++ ..|+.+...+ +.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-PG-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-SS-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-CC-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            467887 67777777788999999998876432 221 22 5666777 55 4555555544 55669888865443332


Q ss_pred             -----CCCCeeEEEEccCCCEEEEEeCC--------CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEE-EecC
Q 020798          156 -----HSDPVTAVDFNRDGTMIVTSSYD--------GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILV-GTLD  221 (321)
Q Consensus       156 -----~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~~~d  221 (321)
                           .......+++.|+|++.++....        |.+..++.. ++.. ..... -...+.++|+|+++.|++ -+..
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~-~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADG-LGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEE-ESSEEEEEEETTSSEEEEEETTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EEecC-cccccceEECCcchheeeccccc
Confidence                 23456789999999977776543        456667766 4322 22222 234678999999997765 4567


Q ss_pred             CeEEEEeCCCCc--E--EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEec-
Q 020798          222 NTLRLWNYSTGK--I--LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASH-  296 (321)
Q Consensus       222 ~~i~i~d~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-  296 (321)
                      +.|..|++....  .  .+.+.................+|.+.++....+.|.+++.. ++++..+......+++++|. 
T Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg  234 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG  234 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred             ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence            889999985322  1  12221111111112333344678888877788999999987 88888777665688999994 


Q ss_pred             CCCc-eEEE
Q 020798          297 PTEN-IIAS  304 (321)
Q Consensus       297 p~~~-~l~s  304 (321)
                      |+.+ +++|
T Consensus       235 ~~~~~L~vT  243 (246)
T PF08450_consen  235 PDGKTLYVT  243 (246)
T ss_dssp             TTSSEEEEE
T ss_pred             CCCCEEEEE
Confidence            5644 4444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.23  E-value=1.7e-10  Score=92.44  Aligned_cols=162  Identities=17%  Similarity=0.316  Sum_probs=110.4

Q ss_pred             EEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE---EEeCCCcEEEEec
Q 020798           26 ISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV---SASDDKTIRLWDV  102 (321)
Q Consensus        26 v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~---~~~~d~~i~iwd~  102 (321)
                      ...+..+|+++++|.+..+....++++.....    ....+...... ..-+++.|..+.....   -++....+.+|..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK----GAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC----cceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            44556789999999998888876666543221    11112221111 1223344444433333   3455556677776


Q ss_pred             CCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE-eCCCCCeeEEEEccCCCEEEEEeCCCeE
Q 020798          103 PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL-PAHSDPVTAVDFNRDGTMIVTSSYDGLC  181 (321)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i  181 (321)
                      ..+. ...+.||-..+..++++||+++++++..|..|++-.....-.+..+ -+|..-|..++.-++. .|++++.|+++
T Consensus       140 ~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tl  217 (390)
T KOG3914|consen  140 DSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTL  217 (390)
T ss_pred             cccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcE
Confidence            6544 3456789999999999999999999999999998665443333333 4699999999987654 58999999999


Q ss_pred             EEEeCCCCceeee
Q 020798          182 RIWDASTGHCMKT  194 (321)
Q Consensus       182 ~~~d~~~~~~~~~  194 (321)
                      ++||+++++++..
T Consensus       218 r~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  218 RLWDITSGKLLDT  230 (390)
T ss_pred             EEEecccCCcccc
Confidence            9999999987644

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=4.6e-08  Score=83.85  Aligned_cols=190  Identities=17%  Similarity=0.116  Sum_probs=115.3

Q ss_pred             cEEEEEECCCCCE-EEEecCC---ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE-eCC--CcE
Q 020798           25 AISSVKFSHDGRL-LASSSAD---KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA-SDD--KTI   97 (321)
Q Consensus        25 ~v~~~~~s~~g~~-l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~-~~d--~~i   97 (321)
                      .....+|+|||+. ++..+.+   ..|.++++....         ...+....+......|+|||+.++.. +.+  ..|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~---------~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  259 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK---------KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI  259 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc---------EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence            6778999999984 6654444   345555553211         11222234445667899999877643 333  467


Q ss_pred             EEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-CC--cEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEE
Q 020798           98 RLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-DE--TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      .++|+.+++. ..+..+........|+|||+.|+..+. .+  .|++.|+.+++..+.... ...  ...|+|+|+.++.
T Consensus       260 y~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~  335 (419)
T PRK04043        260 YLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVY  335 (419)
T ss_pred             EEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEE
Confidence            7778877753 334333333345679999987765543 33  688888887765433221 111  2489999998876


Q ss_pred             EeCC---------CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCC---eEEEEeCC
Q 020798          175 SSYD---------GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN---TLRLWNYS  230 (321)
Q Consensus       175 ~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~---~i~i~d~~  230 (321)
                      ....         ..|.+.|+.++.. ..+... . ......|+|||+.++....++   .+.++++.
T Consensus       336 ~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        336 SSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-G-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             EEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-C-CcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence            6543         3678888877753 333222 1 223578999999887765432   35555654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=4.9e-09  Score=81.76  Aligned_cols=215  Identities=20%  Similarity=0.374  Sum_probs=140.5

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccccccc------------ccEEEEEECCCC--CE
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHE------------QGVSDLVFSSDS--RF   87 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~i~~~~~~~~~--~~   87 (321)
                      ...-|+++.|...|.||++|...|.|.+|.......-+   ......+++|.            ..|..+.|..++  ..
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ce---ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCE---YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccc---hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            34679999999999999999999999998654322111   11223344444            347778887654  35


Q ss_pred             EEEEeCCCcEEEEecCCcc-------------------ee----------------------ee--eecCcccEEEEEEC
Q 020798           88 LVSASDDKTIRLWDVPTAT-------------------CL----------------------KT--LIGHTNYVFCVNFN  124 (321)
Q Consensus        88 l~~~~~d~~i~iwd~~~~~-------------------~~----------------------~~--~~~~~~~v~~~~~~  124 (321)
                      ++..+.|.+|++|.+....                   ++                      .+  ...|.-.+.++.++
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence            6677899999999874320                   00                      00  13566678889999


Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCE---EEEEEeCCC-----CCeeEEEEccCCC-EEEEEeCCCeEEEEeCCCCce----
Q 020798          125 PQSNMIVSGAFDETVRIWDVKTGK---CLKVLPAHS-----DPVTAVDFNRDGT-MIVTSSYDGLCRIWDASTGHC----  191 (321)
Q Consensus       125 ~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~----  191 (321)
                      .|...++++ .|-.|.+|++.-..   .+..++.|.     .-|++..|+|... .+.-.+..|.|++-|++....    
T Consensus       182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            988888775 46789999875322   122233333     3478899999644 555677889999999984211    


Q ss_pred             --eee---------eccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC-cEEEEEecc
Q 020798          192 --MKT---------LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG-KILKTYTGH  241 (321)
Q Consensus       192 --~~~---------~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~  241 (321)
                        ...         ........|..+.|+++|+++++- .-.++++||++.. .++.+++.|
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR-dyltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR-DYLTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe-ccceEEEEecccccCCceeechH
Confidence              000         111122357789999999998753 3457999998754 356665433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.17  E-value=5.7e-08  Score=77.35  Aligned_cols=216  Identities=19%  Similarity=0.185  Sum_probs=135.4

Q ss_pred             CCcEEEEecCCcceeeeeec---CcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC
Q 020798           94 DKTIRLWDVPTATCLKTLIG---HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT  170 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (321)
                      +|+|..||..+++.+.....   ....+ +. ..++++.+++++.++.++.||..+|+.+-.... ..++.... ...+.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            67889999988887766532   12221 11 223466787788999999999999998777665 33322222 22345


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeee-ccCC-C-CCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCce-e
Q 020798          171 MIVTSSYDGLCRIWDASTGHCMKTL-IDDE-N-PPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK-Y  246 (321)
Q Consensus       171 ~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~-~-~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~  246 (321)
                      .++++..++.++.+|..+++..... .... . ...........+..++++..++.|..+|+++|+.+..+....... .
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~  157 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS  157 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence            6677778889999999999877663 2221 1 111222333347788888889999999999999988886643221 0


Q ss_pred             E------EEeEEEecCCeEEEEeCCCCe-EEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          247 C------ISSTFSVTNGKYIVSGSEDSC-VYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       247 ~------~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .      ........++ .+..++.++. +.+ |+.+++.+....  ...+..+ ..+++..|..++  .++.|..||.+
T Consensus       158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~--~~~~l~~~d~~  230 (238)
T PF13360_consen  158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTS--SDGRLYALDLK  230 (238)
T ss_dssp             -EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEE--TTTEEEEEETT
T ss_pred             ceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEe--CCCEEEEEECC
Confidence            0      1112222345 5566666775 555 999998665433  2233332 345667777766  46899999986


Q ss_pred             c
Q 020798          320 K  320 (321)
Q Consensus       320 ~  320 (321)
                      .
T Consensus       231 t  231 (238)
T PF13360_consen  231 T  231 (238)
T ss_dssp             T
T ss_pred             C
Confidence            4

...

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.16  E-value=6.4e-10  Score=89.26  Aligned_cols=162  Identities=20%  Similarity=0.307  Sum_probs=111.7

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCcce-ee--eeecCcccEEEEEECCCCCEEEEe---eCCCcEEEEecCCCEE
Q 020798           76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATC-LK--TLIGHTNYVFCVNFNPQSNMIVSG---AFDETVRIWDVKTGKC  149 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~--~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~~wd~~~~~~  149 (321)
                      ...+..+++++++|.+..+....+++...... .+  ....-....+.+.+..+......+   +....+.+|....+.+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            44566788899999888888877777654432 11  111111122333444333443333   3444455555444333


Q ss_pred             EEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          150 LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       150 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                       ..+-+|-..+++++|+||+++++++..|..|++-.......+..+..+|..-|..++.-++ ..|++++.|++|++||+
T Consensus       145 -~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  145 -EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             -chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence             3345789999999999999999999999999998877766677777777778888887655 45889999999999999


Q ss_pred             CCCcEEEEEe
Q 020798          230 STGKILKTYT  239 (321)
Q Consensus       230 ~~~~~~~~~~  239 (321)
                      .+++.+..+.
T Consensus       223 ~sgk~L~t~d  232 (390)
T KOG3914|consen  223 TSGKLLDTCD  232 (390)
T ss_pred             ccCCcccccc
Confidence            9998876553

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=1.1e-07  Score=81.55  Aligned_cols=192  Identities=13%  Similarity=0.076  Sum_probs=117.5

Q ss_pred             cEEEEEECCCCCE-EEEEeCC---CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEe-eC--CCcEEEEecCCC
Q 020798           75 GVSDLVFSSDSRF-LVSASDD---KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG-AF--DETVRIWDVKTG  147 (321)
Q Consensus        75 ~i~~~~~~~~~~~-l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~--dg~i~~wd~~~~  147 (321)
                      ......|+|||+. ++..+.+   ..|.++|+.+++... +....+......|+|||+.++.. +.  +..|+++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            5667899999985 6544433   468888998876433 33344455667899999876543 32  356888898777


Q ss_pred             EEEEEEeCCCCCeeEEEEccCCCEEEEEeC-CC--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC---
Q 020798          148 KCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-DG--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD---  221 (321)
Q Consensus       148 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d---  221 (321)
                      +.. .+..+........|+|||+.++..+. .+  .|.+.|+.+++..+..... ..   ...|+|+|++++.....   
T Consensus       268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~~---~~~~SPDG~~Ia~~~~~~~~  342 (419)
T PRK04043        268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-KN---NSSVSTYKNYIVYSSRETNN  342 (419)
T ss_pred             cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-Cc---CceECCCCCEEEEEEcCCCc
Confidence            643 34333333445689999997776653 33  5778888876653322211 11   24899999998876543   


Q ss_pred             ------CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC-C--eEEEEEcccc
Q 020798          222 ------NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED-S--CVYLWELQSR  277 (321)
Q Consensus       222 ------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~  277 (321)
                            ..|.+.|+.++... .+.... ..  ....| .|||+.++-.+.+ +  .+.+.++...
T Consensus       343 ~~~~~~~~I~v~d~~~g~~~-~LT~~~-~~--~~p~~-SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        343 EFGKNTFNLYLISTNSDYIR-RLTANG-VN--QFPRF-SSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             ccCCCCcEEEEEECCCCCeE-ECCCCC-Cc--CCeEE-CCCCCEEEEEEccCCcEEEEEEecCCC
Confidence                  36888898877643 333221 11  11223 4788866654332 2  3566666543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.14  E-value=2.7e-07  Score=73.60  Aligned_cols=205  Identities=19%  Similarity=0.266  Sum_probs=133.1

Q ss_pred             EEEECC-CCCEEEEecCCce-EEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC-----CCcEEEE
Q 020798           28 SVKFSH-DGRLLASSSADKT-LLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD-----DKTIRLW  100 (321)
Q Consensus        28 ~~~~s~-~g~~l~~~~~d~~-v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-----d~~i~iw  100 (321)
                      .++.+| .+..++.+..-|. ..++|.............+-+.|.+|.      .|++||++|++.-.     .|.|-||
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEE
Confidence            567777 4455666655553 445666544332222233445566664      79999999998643     4789999


Q ss_pred             ecC-CcceeeeeecCcccEEEEEECCCCCEEEEeeC------------------CCcEEEEecCCCEEEEE--E--eCCC
Q 020798          101 DVP-TATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF------------------DETVRIWDVKTGKCLKV--L--PAHS  157 (321)
Q Consensus       101 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~~wd~~~~~~~~~--~--~~~~  157 (321)
                      |.. +.+.+..+..|.-....+.+.||+..|+.+..                  +..+.+.|..+|+.+..  +  ..|.
T Consensus        83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ  162 (305)
T ss_pred             ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence            998 55566667666666677889999977776532                  23345556677776665  3  2366


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCe-------EEEEeCCCCceeeeec------cCCCCCeEEEEEccCCCEEEEEe-cCCe
Q 020798          158 DPVTAVDFNRDGTMIVTSSYDGL-------CRIWDASTGHCMKTLI------DDENPPVSFVKFSPNGKFILVGT-LDNT  223 (321)
Q Consensus       158 ~~v~~~~~~~~~~~l~~~~~dg~-------i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~l~~~~-~d~~  223 (321)
                      ..+..+++.++|..++..-+.|.       +-+++....  +..+.      ......+-+++++++|.++++++ ..+.
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence            78999999999887766654442       333432221  11111      11234578899999999887666 5678


Q ss_pred             EEEEeCCCCcEEEEEec
Q 020798          224 LRLWNYSTGKILKTYTG  240 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~~  240 (321)
                      +.+||..+++.+.....
T Consensus       241 ~~~~d~~tg~~~~~~~l  257 (305)
T PF07433_consen  241 VAVWDAATGRLLGSVPL  257 (305)
T ss_pred             EEEEECCCCCEeecccc
Confidence            99999999998877643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=6.6e-08  Score=84.33  Aligned_cols=210  Identities=18%  Similarity=0.240  Sum_probs=135.6

Q ss_pred             cceeeeeccCCcccEEEEEECCCC------------CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDG------------RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDL   79 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g------------~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~   79 (321)
                      .+++.+.++.|...|+.++|+|..            -+||++...|.|.+||....        ..+..+..|..++..+
T Consensus        44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--------s~~~~l~~~~~~~qdl  115 (1062)
T KOG1912|consen   44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--------SVINWLSHSNDSVQDL  115 (1062)
T ss_pred             hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--------hhhhhhcCCCcchhhe
Confidence            456677888999999999998731            26788888999999987532        2344566677888888


Q ss_pred             EECC---CC-CEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECC-CCCEEEEeeCCCcEEEEecC-------CC
Q 020798           80 VFSS---DS-RFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVK-------TG  147 (321)
Q Consensus        80 ~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~-------~~  147 (321)
                      .|-+   +. ..|++-.....+.+|+..+|+.............|+.+.| |.+.+..-+..|.+.+-+.-       .+
T Consensus       116 ~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg  195 (1062)
T KOG1912|consen  116 CWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG  195 (1062)
T ss_pred             eeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence            8865   34 4566666778899999999987666555556677788887 44445444555666555431       12


Q ss_pred             EEEEEEeCCCC-------------------------CeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCC
Q 020798          148 KCLKVLPAHSD-------------------------PVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPP  202 (321)
Q Consensus       148 ~~~~~~~~~~~-------------------------~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  202 (321)
                      +..+.-..|.+                         ....++|+|.-+.++.......+.++|++-..++....-+. ..
T Consensus       196 k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier-~~  274 (1062)
T KOG1912|consen  196 KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER-GG  274 (1062)
T ss_pred             eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc-CC
Confidence            22222222211                         01246778876666666667778999987665554443222 23


Q ss_pred             eEEEEEccCC--CEEEEEecCCeEEEEeCC
Q 020798          203 VSFVKFSPNG--KFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       203 ~~~~~~~~~g--~~l~~~~~d~~i~i~d~~  230 (321)
                      +..+.+-|++  ..|++...||.+.+|-.+
T Consensus       275 akfv~vlP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  275 AKFVDVLPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             cceeEeccCCCcceEEEEecCCeEEEEEee
Confidence            4455565554  457778888888888543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.13  E-value=2.9e-09  Score=80.91  Aligned_cols=204  Identities=16%  Similarity=0.220  Sum_probs=117.4

Q ss_pred             EEEEEECCCCCEEEEecCCceEEEeeccccCC----CCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           26 ISSVKFSHDGRLLASSSADKTLLTYSLSSISN----SDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        26 v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~----~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      ++.+.++-+. .|+++-.++.+......+...    .......+...+..|...-.+-+.+-.+..++++..||.+.+++
T Consensus        39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            5566665443 455555555554433222100    00011112233333433333333444566799999999999998


Q ss_pred             cCCccee-eeee-cCcccEEEEEECCCCCEEEEeeC-----CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC-EEE
Q 020798          102 VPTATCL-KTLI-GHTNYVFCVNFNPQSNMIVSGAF-----DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT-MIV  173 (321)
Q Consensus       102 ~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~  173 (321)
                      .+.-..+ ..+. .|.+. .+.++...++.+.++..     -+..+.|+++..+...........|++++-+|..+ .++
T Consensus       118 ~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~  196 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC  196 (319)
T ss_pred             chHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence            7652111 1111 12211 12223334455544321     23455566554332221122234588899898755 566


Q ss_pred             EEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEeCCC
Q 020798          174 TSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYST  231 (321)
Q Consensus       174 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~~i~i~d~~~  231 (321)
                      +|+.||.+.+||.++......++..+...+..+.|+| ++..|+++++||.+..||..+
T Consensus       197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            7889999999999987666666677888899999999 567899999999999999764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=3.8e-08  Score=82.55  Aligned_cols=235  Identities=15%  Similarity=0.240  Sum_probs=152.8

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-----------CCcEEEEecC
Q 020798           77 SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-----------DETVRIWDVK  145 (321)
Q Consensus        77 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~~wd~~  145 (321)
                      +-+.|||-|.||++--.-| |.+|--.+...++.+. |. .+.-+.|||+.++|++=+.           ...+.+||++
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            4588999999999887766 8899766655444443 44 4778999999999987442           2579999999


Q ss_pred             CCEEEEEEeCCCC--Ce-eEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec--
Q 020798          146 TGKCLKVLPAHSD--PV-TAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL--  220 (321)
Q Consensus       146 ~~~~~~~~~~~~~--~v-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--  220 (321)
                      +|.....++....  .+ .-+.|+.|+++++.-.. ..|.+|+..+-..+.. ..-....|....|+|.++.|+.-..  
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-Kslki~gIr~FswsP~~~llAYwtpe~  368 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-KSLKISGIRDFSWSPTSNLLAYWTPET  368 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc-cccCCccccCcccCCCcceEEEEcccc
Confidence            9998887765322  22 24689999998887666 5688998765322211 1112345778899999988876432  


Q ss_pred             ---CCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEe----------CCCCeEEEEEcccceEEEEecCCC
Q 020798          221 ---DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG----------SEDSCVYLWELQSRKVVQKLEGHT  287 (321)
Q Consensus       221 ---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~dg~i~vwd~~~~~~~~~~~~h~  287 (321)
                         -..+.+..+.+++.++.-..+.-..   +-+++-.+|.+|+.-          +.-..+.|+.++.....-..-...
T Consensus       369 ~~~parvtL~evPs~~~iRt~nlfnVsD---ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk  445 (698)
T KOG2314|consen  369 NNIPARVTLMEVPSKREIRTKNLFNVSD---CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK  445 (698)
T ss_pred             cCCcceEEEEecCccceeeeccceeeec---cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence               1357777877777777654433221   112333567776642          112235666665544322222346


Q ss_pred             CCeEEEEecCCCceEEEEe-ecCCccEEEcccc
Q 020798          288 DPVISVASHPTENIIASGA-LDNDRTVKIWTQE  319 (321)
Q Consensus       288 ~~v~~~~~~p~~~~l~s~~-~d~~~~i~iw~~~  319 (321)
                      ..|...+|-|.|+.+++-+ .+...++.+|-.|
T Consensus       446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e  478 (698)
T KOG2314|consen  446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE  478 (698)
T ss_pred             hheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence            7899999999998877754 3334567777665

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.11  E-value=1.4e-09  Score=93.98  Aligned_cols=244  Identities=21%  Similarity=0.365  Sum_probs=155.0

Q ss_pred             cEEEEEECCCC--CE-EEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC-CEEEEEeCCCcEEEE
Q 020798           25 AISSVKFSHDG--RL-LASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS-RFLVSASDDKTIRLW  100 (321)
Q Consensus        25 ~v~~~~~s~~g--~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d~~i~iw  100 (321)
                      .|....|+|..  .+ +++.+ ...-.+|.+..     .........+.+|..+|+++.|+|.. ..+++++.|..+..|
T Consensus        69 ~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~-----ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~w  142 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAK-----SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAW  142 (1081)
T ss_pred             hhcceecccCCCCceeEEecC-cchhhhhhhhc-----CCccceEEEEecCccceeccccCCCCCcceeeccccccceee
Confidence            56778888754  33 44444 44445676653     12223334567999999999999865 478899999999999


Q ss_pred             ecCCcc-eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEccC-CCEEEEEeC
Q 020798          101 DVPTAT-CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNRD-GTMIVTSSY  177 (321)
Q Consensus       101 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~  177 (321)
                      |+++.. +.............++|+-...-+.+.+....|++||++.+ .+...++.|...+..++|+.- ...+.+++.
T Consensus       143 d~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~  222 (1081)
T KOG0309|consen  143 DMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN  222 (1081)
T ss_pred             eccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC
Confidence            998764 34444444555677888765444445566778999999876 456677888888888888763 346778999


Q ss_pred             CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEE--EecCCeEE---------EEeCCC-CcEEEEEeccCCce
Q 020798          178 DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILV--GTLDNTLR---------LWNYST-GKILKTYTGHTNSK  245 (321)
Q Consensus       178 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~--~~~d~~i~---------i~d~~~-~~~~~~~~~~~~~~  245 (321)
                      |+++++||................++..-.+.|-|.-..+  --.+..+.         .|+..+ .+++..+.+|...+
T Consensus       223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V  302 (1081)
T KOG0309|consen  223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV  302 (1081)
T ss_pred             CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence            9999999986432222211223344555555553332211  11122333         333332 35788898887543


Q ss_pred             eEEEeEEE---------ecCCeEEEEeCCCCeEEEEEccc
Q 020798          246 YCISSTFS---------VTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       246 ~~~~~~~~---------~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      .  .+.|.         ....-.|+|=+.|..+|+|-+.+
T Consensus       303 ~--eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  303 L--EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             H--HHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            1  11111         01123689999999999998754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.11  E-value=6.2e-08  Score=74.18  Aligned_cols=202  Identities=13%  Similarity=0.064  Sum_probs=133.2

Q ss_pred             EEEECCC-----CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEEC-CCCCEEEEEeCCCcEEEEe
Q 020798           28 SVKFSHD-----GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFS-SDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        28 ~~~~s~~-----g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd  101 (321)
                      .+.|-|.     -.+||.|+.-|...+|.+...+       ..+.....|..+|.-+.=. ...-.+..++.|.++++.+
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-------~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~  144 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTND-------GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMV  144 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcc-------cceeeecccccchhhhhhhcccccceeeccCCcceeEEE
Confidence            4566663     3589999999999999765322       1222233333333221111 1222466788999999998


Q ss_pred             cCCcceeeeeecCcc--cEEEEEECCCCCEEEEeeCCCcEEEEecCCCE-E-EE-EEeCCCCCeeEEEEccCCCEEEEEe
Q 020798          102 VPTATCLKTLIGHTN--YVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK-C-LK-VLPAHSDPVTAVDFNRDGTMIVTSS  176 (321)
Q Consensus       102 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~-~~-~~~~~~~~v~~~~~~~~~~~l~~~~  176 (321)
                      ++-+.....  .|..  .+.++.++++++++++.+....|..|.+.... . .. ......+.-.+..|+.....++++.
T Consensus       145 ~~~~s~~~~--~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~  222 (344)
T KOG4532|consen  145 VSGDSNKFA--VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF  222 (344)
T ss_pred             EecCcccce--eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe
Confidence            865543222  2333  37889999999999999999999999886432 2 22 2223334456788999889999999


Q ss_pred             CCCeEEEEeCCCCceee----eeccCCCCCeEEEEEccCCC--EEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          177 YDGLCRIWDASTGHCMK----TLIDDENPPVSFVKFSPNGK--FILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       177 ~dg~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~g~--~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      +||++.+||++.-....    .....+...+..+.|++.|.  +|+..-.-+.+.+.|+++.+..+.+
T Consensus       223 Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  223 QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            99999999998643222    12234567788999998664  3455445578999999988755544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.10  E-value=4.1e-07  Score=70.59  Aligned_cols=240  Identities=13%  Similarity=0.149  Sum_probs=127.3

Q ss_pred             EEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCccee
Q 020798           29 VKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL  108 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  108 (321)
                      ++.+++|+.||+-- |..|.+=.-.+....   .....+..+.....-+.++|+||+.+||.+...|+|+++|+..... 
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~s---i~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-   77 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSS---IIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-   77 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchh---eeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-
Confidence            57789999988764 666655432221100   0000111112223457899999999999999999999999875432 


Q ss_pred             eeee-------cCcccEEEEEECCC------CCEEEEeeCCCcEEEEecCC-----CEEEEEEe---CCCCCeeEEEEcc
Q 020798          109 KTLI-------GHTNYVFCVNFNPQ------SNMIVSGAFDETVRIWDVKT-----GKCLKVLP---AHSDPVTAVDFNR  167 (321)
Q Consensus       109 ~~~~-------~~~~~v~~~~~~~~------~~~l~~~~~dg~i~~wd~~~-----~~~~~~~~---~~~~~v~~~~~~~  167 (321)
                      ..+.       .....|..+.|-+.      ...|++-..+|.++-|-+..     .+....+.   .+...|.++.|+|
T Consensus        78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP  157 (282)
T ss_pred             EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence            2221       11234555555432      22466667788887776532     22333332   2466899999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEE--EEEecCC------eEEEEeCCCCcEEEEEe
Q 020798          168 DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFI--LVGTLDN------TLRLWNYSTGKILKTYT  239 (321)
Q Consensus       168 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l--~~~~~d~------~i~i~d~~~~~~~~~~~  239 (321)
                      ..++|++|+....      ..+.     .......++....-.+..+.  ++...|+      +..+|.+.+.+......
T Consensus       158 ~h~LLlVgG~~~~------~~~~-----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~  226 (282)
T PF15492_consen  158 KHRLLLVGGCEQN------QDGM-----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQG  226 (282)
T ss_pred             CCCEEEEeccCCC------CCcc-----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccc
Confidence            9888887764322      0000     00111122222221111111  1111111      11223222211111111


Q ss_pred             ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC
Q 020798          240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT  287 (321)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~  287 (321)
                      .....++.   .-..|||..||+...+|.|.+|++.+-++..+..-+.
T Consensus       227 ~~~d~i~k---mSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  227 QEQDGIFK---MSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             cCCCceEE---EEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence            11222222   2335899999999999999999998877766555443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=5.5e-09  Score=85.28  Aligned_cols=253  Identities=19%  Similarity=0.239  Sum_probs=167.4

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC-CCcEEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD-DKTIRL   99 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-d~~i~i   99 (321)
                      .|...|+.+.-. -.+++.+++.||.++.|.......     .+.+..+..|-..|.+++.+-++..+.+.+. |..+++
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG-----vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv   80 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG-----VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV   80 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc-----eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence            477777776543 457899999999999996543221     2234556678888999999999999999777 999999


Q ss_pred             EecCCcceeeeee--cCcccEEEEEECCCC--CEEE-EeeCCCcEEEEecCCCE--EEEEEeCCCCCeeEEEEccCCCEE
Q 020798          100 WDVPTATCLKTLI--GHTNYVFCVNFNPQS--NMIV-SGAFDETVRIWDVKTGK--CLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus       100 wd~~~~~~~~~~~--~~~~~v~~~~~~~~~--~~l~-~~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      +|+++.....-+.  -....+ ++..++..  ..++ +.-.++.+.++|-....  ....-..|..+|..+.+++.+..+
T Consensus        81 fDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~  159 (558)
T KOG0882|consen   81 FDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA  159 (558)
T ss_pred             EEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence            9987765332221  111222 12222221  1233 33467889999976543  233345689999999999999999


Q ss_pred             EEEeCCCeEEEEeCCC-Cceeee-----e--------ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          173 VTSSYDGLCRIWDAST-GHCMKT-----L--------IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~-~~~~~~-----~--------~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      ++....|.|..|.... -+..+.     +        .........++.|+|+|..+.+-..|..|++++.+++++++.+
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            9999999999998763 111111     0        0111234567899999999999899999999999998766554


Q ss_pred             eccC-------------------------------CceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEE
Q 020798          239 TGHT-------------------------------NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK  282 (321)
Q Consensus       239 ~~~~-------------------------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  282 (321)
                      ....                               +.......+ +...+.+|+-|+-=| |+|.++.++.+...
T Consensus       240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~-fdes~~flly~t~~g-ikvin~~tn~v~ri  312 (558)
T KOG0882|consen  240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV-FDESGNFLLYGTILG-IKVINLDTNTVVRI  312 (558)
T ss_pred             hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeE-EcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence            3110                               001111222 235677888777655 78888887765543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.07  E-value=2.9e-07  Score=76.63  Aligned_cols=238  Identities=17%  Similarity=0.221  Sum_probs=148.7

Q ss_pred             ccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCC---------------
Q 020798           72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD---------------  136 (321)
Q Consensus        72 h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------  136 (321)
                      -.-++..+.|||.|.+|++....+ |.+|.-.....+..+.  ...|..+.|+|.+++|.+=+..               
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            345678899999999998776554 8899877765444433  3457889999999999874433               


Q ss_pred             CcEEEEecCCCEEEEEEeCCCCC--ee-EEEEccCCCEEEEEeCCCeEEEEeCCCCceee-eeccCCCCCeEEEEEccCC
Q 020798          137 ETVRIWDVKTGKCLKVLPAHSDP--VT-AVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK-TLIDDENPPVSFVKFSPNG  212 (321)
Q Consensus       137 g~i~~wd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~g  212 (321)
                      ..+.+||+.++..+..+.....+  .+ -+.|+-+..+++-. -...++++++ ++.... .+..-....+....++|.+
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~  185 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG  185 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence            35999999999998887665555  44 57788777665533 3346888886 322111 1111112356777888864


Q ss_pred             --CEEEE-----EecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEe-----------CCCCeEEEEEc
Q 020798          213 --KFILV-----GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG-----------SEDSCVYLWEL  274 (321)
Q Consensus       213 --~~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~dg~i~vwd~  274 (321)
                        ..|+.     .+..+++++|.+...+.+.+-.-.....  +..-+. ..|.+|+.-           -....++++++
T Consensus       186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~--~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~  262 (561)
T COG5354         186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG--VQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYLLRI  262 (561)
T ss_pred             CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecc--cEEEEe-cCCceEEEEEEEeeecccceeccceEEEEee
Confidence              33433     3456789999998776655432211111  111122 234333311           02346888888


Q ss_pred             ccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          275 QSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       275 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      ..... .......++|.+.+|.|+++.+++.+--.+..+.++++
T Consensus       263 ~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         263 TERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             ccccc-ceeccccccceeeeecccCCceeEEecccccceeeccc
Confidence            74433 22225678999999999999988876223345555554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.07  E-value=2.2e-07  Score=76.77  Aligned_cols=149  Identities=17%  Similarity=0.236  Sum_probs=112.1

Q ss_pred             CCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCC-cEEEEecCCCEEEEEEeCCCCCeeE
Q 020798           84 DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE-TVRIWDVKTGKCLKVLPAHSDPVTA  162 (321)
Q Consensus        84 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~v~~  162 (321)
                      +|.+++..+. |+..|.+.-.+-.+  ..+|...|.-..+..+++-++.|..|| .+-++|..+++. +.+...-+.|.+
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEE
Confidence            5778877665 55555554333322  235666787777877778888899999 899999887764 445556678999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCC----eEEEEeCCCCcEEEE
Q 020798          163 VDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN----TLRLWNYSTGKILKT  237 (321)
Q Consensus       163 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~----~i~i~d~~~~~~~~~  237 (321)
                      +..+|+|+.++++.....+.+.|+.++.... +-.....-|..+.|+|++++++-+-.+|    .|+++|+..++....
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~-idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL-IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeE-ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            9999999999999999999999999886432 2233345588899999999999887665    699999988776543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.05  E-value=1.1e-06  Score=68.34  Aligned_cols=220  Identities=17%  Similarity=0.277  Sum_probs=125.4

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEecCCc--ceeeeee---cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE
Q 020798           79 LVFSSDSRFLVSASDDKTIRLWDVPTA--TCLKTLI---GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL  153 (321)
Q Consensus        79 ~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  153 (321)
                      ++.+.+|+.||. -.|..|.|-..+..  .++....   .....-..++|+||+..|+.+...|+|+++|+...++ ..+
T Consensus         3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVI   80 (282)
T ss_pred             eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEc
Confidence            566788987764 46667777654332  1222222   2233457899999999999999999999999875443 333


Q ss_pred             eC-------CCCCeeEEEEccC------CCEEEEEeCCCeEEEEeCCC-----Cceeee--eccCCCCCeEEEEEccCCC
Q 020798          154 PA-------HSDPVTAVDFNRD------GTMIVTSSYDGLCRIWDAST-----GHCMKT--LIDDENPPVSFVKFSPNGK  213 (321)
Q Consensus       154 ~~-------~~~~v~~~~~~~~------~~~l~~~~~dg~i~~~d~~~-----~~~~~~--~~~~~~~~~~~~~~~~~g~  213 (321)
                      +.       -..+|..+.|.+.      ...|++-..+|.++=|-+..     .+....  +.......|..+.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            21       1245666666542      12567777888777665421     111111  2223345789999999999


Q ss_pred             EEEEEecCCe-----------EEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEE
Q 020798          214 FILVGTLDNT-----------LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK  282 (321)
Q Consensus       214 ~l~~~~~d~~-----------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  282 (321)
                      +|++|+....           +.-|.+-++.+           +..... . .+...-....   +-.+|.+-+.+...+
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~-~-~~~~~~~~~~---~~~~~~~~~~~~fs~  224 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-----------YYKQVT-S-SEDDITASSK---RRGLLRIPSFKFFSR  224 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCC-----------cEEEcc-c-cCcccccccc---ccceeeccceeeeec
Confidence            9888764321           22222211111           110000 0 0011001111   123444433333222


Q ss_pred             ecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          283 LEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       283 ~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      .......|..+..||||..||+.+.+  |.|.+|++
T Consensus       225 ~~~~~d~i~kmSlSPdg~~La~ih~s--G~lsLW~i  258 (282)
T PF15492_consen  225 QGQEQDGIFKMSLSPDGSLLACIHFS--GSLSLWEI  258 (282)
T ss_pred             cccCCCceEEEEECCCCCEEEEEEcC--CeEEEEec
Confidence            23345679999999999999999864  89999986

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.05  E-value=2.3e-06  Score=68.44  Aligned_cols=198  Identities=18%  Similarity=0.186  Sum_probs=125.6

Q ss_pred             EEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEEC-CCCCEEEEEeCCCcEEEEecCCc
Q 020798           28 SVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFS-SDSRFLVSASDDKTIRLWDVPTA  105 (321)
Q Consensus        28 ~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~  105 (321)
                      +++|.+ ++.++++--..+.|..|+.....         ...+..  .....+++. +++++++ +... .+.++|..++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~---------~~~~~~--~~~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g   70 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE---------VEVIDL--PGPNGMAFDRPDGRLYV-ADSG-GIAVVDPDTG   70 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTE---------EEEEES--SSEEEEEEECTTSEEEE-EETT-CEEEEETTTT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCe---------EEEEec--CCCceEEEEccCCEEEE-EEcC-ceEEEecCCC
Confidence            568888 77777777778888888764321         111111  126677777 6655444 4444 4566698887


Q ss_pred             ceeeeeec-----CcccEEEEEECCCCCEEEEeeCC--------CcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798          106 TCLKTLIG-----HTNYVFCVNFNPQSNMIVSGAFD--------ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus       106 ~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      +.......     .....+.+++.|+|++.++....        |.|..++.. ++...... .-.....++|+|+++.|
T Consensus        71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEE
T ss_pred             cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchhe
Confidence            54332221     34567889999999977775543        557777766 55333332 23456789999999876


Q ss_pred             E-EEeCCCeEEEEeCCCCc--e--eeeeccCCC--CCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc
Q 020798          173 V-TSSYDGLCRIWDASTGH--C--MKTLIDDEN--PPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH  241 (321)
Q Consensus       173 ~-~~~~dg~i~~~d~~~~~--~--~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  241 (321)
                      + +-+..+.|..+++....  .  ...+.....  .....++++.+|++.++....+.|.++|.. ++.+..+...
T Consensus       149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p  223 (246)
T PF08450_consen  149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP  223 (246)
T ss_dssp             EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred             eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence            5 55678889988885321  1  122211112  236789999999988877788999999977 8888877655

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=2e-10  Score=101.03  Aligned_cols=219  Identities=17%  Similarity=0.313  Sum_probs=154.8

Q ss_pred             cccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-CC-cEEEE
Q 020798           65 PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-DE-TVRIW  142 (321)
Q Consensus        65 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg-~i~~w  142 (321)
                      +...+..|....+|++|+...++|+.|+-.|.|++|++.++.......+|.++++.+.-+-+|..+++.+. .. ...+|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            45567778899999999999999999999999999999999988889999999999999999987665543 33 45789


Q ss_pred             ecCC-CEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCC---CCCeEEEEEccCCCEEEEE
Q 020798          143 DVKT-GKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDE---NPPVSFVKFSPNGKFILVG  218 (321)
Q Consensus       143 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~  218 (321)
                      ++.+ +.....+    ..-.++.|+.....-+.|+......+||+.++....+++...   ...-+.+.|+|+..+++- 
T Consensus      1173 ~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1173 DASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred             ccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-
Confidence            8754 2223333    234567887664444556665678899999887665543321   223366889999887763 


Q ss_pred             ecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCC
Q 020798          219 TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT  298 (321)
Q Consensus       219 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  298 (321)
                        ||  .+||++..+.++.|.....   .+...| .|+|..++..+.     |||+++.++++......  -..+.|+..
T Consensus      1248 --dG--vLWDvR~~~aIh~FD~ft~---~~~G~F-HP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNst 1312 (1516)
T KOG1832|consen 1248 --DG--VLWDVRIPEAIHRFDQFTD---YGGGGF-HPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNST 1312 (1516)
T ss_pred             --Cc--eeeeeccHHHHhhhhhhee---cccccc-cCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEeccC
Confidence              55  5899998877777654332   122233 366777776654     89999988876554432  356777777


Q ss_pred             CceEE
Q 020798          299 ENIIA  303 (321)
Q Consensus       299 ~~~l~  303 (321)
                      |+.+-
T Consensus      1313 G~VmY 1317 (1516)
T KOG1832|consen 1313 GDVMY 1317 (1516)
T ss_pred             ccchh
Confidence            76543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=1.3e-07  Score=82.62  Aligned_cols=239  Identities=14%  Similarity=0.159  Sum_probs=158.9

Q ss_pred             EEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC------------CEEEEEeC
Q 020798           26 ISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS------------RFLVSASD   93 (321)
Q Consensus        26 v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~------------~~l~~~~~   93 (321)
                      -.++.|+|.| +||.|+ ...|.+-|.        ...+.++.+..|...|..+.|.|..            -.||++..
T Consensus        18 ~~A~Dw~~~G-LiAygs-hslV~VVDs--------~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~   87 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGS-HSLVSVVDS--------RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI   87 (1062)
T ss_pred             ccccccCccc-eEEEec-CceEEEEeh--------hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence            5568899988 466665 344555543        2344577788899999999998621            14667777


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECC---CC-CEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEcc-C
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP---QS-NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR-D  168 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~  168 (321)
                      .|.|.+||...+..+..+..|...+..++|-|   +. ..|++-.....+.+|+..+|+..-...-......++.+.| +
T Consensus        88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd  167 (1062)
T KOG1912|consen   88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD  167 (1062)
T ss_pred             cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence            89999999988877777778888888888865   23 4566667778999999999987766554445566788888 4


Q ss_pred             CCEEEEEeCCCeEEEEeCCC-------CceeeeeccCCC-------------------CC------eEEEEEccCCCEEE
Q 020798          169 GTMIVTSSYDGLCRIWDAST-------GHCMKTLIDDEN-------------------PP------VSFVKFSPNGKFIL  216 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~-------~~~~~~~~~~~~-------------------~~------~~~~~~~~~g~~l~  216 (321)
                      .+.+..-+..|.+.+-+.-.       ++.++ +..++.                   ..      ...++|+|.-+.++
T Consensus       168 ~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  168 SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             cceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            55676666667666655321       11111 111100                   00      11256788766555


Q ss_pred             EEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          217 VGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       217 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      .......+.++|++-...+....-..+....+...- .+....|.+.-.||.+.+|--+.
T Consensus       247 fi~~prellv~dle~~~~l~vvpier~~akfv~vlP-~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  247 FITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP-DPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEEeccceEEEcchhhceeEEEEeccCCcceeEecc-CCCcceEEEEecCCeEEEEEeec
Confidence            566677899999987777776655444333343321 23456788999999999997644

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=9.6e-08  Score=77.15  Aligned_cols=291  Identities=19%  Similarity=0.216  Sum_probs=159.7

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeecccc--------CCCCCCCCCcccccccccccEEEEEECCCCC-EEEEEe
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSI--------SNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR-FLVSAS   92 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~--------~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~~~~   92 (321)
                      |...-.++.+++..++++.+-.-..+.+-.....        ...+.....+.+.+..|...|.+++|+|..+ ++..++
T Consensus       134 h~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~qa~lpGvGv~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~as  213 (463)
T KOG1645|consen  134 HKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSGQALLPGVGVQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLAS  213 (463)
T ss_pred             hcccceeeeecCCceEEecccccceeeeeccchhhcCCccceEEeccCCcchhhcccccchhhhhhccCccccceeeeec
Confidence            5555666777766655554433322222111100        0112223334556677888999999999877 678899


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEE-EEEe--CCCCCeeEEEEc--
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCL-KVLP--AHSDPVTAVDFN--  166 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~-~~~~--~~~~~v~~~~~~--  166 (321)
                      .+..|+|.|+++..+...+..+ ..+++++|.-+. +++.+|...|.|.+||++..+-. ..+.  ....+|..++..  
T Consensus       214 l~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~  292 (463)
T KOG1645|consen  214 LGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQP  292 (463)
T ss_pred             cCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCc
Confidence            9999999999999888888877 678999998875 56778889999999999865422 1111  112334443332  


Q ss_pred             ----cCCCEEEEEeCCCeEEEEeCCCC--ceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCC---eEE---E-EeCCCC
Q 020798          167 ----RDGTMIVTSSYDGLCRIWDASTG--HCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDN---TLR---L-WNYSTG  232 (321)
Q Consensus       167 ----~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~---~i~---i-~d~~~~  232 (321)
                          +.+.+++....+  +..|.+...  ........+.......+.+++..+.++... .+.   +++   . -|..+|
T Consensus       293 n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG  370 (463)
T KOG1645|consen  293 NKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG  370 (463)
T ss_pred             cccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC
Confidence                234444444332  345554321  111111111122334455555444444432 211   011   1 122233


Q ss_pred             cEEEEEe-ccCCce----eEEEeEEEecCCeE-EEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCC--CceEEE
Q 020798          233 KILKTYT-GHTNSK----YCISSTFSVTNGKY-IVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT--ENIIAS  304 (321)
Q Consensus       233 ~~~~~~~-~~~~~~----~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s  304 (321)
                      ..+-.-. .+.+..    ..-...+.+++..+ +..|.+.+.+.+||..+.+.++.+.- ..+|.++.....  +.+|++
T Consensus       371 ~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~  449 (463)
T KOG1645|consen  371 FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLAL  449 (463)
T ss_pred             ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhh
Confidence            3222111 110100    00011122233344 44566778899999999999888764 478888865433  356666


Q ss_pred             EeecCCccEEEcccc
Q 020798          305 GALDNDRTVKIWTQE  319 (321)
Q Consensus       305 ~~~d~~~~i~iw~~~  319 (321)
                      =.   |..++||.-|
T Consensus       450 LT---d~~v~Iyk~e  461 (463)
T KOG1645|consen  450 LT---DDRVHIYKNE  461 (463)
T ss_pred             ee---cceEEEEecC
Confidence            43   4578888765

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.00  E-value=3.7e-07  Score=70.06  Aligned_cols=217  Identities=11%  Similarity=-0.006  Sum_probs=132.8

Q ss_pred             CEEEEEeCCCcEEEEecCCccee-eeeecCcccEEEEEECCC-CCEEEEeeCCCcEEEEecCCCEEEEEEeCCCC--Cee
Q 020798           86 RFLVSASDDKTIRLWDVPTATCL-KTLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD--PVT  161 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~  161 (321)
                      -+|+.|+..|.+.+|...+.+.. +....|...|.-+.-.-+ ...+..++.|.++++.++..+.....  .|..  .+.
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~n  162 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQN  162 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce--eecccccee
Confidence            47899999999999998866532 222333332221111111 23466678888888888765543322  2333  378


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeCCCC-ceeee-eccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE-
Q 020798          162 AVDFNRDGTMIVTSSYDGLCRIWDASTG-HCMKT-LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY-  238 (321)
Q Consensus       162 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~-  238 (321)
                      +++++++++++++.+....|..|.+... +.... ........--+..|+.....++++..||++.|||++........ 
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            8999999999999999999999988542 22222 22222222346789999999999999999999999875432221 


Q ss_pred             ---ec-cCCceeEEEeEEEecCC--eEEEEeCCCCeEEEEEcccceEEEEe-------cCCC-CCeEEEEecCCCceEEE
Q 020798          239 ---TG-HTNSKYCISSTFSVTNG--KYIVSGSEDSCVYLWELQSRKVVQKL-------EGHT-DPVISVASHPTENIIAS  304 (321)
Q Consensus       239 ---~~-~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~h~-~~v~~~~~~p~~~~l~s  304 (321)
                         .. |.+.   +..+.+.+.|  .+|...-.-+.+.|.|+++.+..+.+       ..|. +.|....|+.++.-.-+
T Consensus       243 sstrp~hnGa---~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v  319 (344)
T KOG4532|consen  243 SSTRPHHNGA---FRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV  319 (344)
T ss_pred             cccCCCCCCc---eEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccc
Confidence               12 2222   2222222222  34554555678999999987644332       2233 34777778777655544


Q ss_pred             Eee
Q 020798          305 GAL  307 (321)
Q Consensus       305 ~~~  307 (321)
                      ..+
T Consensus       320 ~~e  322 (344)
T KOG4532|consen  320 KNE  322 (344)
T ss_pred             ccc
Confidence            443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.99  E-value=1.2e-06  Score=75.13  Aligned_cols=259  Identities=12%  Similarity=0.068  Sum_probs=144.9

Q ss_pred             CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEE-EEECCCCCEEEEEeCCCcEEEEecCCcceeeeeec
Q 020798           35 GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSD-LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIG  113 (321)
Q Consensus        35 g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  113 (321)
                      +..++.++.++.+..+|..+.+...        ..... ..+.+ ...  .+..++.+..++.+..+|..+++.+.....
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W--------~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  188 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAW--------QTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNL  188 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcc--------cccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence            4456667778888877765432211        11111 11111 111  134566678889999999999987655432


Q ss_pred             CcccEE-EEEECC--CCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCC-------CeeEEEEcc--CCCEEEEEeCCCeE
Q 020798          114 HTNYVF-CVNFNP--QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD-------PVTAVDFNR--DGTMIVTSSYDGLC  181 (321)
Q Consensus       114 ~~~~v~-~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i  181 (321)
                      ...... ...-+|  .+..++.+..++.+..+|..+++..-.......       ....+..+|  .+..++.++.+|.+
T Consensus       189 ~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l  268 (394)
T PRK11138        189 DVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL  268 (394)
T ss_pred             CCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE
Confidence            211100 000111  134566677889999999988875543321100       001111122  24567777889999


Q ss_pred             EEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEE
Q 020798          182 RIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIV  261 (321)
Q Consensus       182 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (321)
                      ..+|..+++..-+....  . ...+.  ..+..++.++.++.+..+|..+++.+-.........  ......  .+..++
T Consensus       269 ~ald~~tG~~~W~~~~~--~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~--~~sp~v--~~g~l~  339 (394)
T PRK11138        269 VALDLRSGQIVWKREYG--S-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL--LTAPVL--YNGYLV  339 (394)
T ss_pred             EEEECCCCCEEEeecCC--C-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc--ccCCEE--ECCEEE
Confidence            99999988765432211  1 11111  245577788889999999999988765432111111  111111  245677


Q ss_pred             EeCCCCeEEEEEcccceEEEEecCCCCCeEE-EEecCCCceEEEEeecCCccEEEcc
Q 020798          262 SGSEDSCVYLWELQSRKVVQKLEGHTDPVIS-VASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       262 ~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~-~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      .++.+|.|.+.|..+++.+.+.+-....+.+ -.+ .++ .|..++  .+|.|..++
T Consensus       340 v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t--~~G~l~~~~  392 (394)
T PRK11138        340 VGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQA--RDGTVYAIT  392 (394)
T ss_pred             EEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEe--CCceEEEEe
Confidence            7899999999999999988776544333332 122 234 455555  457777654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.98  E-value=5.8e-06  Score=66.17  Aligned_cols=224  Identities=15%  Similarity=0.201  Sum_probs=140.8

Q ss_pred             EEEEECC-CCCEEEEEeCCCc-EEEEecCCcceeeeeecCcccEE--EEEECCCCCEEEEee-----CCCcEEEEecC-C
Q 020798           77 SDLVFSS-DSRFLVSASDDKT-IRLWDVPTATCLKTLIGHTNYVF--CVNFNPQSNMIVSGA-----FDETVRIWDVK-T  146 (321)
Q Consensus        77 ~~~~~~~-~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~-----~dg~i~~wd~~-~  146 (321)
                      ..++.+| ....++.+-.-|. ..+||..+++....+....+.-+  --.|++||++|++.-     ..|.|-|||.. +
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            4577888 4455666666554 67789988876655433222211  246899999998864     35889999998 5


Q ss_pred             CEEEEEEeCCCCCeeEEEEccCCCEEEEEe------------------CCCeEEEEeCCCCceeeeec---cCCCCCeEE
Q 020798          147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSS------------------YDGLCRIWDASTGHCMKTLI---DDENPPVSF  205 (321)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~~~d~~~~~~~~~~~---~~~~~~~~~  205 (321)
                      -+.+..++.|.-.-..+.+.||++.|+++.                  .+..+.+.|..+++.+.+..   ..+...+..
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            677778888777778899999997776652                  12235556677777665532   224456888


Q ss_pred             EEEccCCCEEEEEecCCe-------EEEEeCCCCcEEEEEeccC-----CceeEEEeEEEecCCeEEEEeC-CCCeEEEE
Q 020798          206 VKFSPNGKFILVGTLDNT-------LRLWNYSTGKILKTYTGHT-----NSKYCISSTFSVTNGKYIVSGS-EDSCVYLW  272 (321)
Q Consensus       206 ~~~~~~g~~l~~~~~d~~-------i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vw  272 (321)
                      +++.++|..++..-..+.       +-+++  .++.+..+....     -..|+-+..+ ..++..+++.+ .-+.+.+|
T Consensus       168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~-~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAA-DRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             EEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEE-eCCCCEEEEECCCCCEEEEE
Confidence            999999987766544332       33333  222222222111     1123333333 35666665444 56789999


Q ss_pred             EcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          273 ELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       273 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      |..+++++....-  ..+..++-.+++ ++++.+
T Consensus       245 d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  245 DAATGRLLGSVPL--PDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             ECCCCCEeecccc--CceeeeeecCCc-eEEeCC
Confidence            9999998765432  346777777776 666654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.97  E-value=9e-09  Score=78.27  Aligned_cols=160  Identities=18%  Similarity=0.211  Sum_probs=100.2

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe-----CCCc
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS-----DDKT   96 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~-----~d~~   96 (321)
                      |.++-.+-+.+--++.+++++.||.+.+++........       .....-..+-.+.++...++++.++.     .-+.
T Consensus        88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~-------~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~  160 (319)
T KOG4714|consen   88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALM-------SRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN  160 (319)
T ss_pred             cCCCCCcccccccCCceEecCCCceEEEEechHHHhhh-------hhcccccccccccceeecccEEecCCcceEeeccc
Confidence            44433333444456789999999999999765421111       11111111122233334455554432     2234


Q ss_pred             EEEEecCCcceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEE-EEEEeCCCCCeeEEEEccC-CCEEE
Q 020798           97 IRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKC-LKVLPAHSDPVTAVDFNRD-GTMIV  173 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~  173 (321)
                      .++|+++..+.+.....-...+.+++-+|.. +.+++|+.||.+-+||.+.... ...+..|+.+++.+-|+|. +..|+
T Consensus       161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf  240 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF  240 (319)
T ss_pred             eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence            5666665443222111122338888888854 5677888999999999987643 3456789999999999995 56899


Q ss_pred             EEeCCCeEEEEeCCC
Q 020798          174 TSSYDGLCRIWDAST  188 (321)
Q Consensus       174 ~~~~dg~i~~~d~~~  188 (321)
                      ++++||.+..||..+
T Consensus       241 t~sedGslw~wdas~  255 (319)
T KOG4714|consen  241 TCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCcEEEEcCCC
Confidence            999999999999874

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=3.4e-09  Score=83.66  Aligned_cols=161  Identities=17%  Similarity=0.290  Sum_probs=119.0

Q ss_pred             EEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCC-----ceeeeeccCCCCCeEE
Q 020798          131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG-----HCMKTLIDDENPPVSF  205 (321)
Q Consensus       131 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~~~~~~~  205 (321)
                      ++.+.+..+-+-++.++.... +. ..+.|.++.|...++++..|..+|.|...|++..     .+...+  .+...+++
T Consensus       228 fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhh
Confidence            555667778888888775332 32 4567888999988899999999999999999854     233333  24556777


Q ss_pred             EEEcc-CCCEEEEEecCCeEEEEeCCCCcE---EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEE
Q 020798          206 VKFSP-NGKFILVGTLDNTLRLWNYSTGKI---LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ  281 (321)
Q Consensus       206 ~~~~~-~g~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  281 (321)
                      +..-. ++++|++.+.+|+|++||.+.-+.   +.++.+|.+....+..... +....+++++.|...|||.++.+.++.
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~-~eeg~I~s~GdDcytRiWsl~~ghLl~  382 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK-EEEGSIFSVGDDCYTRIWSLDSGHLLC  382 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc-cccceEEEccCeeEEEEEecccCceee
Confidence            76666 788999999999999999986655   8999999876544443333 345567779999999999999999887


Q ss_pred             EecCC----CCCeEEEEec
Q 020798          282 KLEGH----TDPVISVASH  296 (321)
Q Consensus       282 ~~~~h----~~~v~~~~~~  296 (321)
                      ++.-.    ...+.+++|.
T Consensus       383 tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  383 TIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ccCCCCccccccccceehh
Confidence            76532    2345667764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.97  E-value=2.5e-08  Score=88.29  Aligned_cols=149  Identities=19%  Similarity=0.332  Sum_probs=116.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC---------CCcEEEEecC
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF---------DETVRIWDVK  145 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~~wd~~  145 (321)
                      +|.-|.  .+++++.+|...|+|.+-|..+.+.++++.+|++.+..+.  -.|+.|++||.         |..|+|||++
T Consensus       179 ~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  179 GVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             ceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhh
Confidence            344444  3678999999999999999999999999999999987654  45899999876         4568899999


Q ss_pred             CCEEEEEEeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEe---CCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC
Q 020798          146 TGKCLKVLPAHSDPVTAVDFNRD-GTMIVTSSYDGLCRIWD---ASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD  221 (321)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d  221 (321)
                      ..+.+..++.+.++ .-+.|+|. ...+++++..|...+-|   +.+......+.....+.+..+.++++|+.++.+..+
T Consensus       255 mmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~  333 (1118)
T KOG1275|consen  255 MMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE  333 (1118)
T ss_pred             hhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence            88777666666555 45678886 45788899999999988   443322233333445558889999999999999999


Q ss_pred             CeEEEEe
Q 020798          222 NTLRLWN  228 (321)
Q Consensus       222 ~~i~i~d  228 (321)
                      |.|.+|.
T Consensus       334 g~v~~wa  340 (1118)
T KOG1275|consen  334 GHVNLWA  340 (1118)
T ss_pred             CcEeeec
Confidence            9999997

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.92  E-value=9.5e-07  Score=70.33  Aligned_cols=190  Identities=21%  Similarity=0.167  Sum_probs=118.3

Q ss_pred             CCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE-eCCC--C-C
Q 020798           84 DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL-PAHS--D-P  159 (321)
Q Consensus        84 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~--~-~  159 (321)
                      ++..+++++.++.+..||..+++.+.............  ...+..++.+..++.++.+|..+++..-.. ....  . .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            55667777899999999999998766554321111111  123556777778889999999999887763 3221  1 1


Q ss_pred             eeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCC---------eEEEEEccCCCEEEEEecCCeEEEEeCC
Q 020798          160 VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPP---------VSFVKFSPNGKFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       160 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~g~~l~~~~~d~~i~i~d~~  230 (321)
                      .........+..++++..++.+..+|+++++.+..........         ...-....++ .++.+..++.+.-+|+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~  191 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA  191 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence            1122233347788888889999999999998765553322111         1111222244 67777777754444999


Q ss_pred             CCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEE
Q 020798          231 TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK  282 (321)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  282 (321)
                      +++.+-...  .....   ... ..++..|+.++.++.|..||+++++.+..
T Consensus       192 tg~~~w~~~--~~~~~---~~~-~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  192 TGEKLWSKP--ISGIY---SLP-SVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TTEEEEEEC--SS-EC---ECE-ECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCCEEEEec--CCCcc---CCc-eeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            998664332  12211   111 23566666666899999999999987653

...

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.91  E-value=4.8e-09  Score=57.54  Aligned_cols=38  Identities=37%  Similarity=0.597  Sum_probs=35.7

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEee
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYS   51 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~   51 (321)
                      ++.+.+++|...|++++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788999999999999999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=6e-08  Score=79.40  Aligned_cols=229  Identities=20%  Similarity=0.237  Sum_probs=155.7

Q ss_pred             CCccccccCCcce-----eeeeccCCcccEEEEEECCCCCEEEEecC-CceEEEeeccccCCCCCCCCCccccccccccc
Q 020798            2 SSDQSLESFRPYT-----LTQTLNGHLRAISSVKFSHDGRLLASSSA-DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQG   75 (321)
Q Consensus         2 ~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~s~~g~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~   75 (321)
                      |-++..+.++|-.     +.+.+..|...|.+++.+-+|..+.+... |..++++|+.......   ...+.-++   +.
T Consensus        27 SlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmin---miKL~~lP---g~  100 (558)
T KOG0882|consen   27 SLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMIN---MIKLVDLP---GF  100 (558)
T ss_pred             ecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhh---hcccccCC---Cc
Confidence            4456667777644     44556788999999999999999999777 9999999987654211   11111111   11


Q ss_pred             EEEEEECCCC--CEEE-EEeCCCcEEEEecCCcce--eeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC----
Q 020798           76 VSDLVFSSDS--RFLV-SASDDKTIRLWDVPTATC--LKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT----  146 (321)
Q Consensus        76 i~~~~~~~~~--~~l~-~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~----  146 (321)
                       .++..++..  ..++ +.-.++.+.++|-....+  ...-.-|..+|.++.++|.+..+++....|.|..|....    
T Consensus       101 -a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf  179 (558)
T KOG0882|consen  101 -AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF  179 (558)
T ss_pred             -eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence             122222221  1233 334678899998654432  233356899999999999999999999999999998652    


Q ss_pred             --CEEE---------EEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc------------------
Q 020798          147 --GKCL---------KVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID------------------  197 (321)
Q Consensus       147 --~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~------------------  197 (321)
                        .+..         ..++.......++.|+|++..+.+-+.|..|++++.++++.++.+-.                  
T Consensus       180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V  259 (558)
T KOG0882|consen  180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV  259 (558)
T ss_pred             ccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence              1111         11222345678999999999999999999999999988765443210                  


Q ss_pred             -------------CCC-CCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          198 -------------DEN-PPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       198 -------------~~~-~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                                   .++ .....+.|+..|++|+.++.-| |++.++.++..++.+
T Consensus       260 elgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  260 ELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             ehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence                         000 1233577888999999887766 899999888777665

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.90  E-value=3.7e-06  Score=72.22  Aligned_cols=239  Identities=8%  Similarity=-0.010  Sum_probs=132.5

Q ss_pred             CCCEEEEecCCceEEEeeccccCCCCCCCCCccc-ccccc-cccEE-EEEECCCCCEEEEEeCCCcEEEEecCCcceeee
Q 020798           34 DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQ-KFTGH-EQGVS-DLVFSSDSRFLVSASDDKTIRLWDVPTATCLKT  110 (321)
Q Consensus        34 ~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~-~~~~h-~~~i~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  110 (321)
                      .+..+.+++.++.+..+|..+.+........... .+... ...+. .+..  .+..++.++.++.+..+|.++++.+..
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            3567777777888888876543221111100000 00000 00000 1111  345677788899999999999887655


Q ss_pred             eecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCee-EEEEcc--CCCEEEEEeCCCeEEEEeCC
Q 020798          111 LIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVT-AVDFNR--DGTMIVTSSYDGLCRIWDAS  187 (321)
Q Consensus       111 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~-~~~~~~--~~~~l~~~~~dg~i~~~d~~  187 (321)
                      ............+  .+..++.+..++.+..+|.++|+.+-..+....... ...-+|  .+..++.++.+|.+..+|..
T Consensus       146 ~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        146 TKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             ccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence            4332221111111  245677778889999999999987765543211000 000011  12356677888999999988


Q ss_pred             CCceeeeeccCCCC---C---eEEEEEcc--CCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeE
Q 020798          188 TGHCMKTLIDDENP---P---VSFVKFSP--NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY  259 (321)
Q Consensus       188 ~~~~~~~~~~~~~~---~---~~~~~~~~--~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (321)
                      +++..-........   .   ...+..+|  .+..+++++.++.+..+|..+++.+-......  ...+  .   ..+..
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~--~---~~~~~  296 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDF--A---VDGGR  296 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCc--E---EECCE
Confidence            88654332111000   0   00011122  24567777889999999999998765543211  1001  1   13456


Q ss_pred             EEEeCCCCeEEEEEcccceEEEEe
Q 020798          260 IVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      ++.++.+|.+..+|..+++.+.+.
T Consensus       297 vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        297 IYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             EEEEcCCCeEEEEECCCCcEEEcc
Confidence            667788999999999998876543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.88  E-value=7.7e-09  Score=56.69  Aligned_cols=39  Identities=36%  Similarity=0.710  Sum_probs=35.2

Q ss_pred             ceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          277 RKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       277 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ++++..+.+|.++|.+++|+|++.+|++|+.  |+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~--D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSS--DGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEET--TSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCC--CCEEEEEC
Confidence            3567889999999999999999999999994  58999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=2.2e-06  Score=76.01  Aligned_cols=201  Identities=15%  Similarity=0.231  Sum_probs=131.0

Q ss_pred             EEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccccccccc-EEEEEECCCCCEEEEEeCCCc-----EEEEec
Q 020798           29 VKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQG-VSDLVFSSDSRFLVSASDDKT-----IRLWDV  102 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~l~~~~~d~~-----i~iwd~  102 (321)
                      -+|++.+..++.|+.+|.|.+++-.         ...++.+..+..+ |..+.......+|++-+.|+.     +++|++
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s---------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l   99 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSS---------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL   99 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEeccc---------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence            4567889999999999999887432         1223455666666 443433334467777766654     899998


Q ss_pred             CCc------cee--eeeec-----CcccEEEEEECCCCCEEEEeeCCCcEEEEecC---C-CEEEEEEeCCCCCeeEEEE
Q 020798          103 PTA------TCL--KTLIG-----HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK---T-GKCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus       103 ~~~------~~~--~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~---~-~~~~~~~~~~~~~v~~~~~  165 (321)
                      +..      .+.  ..+..     ...++.+++++.+-+.+++|-.+|.|..+.-.   . +...........+|+.+++
T Consensus       100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence            543      222  12222     23457889999988889999999999988521   1 1112222334679999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEe
Q 020798          166 NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~  239 (321)
                      ..++..++.+.....|.+|.+....+.......++.+..+..+++....+++++. .-+.+|+....++-..+.
T Consensus       180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            9888764444444568888887433334445566777888888876654655554 459999987666666665

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=8.4e-07  Score=77.93  Aligned_cols=186  Identities=15%  Similarity=0.205  Sum_probs=125.4

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL  153 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  153 (321)
                      ..+++++++  +++|+-|+-+|.|++++.....  .....|+..      ..+|.++++|+.||++.+-.+-+.+....+
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            446666665  5689999999999999875542  334445443      667999999999999999988777766665


Q ss_pred             eCCCCCeeEEEEccC-----CCEEEEEeCCCeEEEEeCCC-CceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 020798          154 PAHSDPVTAVDFNRD-----GTMIVTSSYDGLCRIWDAST-GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW  227 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~  227 (321)
                      .. ..++.+++++|+     .+.+++|+..| +.++.-+- +...........++|.++.|  .|++++-+..+| +++|
T Consensus       110 df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vy  184 (846)
T KOG2066|consen  110 DF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVY  184 (846)
T ss_pred             ec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEE
Confidence            43 468999999998     45789999888 66664321 11111123445677888888  577888777776 9999


Q ss_pred             eCCCCcEEEEEeccCCcee---EEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          228 NYSTGKILKTYTGHTNSKY---CISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      |+.+++.+..++.......   ...-..+ .+...|+.| ..-+|+|..++.
T Consensus       185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W-~~~~~LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  185 DTPTRQRLTNIPPPSQSVRPELFPPHLHW-QDEDRLVIG-WGDSVKICSIKK  234 (846)
T ss_pred             eccccceeeccCCCCCCCCcccCCCceEe-cCCCeEEEe-cCCeEEEEEEec
Confidence            9999888777654332110   0111122 244556655 344688888873

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.83  E-value=9.1e-08  Score=74.85  Aligned_cols=202  Identities=16%  Similarity=0.275  Sum_probs=127.0

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE-E----EEEEeCCC------------CCeeEEEEccCC--CEEEEE
Q 020798          115 TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK-C----LKVLPAHS------------DPVTAVDFNRDG--TMIVTS  175 (321)
Q Consensus       115 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~----~~~~~~~~------------~~v~~~~~~~~~--~~l~~~  175 (321)
                      ...|+++.|...|.++++|...|.|.+|.-.... +    ...++.|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3458889999999999999999999999754322 1    12244443            346778887654  368888


Q ss_pred             eCCCeEEEEeCCCCc--ee--------------------e-------------------e-eccCCCCCeEEEEEccCCC
Q 020798          176 SYDGLCRIWDASTGH--CM--------------------K-------------------T-LIDDENPPVSFVKFSPNGK  213 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~--~~--------------------~-------------------~-~~~~~~~~~~~~~~~~~g~  213 (321)
                      +.|.+|++|.+....  .+                    +                   + ....|...+.++.++.|.+
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            999999999864320  00                    0                   0 0122334466778888877


Q ss_pred             EEEEEecCCeEEEEeCCCCc---EEEEEeccCCc---eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEE------E
Q 020798          214 FILVGTLDNTLRLWNYSTGK---ILKTYTGHTNS---KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV------Q  281 (321)
Q Consensus       214 ~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------~  281 (321)
                      .+++ ..|-.|.+|++.-..   .+..++.|...   ....+.-|.+.....+.-.++.|.|++-|++...+.      .
T Consensus       186 t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            7665 446789999875422   12222222211   001122344444556777788999999999853221      0


Q ss_pred             --E--------ecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          282 --K--------LEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       282 --~--------~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                        .        +.+-...|.++.|+|+|+++++-..   -+|+|||...
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---ltvkiwDvnm  310 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---LTVKIWDVNM  310 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---ceEEEEeccc
Confidence              1        1122356788999999999998653   5899999853

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=2.1e-08  Score=79.33  Aligned_cols=149  Identities=18%  Similarity=0.286  Sum_probs=109.4

Q ss_pred             EEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC-----EEEEEEeCCCCCeeEE
Q 020798           89 VSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG-----KCLKVLPAHSDPVTAV  163 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~  163 (321)
                      ++.+.+-.+-+-|++++.. ..+. .++.|.++.|...++.++.|...|.|..+|++.+     .+...+ -|...|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence            4455566677788877743 2222 5667888889888899999999999999999865     233333 478889888


Q ss_pred             EEcc-CCCEEEEEeCCCeEEEEeCCCCce---eeeeccCCCC-CeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          164 DFNR-DGTMIVTSSYDGLCRIWDASTGHC---MKTLIDDENP-PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       164 ~~~~-~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      ..-. ++.+|.+.+.+|.|++||.+.-++   +.....+.+. ...-+..++....+++++.|...+||.++.+.++.++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            7766 677899999999999999987665   4444332221 1122445667778888999999999999999988877


Q ss_pred             ec
Q 020798          239 TG  240 (321)
Q Consensus       239 ~~  240 (321)
                      +.
T Consensus       385 pf  386 (425)
T KOG2695|consen  385 PF  386 (425)
T ss_pred             CC
Confidence            53

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.81  E-value=3.5e-09  Score=93.39  Aligned_cols=195  Identities=25%  Similarity=0.422  Sum_probs=136.5

Q ss_pred             eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC--eEEEE
Q 020798          107 CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG--LCRIW  184 (321)
Q Consensus       107 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~  184 (321)
                      ..+.+..|+...+|++|+-+.+.|+.|+..|.|+++++.+|.......+|..+++-+.-+.+|..+++.+.-.  ...+|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            3455667888899999999999999999999999999999988888899999999999888998777655433  46789


Q ss_pred             eCCC-CceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE-eccCCceeEEEeEEEecCCeEEEE
Q 020798          185 DAST-GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY-TGHTNSKYCISSTFSVTNGKYIVS  262 (321)
Q Consensus       185 d~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~  262 (321)
                      +... +.....+.     .-.++.|+..-+.-+.|+......+||++++.++.++ .+.....+.-....+.|...+++ 
T Consensus      1173 ~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             ccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            8864 22222221     1235677776555566777678999999998877663 32222222222222334455444 


Q ss_pred             eCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          263 GSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                        .||.  +||++..+-++++..... -..-.|||.|+.++.-+       .|||+.
T Consensus      1247 --ndGv--LWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS-------EIwD~R 1291 (1516)
T KOG1832|consen 1247 --NDGV--LWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS-------EIWDMR 1291 (1516)
T ss_pred             --eCce--eeeeccHHHHhhhhhhee-cccccccCCCceEEeec-------hhhhhH
Confidence              3453  799998877777765542 23457999999988754       267753

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.74  E-value=5.1e-07  Score=80.33  Aligned_cols=181  Identities=16%  Similarity=0.241  Sum_probs=124.9

Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEE
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVD  164 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  164 (321)
                      +..++-|+-...+..+|+.+.+..+...-..+.+.-+..  +++.+++|...|+|.+-|.++.+.+.++..|.+.+.++.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            345666777777888898887765544333334555544  468899999999999999999999999999999887665


Q ss_pred             EccCCCEEEEEeCC---------CeEEEEeCCCCceeeeeccCCCCCeEEEEEccC-CCEEEEEecCCeEEEEeC---CC
Q 020798          165 FNRDGTMIVTSSYD---------GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN-GKFILVGTLDNTLRLWNY---ST  231 (321)
Q Consensus       165 ~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~~~d~~i~i~d~---~~  231 (321)
                        -.|+.|++|+..         ..++|||++.-+.+..+....  ....+.|+|. ...+++++..|+..+.|.   .+
T Consensus       225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~--~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY--GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc--CchhhhhcccccceEEEEecccceeeccccccCC
Confidence              468899998754         457999998755443332222  2345778885 345777888999999983   32


Q ss_pred             CcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEE
Q 020798          232 GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd  273 (321)
                      .. ...+..+.....+..+.+ .++++.+|.|..+|.|.+|.
T Consensus       301 P~-~~~~~v~p~~s~i~~fDi-Ssn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  301 PP-AGVKMVNPNGSGISAFDI-SSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             Cc-cceeEEccCCCcceeEEe-cCCCceEEEecccCcEeeec
Confidence            21 222222222222333333 36899999999999999997

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=2.8e-06  Score=68.96  Aligned_cols=244  Identities=14%  Similarity=0.155  Sum_probs=134.2

Q ss_pred             eeccCCcccEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC-CEEEEEeCC
Q 020798           17 QTLNGHLRAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS-RFLVSASDD   94 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d   94 (321)
                      +.+.+|...|..++|||..+ ++..++.+..|++.|+....        ....+..| ..+.+++|.-+. +++++|-..
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--------~vssy~a~-~~~wSC~wDlde~h~IYaGl~n  257 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--------VVSSYIAY-NQIWSCCWDLDERHVIYAGLQN  257 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccce--------eeeheecc-CCceeeeeccCCcceeEEeccC
Confidence            35678889999999999888 78889999999999986532        23344455 678899998765 577888899


Q ss_pred             CcEEEEecCCcceee-eeec--CcccEEEEEE------CCCCCEEEEeeCCCcEEEEecCCC--EEEEEEe-CCCCCeeE
Q 020798           95 KTIRLWDVPTATCLK-TLIG--HTNYVFCVNF------NPQSNMIVSGAFDETVRIWDVKTG--KCLKVLP-AHSDPVTA  162 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~-~~~~--~~~~v~~~~~------~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~-~~~~~v~~  162 (321)
                      |.|.+||++..+... .+.+  ...+|..++.      .+.+.+++.+..+  +..|++.-.  ......+ ...+.+.+
T Consensus       258 G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cis  335 (463)
T KOG1645|consen  258 GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICIS  335 (463)
T ss_pred             ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceee
Confidence            999999997654211 1111  1223333332      2334555544433  345654321  1111111 22455666


Q ss_pred             EEEccCCCEEEEEe-CCC---eEE----EEeCCCCceeeeeccCC-CC---C---eEEEEEccCCCEEEE-EecCCeEEE
Q 020798          163 VDFNRDGTMIVTSS-YDG---LCR----IWDASTGHCMKTLIDDE-NP---P---VSFVKFSPNGKFILV-GTLDNTLRL  226 (321)
Q Consensus       163 ~~~~~~~~~l~~~~-~dg---~i~----~~d~~~~~~~~~~~~~~-~~---~---~~~~~~~~~g~~l~~-~~~d~~i~i  226 (321)
                      +.+++..+.++... .+.   .++    --|...+..+....... +.   .   -..+.-.++.++++. +...+.+.+
T Consensus       336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil  415 (463)
T KOG1645|consen  336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELIL  415 (463)
T ss_pred             eeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEE
Confidence            77766555444332 211   000    01222222221111000 00   0   011222344455554 445678999


Q ss_pred             EeCCCCcEEEEEeccCCceeEEEeEEEecCC-eEEEEeCCCCeEEEEEcc
Q 020798          227 WNYSTGKILKTYTGHTNSKYCISSTFSVTNG-KYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       227 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~  275 (321)
                      ||..+.+.+..+.-. .+.  ...+....++ .+|++- .|..++||..+
T Consensus       416 ~D~~s~evvQ~l~~~-epv--~Dicp~~~n~~syLa~L-Td~~v~Iyk~e  461 (463)
T KOG1645|consen  416 QDPHSFEVVQTLALS-EPV--LDICPNDTNGSSYLALL-TDDRVHIYKNE  461 (463)
T ss_pred             eccchhheeeecccC-cce--eecceeecCCcchhhhe-ecceEEEEecC
Confidence            999999998888654 222  2333333333 455544 45678887654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=1.4e-05  Score=71.16  Aligned_cols=205  Identities=18%  Similarity=0.318  Sum_probs=126.0

Q ss_pred             EECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCccc-EEEEEECCCCCEEEEeeCCC-----cEEEEecCCC------
Q 020798           80 VFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNY-VFCVNFNPQSNMIVSGAFDE-----TVRIWDVKTG------  147 (321)
Q Consensus        80 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~------  147 (321)
                      +|++.+..++.|+.+|.|.+.+- ..+....++++... +..+-...+.++|++.+.|+     .+++|++..-      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            46778888999999999988873 23333556666655 44343333346777766654     4899998532      


Q ss_pred             EEE---EEE----eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCC---CCceeeeeccCCCCCeEEEEEccCCCEEEE
Q 020798          148 KCL---KVL----PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS---TGHCMKTLIDDENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       148 ~~~---~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  217 (321)
                      .++   ..+    +....++.+++.+.+-..+++|-.+|.|..+.-.   ..............+|+.+++..+++.++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            233   111    1235678899999888888889899999888532   111122333445678999999998887333


Q ss_pred             EecCCeEEEEeCCCCcE-EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec-CCCCC
Q 020798          218 GTLDNTLRLWNYSTGKI-LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE-GHTDP  289 (321)
Q Consensus       218 ~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~  289 (321)
                      ......|.+|.+....+ ...+..+..+..|.  .+....++ +++++ +..|.+|+....+.-..+. +|...
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCs--s~~~~t~q-fIca~-~e~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCS--SFSDGTYQ-FICAG-SEFLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceee--ecCCCCcc-EEEec-CceEEEEcCCCcceeeeecCCCeEE
Confidence            33345799999874442 33344443333332  23333333 44443 3469999987666666666 66543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.63  E-value=9.1e-05  Score=62.90  Aligned_cols=240  Identities=13%  Similarity=0.193  Sum_probs=133.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCccee-------------------------------------------eee
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL-------------------------------------------KTL  111 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------------------------------------------~~~  111 (321)
                      .|..+.|+++...|++|...|.|.+|....++..                                           .-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4788999999888999999999999865322100                                           001


Q ss_pred             ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe--C------CCCCeeEEEEcc-----CC---CEEEEE
Q 020798          112 IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP--A------HSDPVTAVDFNR-----DG---TMIVTS  175 (321)
Q Consensus       112 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~l~~~  175 (321)
                      ....+.|++++.+ +=.+++.|..+|.+.+.|++....+..-.  .      ....++++.|..     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            2235678888886 45689999999999999999887665421  1      234577888762     22   367889


Q ss_pred             eCCCeEEEEeCC--C-Cceeee---eccCCCCCeEE-EEEccC-C-------------------CEEEEEecCCeEEEEe
Q 020798          176 SYDGLCRIWDAS--T-GHCMKT---LIDDENPPVSF-VKFSPN-G-------------------KFILVGTLDNTLRLWN  228 (321)
Q Consensus       176 ~~dg~i~~~d~~--~-~~~~~~---~~~~~~~~~~~-~~~~~~-g-------------------~~l~~~~~d~~i~i~d  228 (321)
                      +..|.+.+|.+.  . +.....   .......++.. ..++.+ |                   +-+++...+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            999999999763  1 111111   11112222222 223211 1                   1244455577899999


Q ss_pred             CCCCcEEEEEeccCCceeEEEeEEE----ecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC----CCeEEEEecCCCc
Q 020798          229 YSTGKILKTYTGHTNSKYCISSTFS----VTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT----DPVISVASHPTEN  300 (321)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~p~~~  300 (321)
                      ..+.+......  .....+....+.    ...+..|++-..+|.|++|.+..-+.+..+.-+.    ..+...+++++|.
T Consensus       242 ~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd  319 (395)
T PF08596_consen  242 PPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD  319 (395)
T ss_dssp             TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred             CCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence            98877665543  222333333332    2346678888999999999999888877665532    2355677788888


Q ss_pred             eEEEEeecCCccEEEcc
Q 020798          301 IIASGALDNDRTVKIWT  317 (321)
Q Consensus       301 ~l~s~~~d~~~~i~iw~  317 (321)
                      .+.-.|..+-..+.+|.
T Consensus       320 i~~~~gpsE~~l~sv~~  336 (395)
T PF08596_consen  320 IFYWTGPSEIQLFSVWG  336 (395)
T ss_dssp             EEEE-SSSEEEEEEEES
T ss_pred             EEEEeCcccEEEEEEEc
Confidence            87766533323344443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.63  E-value=4.1e-05  Score=70.74  Aligned_cols=198  Identities=13%  Similarity=0.215  Sum_probs=125.6

Q ss_pred             ccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec-
Q 020798           24 RAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV-  102 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~-  102 (321)
                      ..|.++.|--+.+.+..+...|.+.+-+....         .+.....-..+|.+++|+||++.++..+..+++.+-+- 
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~---------~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~  139 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETL---------ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD  139 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccc---------ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc
Confidence            57888999889988888888999988754431         12222334688999999999999988888777765321 


Q ss_pred             ---CC-----------c--------ceeeeeecC---------------------cccEEEEEECCCCCEEEEe-----e
Q 020798          103 ---PT-----------A--------TCLKTLIGH---------------------TNYVFCVNFNPQSNMIVSG-----A  134 (321)
Q Consensus       103 ---~~-----------~--------~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~-----~  134 (321)
                         -.           .        +....+.+.                     .+.=..+.|-.||.++++.     .
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET  219 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence               00           0        000011110                     0111348899999998873     2


Q ss_pred             CCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEe---CCCeEEEEeCCC---CceeeeeccCCCCCeEEEEE
Q 020798          135 FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS---YDGLCRIWDAST---GHCMKTLIDDENPPVSFVKF  208 (321)
Q Consensus       135 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~  208 (321)
                      ....|++||-+ +.+...-......-.+++|-|.|..+++-.   .++.|.+|.-+.   +....... .....+..++|
T Consensus       220 ~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~W  297 (1265)
T KOG1920|consen  220 GTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAW  297 (1265)
T ss_pred             CceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeee
Confidence            23789999965 443322222223346799999999888753   456788886432   11111111 11223788999


Q ss_pred             ccCCCEEEE---EecCCeEEEEeCCCC
Q 020798          209 SPNGKFILV---GTLDNTLRLWNYSTG  232 (321)
Q Consensus       209 ~~~g~~l~~---~~~d~~i~i~d~~~~  232 (321)
                      +.++..|++   ......|++|-+.+-
T Consensus       298 ns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  298 NSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cCCCCceeeeecccccceEEEEEecCe
Confidence            999999887   344456999987653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.61  E-value=3.4e-05  Score=71.29  Aligned_cols=234  Identities=15%  Similarity=0.196  Sum_probs=132.7

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL  153 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  153 (321)
                      ..|.++.|..+...++.+..+|.|.+-|..+... .....-...|.+++|+||...++..+..+++.+-+ .+-.++...
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~  146 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK  146 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence            5799999999999999999999999998877643 22333456799999999999998888777776543 222222221


Q ss_pred             eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCcee-------eeecc--CCCCCeEEEEEccCCCEEEEEe----c
Q 020798          154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM-------KTLID--DENPPVSFVKFSPNGKFILVGT----L  220 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------~~~~~--~~~~~~~~~~~~~~g~~l~~~~----~  220 (321)
                      +.+.      .-.+.+ .++.+++...=.-+....++..       .....  .....-..+.|--||+++++..    .
T Consensus       147 ~L~~------d~~~~s-k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  147 PLDA------DDERKS-KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET  219 (1265)
T ss_pred             cccc------cccccc-ccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence            1111      111111 2233333221111111111100       00000  0111224588999999998843    2


Q ss_pred             C-CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEe---CCCCeEEEEEcccc---eEEEEecCCCCCeEEE
Q 020798          221 D-NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG---SEDSCVYLWELQSR---KVVQKLEGHTDPVISV  293 (321)
Q Consensus       221 d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~  293 (321)
                      + ..|+|||.. +.+-..-....+...+   ..+.|.|..+++-   ++|+.|.+|+-+.-   ...-.......++..+
T Consensus       220 ~~RkirV~drE-g~Lns~se~~~~l~~~---LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L  295 (1265)
T KOG1920|consen  220 GTRKIRVYDRE-GALNSTSEPVEGLQHS---LSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL  295 (1265)
T ss_pred             CceeEEEeccc-chhhcccCcccccccc---eeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence            3 789999965 4322211111111112   2334678777764   45667999985321   1111222233458999


Q ss_pred             EecCCCceEEEEeec-CCccEEEccccc
Q 020798          294 ASHPTENIIASGALD-NDRTVKIWTQEK  320 (321)
Q Consensus       294 ~~~p~~~~l~s~~~d-~~~~i~iw~~~~  320 (321)
                      +|+.++..||.--.. ....|++|...+
T Consensus       296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  296 AWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             eecCCCCceeeeecccccceEEEEEecC
Confidence            999999999983222 334599998753

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.55  E-value=5.2e-05  Score=64.08  Aligned_cols=264  Identities=20%  Similarity=0.251  Sum_probs=131.7

Q ss_pred             CCCCCEEEEecC---------CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           32 SHDGRLLASSSA---------DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        32 s~~g~~l~~~~~---------d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      |||+++++...+         .+.+.+||+....         ...+......+....|+|+|+.++... ++.|.+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---------~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~   70 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---------ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDL   70 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---------EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---------eEECcCCccccccceeecCCCeeEEEe-cCceEEEEC
Confidence            688888776432         3456667665421         112222245678899999999988765 578999988


Q ss_pred             CCcceeee-eec-------Cc---------ccEEEEEECCCCCEEEEeeCC-CcEEEE----------------------
Q 020798          103 PTATCLKT-LIG-------HT---------NYVFCVNFNPQSNMIVSGAFD-ETVRIW----------------------  142 (321)
Q Consensus       103 ~~~~~~~~-~~~-------~~---------~~v~~~~~~~~~~~l~~~~~d-g~i~~w----------------------  142 (321)
                      .++..... ..+       -.         +.-..+-|+||+++|+....| ..++.+                      
T Consensus        71 ~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk  150 (353)
T PF00930_consen   71 ATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK  150 (353)
T ss_dssp             TTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred             CCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCC
Confidence            76643221 111       00         112457799999988765432 223222                      


Q ss_pred             -------------ecCCCEEEE-EE----eCCCCCeeEEEEccCCCEEEEE--eCCC---eEEEEeCCCCceeeeeccCC
Q 020798          143 -------------DVKTGKCLK-VL----PAHSDPVTAVDFNRDGTMIVTS--SYDG---LCRIWDASTGHCMKTLIDDE  199 (321)
Q Consensus       143 -------------d~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~l~~~--~~dg---~i~~~d~~~~~~~~~~~~~~  199 (321)
                                   |+.+++... ..    ......+..+.|.+++..++..  ..+.   .+.++|..++.+........
T Consensus       151 ~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~  230 (353)
T PF00930_consen  151 AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS  230 (353)
T ss_dssp             TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES
T ss_pred             CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC
Confidence                         222221100 00    0112235678888888733332  3322   45666776654432221111


Q ss_pred             CC---CeEEEEEc-cCCC-EEEEEecCC--eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC----Ce
Q 020798          200 NP---PVSFVKFS-PNGK-FILVGTLDN--TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED----SC  268 (321)
Q Consensus       200 ~~---~~~~~~~~-~~g~-~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~  268 (321)
                      ..   ......+. +++. ++.....+|  .|.+++...+. ...+....-.+..+ ..+...++....++..+    ..
T Consensus       231 ~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i-~~~d~~~~~iyf~a~~~~p~~r~  308 (353)
T PF00930_consen  231 DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSI-LGWDEDNNRIYFTANGDNPGERH  308 (353)
T ss_dssp             SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEE-EEEECTSSEEEEEESSGGTTSBE
T ss_pred             CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeeccc-ceEcCCCCEEEEEecCCCCCceE
Confidence            11   11234443 5554 444555666  45666665554 33333222222121 22333345555566653    35


Q ss_pred             EEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEee
Q 020798          269 VYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGAL  307 (321)
Q Consensus       269 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  307 (321)
                      |..-++..+..+..+......-..+.|+|++++++-...
T Consensus       309 lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  309 LYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             EEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            666666623444555543333369999999999887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.52  E-value=0.00019  Score=62.77  Aligned_cols=138  Identities=10%  Similarity=0.076  Sum_probs=95.0

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      |...|.--+++-.+++++.|+.-|.+.+|.......       .+....+-.+.+..+..+++..++|+|+..|.|.++-
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~q  104 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQ  104 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhh-------hcccccCccceEEEEEecchhHhhhhhcCCceEEeeh
Confidence            344555556677899999999999999996543221       1122222445667788899999999999999999997


Q ss_pred             cCCccee-----ee-eecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE----EEEEEeCCCCCeeEEEEc
Q 020798          102 VPTATCL-----KT-LIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK----CLKVLPAHSDPVTAVDFN  166 (321)
Q Consensus       102 ~~~~~~~-----~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~~  166 (321)
                      +......     .. -..|...|++++|++++..+++|...|+|..-.+....    ..+.+-.....|-.+++.
T Consensus       105 l~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  105 LNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             hhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            7553211     11 13478899999999999999999999999888776511    112222334566666654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.50  E-value=3.4e-06  Score=72.02  Aligned_cols=114  Identities=20%  Similarity=0.288  Sum_probs=79.3

Q ss_pred             EEEEEECCC-CCEEEEE----eCCCc----EEEEecCCcceee---eeecCcccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 020798           76 VSDLVFSSD-SRFLVSA----SDDKT----IRLWDVPTATCLK---TLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD  143 (321)
Q Consensus        76 i~~~~~~~~-~~~l~~~----~~d~~----i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  143 (321)
                      ..++.|+.. .+.+.+.    +.+|.    -.+|++..++...   .-......+.+++++|+...++.|+.||.|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            345566653 3334332    33443    3456655443211   1234667899999999999999999999999999


Q ss_pred             cCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q 020798          144 VKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC  191 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  191 (321)
                      ...+...  .....-..+.++|+|+|..+++|+..|.+.+||..-...
T Consensus       288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            8766432  223345568899999999999999999999999865443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=1e-05  Score=71.34  Aligned_cols=180  Identities=17%  Similarity=0.232  Sum_probs=120.4

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee
Q 020798          116 NYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL  195 (321)
Q Consensus       116 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  195 (321)
                      ..+.|++++  +.+|+-|..+|.+++++.... . .....|...      .-+|.++++|+.||.+.+..+-+.+.....
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            445666665  578999999999999986533 3 333344433      557999999999999999887766554433


Q ss_pred             ccCCCCCeEEEEEccC-----CCEEEEEecCCeEEEEeCC---CCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC
Q 020798          196 IDDENPPVSFVKFSPN-----GKFILVGTLDNTLRLWNYS---TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS  267 (321)
Q Consensus       196 ~~~~~~~~~~~~~~~~-----g~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  267 (321)
                        ....++..++++|+     .+.+++|+..| +.++.-+   ....+ ......+++.++.+     .|.++|-++.+|
T Consensus       110 --df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W-----~g~lIAWand~G  180 (846)
T KOG2066|consen  110 --DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW-----RGNLIAWANDDG  180 (846)
T ss_pred             --ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe-----cCcEEEEecCCC
Confidence              23557889999997     46688888888 7776522   11112 23333455554432     488898888777


Q ss_pred             eEEEEEcccceEEEEecCCCCCe------EEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          268 CVYLWELQSRKVVQKLEGHTDPV------ISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       268 ~i~vwd~~~~~~~~~~~~h~~~v------~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                       |+|||..+++.+..++-....+      ..+.|.++ ..|+-|..|   +|+|...+
T Consensus       181 -v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d---~v~i~~I~  233 (846)
T KOG2066|consen  181 -VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD---SVKICSIK  233 (846)
T ss_pred             -cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC---eEEEEEEe
Confidence             8999999988877765543433      35677654 556666543   57776654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.43  E-value=0.00018  Score=61.14  Aligned_cols=215  Identities=15%  Similarity=0.230  Sum_probs=120.1

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCCC---CCCC--------------------------------Cccccc
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSD---STPP--------------------------------SPLQKF   69 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~---~~~~--------------------------------~~~~~~   69 (321)
                      .|+.+.|+++...|++|...|.|.+|.........   ..+.                                .|...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999999999999999999998765432221   0000                                011112


Q ss_pred             ccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeee--ec------CcccEEEEEEC-----CCC---CEEEEe
Q 020798           70 TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTL--IG------HTNYVFCVNFN-----PQS---NMIVSG  133 (321)
Q Consensus        70 ~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~------~~~~v~~~~~~-----~~~---~~l~~~  133 (321)
                      ....+.|++++.|.-| +++.|..+|.+.|.|++....+..-  ..      ....+.++.|.     .|+   -.+++|
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            2345789999998554 8999999999999999887765431  11      23456677664     233   357888


Q ss_pred             eCCCcEEEEecCC---CEE----EEEEeCCCCCeeEEE-EccC-----------------C---CEEEEEeCCCeEEEEe
Q 020798          134 AFDETVRIWDVKT---GKC----LKVLPAHSDPVTAVD-FNRD-----------------G---TMIVTSSYDGLCRIWD  185 (321)
Q Consensus       134 ~~dg~i~~wd~~~---~~~----~~~~~~~~~~v~~~~-~~~~-----------------~---~~l~~~~~dg~i~~~d  185 (321)
                      ...|.+.+|.+..   +.-    ......+.+++..+. ++.+                 +   ..++....+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999997642   111    111123455555444 2111                 1   1244445567799999


Q ss_pred             CCCCceeeeeccCCCCCeEEEEE-----ccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc
Q 020798          186 ASTGHCMKTLIDDENPPVSFVKF-----SPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH  241 (321)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  241 (321)
                      ..+.+...+.. ........+.+     ...+..|++-..+|.+++|.+..-+.+......
T Consensus       242 ~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~  301 (395)
T PF08596_consen  242 PPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP  301 (395)
T ss_dssp             TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred             CCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence            88777665554 22122223333     235667788889999999999998888777653

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=0.00084  Score=57.32  Aligned_cols=218  Identities=17%  Similarity=0.230  Sum_probs=144.2

Q ss_pred             EEEEEECCCCCEE-EEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC---CCcEEEEecCCCEEEE
Q 020798           76 VSDLVFSSDSRFL-VSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF---DETVRIWDVKTGKCLK  151 (321)
Q Consensus        76 i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~  151 (321)
                      -..++.++.++.+ +....++.|.+.|..+.+....... ......++++|+++.+..+..   ++.+.+.|..+.+...
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            4567888888744 4555568999999877776554432 225568899999987766554   6889999988888877


Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEeCCCCceee-ee--ccCCCCCeEEEEEccCCCEEEEEecC---CeE
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTSS-YDGLCRIWDASTGHCMK-TL--IDDENPPVSFVKFSPNGKFILVGTLD---NTL  224 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~-~~--~~~~~~~~~~~~~~~~g~~l~~~~~d---~~i  224 (321)
                      ..+....+ ..+++.|++..++.+. .++.+.+.|........ ..  ..........+.++|+|+.+.+....   +.+
T Consensus       155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence            76654455 8899999999666555 78899999977654442 10  01122334568899999977665543   589


Q ss_pred             EEEeCCCCcEEEE-EeccCCceeEEEeEEEecCCeEEEEe-CCCCeEEEEEcccceEEEEecCCC---CCeEEEEecCC
Q 020798          225 RLWNYSTGKILKT-YTGHTNSKYCISSTFSVTNGKYIVSG-SEDSCVYLWELQSRKVVQKLEGHT---DPVISVASHPT  298 (321)
Q Consensus       225 ~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~p~  298 (321)
                      ...|..++..... +.......  . .....++|..+... +..+.+.+.|..+...........   ..+..+++.+.
T Consensus       234 ~~id~~~~~v~~~~~~~~~~~~--~-~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         234 LKIDTATGNVTATDLPVGSGAP--R-GVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             EEEeCCCceEEEeccccccCCC--C-ceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            9999888776665 22221111  1 12234678777766 445889999988877766544332   23455555544

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.41  E-value=1.1e-07  Score=81.36  Aligned_cols=200  Identities=16%  Similarity=0.273  Sum_probs=124.0

Q ss_pred             cccEEEEEECCCCC--EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC-CCCEEEEEe----CCC
Q 020798           23 LRAISSVKFSHDGR--LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS-DSRFLVSAS----DDK   95 (321)
Q Consensus        23 ~~~v~~~~~s~~g~--~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~~~~----~d~   95 (321)
                      ...+.|++++.+.+  +++.|..+|.|.+-.+......      .-...++|....++++|++ |.+.||+|-    .|.
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds  129 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS  129 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence            34677888776544  7899999999988765432211      1223356778899999998 456777663    456


Q ss_pred             cEEEEecCCc--ceee--eeec-CcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEcc-CC
Q 020798           96 TIRLWDVPTA--TCLK--TLIG-HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR-DG  169 (321)
Q Consensus        96 ~i~iwd~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~  169 (321)
                      .+.|||+.+.  .+..  .+.+ ......+++|-.+.+.+++|.....++++|++... ..........+..+...| .+
T Consensus       130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSP  208 (783)
T ss_pred             CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCC
Confidence            7999999776  2111  1222 33345578888777888899888899999987321 111111233455567777 55


Q ss_pred             CEEEEEeCCCeEEEEe-CCCCcee-eeeccCC---CCCeEEEEEccCC--CEEEEEecCCeEEEEeCC
Q 020798          170 TMIVTSSYDGLCRIWD-ASTGHCM-KTLIDDE---NPPVSFVKFSPNG--KFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d-~~~~~~~-~~~~~~~---~~~~~~~~~~~~g--~~l~~~~~d~~i~i~d~~  230 (321)
                      +++++ ..||.+.+|| .++-+.. ..+....   ...+..++|+|..  ...+..-..++|++||+.
T Consensus       209 nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  209 NYFCS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             Cceec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            56554 4599999999 4433222 2221111   1236788999953  333333445789999975

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.40  E-value=3.3e-06  Score=74.90  Aligned_cols=108  Identities=15%  Similarity=0.283  Sum_probs=85.1

Q ss_pred             EEEECCCCCEEEEEe----CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE
Q 020798           78 DLVFSSDSRFLVSAS----DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL  153 (321)
Q Consensus        78 ~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  153 (321)
                      -..|+|...+++.++    ..|+|.||- +++++..... ..-.+.+++|+|..-.|+.+-.-|.+.+|...+.+.....
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~   97 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV   97 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence            357999999888775    457888883 4555433221 1223557999998888899989999999998877766666


Q ss_pred             eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCC
Q 020798          154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS  187 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  187 (321)
                      ..|..++..+.|+++|+.+.++..-|.+.+|...
T Consensus        98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            7899999999999999999999999999999765

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.40  E-value=0.00056  Score=54.09  Aligned_cols=201  Identities=16%  Similarity=0.301  Sum_probs=110.0

Q ss_pred             eeeccCCcccEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccccccc-cccEEEEEECCCCCEEEEEeC
Q 020798           16 TQTLNGHLRAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH-EQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        16 ~~~~~~h~~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      .+.+.+-...++.++|+|+.+ ++++....+.|..+++..         ..++.+.-. .+..-.|++..++.++++.-.
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G---------~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er   84 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG---------KVLRRIPLDGFGDYEGITYLGNGRYVLSEER   84 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------EEEEEE-SS-SSEEEEEE-STTEEEEEETT
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC---------CEEEEEeCCCCCCceeEEEECCCEEEEEEcC
Confidence            356778788899999999755 667777778877776532         122222211 345778899888887777666


Q ss_pred             CCcEEEEecCCcce------eeee-----ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC---CEEEEEE------
Q 020798           94 DKTIRLWDVPTATC------LKTL-----IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT---GKCLKVL------  153 (321)
Q Consensus        94 d~~i~iwd~~~~~~------~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~------  153 (321)
                      ++.+.++++.....      ...+     ..++..+-.++|+|.++.|+.+-...-..+|.++.   .......      
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~  164 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD  164 (248)
T ss_dssp             TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred             CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence            88999988843210      1111     12445588999999988887777666666666543   1111111      


Q ss_pred             --eCCCCCeeEEEEccCC-CEEEEEeCCCeEEEEeCCCCceeeeeccC--------CCCCeEEEEEccCCCEEEEEecCC
Q 020798          154 --PAHSDPVTAVDFNRDG-TMIVTSSYDGLCRIWDASTGHCMKTLIDD--------ENPPVSFVKFSPNGKFILVGTLDN  222 (321)
Q Consensus       154 --~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~l~~~~~d~  222 (321)
                        ......+.+++++|.. ++++.......+..+| ..++....+.-.        .-+....+++.++|++.++ +.-+
T Consensus       165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpN  242 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPN  242 (248)
T ss_dssp             -HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTT
T ss_pred             cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCc
Confidence              1123456889999865 4666677788888888 445544333211        1234678999999976554 4555


Q ss_pred             eEEEE
Q 020798          223 TLRLW  227 (321)
Q Consensus       223 ~i~i~  227 (321)
                      ...+|
T Consensus       243 lfy~f  247 (248)
T PF06977_consen  243 LFYRF  247 (248)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            55444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.38  E-value=0.00076  Score=55.03  Aligned_cols=249  Identities=15%  Similarity=0.210  Sum_probs=135.2

Q ss_pred             EEECCCCCEEEEecC----------CceEEEeeccccCCCC--CCCCCcccccccccccEEEEEECCCCCEEEEE--eCC
Q 020798           29 VKFSHDGRLLASSSA----------DKTLLTYSLSSISNSD--STPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA--SDD   94 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~----------d~~v~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~--~~d   94 (321)
                      +..+|+++.+++++.          .-.|.+||..+.....  ..|..+....   -.....+.++.++++++..  +-.
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~---~~~~~~~~ls~dgk~~~V~N~TPa  117 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV---VPYKNMFALSADGKFLYVQNFTPA  117 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B---S--GGGEEE-TTSSEEEEEEESSS
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee---cccccceEEccCCcEEEEEccCCC
Confidence            567999998886432          3467788876542111  0111111100   0122346788999988765  344


Q ss_pred             CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC-CCEEEEE----EeCCCCCee-EEEEccC
Q 020798           95 KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK-TGKCLKV----LPAHSDPVT-AVDFNRD  168 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~----~~~~~~~v~-~~~~~~~  168 (321)
                      .+|.|-|+...+.+..+.-..  +..+--.+ ++.|.+-+.||.+.-..+. .|+....    +....+++. .-++...
T Consensus       118 ~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  118 TSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             CeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            578999998888776654222  22221122 2457777888998888776 3443321    111222332 3345555


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce--eeeec--cC----C---CCCeEEEEEccCCCEEEEEec---CC-------eEEEE
Q 020798          169 GTMIVTSSYDGLCRIWDASTGHC--MKTLI--DD----E---NPPVSFVKFSPNGKFILVGTL---DN-------TLRLW  227 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~~~~--~~~~~--~~----~---~~~~~~~~~~~~g~~l~~~~~---d~-------~i~i~  227 (321)
                      +..++..+.+|.|+-.|+.....  ...+.  ..    .   ...-..+++++..+.|++--.   ++       .|.+|
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            66777789999999888865432  11111  00    0   012334778876555544321   11       48889


Q ss_pred             eCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEE-eCCCCeEEEEEcccceEEEEecCC
Q 020798          228 NYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVS-GSEDSCVYLWELQSRKVVQKLEGH  286 (321)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~h  286 (321)
                      |+.+++.+..+.... ....+.  ....+..+|++ ...++.|.+||..+++.+.+++.-
T Consensus       275 D~~t~krv~Ri~l~~-~~~Si~--Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  275 DLKTHKRVARIPLEH-PIDSIA--VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             ETTTTEEEEEEEEEE-EESEEE--EESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             ECCCCeEEEEEeCCC-ccceEE--EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            999999998886422 222232  22334445654 456899999999999999888753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.37  E-value=0.00018  Score=63.36  Aligned_cols=213  Identities=14%  Similarity=0.114  Sum_probs=120.9

Q ss_pred             EECCCCCEEEE-EeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCC----cEEEEecCCCEEEEEEe
Q 020798           80 VFSSDSRFLVS-ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE----TVRIWDVKTGKCLKVLP  154 (321)
Q Consensus        80 ~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~  154 (321)
                      -++|||+.+.. .-..+.+.+.|.++.+...++.- ......++++|+++++++.+.+.    ++...+.........+.
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            34556654432 22234566677776655444432 22345678899999887775322    22222221111111110


Q ss_pred             CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCC-----CceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEe
Q 020798          155 AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST-----GHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWN  228 (321)
Q Consensus       155 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d  228 (321)
                        ...+  -++.++|+....  .++.|.+.|.++     ......+..  ......+.++|||+++++++ .++++.|+|
T Consensus       278 --i~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSVID  349 (635)
T PRK02888        278 --IARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTVID  349 (635)
T ss_pred             --hHHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence              0000  123456765554  367899999987     333444432  33456789999999988765 588999999


Q ss_pred             CCCCcE------------EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc----------ceEEEEecCC
Q 020798          229 YSTGKI------------LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS----------RKVVQKLEGH  286 (321)
Q Consensus       229 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~h  286 (321)
                      +.+.+.            +....--.++   +-..| ..+|....+-..|..|..|++..          ...+.++.-|
T Consensus       350 v~k~k~~~~~~~~~~~~vvaevevGlGP---LHTaF-Dg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~  425 (635)
T PRK02888        350 VRKLDDLFDGKIKPRDAVVAEPELGLGP---LHTAF-DGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVH  425 (635)
T ss_pred             ChhhhhhhhccCCccceEEEeeccCCCc---ceEEE-CCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCC
Confidence            987542            2333221222   22233 35677777778899999999876          3455666555


Q ss_pred             CCCeE-----EEEecCCCceEEEE
Q 020798          287 TDPVI-----SVASHPTENIIASG  305 (321)
Q Consensus       287 ~~~v~-----~~~~~p~~~~l~s~  305 (321)
                      -++-.     +=.-.|+|++|++.
T Consensus       426 y~pgh~~~~~g~t~~~dgk~l~~~  449 (635)
T PRK02888        426 YQPGHNHASMGETKEADGKWLVSL  449 (635)
T ss_pred             CccceeeecCCCcCCCCCCEEEEc
Confidence            44322     22347888888876

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.37  E-value=0.00066  Score=53.68  Aligned_cols=193  Identities=14%  Similarity=0.204  Sum_probs=109.8

Q ss_pred             eecCcccEEEEEECCCCCE-EEEeeCCCcEEEEecCCCEEEEEEeCCC-CCeeEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 020798          111 LIGHTNYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGKCLKVLPAHS-DPVTAVDFNRDGTMIVTSSYDGLCRIWDAST  188 (321)
Q Consensus       111 ~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  188 (321)
                      +.+-...+..++|+|+.+. +++....+.|..++. +|+.+..++... .....+++..++.++++.-.++.+.++++..
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            3444556899999998664 566677888888886 477777776443 5578899987777666666689999888732


Q ss_pred             Cc------eeeee----ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCC---CcEEEEE--eccC---CceeEEE-
Q 020798          189 GH------CMKTL----IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST---GKILKTY--TGHT---NSKYCIS-  249 (321)
Q Consensus       189 ~~------~~~~~----~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~---~~~~~~~--~~~~---~~~~~~~-  249 (321)
                      ..      ....+    ....+..+..++|+|.++.|+++.......+|.+..   ...+...  ....   ....-++ 
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~  175 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG  175 (248)
T ss_dssp             --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred             cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence            11      11111    112445688999999988888888777777776543   2222111  1111   0011122 


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC---------CCeEEEEecCCCceEEEE
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT---------DPVISVASHPTENIIASG  305 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~---------~~v~~~~~~p~~~~l~s~  305 (321)
                      ..+.+..+.+++-......|..+| .+++.+..+.-..         ..--.+++.++|++.++.
T Consensus       176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            234556788888888899999999 5566655443211         235789999999888874

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.32  E-value=0.00065  Score=57.50  Aligned_cols=233  Identities=19%  Similarity=0.235  Sum_probs=120.9

Q ss_pred             CCCCCEEEEEe---------CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE
Q 020798           82 SSDSRFLVSAS---------DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV  152 (321)
Q Consensus        82 ~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  152 (321)
                      |||+++++...         ..+.+.+||+.+++... +......+....|+|+|+.++... ++.|++++..++...+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            57777776532         23568899999876433 222245677889999999988765 57899999877754432


Q ss_pred             EeCC-----------------CCCeeEEEEccCCCEEEEEeCC-CeE---------------------------------
Q 020798          153 LPAH-----------------SDPVTAVDFNRDGTMIVTSSYD-GLC---------------------------------  181 (321)
Q Consensus       153 ~~~~-----------------~~~v~~~~~~~~~~~l~~~~~d-g~i---------------------------------  181 (321)
                      -...                 -+.-..+.|+||++.|+....| ..+                                 
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            1111                 1123578899999988776322 222                                 


Q ss_pred             --EEEeCCCCceeeee-c---cCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEeCCCCcEEEEEeccCC-ce-eEE
Q 020798          182 --RIWDASTGHCMKTL-I---DDENPPVSFVKFSPNGKFILVGTLD-----NTLRLWNYSTGKILKTYTGHTN-SK-YCI  248 (321)
Q Consensus       182 --~~~d~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~-~~-~~~  248 (321)
                        .++|+.+++..... .   ......+..+.|.++++.|+..-.+     ..+.++|..++........... -. ..-
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence              22333322211000 0   1122335678888888844443322     2467778776654332222111 00 000


Q ss_pred             EeEEE-ecCCeEEEEeCCCCe--EEEEEcccceEEEEecCCCCCeEE-EEecCCCceEE-EEeecCCccEEEcc
Q 020798          249 SSTFS-VTNGKYIVSGSEDSC--VYLWELQSRKVVQKLEGHTDPVIS-VASHPTENIIA-SGALDNDRTVKIWT  317 (321)
Q Consensus       249 ~~~~~-~~~~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~h~~~v~~-~~~~p~~~~l~-s~~~d~~~~i~iw~  317 (321)
                      ...+. ..+..++.....+|.  |.+++...+. ...+....-.|.. +.++++++.|. ++..++...-.||.
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~  311 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR  311 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence            11222 344556665567775  4555555444 3455545556755 56777765443 44433333444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.30  E-value=0.00061  Score=58.79  Aligned_cols=219  Identities=16%  Similarity=0.182  Sum_probs=103.3

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      ..-....+.++|+|+.+++++ ||.-.+|.-..           .+  ....+.-....|.+.++ +|+-...++|.|+.
T Consensus        31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~-----------~r--~k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALA-----------WR--NKAFGSGLSFVWSSRNR-YAVLESSSTIKIYK   95 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTT-----------TE--EEEEEE-SEEEE-TSSE-EEEE-TTS-EEEEE
T ss_pred             CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccC-----------Cc--ccccCceeEEEEecCcc-EEEEECCCeEEEEE
Confidence            444578899999999999966 66666764110           01  11234445678888655 55566688899963


Q ss_pred             cCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeE
Q 020798          102 VPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLC  181 (321)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  181 (321)
                      --+.+..+.+... ..+..+-.   |..|+..+. +.|.+||+.+++.+..+...  +|..+.|++++++++..+.+ .+
T Consensus        96 n~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i  167 (443)
T PF04053_consen   96 NFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SI  167 (443)
T ss_dssp             TTEE-TT-----S-S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SE
T ss_pred             cCccccceEEcCC-cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eE
Confidence            2222222222211 12223322   777766654 48999999999999888643  48999999999999888866 45


Q ss_pred             EEEeCCCC----------c-eeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc--EEEEEeccCCceeEE
Q 020798          182 RIWDASTG----------H-CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK--ILKTYTGHTNSKYCI  248 (321)
Q Consensus       182 ~~~d~~~~----------~-~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~  248 (321)
                      .+++....          + .... .......|.+..|..+  .++-.+.. .|+.+  ..|+  .+..+   ..+.+.+
T Consensus       168 ~il~~~~~~~~~~~~~g~e~~f~~-~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~l---d~~~yll  238 (443)
T PF04053_consen  168 YILKYNLEAVAAIPEEGVEDAFEL-IHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHL---DKPLYLL  238 (443)
T ss_dssp             EEEEE-HHHHHHBTTTB-GGGEEE-EEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE----SS--EEE
T ss_pred             EEEEecchhcccccccCchhceEE-EEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEc---CCceEEE
Confidence            66654322          0 1111 1111334566667655  33333333 66653  2232  22222   2223322


Q ss_pred             EeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          249 SSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      ..   .+....+.....|+.|..+.+.
T Consensus       239 gy---~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  239 GY---LPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EE---ETTTTEEEEE-TT--EEEEE--
T ss_pred             EE---EccCCEEEEEECCCCEEEEEEC
Confidence            21   1233455556667777666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=0.00021  Score=64.07  Aligned_cols=108  Identities=10%  Similarity=0.173  Sum_probs=80.2

Q ss_pred             EEEECCCCCEEEEec----CCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 020798           28 SVKFSHDGRLLASSS----ADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP  103 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~----~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  103 (321)
                      -..|+|...++|+++    ..|.+.||--.+.      |.. --+++-|   +.+++|+|..-.|+.|-.-|.+.+|...
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGE------Pqr-~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~   89 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGE------PQR-DVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTN   89 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEecCCC------CCc-cccccee---hhhhccChHHHHHhhccccceeEEEecC
Confidence            357888888888764    3578888743221      111 1112222   4569999998888889889999999987


Q ss_pred             CcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC
Q 020798          104 TATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK  145 (321)
Q Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  145 (321)
                      +.+.......|..++..+.|+|+|+.++++..-|.+.+|...
T Consensus        90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            766544456799999999999999999999999999999753

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.26  E-value=0.0028  Score=56.14  Aligned_cols=223  Identities=17%  Similarity=0.213  Sum_probs=123.7

Q ss_pred             CEEEEEeCCCcEEEEecCCcceeeeeecCccc--EEEEEECC--CCCEEEEee---------CCCcEEEEecCCCEEEEE
Q 020798           86 RFLVSASDDKTIRLWDVPTATCLKTLIGHTNY--VFCVNFNP--QSNMIVSGA---------FDETVRIWDVKTGKCLKV  152 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~---------~dg~i~~wd~~~~~~~~~  152 (321)
                      ..++.++.++.|.-+|.++++.+-........  -..+.-+|  .+..++.++         .++.+..+|..+++.+-.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            56777888999999999999876554322210  00111111  124444443         367889999999987665


Q ss_pred             EeCCCC--------------------Ce-eEEEEccCCCEEEEEeCCC------------------eEEEEeCCCCceee
Q 020798          153 LPAHSD--------------------PV-TAVDFNRDGTMIVTSSYDG------------------LCRIWDASTGHCMK  193 (321)
Q Consensus       153 ~~~~~~--------------------~v-~~~~~~~~~~~l~~~~~dg------------------~i~~~d~~~~~~~~  193 (321)
                      ++....                    .+ .+.++.+.+..++.++.++                  .+.-+|..+++..-
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            543211                    01 1234444556777776554                  68888999988765


Q ss_pred             eeccCCC--------CCeEEEEE-ccCCC---EEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEE
Q 020798          194 TLIDDEN--------PPVSFVKF-SPNGK---FILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIV  261 (321)
Q Consensus       194 ~~~~~~~--------~~~~~~~~-~~~g~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (321)
                      .......        ........ .-+|.   .+++++.+|.+..+|.++++++-........   +.   ..+ +..++
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~---~~---~~~-~~vyv  343 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP---MA---YDP-GLVYL  343 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccc---cc---cCC-ceEEE
Confidence            5422111        00000111 11333   5777888999999999999987765321000   00   001 22111


Q ss_pred             E-----------------eCCCCeEEEEEcccceEEEEecCCC--------CCeE--EEEecCCCceEEEEeecCCccEE
Q 020798          262 S-----------------GSEDSCVYLWELQSRKVVQKLEGHT--------DPVI--SVASHPTENIIASGALDNDRTVK  314 (321)
Q Consensus       262 ~-----------------~~~dg~i~vwd~~~~~~~~~~~~h~--------~~v~--~~~~~p~~~~l~s~~~d~~~~i~  314 (321)
                      .                 ...+|.|.-.|+.+++.+.+.....        .+..  .++.  .+..|..|+  .||.|+
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~--~dG~l~  419 (488)
T cd00216         344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA--ADGYFR  419 (488)
T ss_pred             ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEEC--CCCeEE
Confidence            1                 1246778888888888776654321        1111  1222  345666665  357787


Q ss_pred             Ecccc
Q 020798          315 IWTQE  319 (321)
Q Consensus       315 iw~~~  319 (321)
                      .+|.+
T Consensus       420 ald~~  424 (488)
T cd00216         420 AFDAT  424 (488)
T ss_pred             EEECC
Confidence            77764

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.25  E-value=0.0029  Score=56.00  Aligned_cols=186  Identities=19%  Similarity=0.288  Sum_probs=109.0

Q ss_pred             CCCcEEEEecCCcceeeeeecCcc--------------------cE-EEEEECCCCCEEEEeeCCC--------------
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTN--------------------YV-FCVNFNPQSNMIVSGAFDE--------------  137 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~--------------------~v-~~~~~~~~~~~l~~~~~dg--------------  137 (321)
                      .++.+..+|..+++.+-.......                    .+ ...++.+.+..++.++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            357788889888876554432110                    01 1234455566777776554              


Q ss_pred             ----cEEEEecCCCEEEEEEeCCCCCee------EEEEc----cCCC---EEEEEeCCCeEEEEeCCCCceeeeeccCCC
Q 020798          138 ----TVRIWDVKTGKCLKVLPAHSDPVT------AVDFN----RDGT---MIVTSSYDGLCRIWDASTGHCMKTLIDDEN  200 (321)
Q Consensus       138 ----~i~~wd~~~~~~~~~~~~~~~~v~------~~~~~----~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  200 (321)
                          .+.-+|.++++..-.++.-.....      ...+.    -++.   .++.++.+|.+..+|.++++.+-...... 
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-  331 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-  331 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-
Confidence                688999999987765532111111      01111    1232   57778889999999999998765432110 


Q ss_pred             CCeEEEEEccCCCEEEEE------------------ecCCeEEEEeCCCCcEEEEEeccCCc------eeEEEeEEEecC
Q 020798          201 PPVSFVKFSPNGKFILVG------------------TLDNTLRLWNYSTGKILKTYTGHTNS------KYCISSTFSVTN  256 (321)
Q Consensus       201 ~~~~~~~~~~~g~~l~~~------------------~~d~~i~i~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  256 (321)
                         ..++.+| + .++.+                  ..++.+.-+|+.+++.+-+.......      ........ ...
T Consensus       332 ---~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~-~~~  405 (488)
T cd00216         332 ---QPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSL-ATA  405 (488)
T ss_pred             ---cccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcce-Eec
Confidence               1123333 2 22222                  23578888999999877665432100      00000001 124


Q ss_pred             CeEEEEeCCCCeEEEEEcccceEEEEecC
Q 020798          257 GKYIVSGSEDSCVYLWELQSRKVVQKLEG  285 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  285 (321)
                      +..++.++.||.|+.+|..+++.+.+.+-
T Consensus       406 g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         406 GNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            56788889999999999999999887654

The alignment model contains an 8-bladed beta-propeller.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.22  E-value=8.8e-06  Score=69.58  Aligned_cols=74  Identities=18%  Similarity=0.210  Sum_probs=61.6

Q ss_pred             ccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC
Q 020798           72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG  147 (321)
Q Consensus        72 h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  147 (321)
                      ....|.+++++|+.+.|+.|+.||+|.+||...+.....  ...-....++|+|+|..+++|+..|.+.+||+.-.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            456789999999999999999999999999877643322  23344678999999999999999999999998644

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.18  E-value=0.0023  Score=56.68  Aligned_cols=222  Identities=16%  Similarity=0.220  Sum_probs=126.3

Q ss_pred             CCCEEEEEeC-CCcEEEEecCCcceeeee---------------ecCcccEEE-----EEECCCCCEEEE-eeCCCcEEE
Q 020798           84 DSRFLVSASD-DKTIRLWDVPTATCLKTL---------------IGHTNYVFC-----VNFNPQSNMIVS-GAFDETVRI  141 (321)
Q Consensus        84 ~~~~l~~~~~-d~~i~iwd~~~~~~~~~~---------------~~~~~~v~~-----~~~~~~~~~l~~-~~~dg~i~~  141 (321)
                      ||++|+.-.. +..|...+++..++-+.+               ..++++|.+     +-++|||+.+.. .-..+.+.+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv  219 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA  219 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence            6788876543 445666666544432211               122333332     234566665432 334567778


Q ss_pred             EecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC----eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEE
Q 020798          142 WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG----LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  217 (321)
                      .|..+.+...++.... ....++++|++.++.+.+.+.    ++...+.........+-  . ..  .-++.++|++...
T Consensus       220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn--i-~~--iea~vkdGK~~~V  293 (635)
T PRK02888        220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN--I-AR--IEEAVKAGKFKTI  293 (635)
T ss_pred             EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc--h-HH--HHHhhhCCCEEEE
Confidence            8888776665554433 345678899999887776432    23332222111000000  0 00  0133457877665


Q ss_pred             EecCCeEEEEeCCC-----CcEEEEEeccCCceeEEEeEEEecCCeEEEEe-CCCCeEEEEEcccceE------------
Q 020798          218 GTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSG-SEDSCVYLWELQSRKV------------  279 (321)
Q Consensus       218 ~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~------------  279 (321)
                        .++.|.++|.++     .+.+..+.....+ ..+.   ..|||++++++ ..+.+|.|.|+.+.+.            
T Consensus       294 --~gn~V~VID~~t~~~~~~~v~~yIPVGKsP-HGV~---vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v  367 (635)
T PRK02888        294 --GGSKVPVVDGRKAANAGSALTRYVPVPKNP-HGVN---TSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV  367 (635)
T ss_pred             --CCCEEEEEECCccccCCcceEEEEECCCCc-cceE---ECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence              367899999988     4555555433322 2222   24788876655 5689999999987542            


Q ss_pred             EEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          280 VQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       280 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +.+.+--.+| ...+|.++|+...|-..|  ..|-.|++++
T Consensus       368 vaevevGlGP-LHTaFDg~G~aytslf~d--sqv~kwn~~~  405 (635)
T PRK02888        368 VAEPELGLGP-LHTAFDGRGNAYTTLFLD--SQIVKWNIEA  405 (635)
T ss_pred             EEeeccCCCc-ceEEECCCCCEEEeEeec--ceeEEEehHH
Confidence            3333332333 567889999888877765  5788999864

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.17  E-value=0.0025  Score=52.14  Aligned_cols=238  Identities=13%  Similarity=0.223  Sum_probs=131.3

Q ss_pred             EEEEECCCCCEEEEEe----------CCCcEEEEecCCcceeeeeecCc-------ccEEEEEECCCCCEEEEee--CCC
Q 020798           77 SDLVFSSDSRFLVSAS----------DDKTIRLWDVPTATCLKTLIGHT-------NYVFCVNFNPQSNMIVSGA--FDE  137 (321)
Q Consensus        77 ~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~--~dg  137 (321)
                      ..+..+|+++.+++++          ..-.|.+||..+-.....+.-..       ......+++.++++++...  -..
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            4467899999888753          23358999998876554332111       1122356778888776543  345


Q ss_pred             cEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCC-CCceeee---eccC-CCCCeEEEEEccCC
Q 020798          138 TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS-TGHCMKT---LIDD-ENPPVSFVKFSPNG  212 (321)
Q Consensus       138 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~---~~~~-~~~~~~~~~~~~~g  212 (321)
                      .|.|.|+..++.+..++...  +.. .+-...+.|.+-+.||.+.-..+. .|+...+   ++.. ..+....-++...+
T Consensus       119 SVtVVDl~~~kvv~ei~~PG--C~~-iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~  195 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDTPG--CWL-IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG  195 (342)
T ss_dssp             EEEEEETTTTEEEEEEEGTS--EEE-EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred             eEEEEECCCCceeeeecCCC--EEE-EEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence            67888888888777665422  222 221122457788889988877776 4443322   2222 22222333454444


Q ss_pred             CEEEEEecCCeEEEEeCCCCcEE--EEEeccC----Cce-----eEEEeEEEecCCeEEEE--eCC-----CC--eEEEE
Q 020798          213 KFILVGTLDNTLRLWNYSTGKIL--KTYTGHT----NSK-----YCISSTFSVTNGKYIVS--GSE-----DS--CVYLW  272 (321)
Q Consensus       213 ~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~----~~~-----~~~~~~~~~~~~~~l~~--~~~-----dg--~i~vw  272 (321)
                      ..++-.+.+|.|+-.|+......  ..+....    ...     +.+. .+....+++++.  .+.     |+  .|-++
T Consensus       196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~-A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI-AYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E-EEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee-eeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            44544678899999888765432  2222110    000     1111 122233333221  111     22  46777


Q ss_pred             EcccceEEEEecCCCCCeEEEEecCCCc-eEEEEeecCCccEEEccccc
Q 020798          273 ELQSRKVVQKLEGHTDPVISVASHPTEN-IIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       273 d~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~d~~~~i~iw~~~~  320 (321)
                      |+.+++.+.++.. ..++.+++.+.+.. +|.+.+ .+++.+.+||...
T Consensus       275 D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~-~~~~~l~v~D~~t  321 (342)
T PF06433_consen  275 DLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALS-AGDGTLDVYDAAT  321 (342)
T ss_dssp             ETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEE-TTTTEEEEEETTT
T ss_pred             ECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEc-CCCCeEEEEeCcC
Confidence            8899999988874 34688999998875 454433 3568899999753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.0036  Score=53.51  Aligned_cols=225  Identities=18%  Similarity=0.231  Sum_probs=138.0

Q ss_pred             cEEEEEECCCCCEEEEEe-CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEE-EEeeCCCcEEEEecCCCEEEEE
Q 020798           75 GVSDLVFSSDSRFLVSAS-DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVKTGKCLKV  152 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~  152 (321)
                      ....+.+.+++..+.... ....+...+............-......+++++.++.+ +....+..|.+.|..+.+....
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            345567778875544333 22234444444222111111111334567888888754 4555568999999887776666


Q ss_pred             EeCCCCCeeEEEEccCCCEEEEEeC---CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEe
Q 020798          153 LPAHSDPVTAVDFNRDGTMIVTSSY---DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWN  228 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d  228 (321)
                      ..... ....++++|++..+..+..   ++++.+.|..+.+......... .+ ..++++|+|+.+.+.. .++.|.++|
T Consensus       112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~  188 (381)
T COG3391         112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVID  188 (381)
T ss_pred             eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence            55433 4568999999987766654   6899999998887777643333 23 7789999999776655 688999999


Q ss_pred             CCCCcEEE-E----EeccCCceeEEEeEEEecCCeEEEEeCC---CCeEEEEEcccceEEEE-ecCCCCCeEEEEecCCC
Q 020798          229 YSTGKILK-T----YTGHTNSKYCISSTFSVTNGKYIVSGSE---DSCVYLWELQSRKVVQK-LEGHTDPVISVASHPTE  299 (321)
Q Consensus       229 ~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~p~~  299 (321)
                      .......+ .    ......+ .   .....++|.++.....   ++.+...|..++..... +..-...-..+..+|+|
T Consensus       189 ~~~~~v~~~~~~~~~~~~~~P-~---~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g  264 (381)
T COG3391         189 TSGNSVVRGSVGSLVGVGTGP-A---GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAG  264 (381)
T ss_pred             CCCcceeccccccccccCCCC-c---eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCC
Confidence            77665553 1    1111111 1   1223356765444332   36899999888776553 21111145678899999


Q ss_pred             ceEEEEe
Q 020798          300 NIIASGA  306 (321)
Q Consensus       300 ~~l~s~~  306 (321)
                      ..+-...
T Consensus       265 ~~~yv~~  271 (381)
T COG3391         265 KAAYVAN  271 (381)
T ss_pred             CEEEEEe
Confidence            8877663

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.13  E-value=0.0002  Score=61.71  Aligned_cols=143  Identities=13%  Similarity=0.196  Sum_probs=79.3

Q ss_pred             CCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEE
Q 020798          156 HSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKIL  235 (321)
Q Consensus       156 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~  235 (321)
                      .......+.++|+++.+++ +.+|...++.....+... .     .....+.|.+.++ +++-...+.|.|+.--+.+..
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-F-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-E-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-c-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccc
Confidence            3445688999999998877 566777788744332211 1     1123567888555 566666888999742222222


Q ss_pred             EEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEE
Q 020798          236 KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKI  315 (321)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~i  315 (321)
                      ..+....    .+...|.   |..|+..+. +.|.+||..+++.+.++...  +|..+.|++++.++|-.+.+   .+.|
T Consensus       103 k~i~~~~----~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~---~i~i  169 (443)
T PF04053_consen  103 KSIKLPF----SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD---SIYI  169 (443)
T ss_dssp             -----SS-----EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S----SEEE
T ss_pred             eEEcCCc----ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC---eEEE
Confidence            2332211    1222332   666665544 48999999999999988743  49999999999999998743   5777


Q ss_pred             cccc
Q 020798          316 WTQE  319 (321)
Q Consensus       316 w~~~  319 (321)
                      ++.+
T Consensus       170 l~~~  173 (443)
T PF04053_consen  170 LKYN  173 (443)
T ss_dssp             EEE-
T ss_pred             EEec
Confidence            7654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.12  E-value=0.0024  Score=55.02  Aligned_cols=161  Identities=17%  Similarity=0.173  Sum_probs=96.6

Q ss_pred             ccEEEEEECCCCCEEEEE---eCC-CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEE-eeCCC--cEEEEecCC
Q 020798           74 QGVSDLVFSSDSRFLVSA---SDD-KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS-GAFDE--TVRIWDVKT  146 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~---~~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~~wd~~~  146 (321)
                      ..+..-+|+|+++.++..   ... ..+.++++.+++...... ....-...+|+|||++|+. ...||  .|+++|+..
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            445566899998866543   222 458889998876433322 2222334679999988654 44555  467778877


Q ss_pred             CEEEEEEeCCCCCeeEEEEccCCCEEEEEeC-CC--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec-CC
Q 020798          147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-DG--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL-DN  222 (321)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-d~  222 (321)
                      +...+ +....+.-..-.|+|+|+.++..+. .|  .|.+++...... ..+...... -..-.++|+|++++..+. +|
T Consensus       272 ~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-~~~p~~SpdG~~i~~~~~~~g  348 (425)
T COG0823         272 KNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-NSNPVWSPDGDKIVFESSSGG  348 (425)
T ss_pred             Cccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-CcCccCCCCCCEEEEEeccCC
Confidence            66333 4433444456789999998876654 44  456666665544 222222221 225679999999987664 34


Q ss_pred             e--EEEEeCCCCcEEEEE
Q 020798          223 T--LRLWNYSTGKILKTY  238 (321)
Q Consensus       223 ~--i~i~d~~~~~~~~~~  238 (321)
                      .  |.+.|+.++..++.+
T Consensus       349 ~~~i~~~~~~~~~~~~~l  366 (425)
T COG0823         349 QWDIDKNDLASGGKIRIL  366 (425)
T ss_pred             ceeeEEeccCCCCcEEEc
Confidence            4  666666555433333

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.12  E-value=7.6e-07  Score=76.36  Aligned_cols=164  Identities=18%  Similarity=0.326  Sum_probs=105.2

Q ss_pred             ccCCcccEEEEEECC-CCCEEEEe----cCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           19 LNGHLRAISSVKFSH-DGRLLASS----SADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~-~g~~l~~~----~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      ..+|.+..++++|++ |.+.||.|    ..|..+.|||+....-   .|.+..+-..+-..+..+++|-.+.+.+.+|..
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt---vPke~~~fs~~~l~gqns~cwlrd~klvlaGm~  174 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT---VPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT  174 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccC---CCccccccccccccCccccccccCcchhhcccc
Confidence            467889999999997 56677776    3467899999876532   111111111123345668889989999999999


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECC-CCCEEEEeeCCCcEEEEe-cCCCE-EEEEEeCC----CCCeeEEEEc
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWD-VKTGK-CLKVLPAH----SDPVTAVDFN  166 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd-~~~~~-~~~~~~~~----~~~v~~~~~~  166 (321)
                      .+.+.++|++-..... ..-.+..+..+.+.| .++++++-. ||.|-+|| .++-+ +...+...    ...+..++|+
T Consensus       175 sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc  252 (783)
T KOG1008|consen  175 SRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC  252 (783)
T ss_pred             cchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence            9999999987332111 111233466677888 667776644 99999999 33222 12222111    1248899999


Q ss_pred             cCCC-EEEEEe-CCCeEEEEeCC
Q 020798          167 RDGT-MIVTSS-YDGLCRIWDAS  187 (321)
Q Consensus       167 ~~~~-~l~~~~-~dg~i~~~d~~  187 (321)
                      |..+ .+++.. ..++|+++|+.
T Consensus       253 Ptrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  253 PTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cCCcchhhhhccCcceEEEeccc
Confidence            9654 344444 56789999975

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.11  E-value=0.0024  Score=49.64  Aligned_cols=99  Identities=12%  Similarity=0.079  Sum_probs=68.7

Q ss_pred             CCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEE
Q 020798           84 DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAV  163 (321)
Q Consensus        84 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  163 (321)
                      -|++++.|+..|.+++.+..++.....+......-......+++..+..++.|++.+..|.++..++...+.......+-
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP  141 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP  141 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence            46789999999999999999986544443322222234467889999999999999999999988888776655444455


Q ss_pred             EEccCCCEEEEEeCCCeEE
Q 020798          164 DFNRDGTMIVTSSYDGLCR  182 (321)
Q Consensus       164 ~~~~~~~~l~~~~~dg~i~  182 (321)
                      +..|....|..+...|.+.
T Consensus       142 ~i~~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen  142 VIAPGDGSLYAAITAGAVL  160 (354)
T ss_pred             eecCCCceEEEEeccceEE
Confidence            5666333444444445443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.10  E-value=0.004  Score=51.96  Aligned_cols=275  Identities=20%  Similarity=0.245  Sum_probs=122.5

Q ss_pred             EECCCCCEEEE-ecCCceEEEeeccccCCCCCCCCCccccccccc-ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcce
Q 020798           30 KFSHDGRLLAS-SSADKTLLTYSLSSISNSDSTPPSPLQKFTGHE-QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC  107 (321)
Q Consensus        30 ~~s~~g~~l~~-~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  107 (321)
                      +|.+||+.|+- +..|+.-.+|.+.-.       ...+..++... .......++|+.+.++.......|+..|+.+.+.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~-------t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~  114 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLA-------TGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE  114 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETT-------T-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcc-------cCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence            57889976655 444666655543211       01122233222 1122356678888877666667898899988875


Q ss_pred             eeeeecCcccEEEEEE--CCCCCEEEEee---C-------------------CCcEEEEecCCCEEEEEEeCCCCCeeEE
Q 020798          108 LKTLIGHTNYVFCVNF--NPQSNMIVSGA---F-------------------DETVRIWDVKTGKCLKVLPAHSDPVTAV  163 (321)
Q Consensus       108 ~~~~~~~~~~v~~~~~--~~~~~~l~~~~---~-------------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~  163 (321)
                      ...+......+-...|  +.++..++-.-   .                   ...|...|+++|+....+. ...-+..+
T Consensus       115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~  193 (386)
T PF14583_consen  115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV  193 (386)
T ss_dssp             EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred             EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence            4434434444433334  44555543221   1                   1235555677776544443 34456778


Q ss_pred             EEccCCCEEE-EEeC---CC-eEEEEeCCC-CceeeeeccC-CCCCeEEEEEccCCCEEEEEe-----cCCeEEEEeCCC
Q 020798          164 DFNRDGTMIV-TSSY---DG-LCRIWDAST-GHCMKTLIDD-ENPPVSFVKFSPNGKFILVGT-----LDNTLRLWNYST  231 (321)
Q Consensus       164 ~~~~~~~~l~-~~~~---dg-~i~~~d~~~-~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~-----~d~~i~i~d~~~  231 (321)
                      .|+|....++ .|-+   +. .-|+|-+++ +...+.+... ....+..=-|.|+|..|.--+     .+..|.-+|+.+
T Consensus       194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t  273 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT  273 (386)
T ss_dssp             EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred             ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence            8898655444 4432   22 235665432 2222222111 122234446889998776532     234577778887


Q ss_pred             CcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC----------------CeEEEEEcccceEE--EE-------ecCC
Q 020798          232 GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED----------------SCVYLWELQSRKVV--QK-------LEGH  286 (321)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~~~--~~-------~~~h  286 (321)
                      ++........    .+.- ..+.+||.+++.=+.|                ..|++++++.++..  ..       ++++
T Consensus       274 ~~~~~~~~~p----~~~H-~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~  348 (386)
T PF14583_consen  274 GERRRLMEMP----WCSH-FMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD  348 (386)
T ss_dssp             --EEEEEEE-----SEEE-EEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTB
T ss_pred             CCceEEEeCC----ceee-eEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCC
Confidence            7553322211    1221 2234677776643333                25677888765532  11       1222


Q ss_pred             CCC-eEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          287 TDP-VISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       287 ~~~-v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      ... =....|+||+++++-.| |..|...||-.
T Consensus       349 ~q~~hPhp~FSPDgk~VlF~S-d~~G~~~vY~v  380 (386)
T PF14583_consen  349 RQVTHPHPSFSPDGKWVLFRS-DMEGPPAVYLV  380 (386)
T ss_dssp             SSTT----EE-TTSSEEEEEE--TTSS-EEEEE
T ss_pred             CccCCCCCccCCCCCEEEEEC-CCCCCccEEEE
Confidence            211 14578999999998877 34566666644

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.08  E-value=0.00074  Score=58.05  Aligned_cols=189  Identities=18%  Similarity=0.175  Sum_probs=105.8

Q ss_pred             eeeecCcccEEEEEECCCCCEEEEe---eCC-CcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEe-CCC--eE
Q 020798          109 KTLIGHTNYVFCVNFNPQSNMIVSG---AFD-ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS-YDG--LC  181 (321)
Q Consensus       109 ~~~~~~~~~v~~~~~~~~~~~l~~~---~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~i  181 (321)
                      ..+..-...+..-+|+|++..++..   ... ..++++++.+++...... ....-...+|+|||+.++.+. .||  .|
T Consensus       186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccE
Confidence            3333334456667889998776543   222 468999998876554443 233445678999999877654 455  46


Q ss_pred             EEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec-CC--eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe
Q 020798          182 RIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL-DN--TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK  258 (321)
Q Consensus       182 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (321)
                      .++|+.+....+ +... ...-..-.|+|+|++++-.+. .|  .|.+++...... ..+........   .....+||+
T Consensus       265 y~~dl~~~~~~~-Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~---~p~~SpdG~  338 (425)
T COG0823         265 YLMDLDGKNLPR-LTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS---NPVWSPDGD  338 (425)
T ss_pred             EEEcCCCCccee-cccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc---CccCCCCCC
Confidence            677887665332 3222 222235679999999877653 44  466666665544 33332222211   122347888


Q ss_pred             EEEEeCC-CCe--EEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEE
Q 020798          259 YIVSGSE-DSC--VYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG  305 (321)
Q Consensus       259 ~l~~~~~-dg~--i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  305 (321)
                      +++..+. +|.  |.+.|+.++..+..+. +..-...-.|.|+++.+...
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence            8776553 344  5666665554333222 22222344556666655544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.06  E-value=0.0031  Score=49.01  Aligned_cols=142  Identities=15%  Similarity=0.119  Sum_probs=86.7

Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEE
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVD  164 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  164 (321)
                      ..+++.|+-.+.+.--|..++....... ....+.+-+.- -|++++.|...|.+++.+.++|.....+...+.-=....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            4567788888888888888876543321 11222221111 377899999999999999999976655543222112234


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          165 FNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       165 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                      ..+++..+..++.|++.+..|.++..++.+..-. +.....-++.|....|..+...|.+.--..
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcg-G~~f~sP~i~~g~~sly~a~t~G~vlavt~  164 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-GGTFVSPVIAPGDGSLYAAITAGAVLAVTK  164 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccC-CceeccceecCCCceEEEEeccceEEEEcc
Confidence            5678889999999999999999987776553221 111222345552223444444454444433

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.04  E-value=0.00015  Score=63.45  Aligned_cols=115  Identities=15%  Similarity=0.214  Sum_probs=86.3

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeee-cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEE---
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI-GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKC---  149 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---  149 (321)
                      ..|.--+++..+++++.|+.-|.+++|+-..+....... +-...+..+.++++..+++.|+..|.|.++.++.+.+   
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            344444566788999999999999999987775433222 2334456677888888888999999999998865322   


Q ss_pred             EEEE---eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 020798          150 LKVL---PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST  188 (321)
Q Consensus       150 ~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  188 (321)
                      +..-   +.|...|++++|++++..+++|...|.|.+-.+..
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            1111   23678899999999999999999999998877765

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.97  E-value=1.3e-05  Score=60.50  Aligned_cols=144  Identities=16%  Similarity=0.186  Sum_probs=86.5

Q ss_pred             EEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCC-CcEEEEEeccCCceeEEEe
Q 020798          172 IVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST-GKILKTYTGHTNSKYCISS  250 (321)
Q Consensus       172 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~  250 (321)
                      +...+.+|.++-++++..+........+...   ......+..+++|+.+|.|.+|...- +.....+........+  .
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~--~  107 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDL--G  107 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccccccee--c
Confidence            4455677777777766433211110001111   12223455688999999999998652 1111111111111111  1


Q ss_pred             EEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC-CCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          251 TFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT-DPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .....++.+..++++||.||.|++...+.+.....|. .++..+..+..++.++.+-...|..++.|++++
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            1112345678899999999999999888877777777 677777777777888887222457899999875

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=7.6e-05  Score=64.42  Aligned_cols=94  Identities=17%  Similarity=0.273  Sum_probs=76.2

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCee-EEEEccCCCEEEEEeCCCeEEEEeCCCCceeee
Q 020798          116 NYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVT-AVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKT  194 (321)
Q Consensus       116 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  194 (321)
                      ..+..+.|+|.-..+|.+..+|.+-+..+. -+.+.+++.|..+++ +++|.|||+.+++|-.||+|++.|..++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            446778999999999999999999998887 566777887777777 999999999999999999999999998876655


Q ss_pred             eccCCCCCeEEEEEcc
Q 020798          195 LIDDENPPVSFVKFSP  210 (321)
Q Consensus       195 ~~~~~~~~~~~~~~~~  210 (321)
                      ........+..+.|++
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            3333344566677764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.93  E-value=0.0061  Score=48.14  Aligned_cols=187  Identities=17%  Similarity=0.241  Sum_probs=104.1

Q ss_pred             EECCCCCEEEEEeCC-----CcEEEEecCCc-ceeeeeecCcccEEEEEECCCCCEEEEeeCC-----------------
Q 020798           80 VFSSDSRFLVSASDD-----KTIRLWDVPTA-TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD-----------------  136 (321)
Q Consensus        80 ~~~~~~~~l~~~~~d-----~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------  136 (321)
                      .|||||++|++.-+|     |.|-|||.+.+ +.+..+..|.-....+.+.+||+.++.+...                 
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            589999999876444     57999998743 3344566677677788999999988876431                 


Q ss_pred             -CcEEEEecCCCEEEEE--Ee--CCCCCeeEEEEccCCCEEEEEeCCCeEE-----EEeCCCCceeeeeccC------CC
Q 020798          137 -ETVRIWDVKTGKCLKV--LP--AHSDPVTAVDFNRDGTMIVTSSYDGLCR-----IWDASTGHCMKTLIDD------EN  200 (321)
Q Consensus       137 -g~i~~wd~~~~~~~~~--~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~-----~~d~~~~~~~~~~~~~------~~  200 (321)
                       -.+.+.|..+++.+.+  ++  .+.-.+..++..++|+..+.+-+.|--.     +=-...++.+.-+...      ..
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a  279 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA  279 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence             1122223333433322  22  2334567778888887766665444210     0001112211111100      01


Q ss_pred             CCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEE
Q 020798          201 PPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       201 ~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd  273 (321)
                      ..+-+++.+.+..+++..+ ..+..-+||..++..+..-.-....  .+.     ....-++..+.+|.+.++.
T Consensus       280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daa--Gva-----~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAA--GVA-----AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccc--cce-----eccCceEEecCCceEEecc
Confidence            2355677776555665555 4557889999999877654322111  111     1223355567778888774

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.91  E-value=0.0081  Score=48.95  Aligned_cols=228  Identities=20%  Similarity=0.288  Sum_probs=123.2

Q ss_pred             CCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeee--
Q 020798           33 HDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKT--  110 (321)
Q Consensus        33 ~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--  110 (321)
                      ..++.|+.|.++| +.+|+...       +..+....  +...|..+...++-+.|++- .|+.+.++++........  
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~-------~~~~~~i~--~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSD-------PSKPTRIL--KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecC-------CccceeEe--ecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccc
Confidence            4578899998888 77887621       11111111  12338999999887766554 459999999865433221  


Q ss_pred             ------------eecCcccEEEEE--ECCCCCEEEEeeCCCcEEEEecCCC-----EEEEEEeCCCCCeeEEEEccCCCE
Q 020798          111 ------------LIGHTNYVFCVN--FNPQSNMIVSGAFDETVRIWDVKTG-----KCLKVLPAHSDPVTAVDFNRDGTM  171 (321)
Q Consensus       111 ------------~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~  171 (321)
                                  .......+...+  -.+.+...++......|.+|.....     +..+.+.. ...+.+++|.  ++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~  150 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNK  150 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCE
Confidence                        111122333333  2233444444445568888877543     34444443 3677889998  456


Q ss_pred             EEEEeCCCeEEEEeCCCCceeeeeccC-----------CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEE--EE
Q 020798          172 IVTSSYDGLCRIWDASTGHCMKTLIDD-----------ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILK--TY  238 (321)
Q Consensus       172 l~~~~~dg~i~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~--~~  238 (321)
                      ++.+..++ ..+.|+.++....-....           ...++..+.. +++.+|++.  +..-.+.|. .|+..+  .+
T Consensus       151 i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i  225 (275)
T PF00780_consen  151 ICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTI  225 (275)
T ss_pred             EEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEE
Confidence            77776554 678888865432221111           1112333333 345555542  333334443 343332  23


Q ss_pred             eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCC
Q 020798          239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGH  286 (321)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h  286 (321)
                      .....+ .  ...+   ...+|++-.. +.|.||++.++++++.+...
T Consensus       226 ~W~~~p-~--~~~~---~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  226 QWSSAP-Q--SVAY---SSPYLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             EcCCch-h--EEEE---ECCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence            222222 1  1222   2346666555 55999999999998887754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.91  E-value=0.012  Score=51.03  Aligned_cols=242  Identities=17%  Similarity=0.203  Sum_probs=124.2

Q ss_pred             cEEEEEECCCCCEEEEE-eCCC----cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCC-----------c
Q 020798           75 GVSDLVFSSDSRFLVSA-SDDK----TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE-----------T  138 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~-~~d~----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~  138 (321)
                      .+....++|+++++|.+ +..|    .++++|+.+++.+....... ....+.|.++++.|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999988855 3334    49999999997654322111 122389999988776554332           3


Q ss_pred             EEEEecCCCEE--EEEEeCCCCC--eeEEEEccCCCEEEEEeC---C-CeEEEEeCCCC----ceeeeeccCCCCCeEEE
Q 020798          139 VRIWDVKTGKC--LKVLPAHSDP--VTAVDFNRDGTMIVTSSY---D-GLCRIWDASTG----HCMKTLIDDENPPVSFV  206 (321)
Q Consensus       139 i~~wd~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-g~i~~~d~~~~----~~~~~~~~~~~~~~~~~  206 (321)
                      |+.|.+.+...  ...+......  ...+..++++++++....   + ..+.+.|+..+    .....+..........+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            77788765532  2333333333  467888999998765432   2 35777888764    22233322222222223


Q ss_pred             EEccCCCEEEEEe---cCCeEEEEeCCCCc---EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC--eEEEEEcccce
Q 020798          207 KFSPNGKFILVGT---LDNTLRLWNYSTGK---ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS--CVYLWELQSRK  278 (321)
Q Consensus       207 ~~~~~g~~l~~~~---~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~  278 (321)
                      .. ..+.+++...   ..+.|.-.++.+..   ....+..+..... +.. +....+.+++.-..++  .|+++++..+.
T Consensus       284 ~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~-l~~-~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~  360 (414)
T PF02897_consen  284 DH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS-LED-VSLFKDYLVLSYRENGSSRLRVYDLDDGK  360 (414)
T ss_dssp             EE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE-EEE-EEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred             Ec-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee-EEE-EEEECCEEEEEEEECCccEEEEEECCCCc
Confidence            22 3444444433   23567777777654   2223333333221 211 1122445555555554  58889988333


Q ss_pred             EEEEecC-CCCCeEEEEecCCCce--EEEEeecCCccEEEccccc
Q 020798          279 VVQKLEG-HTDPVISVASHPTENI--IASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       279 ~~~~~~~-h~~~v~~~~~~p~~~~--l~s~~~d~~~~i~iw~~~~  320 (321)
                      ....+.. -.+.|..+...++++.  +...|.-...+|.-||++.
T Consensus       361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t  405 (414)
T PF02897_consen  361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT  405 (414)
T ss_dssp             EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred             EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            3333332 2344666665555543  3333443445666666543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.90  E-value=0.012  Score=50.74  Aligned_cols=240  Identities=16%  Similarity=0.195  Sum_probs=115.8

Q ss_pred             ccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe-c
Q 020798           24 RAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD-V  102 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd-~  102 (321)
                      +.+-++.|+.+.+ |+.-..||.+++|++.+.. .-. .........-....+....+..+|-.+++  .++.+.+.+ .
T Consensus        81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fs-l~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~  155 (410)
T PF04841_consen   81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFS-LGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNI  155 (410)
T ss_pred             CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eec-hhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCc
Confidence            6788888987655 4455689999999885432 000 01111111112222333344445533333  334443332 2


Q ss_pred             CCcceeee---eec-------CcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798          103 PTATCLKT---LIG-------HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus       103 ~~~~~~~~---~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      ......+.   ...       +........++.+....+....++.+.+.+-...+.   +. ..+++..++.+|+++++
T Consensus       156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~i  231 (410)
T PF04841_consen  156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFI  231 (410)
T ss_pred             cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEE
Confidence            11100010   000       000000012333444444444445555443222111   21 24689999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEE
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF  252 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  252 (321)
                      +.-..+|.+.+....-.+....+..........+.|+-+...++. - ...+.++......              +.  +
T Consensus       232 Al~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~-~-~~~l~lvg~~~~~--------------~~--~  293 (410)
T PF04841_consen  232 ALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLS-W-EDELLLVGPDGDS--------------IS--F  293 (410)
T ss_pred             EEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEE-e-CCEEEEECCCCCc--------------eE--E
Confidence            999999999888765544444443333334556777655432222 1 3344444321111              11  1


Q ss_pred             EecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEE
Q 020798          253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVIS  292 (321)
Q Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  292 (321)
                      . .++..++..--|| +||+.-..-+.++++......|..
T Consensus       294 ~-~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~~~~if~  331 (410)
T PF04841_consen  294 W-YDGPVILVSEIDG-VRIITSTSHEFLQRVPDSTENIFR  331 (410)
T ss_pred             e-ccCceEEeccCCc-eEEEeCCceEEEEECCHHHHHHhc
Confidence            1 1233445555566 788876666666666544433433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.87  E-value=0.011  Score=49.37  Aligned_cols=224  Identities=19%  Similarity=0.196  Sum_probs=104.2

Q ss_pred             EECCCCCEEEEEe-CCC--cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC
Q 020798           80 VFSSDSRFLVSAS-DDK--TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH  156 (321)
Q Consensus        80 ~~~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  156 (321)
                      +|.++|+.|+.++ .||  .+.+.|+.+++..+-..+.........++|+.+.++.......++..|+++.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            5678887665444 455  5667788888754332222222224567788888766655678888999988766655555


Q ss_pred             CCCeeEEEEc--cCCCEEEEEe---CC-------------------CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCC
Q 020798          157 SDPVTAVDFN--RDGTMIVTSS---YD-------------------GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNG  212 (321)
Q Consensus       157 ~~~v~~~~~~--~~~~~l~~~~---~d-------------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g  212 (321)
                      ..-+....|.  .+++.++-.-   .+                   ..|.-.|+.+++....+  ....-+..+.|+|..
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~--~~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF--EDTDWLGHVQFSPTD  199 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE--EESS-EEEEEEETTE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE--ecCccccCcccCCCC
Confidence            5555445553  4455543321   11                   12344456665532222  223446678899976


Q ss_pred             CEEEEEecCC-----eEEEEeCC-CCcEEEEEeccCCceeEEEeEEEecCCeEEEE-----eCCCCeEEEEEcccceEEE
Q 020798          213 KFILVGTLDN-----TLRLWNYS-TGKILKTYTGHTNSKYCISSTFSVTNGKYIVS-----GSEDSCVYLWELQSRKVVQ  281 (321)
Q Consensus       213 ~~l~~~~~d~-----~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~dg~i~vwd~~~~~~~~  281 (321)
                      ..+++-+..|     .-|||-+. .+.....+..+.. .-.+.--|+.+||..+.-     ++.+..|.-+|..+++...
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~  278 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR  278 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred             CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence            6666654333     12555443 2333333333332 223334455677765442     3345567778887765432


Q ss_pred             EecCCCCCeEEEEecCCCceEEEEeec
Q 020798          282 KLEGHTDPVISVASHPTENIIASGALD  308 (321)
Q Consensus       282 ~~~~h~~~v~~~~~~p~~~~l~s~~~d  308 (321)
                      ...  ..+-.-+..++||+++|.=+.|
T Consensus       279 ~~~--~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  279 LME--MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred             EEe--CCceeeeEEcCCCCEEEecCCC
Confidence            111  1233456678999988765543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.84  E-value=0.017  Score=50.21  Aligned_cols=242  Identities=17%  Similarity=0.191  Sum_probs=118.6

Q ss_pred             cEEEEEECCCCCEEEEe-----cCCceEEEeeccccCCCCCCCCCccc-ccccccccEEEEEECCCCCEEEEEeCCC---
Q 020798           25 AISSVKFSHDGRLLASS-----SADKTLLTYSLSSISNSDSTPPSPLQ-KFTGHEQGVSDLVFSSDSRFLVSASDDK---   95 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~-----~~d~~v~~~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~l~~~~~d~---   95 (321)
                      .+...++||+|+++|.+     +....+++.|+....        .+. .+..  .....+.|.++++.|+....+.   
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~--------~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~  194 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK--------FLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQR  194 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE--------EEEEEEEE--EESEEEEECTTSSEEEEEECSTTTS
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc--------CcCCcccc--cccceEEEeCCCCEEEEEEeCcccc
Confidence            44467899999998854     333458888875421        111 1111  1112399999988776554333   


Q ss_pred             --------cEEEEecCCccee--eeeecCc-cc-EEEEEECCCCCEEEEee---CC-CcEEEEecCCC----EEEEEEeC
Q 020798           96 --------TIRLWDVPTATCL--KTLIGHT-NY-VFCVNFNPQSNMIVSGA---FD-ETVRIWDVKTG----KCLKVLPA  155 (321)
Q Consensus        96 --------~i~iwd~~~~~~~--~~~~~~~-~~-v~~~~~~~~~~~l~~~~---~d-g~i~~wd~~~~----~~~~~~~~  155 (321)
                              .|+.|.+.+....  ..+.... .. ...+..++++++++...   .+ ..+++.|+..+    .....+..
T Consensus       195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~  274 (414)
T PF02897_consen  195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP  274 (414)
T ss_dssp             S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred             cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence                    3777888766432  2222222 22 56788899999876432   22 35778888764    22233322


Q ss_pred             CCCCe-eEEEEccCCCEEEEEe---CCCeEEEEeCCCCce--eeeeccCCCCCeEEEEEccCCCEEEEEe-cCC--eEEE
Q 020798          156 HSDPV-TAVDFNRDGTMIVTSS---YDGLCRIWDASTGHC--MKTLIDDENPPVSFVKFSPNGKFILVGT-LDN--TLRL  226 (321)
Q Consensus       156 ~~~~v-~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~--~i~i  226 (321)
                      ....+ ..+... .+.+++...   .++.|.-.++.....  .......+...+....+...+.+|+... .++  .|++
T Consensus       275 ~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v  353 (414)
T PF02897_consen  275 REDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRV  353 (414)
T ss_dssp             SSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEE
Confidence            33333 334333 444444443   245666667765542  1212223333333334444555665544 343  6899


Q ss_pred             EeCCCCcEEEEEeccCCceeEEEeEEEec-CCeEEEEe---CCCCeEEEEEcccceE
Q 020798          227 WNYSTGKILKTYTGHTNSKYCISSTFSVT-NGKYIVSG---SEDSCVYLWELQSRKV  279 (321)
Q Consensus       227 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~---~~dg~i~vwd~~~~~~  279 (321)
                      +++..+.............  +...-... ...+.+.-   ...+++..||+.+++.
T Consensus       354 ~~~~~~~~~~~~~~p~~g~--v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  354 YDLDDGKESREIPLPEAGS--VSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EETT-TEEEEEEESSSSSE--EEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EECCCCcEEeeecCCcceE--EeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            9988344444443322221  11111111 22232222   2345677788877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.82  E-value=0.0033  Score=56.54  Aligned_cols=148  Identities=13%  Similarity=0.159  Sum_probs=82.8

Q ss_pred             ccEEEEEECCCCCEEEEec------CCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC---
Q 020798           24 RAISSVKFSHDGRLLASSS------ADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD---   94 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d---   94 (321)
                      ..+...+++|+|+.+|...      .|..-.+|-...    . ....++  ..+  .....-.|+|+|+.|.+....   
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~----g-g~~~~l--t~g--~~~t~PsWspDG~~lw~v~dg~~~  420 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL----G-GVAVQV--LEG--HSLTRPSWSLDADAVWVVVDGNTV  420 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC----C-Ccceee--ecC--CCCCCceECCCCCceEEEecCcce
Confidence            4677889999999887654      244334443211    0 011111  122  136678899998877766432   


Q ss_pred             ---------CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEE---EecCCCEEEE----EE-eCCC
Q 020798           95 ---------KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRI---WDVKTGKCLK----VL-PAHS  157 (321)
Q Consensus        95 ---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~---wd~~~~~~~~----~~-~~~~  157 (321)
                               +.+.+.+++.+....   .....|..+.|+|||..++... ++.|++   -....|....    .+ ..-.
T Consensus       421 ~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~  496 (591)
T PRK13616        421 VRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG  496 (591)
T ss_pred             EEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC
Confidence                     233333443333211   2345699999999999887655 467766   4434443111    12 2223


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCeEEEEe
Q 020798          158 DPVTAVDFNRDGTMIVTSSYDGLCRIWD  185 (321)
Q Consensus       158 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d  185 (321)
                      ..+.++.|.+++.++ ++..++.-.+|.
T Consensus       497 ~~~~~l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        497 DTAVSLDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             CccccceEecCCEEE-EEecCCCCceEE
Confidence            346889999998854 444444334443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.013  Score=48.17  Aligned_cols=216  Identities=16%  Similarity=0.163  Sum_probs=118.5

Q ss_pred             EECCCCC-EEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeC---
Q 020798           80 VFSSDSR-FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPA---  155 (321)
Q Consensus        80 ~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---  155 (321)
                      .|.++.. ++.+--..+.|.-|+..+++. ..+. +...+.++..-..+..|+++..  -+.+++.+++..+..+..   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            4666665 445556677888888876642 2222 2333344444444455655543  345666655554222211   


Q ss_pred             --CCCCeeEEEEccCCCEEEEEeC-----------CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec-C
Q 020798          156 --HSDPVTAVDFNRDGTMIVTSSY-----------DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL-D  221 (321)
Q Consensus       156 --~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-d  221 (321)
                        .....+.....|+|.+.++...           -|.++-+|. .+...+ +....-...+.++|+||++.+..+.. .
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~-l~~~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVR-LLDDDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEE-eecCcEEecCceEECCCCCEEEEEeCCC
Confidence              1134567788888886654333           133444443 333332 22222233467999999988877755 4


Q ss_pred             CeEEEEeCCC--Cc----E-EEEEeccCCceeEEEeEEEecCCeEEEEeCCCC-eEEEEEcccceEEEEecCCCCCeEEE
Q 020798          222 NTLRLWNYST--GK----I-LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS-CVYLWELQSRKVVQKLEGHTDPVISV  293 (321)
Q Consensus       222 ~~i~i~d~~~--~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~h~~~v~~~  293 (321)
                      +.|.-|++..  +.    . ........+..   .......+|.+.+++..+| .|.+|+.. ++++..+.-+...+.++
T Consensus       185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P---DG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~  260 (307)
T COG3386         185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLP---DGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP  260 (307)
T ss_pred             CeEEEEecCcccCccCCcceEEEccCCCCCC---CceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence            7888887652  11    1 11111111111   1111224566665555554 89999987 88888888776778888


Q ss_pred             EecC-CCc-eEEEE
Q 020798          294 ASHP-TEN-IIASG  305 (321)
Q Consensus       294 ~~~p-~~~-~l~s~  305 (321)
                      +|-- +.+ +++++
T Consensus       261 ~FgG~~~~~L~iTs  274 (307)
T COG3386         261 AFGGPDLNTLYITS  274 (307)
T ss_pred             eEeCCCcCEEEEEe
Confidence            8853 334 44443

>smart00320 WD40 WD40 repeats

Probab=97.81  E-value=7.7e-05  Score=39.71  Aligned_cols=37  Identities=46%  Similarity=0.682  Sum_probs=32.6

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEee
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYS   51 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~   51 (321)
                      ....+..|...|.++.|+|+++++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3455678999999999999999999999999999984

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.79  E-value=0.03  Score=51.77  Aligned_cols=280  Identities=18%  Similarity=0.203  Sum_probs=146.1

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      ++.|.-..|--|+.+|+++..||.+.-|-+.........+    +...--..++.--.|+..++.-+.+..|+-..+|.-
T Consensus       583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~----Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~  658 (1096)
T KOG1897|consen  583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDR----KKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS  658 (1096)
T ss_pred             chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccc----cccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec
Confidence            4566667777778999999999999877554322111110    000011233443445544433333445555555543


Q ss_pred             CCcceeeeeecCcccEEEEEECCC--CCEEEEeeCCCcEEEEecCCCE--EEEEEeCCCCCeeEEEEccCCCEEEEEeCC
Q 020798          103 PTATCLKTLIGHTNYVFCVNFNPQ--SNMIVSGAFDETVRIWDVKTGK--CLKVLPAHSDPVTAVDFNRDGTMIVTSSYD  178 (321)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  178 (321)
                      ...-+...+. ....-.-+.|+.+  +..++++.. +.+++..+..-+  -+++++.+. ....+++.+....+.+.+..
T Consensus       659 n~kLv~spls-~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~~-~prrI~~q~~sl~~~v~s~r  735 (1096)
T KOG1897|consen  659 NGKLVYSPLS-LKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLGE-SPRRICYQESSLTFGVLSNR  735 (1096)
T ss_pred             CCcEEEeccc-hHHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCCC-ChhheEecccceEEEEEecc
Confidence            3221111110 1111111223322  234555543 445555443221  123344443 34567777644444443321


Q ss_pred             --------------CeEEEEeCCCCceeeeeccCCC---CCeEEEEEccC-CCEEEEEec----------CCeEEEEeCC
Q 020798          179 --------------GLCRIWDASTGHCMKTLIDDEN---PPVSFVKFSPN-GKFILVGTL----------DNTLRLWNYS  230 (321)
Q Consensus       179 --------------g~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~-g~~l~~~~~----------d~~i~i~d~~  230 (321)
                                    ..++++|-.+.+..........   ..+..+.|..| +.++++|+.          .|.|.+|...
T Consensus       736 ~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~  815 (1096)
T KOG1897|consen  736 IESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE  815 (1096)
T ss_pred             cccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe
Confidence                          1356677666544333221111   12444557766 777777752          3678888876


Q ss_pred             CCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCC
Q 020798          231 TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDND  310 (321)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~  310 (321)
                      .++.++....+.-...+.+...  -+|+++|+  -...|++|+..+.+.++.-..|..++..+...-.++.++.|-  --
T Consensus       816 e~~~L~~v~e~~v~Gav~aL~~--fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD--lm  889 (1096)
T KOG1897|consen  816 ELNSLELVAETVVKGAVYALVE--FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD--LM  889 (1096)
T ss_pred             cCCceeeeeeeeeccceeehhh--hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee--cc
Confidence            6444444433322222222222  36777764  456899999988877777778888999998888899999874  23


Q ss_pred             ccEEE
Q 020798          311 RTVKI  315 (321)
Q Consensus       311 ~~i~i  315 (321)
                      ++|.+
T Consensus       890 ~Sitl  894 (1096)
T KOG1897|consen  890 RSITL  894 (1096)
T ss_pred             ceEEE
Confidence            44444

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.00019  Score=62.07  Aligned_cols=94  Identities=14%  Similarity=0.227  Sum_probs=75.1

Q ss_pred             cccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEE-EEEECCCCCEEEEeeCCCcEEEEecCCCEEEE
Q 020798           73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVF-CVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK  151 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  151 (321)
                      ...|..+.|+|.-..+|++..+|.+.+..+. .+.+..+.-|+..+. +++|.|||+.|+.|-.||+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3467889999999999999999999888877 444566665666666 99999999999999999999999999887665


Q ss_pred             EE-eCCCCCeeEEEEcc
Q 020798          152 VL-PAHSDPVTAVDFNR  167 (321)
Q Consensus       152 ~~-~~~~~~v~~~~~~~  167 (321)
                      .. .....+|..+-|.|
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            52 23345677777764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.78  E-value=0.0015  Score=59.81  Aligned_cols=143  Identities=17%  Similarity=0.238  Sum_probs=96.5

Q ss_pred             CCCEEEEE-eCCCcEEEEecCCcceeeeeecCccc-EEEEEECC-----CCCEEEEeeCCCcEEEEecCCCE--EEEE-E
Q 020798           84 DSRFLVSA-SDDKTIRLWDVPTATCLKTLIGHTNY-VFCVNFNP-----QSNMIVSGAFDETVRIWDVKTGK--CLKV-L  153 (321)
Q Consensus        84 ~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~~wd~~~~~--~~~~-~  153 (321)
                      +.++|+.. .....|+-.|++.++.+..+..+... |..++-..     .....+.|-.+..+..||.|-..  ++.. .
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            33444433 34577889999999998888777654 54443221     13455667778899999987532  2211 1


Q ss_pred             --eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          154 --PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       154 --~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                        -......++++-+.+| ++++|+.+|.||+||- .+...++.+..-+.+|..+..+.||+|+++.+ +..|.+++.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence              1223456667666555 7899999999999994 44445555656678899999999999987655 556777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.78  E-value=0.00091  Score=61.16  Aligned_cols=135  Identities=19%  Similarity=0.250  Sum_probs=87.1

Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC-------CCEEEEEecCCeEEEEeCCCC--cEEEEEeccC-Cce
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN-------GKFILVGTLDNTLRLWNYSTG--KILKTYTGHT-NSK  245 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~-~~~  245 (321)
                      .....++-.|+..|+.+..+......++..  +.|+       ..-.++|-.++.+..||.+-.  +++.. ..+. ...
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~~k~Y~~~  577 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-QSKQYSSK  577 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeec-cccccccC
Confidence            345778899999999998886655444433  3342       233567788889999998753  23321 1111 111


Q ss_pred             eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEE-EEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          246 YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV-QKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      .-.++... ....+||.|+.+|.||+||- .++.. ..+.+...||.+|..+.||+++++.+   +..+.|++.
T Consensus       578 ~~Fs~~aT-t~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc---~tyLlLi~t  646 (794)
T PF08553_consen  578 NNFSCFAT-TEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC---KTYLLLIDT  646 (794)
T ss_pred             CCceEEEe-cCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee---cceEEEEEE
Confidence            11222233 34557999999999999994 33322 34567789999999999999987765   234555553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.78  E-value=0.016  Score=52.30  Aligned_cols=147  Identities=11%  Similarity=0.182  Sum_probs=82.9

Q ss_pred             ccEEEEEECCCCCEEEEEe------CCC--cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCC---------
Q 020798           74 QGVSDLVFSSDSRFLVSAS------DDK--TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD---------  136 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------  136 (321)
                      ..+.+.+++|+|+.++...      .|.  .|.+++.... ......+  .....-.|+|+|+.+++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678899999999887654      244  4444454222 2111222  236677899998877665432         


Q ss_pred             ---CcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEE---EeCCCCcee----eeeccCCCCCeEEE
Q 020798          137 ---ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRI---WDASTGHCM----KTLIDDENPPVSFV  206 (321)
Q Consensus       137 ---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~---~d~~~~~~~----~~~~~~~~~~~~~~  206 (321)
                         +.+.+.++..++...   .....|..+.|+|||..++... ++.+.+   -....+...    ..+.......+..+
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence               233333443333222   2245799999999999887665 466666   333344311    11212222234678


Q ss_pred             EEccCCCEEEEEecCCeEEEEe
Q 020798          207 KFSPNGKFILVGTLDNTLRLWN  228 (321)
Q Consensus       207 ~~~~~g~~l~~~~~d~~i~i~d  228 (321)
                      .|..++.++ ++..++.-.+|.
T Consensus       503 ~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        503 DWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             eEecCCEEE-EEecCCCCceEE
Confidence            899998855 555444444444

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.74  E-value=0.013  Score=52.74  Aligned_cols=227  Identities=17%  Similarity=0.218  Sum_probs=115.2

Q ss_pred             CCCEEEEEeCCC------cEEEEecCCcceeeeee-cCcccEEEEEECCCCCEEEEeeCC-C-----cEEEEecCCCEEE
Q 020798           84 DSRFLVSASDDK------TIRLWDVPTATCLKTLI-GHTNYVFCVNFNPQSNMIVSGAFD-E-----TVRIWDVKTGKCL  150 (321)
Q Consensus        84 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~~wd~~~~~~~  150 (321)
                      .+..++.|+.++      .+..||..++....... .....-.+++.. ++..+++||.+ |     .+..||.+.++=.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            455667777663      57788887764322111 011112233333 34677888888 2     4667787766522


Q ss_pred             E--EEeCCCCCeeEEEEccCCCEEEEEeCCCe-----EEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCC-
Q 020798          151 K--VLPAHSDPVTAVDFNRDGTMIVTSSYDGL-----CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN-  222 (321)
Q Consensus       151 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~-  222 (321)
                      .  .+........ ++ .-+|...++|+.||.     +-.||..+.+-....... ...-......-+|...++|+.++ 
T Consensus       363 ~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-~~r~~~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  363 PVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-TRRSGHGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             ccCCccCccccce-eE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCC-cceeeeEEEEECCEEEEEcCcCCC
Confidence            1  1111111111 11 125777888888864     566777654321111000 11111122233677778887553 


Q ss_pred             -----eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCe-----EEEEEcccceE--EEEecCCCCCe
Q 020798          223 -----TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSC-----VYLWELQSRKV--VQKLEGHTDPV  290 (321)
Q Consensus       223 -----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~--~~~~~~h~~~v  290 (321)
                           ++..||..+.+............ ....  ..-++...+.|+.|+.     |..||..+.+-  +..+......+
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~--a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~  516 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRS-GFGV--AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV  516 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCcccccc-cceE--EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence                 57888887765433222111111 1111  1246888888887763     67788766543  22233233333


Q ss_pred             EEEEecCCCceEEEEeecCC---ccEEEcccc
Q 020798          291 ISVASHPTENIIASGALDND---RTVKIWTQE  319 (321)
Q Consensus       291 ~~~~~~p~~~~l~s~~~d~~---~~i~iw~~~  319 (321)
                      -.++.  ++...|.|+.|+.   ++|..||.+
T Consensus       517 g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~  546 (571)
T KOG4441|consen  517 GVVVL--GGKLYAVGGFDGNNNLNTVECYDPE  546 (571)
T ss_pred             cEEEE--CCEEEEEecccCccccceeEEcCCC
Confidence            33333  4677788876644   356667654

>smart00320 WD40 WD40 repeats

Probab=97.70  E-value=0.00022  Score=37.84  Aligned_cols=38  Identities=42%  Similarity=0.811  Sum_probs=33.0

Q ss_pred             EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEe
Q 020798          148 KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD  185 (321)
Q Consensus       148 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  185 (321)
                      ++...+..|...+.++.|++.+..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44556677888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.68  E-value=0.018  Score=45.86  Aligned_cols=193  Identities=16%  Similarity=0.233  Sum_probs=112.2

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      +...|-...|+++.|+|+.+.|.+..+...-.++--.+.+....   .|+   .+ -.....|.+..++++.++--.++.
T Consensus        79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt---iPL---~g-~~DpE~Ieyig~n~fvi~dER~~~  151 (316)
T COG3204          79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT---IPL---TG-FSDPETIEYIGGNQFVIVDERDRA  151 (316)
T ss_pred             cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE---ecc---cc-cCChhHeEEecCCEEEEEehhcce
Confidence            33556667799999999999887776666555542211111111   111   11 122345778888888888788888


Q ss_pred             EEEEecCCcceeeee---------ecC-cccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE-EE--EEEeCC-------
Q 020798           97 IRLWDVPTATCLKTL---------IGH-TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK-CL--KVLPAH-------  156 (321)
Q Consensus        97 i~iwd~~~~~~~~~~---------~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~--~~~~~~-------  156 (321)
                      +.++.+.........         ..+ +...-.++|+|....|+.+-...-+.+|...... ..  .....+       
T Consensus       152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f  231 (316)
T COG3204         152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF  231 (316)
T ss_pred             EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence            888877655322111         122 4557789999999888888877777777654322 10  000111       


Q ss_pred             CCCeeEEEEccC-CCEEEEEeCCCeEEEEeCCCCceeeee--cc------CCCCCeEEEEEccCCCEEEE
Q 020798          157 SDPVTAVDFNRD-GTMIVTSSYDGLCRIWDASTGHCMKTL--ID------DENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       157 ~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~------~~~~~~~~~~~~~~g~~l~~  217 (321)
                      -..+.++.|++. +.+++.+.+++.+.-.|.... .+..+  ..      ...+....++..++|...++
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             eeccccceecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence            134677888875 456666777777777776543 22221  11      11223455777777765444

>PHA02713 hypothetical protein; Provisional

Probab=97.67  E-value=0.014  Score=52.67  Aligned_cols=212  Identities=8%  Similarity=0.120  Sum_probs=104.6

Q ss_pred             cEEEEecCCcceee--eeecCcccEEEEEECCCCCEEEEeeCC------CcEEEEecCCCEEEE--EEeCCCCCeeEEEE
Q 020798           96 TIRLWDVPTATCLK--TLIGHTNYVFCVNFNPQSNMIVSGAFD------ETVRIWDVKTGKCLK--VLPAHSDPVTAVDF  165 (321)
Q Consensus        96 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~--~~~~~~~~v~~~~~  165 (321)
                      .+..||..+.+...  .+...... .+++. -++..++.||.+      ..+..||..+..-..  .++...... +++ 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-  348 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-  348 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-
Confidence            46778877665321  11111111 12222 245566677643      246778877664221  111111111 122 


Q ss_pred             ccCCCEEEEEeCCC-----eEEEEeCCCCceee--eeccCCCCCeEEEEEccCCCEEEEEecC-----------------
Q 020798          166 NRDGTMIVTSSYDG-----LCRIWDASTGHCMK--TLIDDENPPVSFVKFSPNGKFILVGTLD-----------------  221 (321)
Q Consensus       166 ~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~l~~~~~d-----------------  221 (321)
                      .-++...+.|+.++     .+..||..+..-..  .+... ......+  .-+|+..+.|+.+                 
T Consensus       349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc-cccccEE--EECCEEEEEeCCCccccccccccccccccc
Confidence            23567777887654     47788887653221  11111 0111112  2367777777654                 


Q ss_pred             ------CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC------CeEEEEEccc-c--eEEEEecCC
Q 020798          222 ------NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED------SCVYLWELQS-R--KVVQKLEGH  286 (321)
Q Consensus       222 ------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~-~--~~~~~~~~h  286 (321)
                            ..+..||..+.+....-.-..... ..  .....++...+.|+.+      ..+..||..+ .  ..+..+...
T Consensus       426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~--~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~  502 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RP--GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR  502 (557)
T ss_pred             ccccccceEEEECCCCCeEeecCCCCcccc-cC--cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence                  247778877654332211111110 00  1112367777777654      2467888876 3  333444433


Q ss_pred             CCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          287 TDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       287 ~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ......+++  ++.+.+.||.|+...+..||.+
T Consensus       503 r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        503 LSALHTILH--DNTIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             cccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence            333333333  6889999997765577777765

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.62  E-value=0.0047  Score=41.64  Aligned_cols=100  Identities=16%  Similarity=0.180  Sum_probs=62.0

Q ss_pred             EEEEEECC---CC-CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           26 ISSVKFSH---DG-RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        26 v~~~~~s~---~g-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      |+++++.+   || +.|++|+.|..|++|+-..          .+..++. ...|..+.-... ..++.+..+|+|-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----------~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----------IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----------EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEe
Confidence            56666654   43 5899999999999995432          2333333 345677776665 5688899999999997


Q ss_pred             cCCcceeeeeecCcccEEEEEEC-C--CC-CEEEEeeCCCcEE
Q 020798          102 VPTATCLKTLIGHTNYVFCVNFN-P--QS-NMIVSGAFDETVR  140 (321)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~~~~~~-~--~~-~~l~~~~~dg~i~  140 (321)
                      -...  +..++... .+.++.+. .  +| ..|++|-.+|.|-
T Consensus        70 ~~~R--lWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   70 RSQR--LWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             Ccce--eeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5322  22222222 24444433 2  33 3588888888763

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.62  E-value=0.021  Score=47.77  Aligned_cols=131  Identities=15%  Similarity=0.154  Sum_probs=77.7

Q ss_pred             CcEEEEecCCc----ceeeee--ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE-EEEEEe-CCCCCeeEEEEc
Q 020798           95 KTIRLWDVPTA----TCLKTL--IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK-CLKVLP-AHSDPVTAVDFN  166 (321)
Q Consensus        95 ~~i~iwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~-~~~~~v~~~~~~  166 (321)
                      |.|.++++...    ..++.+  ....++|.+++.-  +..|+++. .+.|++|++...+ ....-. .....+.++.. 
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~-  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV-  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence            88999998873    112211  2346778887766  33444443 4789999998776 333221 12224555544 


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC-Cceeeeec-cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 020798          167 RDGTMIVTSSYDGLCRIWDAST-GHCMKTLI-DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       167 ~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~  230 (321)
                       .++++++|.....+.++..+. ...+..+. ......+..+.+-++++.++++..+|.+.++...
T Consensus       138 -~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  138 -FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             -cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence             466888898877777764332 22222222 2223346777777666788999999999999865

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.58  E-value=0.039  Score=47.17  Aligned_cols=81  Identities=11%  Similarity=0.248  Sum_probs=52.8

Q ss_pred             eEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecC---------------CeEE-EEeCCC
Q 020798          203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN---------------GKYI-VSGSED  266 (321)
Q Consensus       203 ~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l-~~~~~d  266 (321)
                      +..+..+|.+++.++...-|.|.++|+.++..++.+++...............+               ..+| +-+-.-
T Consensus       310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR  389 (415)
T PF14655_consen  310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR  389 (415)
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence            567889999998888877899999999999888877765433211100000000               1222 234567


Q ss_pred             CeEEEEEcccceEEEEe
Q 020798          267 SCVYLWELQSRKVVQKL  283 (321)
Q Consensus       267 g~i~vwd~~~~~~~~~~  283 (321)
                      |.|.||.++.+..+..+
T Consensus       390 g~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  390 GILEVWSMRQGPRVAAF  406 (415)
T ss_pred             CeEEEEecCCCCEEEEE
Confidence            88899999877665544

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.00087  Score=61.75  Aligned_cols=105  Identities=20%  Similarity=0.296  Sum_probs=76.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeE
Q 020798          168 DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYC  247 (321)
Q Consensus       168 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  247 (321)
                      .+..++.|+..|.+-..|.+..-.....-.....++++++|+.+|+.++.|-.+|.|.+||+..+++++.+..+..+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            45567888888888888876532211222234578999999999999999999999999999999999988877766555


Q ss_pred             EEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          248 ISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       248 ~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      +...-...++..++++..-|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            444433345556777777775  5654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.50  E-value=0.013  Score=39.63  Aligned_cols=91  Identities=16%  Similarity=0.238  Sum_probs=58.7

Q ss_pred             CEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEE
Q 020798          128 NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVK  207 (321)
Q Consensus       128 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  207 (321)
                      +.|++|+.|..|++|+-  .+.+..+.. .+.++++.-... ..|+.+..+|+|-+|+-...  .-+....+ .++....
T Consensus        16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lWRiKSK~-~~~~~~~   88 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LWRIKSKN-QVTSMAF   88 (111)
T ss_pred             ceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce--eeeeccCC-CeEEEEE
Confidence            57999999999999973  455666654 456777776655 56889999999999975321  22222222 2333333


Q ss_pred             EccCC---CEEEEEecCCeEE
Q 020798          208 FSPNG---KFILVGTLDNTLR  225 (321)
Q Consensus       208 ~~~~g---~~l~~~~~d~~i~  225 (321)
                      ++.++   ..|++|-.+|.|-
T Consensus        89 ~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   89 YDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EcCCCCCceEEEEEecCCeEE
Confidence            44433   3577888888764

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.43  E-value=0.1  Score=48.46  Aligned_cols=284  Identities=14%  Similarity=0.141  Sum_probs=133.1

Q ss_pred             cccEEEEEECCCC------CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           23 LRAISSVKFSHDG------RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        23 ~~~v~~~~~s~~g------~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      ...|.|+.++|-|      +.++.|..+..+.+--...-.....   ......+.-.+.|--..+-.|..+|.++..||.
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~---~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~  606 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILIT---HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGA  606 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceee---eeccCCCccchheeeEEeeccceEEEEEcCCce
Confidence            5689999999753      2688887766655432211000000   000011111234444455556789999999999


Q ss_pred             EEEEecCCcceee--e---eecCcccEEEEEECCCCC-EEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC--
Q 020798           97 IRLWDVPTATCLK--T---LIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD--  168 (321)
Q Consensus        97 i~iwd~~~~~~~~--~---~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~--  168 (321)
                      +..|.+...+...  .   ..| ..++.--.|+..++ .+++++ |.-.-+|-- +++....--.-+.--.-+.|+.+  
T Consensus       607 l~~fv~d~~tg~lsd~Kk~~lG-t~P~~Lr~f~sk~~t~vfa~s-drP~viY~~-n~kLv~spls~kev~~~c~f~s~a~  683 (1096)
T KOG1897|consen  607 LLYFVLDINTGQLSDRKKVTLG-TQPISLRTFSSKSRTAVFALS-DRPTVIYSS-NGKLVYSPLSLKEVNHMCPFNSDAY  683 (1096)
T ss_pred             EEEEEEEcccceEccccccccC-CCCcEEEEEeeCCceEEEEeC-CCCEEEEec-CCcEEEeccchHHhhhhcccccccC
Confidence            9887654433211  1   112 22333334444433 344444 444444432 23332211000000011222222  


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce--eeeeccCCCCCeEEEEEccCCCEEEEEec-----------C---CeEEEEeCCCC
Q 020798          169 GTMIVTSSYDGLCRIWDASTGHC--MKTLIDDENPPVSFVKFSPNGKFILVGTL-----------D---NTLRLWNYSTG  232 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-----------d---~~i~i~d~~~~  232 (321)
                      ...++.+.. +.+++.-+..-+.  ++++  ........+++.+....+.+.+.           .   ..++++|-.+-
T Consensus       684 ~d~l~~~~~-~~l~i~tid~iqkl~irtv--pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf  760 (1096)
T KOG1897|consen  684 PDSLASANG-GALTIGTIDEIQKLHIRTV--PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF  760 (1096)
T ss_pred             CceEEEecC-CceEEEEecchhhcceeee--cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCce
Confidence            224444443 4455554432211  1221  12223344555553333333221           1   13677776666


Q ss_pred             cEEEEEeccC--CceeEEEeEEEecCCeEEEEeC----------CCCeEEEEEcccceEEEEecCC--CCCeEEEEecCC
Q 020798          233 KILKTYTGHT--NSKYCISSTFSVTNGKYIVSGS----------EDSCVYLWELQSRKVVQKLEGH--TDPVISVASHPT  298 (321)
Q Consensus       233 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~p~  298 (321)
                      +.+...+...  ....++++.+..+.+.+++.|+          ..|.|.||.+...+.+..+..+  .+.+.++.- .+
T Consensus       761 ~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fn  839 (1096)
T KOG1897|consen  761 EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FN  839 (1096)
T ss_pred             eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hC
Confidence            5554432211  1122333344444477777775          3588999998774433333322  456666643 35


Q ss_pred             CceEEEEeecCCccEEEccccc
Q 020798          299 ENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       299 ~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      |++||.-+    ..|+||+..+
T Consensus       840 gkllA~In----~~vrLye~t~  857 (1096)
T KOG1897|consen  840 GKLLAGIN----QSVRLYEWTT  857 (1096)
T ss_pred             CeEEEecC----cEEEEEEccc
Confidence            77877643    4677776543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.41  E-value=0.087  Score=47.18  Aligned_cols=162  Identities=18%  Similarity=0.322  Sum_probs=94.1

Q ss_pred             EEECCCCCEEEEeeC-----CC-----------cEEEEecCCCEEEEEEeCCCCC---------eeEEEEccCCC---EE
Q 020798          121 VNFNPQSNMIVSGAF-----DE-----------TVRIWDVKTGKCLKVLPAHSDP---------VTAVDFNRDGT---MI  172 (321)
Q Consensus       121 ~~~~~~~~~l~~~~~-----dg-----------~i~~wd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~---~l  172 (321)
                      +++.|+.+.++.+..     .+           .|.-.|+++|+..-.++.....         ..-+.+..+|+   .+
T Consensus       239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v  318 (527)
T TIGR03075       239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL  318 (527)
T ss_pred             eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence            466676666655431     12           4666688888876555432211         12233334665   67


Q ss_pred             EEEeCCCeEEEEeCCCCceeee--------ec---c-CCCCCe----------------------------EEEEEccCC
Q 020798          173 VTSSYDGLCRIWDASTGHCMKT--------LI---D-DENPPV----------------------------SFVKFSPNG  212 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~--------~~---~-~~~~~~----------------------------~~~~~~~~g  212 (321)
                      +.+..+|.+.+.|.++++.+..        ..   . ....++                            ..++++|+.
T Consensus       319 ~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~  398 (527)
T TIGR03075       319 AHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKT  398 (527)
T ss_pred             EEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCC
Confidence            7889999999999998876421        10   0 000000                            114566655


Q ss_pred             CEEEEEecC---------------------------------CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeE
Q 020798          213 KFILVGTLD---------------------------------NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY  259 (321)
Q Consensus       213 ~~l~~~~~d---------------------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (321)
                      .++++...+                                 +.|.-+|+.+++.+-..+........   ... ..+.+
T Consensus       399 g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~---~l~-t~g~l  474 (527)
T TIGR03075       399 GLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGG---VLA-TAGDL  474 (527)
T ss_pred             CEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCc---ceE-ECCcE
Confidence            555443322                                 45777888888776655432211111   111 24556


Q ss_pred             EEEeCCCCeEEEEEcccceEEEEecCC
Q 020798          260 IVSGSEDSCVYLWELQSRKVVQKLEGH  286 (321)
Q Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~~~h  286 (321)
                      ++.++.+|.++.+|.++++.+.+.+-.
T Consensus       475 vf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       475 VFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             EEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            777888999999999999998877643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.009  Score=51.21  Aligned_cols=143  Identities=20%  Similarity=0.305  Sum_probs=95.2

Q ss_pred             CCCCEEE-EEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCC-------EEEEeeCCCcEEEEecCCCE--EEEE
Q 020798           83 SDSRFLV-SASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-------MIVSGAFDETVRIWDVKTGK--CLKV  152 (321)
Q Consensus        83 ~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~~wd~~~~~--~~~~  152 (321)
                      .+.++|+ .+.....++-.|++.++.+....-+.. |.-+.+.|+..       .-+.|-.+..|.-||.+-..  .+..
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            3444444 455556788889999998888776666 66666777642       22345667888899987322  1222


Q ss_pred             EeCC----CCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 020798          153 LPAH----SDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN  228 (321)
Q Consensus       153 ~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d  228 (321)
                      .+.|    .....|++-..+| ++++|+.+|.|++||- .+...++.+...+.+|..+..+.+|++|++.+ +..+.+.+
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID  498 (644)
T ss_pred             eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence            2222    2234445444444 7899999999999996 45445556666778899999999999987544 56677776


Q ss_pred             C
Q 020798          229 Y  229 (321)
Q Consensus       229 ~  229 (321)
                      +
T Consensus       499 t  499 (644)
T KOG2395|consen  499 T  499 (644)
T ss_pred             E
Confidence            5

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.35  E-value=0.052  Score=43.34  Aligned_cols=192  Identities=13%  Similarity=0.240  Sum_probs=117.0

Q ss_pred             ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCC-CCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q 020798          112 IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHS-DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH  190 (321)
Q Consensus       112 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  190 (321)
                      .+-...+.++.|+|+.+.|++......-.++=...|+.+..++... .....+++..++.+.++--.++.+.++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            4445569999999999998887777766666556788888776422 334568888888777777788888888765432


Q ss_pred             eeeee---------ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc-EE--EEEeccCCc----eeEEEe-EEE
Q 020798          191 CMKTL---------IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK-IL--KTYTGHTNS----KYCISS-TFS  253 (321)
Q Consensus       191 ~~~~~---------~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~-~~--~~~~~~~~~----~~~~~~-~~~  253 (321)
                      .....         ....+.....++|+|....|+.+-+-+-+.||.+.... .+  .....+...    ..-++. .+.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            11111         11225567889999999999999888888888765322 11  111111110    011111 233


Q ss_pred             ecCCeEEEEeCCCCeEEEEEcccceEEEEec------CCCC---CeEEEEecCCCceEEE
Q 020798          254 VTNGKYIVSGSEDSCVYLWELQSRKVVQKLE------GHTD---PVISVASHPTENIIAS  304 (321)
Q Consensus       254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~h~~---~v~~~~~~p~~~~l~s  304 (321)
                      ...+..|+-+.+++.+.-.|... ..+..+.      +...   .--+++..++|.+.++
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence            34567777777888877777643 3333322      1111   2346777777765554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.30  E-value=0.068  Score=43.50  Aligned_cols=220  Identities=14%  Similarity=0.186  Sum_probs=118.0

Q ss_pred             CCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE----------
Q 020798           83 SDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV----------  152 (321)
Q Consensus        83 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~----------  152 (321)
                      ..++.|+.|+.+| +.+++.........+. +...|..+...|+-+.+++-+ |+.++++++..-.....          
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3567899999999 8999983322222222 233388999999877766654 49999999864332221          


Q ss_pred             ----EeCCCCCeeEEE--EccCCCEEEEEeCCCeEEEEeCCCC-----ceeeeeccCCCCCeEEEEEccCCCEEEEEecC
Q 020798          153 ----LPAHSDPVTAVD--FNRDGTMIVTSSYDGLCRIWDASTG-----HCMKTLIDDENPPVSFVKFSPNGKFILVGTLD  221 (321)
Q Consensus       153 ----~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d  221 (321)
                          .......+..++  -...+...++......+.+|.....     +..+++...  ..+..+.|.  ++.++.|..+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEEeCC
Confidence                001122333333  1123334444444458888776542     233444322  446677777  5567776644


Q ss_pred             CeEEEEeCCCCcEEEEEeccCCc---------eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEE--EecCCCCCe
Q 020798          222 NTLRLWNYSTGKILKTYTGHTNS---------KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ--KLEGHTDPV  290 (321)
Q Consensus       222 ~~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~h~~~v  290 (321)
                       ...+.|+.++.....+......         ...+. .+..+++++|++-  |..-.+.|. .|+...  .+.-.. ..
T Consensus       158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~-~p  231 (275)
T PF00780_consen  158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG-IFQLSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSS-AP  231 (275)
T ss_pred             -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE-EEEeCCceEEEEe--cceEEEEcC-CCCcCcccEEEcCC-ch
Confidence             4888898877654443211111         11122 2223456777653  233333344 343222  333322 44


Q ss_pred             EEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          291 ISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       291 ~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .++++.  ..+|+.-+   ++.|.||+++.
T Consensus       232 ~~~~~~--~pyli~~~---~~~iEV~~~~~  256 (275)
T PF00780_consen  232 QSVAYS--SPYLIAFS---SNSIEVRSLET  256 (275)
T ss_pred             hEEEEE--CCEEEEEC---CCEEEEEECcC
Confidence            666664  44666654   24699998864

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=97.28  E-value=0.031  Score=50.43  Aligned_cols=185  Identities=8%  Similarity=0.042  Sum_probs=91.3

Q ss_pred             CCCEEEEEeCC------CcEEEEecCCcceee--eeecCcccEEEEEECCCCCEEEEeeCCC-----cEEEEecCCCEEE
Q 020798           84 DSRFLVSASDD------KTIRLWDVPTATCLK--TLIGHTNYVFCVNFNPQSNMIVSGAFDE-----TVRIWDVKTGKCL  150 (321)
Q Consensus        84 ~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~  150 (321)
                      ++..++.||.+      ..+..||..++....  .+....... +++ .-++...+.||.++     .+..||..+.+-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            56666777753      347788877664321  111111111 111 22456667777654     3778888765422


Q ss_pred             E--EEeCCCCCeeEEEEccCCCEEEEEeCCC-----------------------eEEEEeCCCCceeeeeccCCCCCeEE
Q 020798          151 K--VLPAHSDPVTAVDFNRDGTMIVTSSYDG-----------------------LCRIWDASTGHCMKTLIDDENPPVSF  205 (321)
Q Consensus       151 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~~~d~~~~~~~~~~~~~~~~~~~~  205 (321)
                      .  .++........+.  -++...+.|+.++                       .+..||..+.+-........ +....
T Consensus       381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~~~  457 (557)
T PHA02713        381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTIRP  457 (557)
T ss_pred             ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccccC
Confidence            1  1211111111222  2567777777542                       46678876653211100000 11111


Q ss_pred             EEEccCCCEEEEEecC------CeEEEEeCCC-CcEE--EEEeccCCceeEEEeEEEecCCeEEEEeCCCC--eEEEEEc
Q 020798          206 VKFSPNGKFILVGTLD------NTLRLWNYST-GKIL--KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS--CVYLWEL  274 (321)
Q Consensus       206 ~~~~~~g~~l~~~~~d------~~i~i~d~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~vwd~  274 (321)
                      ....-+|+..+.|+.+      ..+..||..+ .+..  ..+...   .....  ...-++...++|+.+|  .+..||.
T Consensus       458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~---r~~~~--~~~~~~~iyv~Gg~~~~~~~e~yd~  532 (557)
T PHA02713        458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR---LSALH--TILHDNTIMMLHCYESYMLQDTFNV  532 (557)
T ss_pred             cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc---cccce--eEEECCEEEEEeeecceeehhhcCc
Confidence            1122356666777654      2467899876 4432  222211   11111  1123788889999888  6777777


Q ss_pred             ccce
Q 020798          275 QSRK  278 (321)
Q Consensus       275 ~~~~  278 (321)
                      .+.+
T Consensus       533 ~~~~  536 (557)
T PHA02713        533 YTYE  536 (557)
T ss_pred             cccc
Confidence            6654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.28  E-value=0.084  Score=44.14  Aligned_cols=174  Identities=19%  Similarity=0.293  Sum_probs=97.0

Q ss_pred             cEEEEecCCcceeeeeec-CcccEEEEE---ECCC----CCEEEEeeC----------CCcEEEEecCCC----EEEEEE
Q 020798           96 TIRLWDVPTATCLKTLIG-HTNYVFCVN---FNPQ----SNMIVSGAF----------DETVRIWDVKTG----KCLKVL  153 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~~-~~~~v~~~~---~~~~----~~~l~~~~~----------dg~i~~wd~~~~----~~~~~~  153 (321)
                      .|++.|..+.+.+..+.- ..+.+.+++   +..+    ..+|+.|..          .|.|.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            467777666655544321 122333333   3322    345665532          288999999874    122211


Q ss_pred             --eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCc-eeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 020798          154 --PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH-CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       154 --~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~  230 (321)
                        ....++|++++-- ++ .++++ .++.+.+|++...+ ............+.++..  .++++++|.....+.++..+
T Consensus        83 ~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEE
T ss_pred             EEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEE
Confidence              2346788888765 34 44433 34789999987766 433332222334444443  46699999988888877544


Q ss_pred             C-CcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          231 T-GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      . ...+..+.....+.+..+..+.. +++.++++..+|.+.++...
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-
T ss_pred             ccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEEC
Confidence            3 33244443333444444444442 34588889999999999886

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.25  E-value=0.12  Score=46.77  Aligned_cols=229  Identities=17%  Similarity=0.194  Sum_probs=110.6

Q ss_pred             CCCCCEEEEecCCc------eEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC-C-----cEEE
Q 020798           32 SHDGRLLASSSADK------TLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD-K-----TIRL   99 (321)
Q Consensus        32 s~~g~~l~~~~~d~------~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d-~-----~i~i   99 (321)
                      +..+.+++.|+.++      .+..||......      .....+. ....-.+++.. ++...++|+.| |     ++..
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w------~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~  353 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEW------SSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVER  353 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcE------eecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEE
Confidence            33456777887774      455665543211      1111111 11122233333 45677888888 3     5778


Q ss_pred             EecCCcceee--eeecCcccEEEEEECCCCCEEEEeeCCCc-----EEEEecCCCEEEEEEeCCCCCeeEEEE-ccCCCE
Q 020798          100 WDVPTATCLK--TLIGHTNYVFCVNFNPQSNMIVSGAFDET-----VRIWDVKTGKCLKVLPAHSDPVTAVDF-NRDGTM  171 (321)
Q Consensus       100 wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~  171 (321)
                      ||..+++...  .+..........  .-+|...+.||.||.     +-.||..+.+-... .....+...... .-+|.+
T Consensus       354 YD~~~~~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~i  430 (571)
T KOG4441|consen  354 YDPRTNQWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKL  430 (571)
T ss_pred             ecCCCCceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEE
Confidence            8887766322  111111111111  124667788888864     55677655431111 111111122221 225677


Q ss_pred             EEEEeCCC------eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEeCCCCcEEEE--E
Q 020798          172 IVTSSYDG------LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN-----TLRLWNYSTGKILKT--Y  238 (321)
Q Consensus       172 l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~-----~i~i~d~~~~~~~~~--~  238 (321)
                      .++|+.++      ++..||..+..-...........-..+ -.-++...++|+.|+     ++..||..+.+....  .
T Consensus       431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m  509 (571)
T KOG4441|consen  431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM  509 (571)
T ss_pred             EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence            77887554      466788776543221111111111112 223677778888776     377788877654332  1


Q ss_pred             eccCCceeEEEeEEEecCCeEEEEeCCCC-----eEEEEEcccc
Q 020798          239 TGHTNSKYCISSTFSVTNGKYIVSGSEDS-----CVYLWELQSR  277 (321)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~  277 (321)
                      ......   ..  ....++...++|+.||     +|..||..+.
T Consensus       510 ~~~rs~---~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  510 TSPRSA---VG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             cccccc---cc--EEEECCEEEEEecccCccccceeEEcCCCCC
Confidence            111111   11  1123678888888776     3555655443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.20  E-value=0.12  Score=44.64  Aligned_cols=194  Identities=19%  Similarity=0.204  Sum_probs=97.3

Q ss_pred             EEECCCCCEEEEecCC-----------ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcE
Q 020798           29 VKFSHDGRLLASSSAD-----------KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTI   97 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~d-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i   97 (321)
                      ++.+|.|..+|....+           ..|.+|+..+         .++..+.-..+.|.++.|+.+.+ |+.-..||.+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG---------~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v  103 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG---------KLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTV  103 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC---------CEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEE
Confidence            4556666666665443           1366664432         22222221226789999988655 5566799999


Q ss_pred             EEEecCCcc------eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE-EEEEE---eC-----CCC-Cee
Q 020798           98 RLWDVPTAT------CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK-CLKVL---PA-----HSD-PVT  161 (321)
Q Consensus        98 ~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~---~~-----~~~-~v~  161 (321)
                      ++||+....      ......-....+....+..+|-.+++  .++.+.+..--... ....+   +.     +.. ...
T Consensus       104 ~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~  181 (410)
T PF04841_consen  104 RVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWT  181 (410)
T ss_pred             EEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccc
Confidence            999986333      01111111111222223334422333  33444433221111 11111   11     000 000


Q ss_pred             -EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEe
Q 020798          162 -AVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       162 -~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~  239 (321)
                       ...++.+....+....++.+.+.+....+.   +  ....++..++.||+|++++.-..+|.+.+....-.+.+..+.
T Consensus       182 ~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  182 VIPLLSSDRVVEILLANGETIYIIDENSFKQ---I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             cceEeecCcceEEEEecCCEEEEEEcccccc---c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence             122334444445555555665444322111   1  123468899999999999999999999998765555554443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.0062  Score=52.17  Aligned_cols=137  Identities=22%  Similarity=0.269  Sum_probs=86.8

Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCE-------EEEEecCCeEEEEeCCCCc--EEEE
Q 020798          168 DGTMIV-TSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKF-------ILVGTLDNTLRLWNYSTGK--ILKT  237 (321)
Q Consensus       168 ~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------l~~~~~d~~i~i~d~~~~~--~~~~  237 (321)
                      +.++++ .+.....++-.|+..|+.+..+.....  |+.+.+.|+.+.       -++|-.|+.|--||.+-..  .+..
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            344444 444556677889999998887754433  555666665432       2456678889999987432  2222


Q ss_pred             EeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          238 YTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      -+.++-....-..++......++++|+.+|-||+||--..+--..+.+...+|..+..+.+|.+++..+
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             eeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence            223221110011122223456899999999999999733333345778889999999999999887664

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.11  E-value=0.096  Score=41.67  Aligned_cols=199  Identities=16%  Similarity=0.226  Sum_probs=107.6

Q ss_pred             EEEECCCCC-EEEEEeCCCc-EEEEecCCcceeee--------eecCcccEEEEEECCCCCEEEEeeCC-----CcEEEE
Q 020798           78 DLVFSSDSR-FLVSASDDKT-IRLWDVPTATCLKT--------LIGHTNYVFCVNFNPQSNMIVSGAFD-----ETVRIW  142 (321)
Q Consensus        78 ~~~~~~~~~-~l~~~~~d~~-i~iwd~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w  142 (321)
                      .|+++|..+ -++.+-.=|+ ..++|....+....        +.+|.      .|+|||.+|+..-.|     |.|-+|
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvY  145 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEE
Confidence            467777543 3444544444 45677766654333        33443      589999998875433     789999


Q ss_pred             ecCCC-EEEEEEeCCCCCeeEEEEccCCCEEEEEeCC------------------CeEEEEeCCCCceeeeecc---CCC
Q 020798          143 DVKTG-KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD------------------GLCRIWDASTGHCMKTLID---DEN  200 (321)
Q Consensus       143 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------g~i~~~d~~~~~~~~~~~~---~~~  200 (321)
                      |.+.+ +.+-.++.|.-....+.+.+||+.++.+...                  -.+.+.|..++..+.+...   ...
T Consensus       146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~  225 (366)
T COG3490         146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ  225 (366)
T ss_pred             ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence            98744 3445667777667889999999988766431                  1233444444443332211   122


Q ss_pred             CCeEEEEEccCCCEEEEEecCCe-----EEEEeCCCCcEEEEEeccCC-----ceeEEEeEEEecCCeEEEEeCCCCeEE
Q 020798          201 PPVSFVKFSPNGKFILVGTLDNT-----LRLWNYSTGKILKTYTGHTN-----SKYCISSTFSVTNGKYIVSGSEDSCVY  270 (321)
Q Consensus       201 ~~~~~~~~~~~g~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg~i~  270 (321)
                      -.+..++..++|..++.+-..|.     -.+=....++.+.-+.....     ..+.-+......++...++.=.-+...
T Consensus       226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v  305 (366)
T COG3490         226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV  305 (366)
T ss_pred             cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence            34677788888876655433221     11111223333332221110     011111122223444444444455677


Q ss_pred             EEEcccceEEEE
Q 020798          271 LWELQSRKVVQK  282 (321)
Q Consensus       271 vwd~~~~~~~~~  282 (321)
                      +||..++.++..
T Consensus       306 i~da~tG~vv~~  317 (366)
T COG3490         306 IWDAATGAVVSE  317 (366)
T ss_pred             EEEcCCCcEEec
Confidence            999999987653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.06  E-value=0.27  Score=45.92  Aligned_cols=198  Identities=14%  Similarity=0.148  Sum_probs=113.9

Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeeecCccc--------EEEEEEC----------------CCCCEEEEeeCCCcEE
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNY--------VFCVNFN----------------PQSNMIVSGAFDETVR  140 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~~~~~dg~i~  140 (321)
                      +..++.++.++.|.-.|..+++.+-.+......        ...+.+.                .++..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456777788888888898888766554321110        1112221                1345788888999999


Q ss_pred             EEecCCCEEEEEEeCCCCCe---------e----EEEEcc--CCCEEEEEeC----------CCeEEEEeCCCCceeeee
Q 020798          141 IWDVKTGKCLKVLPAHSDPV---------T----AVDFNR--DGTMIVTSSY----------DGLCRIWDASTGHCMKTL  195 (321)
Q Consensus       141 ~wd~~~~~~~~~~~~~~~~v---------~----~~~~~~--~~~~l~~~~~----------dg~i~~~d~~~~~~~~~~  195 (321)
                      -.|.++|+....+... ..+         .    .+.-.|  .+..+++++.          +|.|+-+|.++++.+-..
T Consensus       274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            9999999877654321 111         0    011112  1345566542          688999999999876544


Q ss_pred             ccCC----------------CCCe-EEEEEccCCCEEEEEe------------------cCCeEEEEeCCCCcEEEEEec
Q 020798          196 IDDE----------------NPPV-SFVKFSPNGKFILVGT------------------LDNTLRLWNYSTGKILKTYTG  240 (321)
Q Consensus       196 ~~~~----------------~~~~-~~~~~~~~g~~l~~~~------------------~d~~i~i~d~~~~~~~~~~~~  240 (321)
                      ....                ...+ ...++++....+..+.                  ..+.|.-.|.++++..-.++.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            2110                0001 2244555444443322                  124577778888888776654


Q ss_pred             cCCce-------eEEEeEEEecCCe---EEEEeCCCCeEEEEEcccceEEEEe
Q 020798          241 HTNSK-------YCISSTFSVTNGK---YIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       241 ~~~~~-------~~~~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      .....       ..+.......+|+   .++.++.+|.+.++|.++++.+...
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            11110       0111111112453   7889999999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.04  E-value=0.14  Score=42.27  Aligned_cols=200  Identities=15%  Similarity=0.130  Sum_probs=108.7

Q ss_pred             EEECCCCCEE-EEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcce
Q 020798           29 VKFSHDGRLL-ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC  107 (321)
Q Consensus        29 ~~~s~~g~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  107 (321)
                      ..|.|+...| .+--..+.+.-|+....         ....+.. ...+.++..-..+..|+++ .. -+.+++.+.+..
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g---------~~~~~~~-p~~~~~~~~~d~~g~Lv~~-~~-g~~~~~~~~~~~   97 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETG---------KKRVFPS-PGGFSSGALIDAGGRLIAC-EH-GVRLLDPDTGGK   97 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcC---------ceEEEEC-CCCcccceeecCCCeEEEE-cc-ccEEEeccCCce
Confidence            4577777644 44444566666654321         1111211 2223333333333344433 22 356666654443


Q ss_pred             eeeee----c-CcccEEEEEECCCCCEEEEeeC-----------CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCE
Q 020798          108 LKTLI----G-HTNYVFCVNFNPQSNMIVSGAF-----------DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTM  171 (321)
Q Consensus       108 ~~~~~----~-~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  171 (321)
                      ...+.    + .....+.+...|+|.+.++...           -|.++.+|. .+.....+..+-..-+.++|+||++.
T Consensus        98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t  176 (307)
T COG3386          98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT  176 (307)
T ss_pred             eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence            12111    1 1133456778888887665443           133444443 35545555444445578999999987


Q ss_pred             EEEEe-CCCeEEEEeCCC--C----ceeeeeccCCCCCeEEEEEccCCCEEEEEecCC-eEEEEeCCCCcEEEEEeccC
Q 020798          172 IVTSS-YDGLCRIWDAST--G----HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN-TLRLWNYSTGKILKTYTGHT  242 (321)
Q Consensus       172 l~~~~-~dg~i~~~d~~~--~----~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~  242 (321)
                      |+.+. ..+.+.-|++..  +    +...............++...+|.+.+++..+| .|.+|+.. ++++..+....
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~  254 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV  254 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence            66654 457788777652  1    111112222233445677888888876555554 89999987 88888887653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.97  E-value=0.003  Score=35.50  Aligned_cols=30  Identities=23%  Similarity=0.365  Sum_probs=27.6

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeec
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSL   52 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~   52 (321)
                      ...|.+++|+|...+||.++.+|.|.+|.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            457999999999999999999999999976

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.95  E-value=0.14  Score=40.77  Aligned_cols=183  Identities=16%  Similarity=0.162  Sum_probs=108.0

Q ss_pred             cEEEEEECCCCCEEEEeeCCC--cEEEEecCCCEEEEEEeCCCC-CeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceee
Q 020798          117 YVFCVNFNPQSNMIVSGAFDE--TVRIWDVKTGKCLKVLPAHSD-PVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK  193 (321)
Q Consensus       117 ~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  193 (321)
                      ....+.+..++.++-+.+.-|  .|+.+|+.+++.....+.... --..++.. +++.....=.++...+||..+.+.+.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence            345677767777777776655  789999999987665543322 12234443 23344445568899999999877776


Q ss_pred             eeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCc--eeEEEeEEEecCCeEEEEeCCCCeEEE
Q 020798          194 TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS--KYCISSTFSVTNGKYIVSGSEDSCVYL  271 (321)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~v  271 (321)
                      ++.-..+  -..++  .+|+.|+.+.....|+++|..+-+..+.+.-....  ...+.-.-. -+|...|-.=....|..
T Consensus       125 ~~~y~~E--GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-i~G~IyANVW~td~I~~  199 (264)
T PF05096_consen  125 TFPYPGE--GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-INGKIYANVWQTDRIVR  199 (264)
T ss_dssp             EEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-ETTEEEEEETTSSEEEE
T ss_pred             EEecCCc--ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE-EcCEEEEEeCCCCeEEE
Confidence            6543322  23333  57778888877889999999887777766543221  111221112 25666665555667777


Q ss_pred             EEcccceEEEEecC------------C---CCCeEEEEecCCC-ceEEEE
Q 020798          272 WELQSRKVVQKLEG------------H---TDPVISVASHPTE-NIIASG  305 (321)
Q Consensus       272 wd~~~~~~~~~~~~------------h---~~~v~~~~~~p~~-~~l~s~  305 (321)
                      .|..++++...+.-            +   .+-.+.+|+.|.. ++++||
T Consensus       200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            88888887664421            1   2347899998875 556665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.0062  Score=56.48  Aligned_cols=100  Identities=26%  Similarity=0.374  Sum_probs=74.0

Q ss_pred             CCCEEEEEeCCCcEEEEecCCcce-eeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeE
Q 020798           84 DSRFLVSASDDKTIRLWDVPTATC-LKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTA  162 (321)
Q Consensus        84 ~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~  162 (321)
                      .+-.++.|+..|.+-..|+..+-. ...-..-..+|.+++|+.+|..++.|-.+|.|.+||+..++..+.+..|..+.+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            345688888888888888765311 1122223567999999999999999999999999999999888888877777655


Q ss_pred             EE---EccCCCEEEEEeCCCeEEEEe
Q 020798          163 VD---FNRDGTMIVTSSYDGLCRIWD  185 (321)
Q Consensus       163 ~~---~~~~~~~l~~~~~dg~i~~~d  185 (321)
                      +-   +..++..++++...|.  +|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEE
Confidence            43   3445567777777775  454

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.87  E-value=0.007  Score=46.18  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=61.3

Q ss_pred             CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEE-EEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeec
Q 020798           35 GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVS-DLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIG  113 (321)
Q Consensus        35 g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  113 (321)
                      +..+++|+.+|.+.+|.......       .......-...|. .+.--.++.+..+++.||.|+.|++..++.+.....
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~-------~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~  142 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGA-------HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ  142 (238)
T ss_pred             CceEEeecccceEEEecCCccch-------HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc
Confidence            45788899999999986542110       0001111111222 222334556788999999999999988877666666


Q ss_pred             Cc-ccEEEEEECCCCCEEEEe--eCCCcEEEEecC
Q 020798          114 HT-NYVFCVNFNPQSNMIVSG--AFDETVRIWDVK  145 (321)
Q Consensus       114 ~~-~~v~~~~~~~~~~~l~~~--~~dg~i~~wd~~  145 (321)
                      |. ..+.....+..++++..+  +.|..++.|++.
T Consensus       143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            66 444444444445555555  556666666654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.025  Score=53.02  Aligned_cols=188  Identities=16%  Similarity=0.175  Sum_probs=105.7

Q ss_pred             EEEECCCCCEEEEecCCceEEEeeccccCCCCC---CCC-----Ccccccccc-cccEEEEEECCCCCEEEE--EeCCCc
Q 020798           28 SVKFSHDGRLLASSSADKTLLTYSLSSISNSDS---TPP-----SPLQKFTGH-EQGVSDLVFSSDSRFLVS--ASDDKT   96 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~---~~~-----~~~~~~~~h-~~~i~~~~~~~~~~~l~~--~~~d~~   96 (321)
                      .++.++.-..+..++.-+.+.++....+.....   .++     .+...+.-| .-.|..+...+|+...++  .+.+-.
T Consensus        46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~  125 (1405)
T KOG3630|consen   46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA  125 (1405)
T ss_pred             hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence            456666666666666677666664433221111   011     011222222 234566677778765443  344447


Q ss_pred             EEEEecCCcceee-----ee------ecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCE-EEEEEeCCCCCeeEE
Q 020798           97 IRLWDVPTATCLK-----TL------IGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGK-CLKVLPAHSDPVTAV  163 (321)
Q Consensus        97 i~iwd~~~~~~~~-----~~------~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~  163 (321)
                      |..||+++.....     -+      ........++.|+|.- ...+.+..|+.|++..+.... ....++ -....+++
T Consensus       126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav  204 (1405)
T KOG3630|consen  126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAV  204 (1405)
T ss_pred             EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeE
Confidence            8889986543211     01      1122335577788753 235666788888887664322 112222 24567899


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCCCceeeee---ccCCCCCeEEEEEccCCCEEEE
Q 020798          164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL---IDDENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       164 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~l~~  217 (321)
                      +|+|.|..++.|-..|++.-|-..-. ....+   .......|.++.|-....++++
T Consensus       205 ~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  205 LWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             EeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            99999999999999999988865422 11111   1122456788888777666655

>PHA03098 kelch-like protein; Provisional

Probab=96.79  E-value=0.22  Score=44.93  Aligned_cols=187  Identities=15%  Similarity=0.122  Sum_probs=87.9

Q ss_pred             CCCEEEEeeCCC------cEEEEecCCCEEEEE--EeCCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEeCCCCcee
Q 020798          126 QSNMIVSGAFDE------TVRIWDVKTGKCLKV--LPAHSDPVTAVDFNRDGTMIVTSSYD-----GLCRIWDASTGHCM  192 (321)
Q Consensus       126 ~~~~l~~~~~dg------~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~  192 (321)
                      ++..++.|+.++      .+..||..+.+-...  ++........+.  -++..++.|+.+     ..+..||..+.+-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            345566666432      467788776653221  111111112222  256677777765     24667887655322


Q ss_pred             eeeccCCCCCeEEEEEccCCCEEEEEecC------CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC
Q 020798          193 KTLIDDENPPVSFVKFSPNGKFILVGTLD------NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED  266 (321)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  266 (321)
                      ...... .+........-+++.++.|+.+      +.+..||..+.+....-... .+......  ...++..++.|+.+
T Consensus       372 ~~~~lp-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~--~~~~~~iyv~GG~~  447 (534)
T PHA03098        372 EEPPLI-FPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP-ISHYGGCA--IYHDGKIYVIGGIS  447 (534)
T ss_pred             eCCCcC-cCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC-ccccCceE--EEECCEEEEECCcc
Confidence            110000 0111111222356666776632      45888998765433221111 11111111  12356677777643


Q ss_pred             C--------eEEEEEcccceE--EEEecCCCCCeEEEEecCCCceEEEEeecCC---ccEEEccccc
Q 020798          267 S--------CVYLWELQSRKV--VQKLEGHTDPVISVASHPTENIIASGALDND---RTVKIWTQEK  320 (321)
Q Consensus       267 g--------~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~---~~i~iw~~~~  320 (321)
                      +        .+.+||..+.+-  +..+.........+.  .++.+++.||.+..   ..|.+||.+.
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence            2        378888876542  221211111111222  26778888875532   3678887654

>PRK10115 protease 2; Provisional

Probab=96.71  E-value=0.52  Score=43.86  Aligned_cols=111  Identities=14%  Similarity=0.083  Sum_probs=65.7

Q ss_pred             ccEEEEEECCCCCEEEEEeCC-----CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCC------CcEEEE
Q 020798           74 QGVSDLVFSSDSRFLVSASDD-----KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD------ETVRIW  142 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~w  142 (321)
                      -.+..+.++|++++|+.+...     ..|++.|+.++..+........  ..++|.+|++.|+....+      ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            346778899999988865332     2588889887763322211111  458999998876554332      367778


Q ss_pred             ecCCC--EEEEEEeCCCCCee-EEEEccCCCEEEEEe---CCCeEEEEeC
Q 020798          143 DVKTG--KCLKVLPAHSDPVT-AVDFNRDGTMIVTSS---YDGLCRIWDA  186 (321)
Q Consensus       143 d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---~dg~i~~~d~  186 (321)
                      ++.++  +....+........ ....+.+++.++..+   .++.+.+++.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            88777  33333333333333 233344777655433   3457888885

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.68  E-value=0.0083  Score=33.74  Aligned_cols=29  Identities=10%  Similarity=0.290  Sum_probs=27.2

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      ..|..++|+|...+||.++.+|.|.+|.+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            45889999999999999999999999988

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.66  E-value=0.081  Score=40.82  Aligned_cols=91  Identities=21%  Similarity=0.200  Sum_probs=63.4

Q ss_pred             EEEEECCCCCEE-EEEeCCCcEEEEe--cCCccee-----eeeec----CcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           77 SDLVFSSDSRFL-VSASDDKTIRLWD--VPTATCL-----KTLIG----HTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        77 ~~~~~~~~~~~l-~~~~~d~~i~iwd--~~~~~~~-----~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      +.++|+.+.+.+ ++-+.+-+|..||  ..++...     ..+..    .....-.+++..+|+..+++-..++|...|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            467888776655 4567777887787  5555322     11111    0111123445667888888888899999999


Q ss_pred             CCCEEEEEEeCCCCCeeEEEEcc
Q 020798          145 KTGKCLKVLPAHSDPVTAVDFNR  167 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~  167 (321)
                      .+|+.+..+......+++++|--
T Consensus       241 ~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecC
Confidence            99999999988889999999963

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.64  E-value=0.48  Score=42.58  Aligned_cols=193  Identities=18%  Similarity=0.240  Sum_probs=111.6

Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeeecCc-ccEE---E-------EEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHT-NYVF---C-------VNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL  153 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~---~-------~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  153 (321)
                      +..++.++.++.|.-.|..+++.+-...... ..+.   +       +++  .+..++.++.++.+.-.|.++|+.+-..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            3466677778889999999887765543211 1111   1       112  1356777888999999999999876554


Q ss_pred             eCCCCC-eeEEEEcc---CCCEEEEEe------CCCeEEEEeCCCCceeeeeccCCC-----------------------
Q 020798          154 PAHSDP-VTAVDFNR---DGTMIVTSS------YDGLCRIWDASTGHCMKTLIDDEN-----------------------  200 (321)
Q Consensus       154 ~~~~~~-v~~~~~~~---~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~-----------------------  200 (321)
                      ...... -..+.-+|   ++ .++++.      .+|.+..+|.++++.+-.......                       
T Consensus       147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~  225 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG  225 (527)
T ss_pred             ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence            321100 00111112   34 444443      268899999998876543321100                       


Q ss_pred             -------CCe-EEEEEccCCCEEEEEecC-----C-----------eEEEEeCCCCcEEEEEeccCCcee-----EEEeE
Q 020798          201 -------PPV-SFVKFSPNGKFILVGTLD-----N-----------TLRLWNYSTGKILKTYTGHTNSKY-----CISST  251 (321)
Q Consensus       201 -------~~~-~~~~~~~~g~~l~~~~~d-----~-----------~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~  251 (321)
                             ..+ ..+.++|...++..+..+     +           .|.-.|+++++..-.++......+     .-..+
T Consensus       226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l  305 (527)
T TIGR03075       226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL  305 (527)
T ss_pred             CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence                   001 124666666666655422     2           577778899988777654221110     00011


Q ss_pred             EE-ecCCe---EEEEeCCCCeEEEEEcccceEE
Q 020798          252 FS-VTNGK---YIVSGSEDSCVYLWELQSRKVV  280 (321)
Q Consensus       252 ~~-~~~~~---~l~~~~~dg~i~vwd~~~~~~~  280 (321)
                      +. ..+|+   .++.+..+|.+++.|-.+++.+
T Consensus       306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            11 13554   7889999999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA03098 kelch-like protein; Provisional

Probab=96.58  E-value=0.35  Score=43.66  Aligned_cols=187  Identities=16%  Similarity=0.131  Sum_probs=86.9

Q ss_pred             CCCEEEEEeCCC------cEEEEecCCcceeee--eecCcccEEEEEECCCCCEEEEeeCC-----CcEEEEecCCCEEE
Q 020798           84 DSRFLVSASDDK------TIRLWDVPTATCLKT--LIGHTNYVFCVNFNPQSNMIVSGAFD-----ETVRIWDVKTGKCL  150 (321)
Q Consensus        84 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~  150 (321)
                      ++..++.|+.++      .+..||..+.+....  +.........+.  -++..++.||.+     ..+..||..+++-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            455666676543      467788777654221  110111111222  245666777754     24667787665422


Q ss_pred             E--EEeCCCCCeeEEEEccCCCEEEEEeCC------CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC-
Q 020798          151 K--VLPAHSDPVTAVDFNRDGTMIVTSSYD------GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD-  221 (321)
Q Consensus       151 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d-  221 (321)
                      .  .++..... .+++ .-++..++.|+.+      ..+..||+.+.+-........ +.....+...++..++.|+.+ 
T Consensus       372 ~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~  448 (534)
T PHA03098        372 EEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGCAIYHDGKIYVIGGISY  448 (534)
T ss_pred             eCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCceEEEECCEEEEECCccC
Confidence            1  11111111 1122 2356666777632      357788887653221110000 000111222356666666542 


Q ss_pred             -------CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC-----CeEEEEEcccce
Q 020798          222 -------NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED-----SCVYLWELQSRK  278 (321)
Q Consensus       222 -------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~  278 (321)
                             ..+.+||..+.+....-... .+.......  ..++..++.|+.+     ..+.+||..+.+
T Consensus       449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        449 IDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCCCcccceEEEecCCCCceeeCCCCC-cccccceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                   23888998776543321111 011111111  1267777777654     467888876543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.58  E-value=0.33  Score=39.91  Aligned_cols=152  Identities=14%  Similarity=0.194  Sum_probs=74.5

Q ss_pred             ccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec-CCCEEE
Q 020798           72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV-KTGKCL  150 (321)
Q Consensus        72 h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~-~~~~~~  150 (321)
                      -.+.+..+.-+++|++++++..-.-+.-||.....-...-..-...+..+.|.|++...+.+ ..|.|+.=+. ...+.-
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence            34678888899999988887665555677754332222223346779999999998765544 7788877652 111111


Q ss_pred             EE--Ee--CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc--CCCCCeEEEEEccCCCEEEEEecCCeE
Q 020798          151 KV--LP--AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--DENPPVSFVKFSPNGKFILVGTLDNTL  224 (321)
Q Consensus       151 ~~--~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~d~~i  224 (321)
                      ..  .+  ...-.+.+++|.+++...++++. |.+ +.....++.=++...  ........+.|.+..+-++ -+.+|.|
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~l  298 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVL  298 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEE
T ss_pred             ccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEE
Confidence            11  11  12223688999988877765554 444 233444443222211  2233466777776655444 4567766


Q ss_pred             EEE
Q 020798          225 RLW  227 (321)
Q Consensus       225 ~i~  227 (321)
                      .-|
T Consensus       299 l~~  301 (302)
T PF14870_consen  299 LRY  301 (302)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

>PHA02790 Kelch-like protein; Provisional

Probab=96.34  E-value=0.7  Score=41.09  Aligned_cols=183  Identities=9%  Similarity=0.030  Sum_probs=84.0

Q ss_pred             CCCEEEEEeCCC-----cEEEEecCCcceee--eeecCcccEEEEEECCCCCEEEEeeCC--CcEEEEecCCCEEEE--E
Q 020798           84 DSRFLVSASDDK-----TIRLWDVPTATCLK--TLIGHTNYVFCVNFNPQSNMIVSGAFD--ETVRIWDVKTGKCLK--V  152 (321)
Q Consensus        84 ~~~~l~~~~~d~-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~--~  152 (321)
                      ++..+++|+.++     .+..||..+++...  .+.........+  .-++...+.|+.+  ..+..||..+++-..  .
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            345566776543     46678877654322  111111111112  2345666777653  357778876553221  1


Q ss_pred             EeCCCCCeeEEEEccCCCEEEEEeCCC---eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          153 LPAHSDPVTAVDFNRDGTMIVTSSYDG---LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                      ++...... ++ ..-++...+.|+.++   .+..||.++..-........ +.....+..-+|+..+.|+   ...+||.
T Consensus       349 l~~~r~~~-~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~~~~~~IYv~GG---~~e~ydp  422 (480)
T PHA02790        349 LLKPRCNP-AV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY-PHYKSCALVFGRRLFLVGR---NAEFYCE  422 (480)
T ss_pred             CCCCCccc-EE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC-ccccceEEEECCEEEEECC---ceEEecC
Confidence            21111111 11 223567777777543   46678876653221100000 1111112233566666663   5778988


Q ss_pred             CCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC-----CeEEEEEcccc
Q 020798          230 STGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED-----SCVYLWELQSR  277 (321)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~  277 (321)
                      .+.+-...-... .+......  ...+++..+.|+.+     ..+..||..+.
T Consensus       423 ~~~~W~~~~~m~-~~r~~~~~--~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        423 SSNTWTLIDDPI-YPRDNPEL--IIVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCcEeEcCCCC-CCccccEE--EEECCEEEEECCcCCCcccceEEEEECCCC
Confidence            766543221111 11111111  12367778888754     24555665443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.32  E-value=0.41  Score=38.17  Aligned_cols=159  Identities=16%  Similarity=0.113  Sum_probs=99.3

Q ss_pred             EEEEEECCCCCEEEEEeCCC--cEEEEecCCcceeeeeecCc-ccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE
Q 020798           76 VSDLVFSSDSRFLVSASDDK--TIRLWDVPTATCLKTLIGHT-NYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV  152 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  152 (321)
                      ...+.|..++.++-+.+.-|  .|+.+|+.+++......-.. -.--.++...+ ....-.-.++...+||..+-+.+..
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEE
Confidence            34577767788777877776  68999999998765443221 12223444332 3334456788999999998888877


Q ss_pred             EeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC-CC---CCeEEEEEccCCCEEEEEecCCeEEEEe
Q 020798          153 LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD-EN---PPVSFVKFSPNGKFILVGTLDNTLRLWN  228 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~d~~i~i~d  228 (321)
                      ++- ...=+.++  .++..|+.......++++|..+.+....+... ..   ..++.+.+- +|...+-.-....|...|
T Consensus       126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id  201 (264)
T PF05096_consen  126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID  201 (264)
T ss_dssp             EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence            753 23446666  56777888888889999998876655544221 11   124455554 565555555677899999


Q ss_pred             CCCCcEEEEEe
Q 020798          229 YSTGKILKTYT  239 (321)
Q Consensus       229 ~~~~~~~~~~~  239 (321)
                      ..+|+.+..+.
T Consensus       202 p~tG~V~~~iD  212 (264)
T PF05096_consen  202 PETGKVVGWID  212 (264)
T ss_dssp             TTT-BEEEEEE
T ss_pred             CCCCeEEEEEE
Confidence            99999888763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.31  E-value=0.59  Score=39.97  Aligned_cols=195  Identities=16%  Similarity=0.250  Sum_probs=88.2

Q ss_pred             CCCEEEEec-CCceEEEeeccccCCCCCCCCCccccccc---cc----ccEEEEEECCCCCEEEEEe--CC----CcEEE
Q 020798           34 DGRLLASSS-ADKTLLTYSLSSISNSDSTPPSPLQKFTG---HE----QGVSDLVFSSDSRFLVSAS--DD----KTIRL   99 (321)
Q Consensus        34 ~g~~l~~~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~~---h~----~~i~~~~~~~~~~~l~~~~--~d----~~i~i   99 (321)
                      +.++|+..+ ..+.|.+.|+..-.    ..+.....+..   +.    .....+-.-|+|+.++++-  .+    |-+.+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dP----r~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~l  161 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDP----RKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVL  161 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-T----TS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEE
T ss_pred             cCCcEEeeeeccCcEEEEECCCCC----CCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEE
Confidence            456666655 67788888876311    11111111111   11    1223344457888887653  22    34777


Q ss_pred             EecCCcceeeeeec---CcccEEEEEECCCCCEEEEeeC--------------------CCcEEEEecCCCEEEEEEeCC
Q 020798          100 WDVPTATCLKTLIG---HTNYVFCVNFNPQSNMIVSGAF--------------------DETVRIWDVKTGKCLKVLPAH  156 (321)
Q Consensus       100 wd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~~wd~~~~~~~~~~~~~  156 (321)
                      +|-++.+.......   ....-...-+.|..+.++|...                    ...+.+||+.+.+.++++...
T Consensus       162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg  241 (461)
T PF05694_consen  162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG  241 (461)
T ss_dssp             E-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred             EcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence            88776655444322   1233455667777777777543                    357999999999999988765


Q ss_pred             CC--CeeEEEEc--cCCCE-EEEEeCCCeEEEE-eCCCCce----eeeecc---------C-------CCCCeEEEEEcc
Q 020798          157 SD--PVTAVDFN--RDGTM-IVTSSYDGLCRIW-DASTGHC----MKTLID---------D-------ENPPVSFVKFSP  210 (321)
Q Consensus       157 ~~--~v~~~~~~--~~~~~-l~~~~~dg~i~~~-d~~~~~~----~~~~~~---------~-------~~~~~~~~~~~~  210 (321)
                      ..  ....+.|.  |+... ++.+.-.+.|..| ..+.+.-    +-.+..         .       ..+-++.+.+|.
T Consensus       242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl  321 (461)
T PF05694_consen  242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL  321 (461)
T ss_dssp             TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred             CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence            43  24456664  44443 3333334444443 3233221    111100         0       023467889999


Q ss_pred             CCCEEEEEe-cCCeEEEEeCCCC
Q 020798          211 NGKFILVGT-LDNTLRLWNYSTG  232 (321)
Q Consensus       211 ~g~~l~~~~-~d~~i~i~d~~~~  232 (321)
                      |.++|.+++ .+|.|+.||+.+.
T Consensus       322 DDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  322 DDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             TS-EEEEEETTTTEEEEEE-SST
T ss_pred             CCCEEEEEcccCCcEEEEecCCC
Confidence            999998877 5899999999764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.24  E-value=0.65  Score=39.73  Aligned_cols=198  Identities=14%  Similarity=0.091  Sum_probs=101.0

Q ss_pred             CCCEEEEEeCCCcEEEEecCCcceeeeeecC--cccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCC-Ce
Q 020798           84 DSRFLVSASDDKTIRLWDVPTATCLKTLIGH--TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD-PV  160 (321)
Q Consensus        84 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~v  160 (321)
                      +++ ++.+..+|.|.-.|..+++.+.....-  ...+..-....+|+ ++.++.++.++.+|.++++..-....... .+
T Consensus        68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~  145 (370)
T COG1520          68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY  145 (370)
T ss_pred             CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence            444 555678888888888887744322111  11122222222454 77788889999999888887766655441 11


Q ss_pred             eEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCC--CCCeEEEEEccCCCEEEEEec--CCeEEEEeCCCCcEEE
Q 020798          161 TAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDE--NPPVSFVKFSPNGKFILVGTL--DNTLRLWNYSTGKILK  236 (321)
Q Consensus       161 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~--d~~i~i~d~~~~~~~~  236 (321)
                      ..-..-.++ .+...+.++.+...|..++...-......  ...+.......++ .+..+..  ++.+.-+|..++...-
T Consensus       146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w  223 (370)
T COG1520         146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKW  223 (370)
T ss_pred             ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEee
Confidence            111111233 33344467888888877776543322111  1111110012233 3344444  5567777887777665


Q ss_pred             EEeccCCce-------eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCC
Q 020798          237 TYTGHTNSK-------YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGH  286 (321)
Q Consensus       237 ~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h  286 (321)
                      .........       ..+.......++ .+..++.++.+...+..+++.+.+....
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         224 SQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             eeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            532111000       000000000112 2355667777888888888888776653

>PHA02790 Kelch-like protein; Provisional

Probab=96.21  E-value=0.83  Score=40.64  Aligned_cols=183  Identities=8%  Similarity=0.039  Sum_probs=87.9

Q ss_pred             CCEEEEeeCCC-----cEEEEecCCCEEEEE--EeCCCCCeeEEEEccCCCEEEEEeCC--CeEEEEeCCCCceeeeecc
Q 020798          127 SNMIVSGAFDE-----TVRIWDVKTGKCLKV--LPAHSDPVTAVDFNRDGTMIVTSSYD--GLCRIWDASTGHCMKTLID  197 (321)
Q Consensus       127 ~~~l~~~~~dg-----~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~  197 (321)
                      +..++.|+.++     .+..||..+++-...  ++...... +++ .-++...+.|+.+  ..+..||..+..-......
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            34456666542     466788776643221  11111111 122 2356677777753  3567788765432111000


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCC---eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          198 DENPPVSFVKFSPNGKFILVGTLDN---TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       198 ~~~~~~~~~~~~~~g~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      . .+........-+|+..+.|+.++   .+..||..+.+........ .+....  .....++...+.|+   .+.+||.
T Consensus       350 ~-~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~r~~~--~~~~~~~~IYv~GG---~~e~ydp  422 (480)
T PHA02790        350 L-KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YPHYKS--CALVFGRRLFLVGR---NAEFYCE  422 (480)
T ss_pred             C-CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-Cccccc--eEEEECCEEEEECC---ceEEecC
Confidence            1 11111122234677777777543   4778887765443221111 111111  11123577777774   4678888


Q ss_pred             ccceE--EEEecCCCCCeEEEEecCCCceEEEEeecCC---ccEEEccccc
Q 020798          275 QSRKV--VQKLEGHTDPVISVASHPTENIIASGALDND---RTVKIWTQEK  320 (321)
Q Consensus       275 ~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~---~~i~iw~~~~  320 (321)
                      .+.+-  +..+....... +++. -++++.+.||.++.   ..|..||.+.
T Consensus       423 ~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        423 SSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             CCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence            66532  22232212222 2222 36788888876532   3577888764

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.18  E-value=0.44  Score=42.10  Aligned_cols=148  Identities=11%  Similarity=0.202  Sum_probs=84.8

Q ss_pred             ccEEEEEECCCCCEE-EEEe--CCCcEEEEecCCcceeeeeecCcccEEEEEECCCC----CEEEEeeCCCcEEEEecCC
Q 020798           74 QGVSDLVFSSDSRFL-VSAS--DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS----NMIVSGAFDETVRIWDVKT  146 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l-~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~~wd~~~  146 (321)
                      .++..++|. ||+.+ ++.-  .+|.++.=|       ....|.-+.|..+.|.|-+    --+++.-....|.+|.+..
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd-------s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD-------SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC-------ccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            357789997 56544 4432  233333222       1234555678899999853    2344555678899999852


Q ss_pred             -----CEEEEEEeCC---CCC--eeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEE
Q 020798          147 -----GKCLKVLPAH---SDP--VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFIL  216 (321)
Q Consensus       147 -----~~~~~~~~~~---~~~--v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  216 (321)
                           ++.......+   .-+  -..+.|+|....|++-.....-.+++.+........--.....|.+.+|.+||+.|+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence                 2222111111   111  245789999888776655554445665533222222223455688999999999987


Q ss_pred             EEec-CCeEEEEeC
Q 020798          217 VGTL-DNTLRLWNY  229 (321)
Q Consensus       217 ~~~~-d~~i~i~d~  229 (321)
                      ++-. .=.-++||-
T Consensus       172 VAvGSsLHSyiWd~  185 (671)
T PF15390_consen  172 VAVGSSLHSYIWDS  185 (671)
T ss_pred             EEeCCeEEEEEecC
Confidence            7643 335677873

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.02  E-value=0.75  Score=39.30  Aligned_cols=145  Identities=15%  Similarity=0.143  Sum_probs=73.6

Q ss_pred             ccEEEEEECCCCCEEEEec-----------CCc-eEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           24 RAISSVKFSHDGRLLASSS-----------ADK-TLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~-----------~d~-~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      .....++|.++|+++++-.           ..+ .|.+++-.+...   . ......+...-.....+++.+++ +++ +
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG---~-~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~   87 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG---K-YDKSNVFAEELSMVTGLAVAVGG-VYV-A   87 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC---C-cceeEEeecCCCCccceeEecCC-EEE-e
Confidence            4556789999999877642           122 555553321110   0 00111222222345778888888 444 4


Q ss_pred             eCCCcEEEE-ecCCc-----c--eee-eeec----CcccEEEEEECCCCCEEEEeeCC-------------------CcE
Q 020798           92 SDDKTIRLW-DVPTA-----T--CLK-TLIG----HTNYVFCVNFNPQSNMIVSGAFD-------------------ETV  139 (321)
Q Consensus        92 ~~d~~i~iw-d~~~~-----~--~~~-~~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i  139 (321)
                      ... .|..+ +....     +  .+. .+..    +......+++.|||.+.++-+..                   |.|
T Consensus        88 ~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        88 TPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             CCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence            444 34433 44221     1  111 1211    12336688999999876654421                   345


Q ss_pred             EEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEe
Q 020798          140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS  176 (321)
Q Consensus       140 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  176 (321)
                      ..++...++.. .+...-.....++|+|+|+++++-.
T Consensus       167 ~r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       167 FRYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EEEecCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence            55555544322 2222223346789999888776544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.01  E-value=0.65  Score=37.65  Aligned_cols=221  Identities=15%  Similarity=0.185  Sum_probs=122.6

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecC------Cc-ceeeeeec-----CcccEEEEEECCCC------------CEEE
Q 020798           76 VSDLVFSSDSRFLVSASDDKTIRLWDVP------TA-TCLKTLIG-----HTNYVFCVNFNPQS------------NMIV  131 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~------------~~l~  131 (321)
                      -..|+++|.+.+-++....+...+||..      .. ...-.+..     .....+.+.|+...            ..++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4578999999888888888889999986      11 11222221     12234555555322            2367


Q ss_pred             EeeCCCcEEEEecCCCEE-----EEEEeCC-CCCe-eEEEEcc--CCCEEEEEe-CCCeEEEEeCCCCceee--eeccC-
Q 020798          132 SGAFDETVRIWDVKTGKC-----LKVLPAH-SDPV-TAVDFNR--DGTMIVTSS-YDGLCRIWDASTGHCMK--TLIDD-  198 (321)
Q Consensus       132 ~~~~dg~i~~wd~~~~~~-----~~~~~~~-~~~v-~~~~~~~--~~~~l~~~~-~dg~i~~~d~~~~~~~~--~~~~~-  198 (321)
                      .+++||+|.-|...-+..     ...+... ...| ..+++..  .+.+|..+. ..++|.+||-.-.+...  .+... 
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            788999999998532221     1122211 2233 3344443  345555554 57889999865332110  01000 


Q ss_pred             --CCC------------CeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccC--CceeEEEe---EEEecCCeE
Q 020798          199 --ENP------------PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT--NSKYCISS---TFSVTNGKY  259 (321)
Q Consensus       199 --~~~------------~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~  259 (321)
                        ...            .|+...-.+++..=+.+...|.|.+||+ ++++++++....  +..+.+..   .|-...+.+
T Consensus       185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l  263 (336)
T TIGR03118       185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL  263 (336)
T ss_pred             CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence              000            0111222222222223334468999995 477777774221  22233322   122345778


Q ss_pred             EEEeCCCCeEEEEEcccceEEEEecCCC------CCeEEEEecC
Q 020798          260 IVSGSEDSCVYLWELQSRKVVQKLEGHT------DPVISVASHP  297 (321)
Q Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~~~h~------~~v~~~~~~p  297 (321)
                      |+.--.||+|..||..+++.+..+....      .-++.|+|..
T Consensus       264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            8877789999999999888777766543      3467888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.96  E-value=0.011  Score=54.09  Aligned_cols=170  Identities=14%  Similarity=0.265  Sum_probs=90.5

Q ss_pred             ccCCcccEEEEEECCC-CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEEC---CCCCEEEEEeCC
Q 020798           19 LNGHLRAISSVKFSHD-GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFS---SDSRFLVSASDD   94 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~-g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~---~~~~~l~~~~~d   94 (321)
                      ++|-.++|-.++|.+. ...++  -.-|.+.+|++.-.... ..+...+.....-...+.-+.|.   ++.-++..+-.+
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~-iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGE-IQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccc-cccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            3556677888888642 22332  33456778887653221 11111111111112233444454   466677788888


Q ss_pred             CcEEEEecCCcceeeeeecCcccEEE-----------EEECCCCCEEEEeeCCCcEEEEecC-----CCEEEEEEeCCCC
Q 020798           95 KTIRLWDVPTATCLKTLIGHTNYVFC-----------VNFNPQSNMIVSGAFDETVRIWDVK-----TGKCLKVLPAHSD  158 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~l~~~~~dg~i~~wd~~-----~~~~~~~~~~~~~  158 (321)
                      +++++.++..... .-+.+|+..+..           -.++|||..|+.+..||.++.|.+.     .-++....+.|..
T Consensus       205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence            8988877654322 223345433322           2379999999999999999999763     1223344455552


Q ss_pred             -CeeEEEEccCC---------CEEEEEe-CCCeEEEEeCCCCcee
Q 020798          159 -PVTAVDFNRDG---------TMIVTSS-YDGLCRIWDASTGHCM  192 (321)
Q Consensus       159 -~v~~~~~~~~~---------~~l~~~~-~dg~i~~~d~~~~~~~  192 (321)
                       +-.|.-|+.+.         .++++++ .+..+++|....-+|.
T Consensus       284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence             21111122211         2344444 3456788876655554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.88  E-value=0.89  Score=38.84  Aligned_cols=142  Identities=15%  Similarity=0.171  Sum_probs=68.6

Q ss_pred             CeeEEEEccCCCEEEEEe-----------CCC-eEEEEeCCC--Cce--eeeeccCCCCCeEEEEEccCCCEEEEEecCC
Q 020798          159 PVTAVDFNRDGTMIVTSS-----------YDG-LCRIWDAST--GHC--MKTLIDDENPPVSFVKFSPNGKFILVGTLDN  222 (321)
Q Consensus       159 ~v~~~~~~~~~~~l~~~~-----------~dg-~i~~~d~~~--~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~  222 (321)
                      ....++|.++|+++++..           ..+ .|.+++-.+  ++.  ...+. ........+++.++| ++ ++... 
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~~~~~G-ly-V~~~~-   90 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLAVAVGG-VY-VATPP-   90 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCccceeEecCC-EE-EeCCC-
Confidence            346788888888776642           223 676665432  222  12222 222234678888888 44 44444 


Q ss_pred             eEEEE-eCCC-----CcE--E-EEEeccCC-ceeEEEeEEEecCCeEEEEeCC-------------------CCeEEEEE
Q 020798          223 TLRLW-NYST-----GKI--L-KTYTGHTN-SKYCISSTFSVTNGKYIVSGSE-------------------DSCVYLWE  273 (321)
Q Consensus       223 ~i~i~-d~~~-----~~~--~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-------------------dg~i~vwd  273 (321)
                      .|..| |...     ++.  + ..+..... ...........+||.+.++-+.                   .|.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            34444 4421     121  1 11221100 0111222233456665543331                   13455555


Q ss_pred             cccceEEEEecCCCCCeEEEEecCCCceEEEE
Q 020798          274 LQSRKVVQKLEGHTDPVISVASHPTENIIASG  305 (321)
Q Consensus       274 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  305 (321)
                      ...++....-.++. ....++|+|+|+++++-
T Consensus       171 pdg~~~e~~a~G~r-np~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       171 PDGGKLRVVAHGFQ-NPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             cCCCeEEEEecCcC-CCccceECCCCCEEEEc
Confidence            54444322223443 34789999999998764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.59  E-value=0.11  Score=48.95  Aligned_cols=149  Identities=15%  Similarity=0.106  Sum_probs=89.6

Q ss_pred             cEEEEEECCCCCEEEE--ecCCceEEEeeccccCCCCCCCCCcccc---cccccccEEEEEECCCCC-EEEEEeCCCcEE
Q 020798           25 AISSVKFSHDGRLLAS--SSADKTLLTYSLSSISNSDSTPPSPLQK---FTGHEQGVSDLVFSSDSR-FLVSASDDKTIR   98 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~--~~~d~~v~~~~~~~~~~~~~~~~~~~~~---~~~h~~~i~~~~~~~~~~-~l~~~~~d~~i~   98 (321)
                      ++..+...+|++..++  .+++..|..||+..+.........++..   ......-..++.|+|.=. ..+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            4556667788775444  4555578888887754333222222211   111122345778887532 356677888888


Q ss_pred             EEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC----CCCeeEEEEccCCCEEEE
Q 020798           99 LWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH----SDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus        99 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~  174 (321)
                      +..+.-......-.......++++|+|.|.+++.|-..|++.-|... .+....+++.    ...|.++.|-....++++
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            87654322111112245568899999999999999999999888643 2322333221    356889999876666554

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.53  E-value=0.67  Score=40.28  Aligned_cols=143  Identities=22%  Similarity=0.286  Sum_probs=84.9

Q ss_pred             CCCCEEE-EEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCC-------CEEEEeeCCCcEEEEecCC-CEEEEEE
Q 020798           83 SDSRFLV-SASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-------NMIVSGAFDETVRIWDVKT-GKCLKVL  153 (321)
Q Consensus        83 ~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~dg~i~~wd~~~-~~~~~~~  153 (321)
                      .+..+|+ .|+.-..++--|++.++.+.....|...  -+.+.|..       ..-+.|-.+..|.-.|.+- +..+...
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            3455554 4455566777788888888877766664  46677753       2223444455555556543 2222211


Q ss_pred             eCCCCCeeEEEEc----cCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          154 PAHSDPVTAVDFN----RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       154 ~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                       .....++.-.|+    ....++++++..|-|++||--. ...++.+...+..|..+..+.+|+++++.+. ..+.+-|+
T Consensus       555 -esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         555 -ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             -eehhccccccccccccccCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence             112222222222    2345899999999999999532 2233344445566888889999999877664 46777775


Q ss_pred             C
Q 020798          230 S  230 (321)
Q Consensus       230 ~  230 (321)
                      +
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            3

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.30  E-value=0.95  Score=34.54  Aligned_cols=174  Identities=14%  Similarity=0.143  Sum_probs=87.0

Q ss_pred             CCEEEEeeC--CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE-EEEeCCCeEEEEeCCCCceeeeeccCCCCCe
Q 020798          127 SNMIVSGAF--DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI-VTSSYDGLCRIWDASTGHCMKTLIDDENPPV  203 (321)
Q Consensus       127 ~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  203 (321)
                      +..+.+.+.  ...|++||+.+++.+...+.....+..=-...-+..+ ...=.+|.-..+|.++.++...+.-..    
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G----  131 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG----  131 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC----
Confidence            445555543  3579999999888766544322122111111123333 334467888889988776655442211    


Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccC--CceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEE
Q 020798          204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT--NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ  281 (321)
Q Consensus       204 ~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  281 (321)
                      .......+++.|..+.....++.-|.++-....+..-..  .++..+.-.-+ -+|...|--=.+..|...|..+++++.
T Consensus       132 eGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         132 EGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             cceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEE
Confidence            223445566667766666667776765433322221110  11111110101 134444433333334444445554433


Q ss_pred             Ee------------cCCCCCeEEEEecCCC-ceEEEE
Q 020798          282 KL------------EGHTDPVISVASHPTE-NIIASG  305 (321)
Q Consensus       282 ~~------------~~h~~~v~~~~~~p~~-~~l~s~  305 (321)
                      -+            ..|.+-.+.+++.|++ +++++|
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            22            2244567889999997 667775

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.28  E-value=0.53  Score=40.23  Aligned_cols=160  Identities=16%  Similarity=0.149  Sum_probs=90.7

Q ss_pred             EeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce-eeeeccCCCC----CeE-EEEEccCCCEEEEEecCCeEEE
Q 020798          153 LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC-MKTLIDDENP----PVS-FVKFSPNGKFILVGTLDNTLRL  226 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~----~~~-~~~~~~~g~~l~~~~~d~~i~i  226 (321)
                      +......+..+-..|+++.+..-+. ..+.++++.+... .+++......    .+. ....-..|.-+.+++.||-|.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            4444566778888999998776555 6778888765322 1222222111    111 1112235666788889998877


Q ss_pred             E-eCCCC-c----EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCc
Q 020798          227 W-NYSTG-K----ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN  300 (321)
Q Consensus       227 ~-d~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~  300 (321)
                      | |++.+ .    .++.++-...   .+.......+.+-+++-..+|++.++.-...+.+-.-. -.+...-+++||.+.
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa---~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~  370 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPA---EVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQA  370 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcc---cceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccc
Confidence            7 54432 1    1222221111   12222223344567777888998887754444332111 223456688999999


Q ss_pred             eEEEEeecCCccEEEccccc
Q 020798          301 IIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       301 ~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +|++-  | .|.|+++.+++
T Consensus       371 ~Ll~e--~-~gki~~~~l~N  387 (733)
T COG4590         371 YLLSE--D-QGKIRLAQLEN  387 (733)
T ss_pred             hheee--c-CCceEEEEecC
Confidence            99873  3 46788888765

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.28  E-value=2.7  Score=39.62  Aligned_cols=153  Identities=16%  Similarity=0.230  Sum_probs=87.6

Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeeecCcccE-------------EEEEECC--CCCEEEEeeC----------CCcE
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYV-------------FCVNFNP--QSNMIVSGAF----------DETV  139 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------dg~i  139 (321)
                      +..++.++.|+.+.-.|.++++....+.. ...+             ..+.-.|  .++.++.++.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            44788888999999999999887654321 1111             0111122  1345665542          6889


Q ss_pred             EEEecCCCEEEEEEeCC---------C--------CCe-eEEEEccCCCEEEEEe------------------CCCeEEE
Q 020798          140 RIWDVKTGKCLKVLPAH---------S--------DPV-TAVDFNRDGTMIVTSS------------------YDGLCRI  183 (321)
Q Consensus       140 ~~wd~~~~~~~~~~~~~---------~--------~~v-~~~~~~~~~~~l~~~~------------------~dg~i~~  183 (321)
                      +-+|.++|+.+-.+..-         .        ..+ ..+++.+....++...                  ..+.+.-
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            99999999877554311         0        011 2344555444444321                  1234555


Q ss_pred             EeCCCCceeeeecc-CCC-------CCeEEEEEcc-CCC---EEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          184 WDASTGHCMKTLID-DEN-------PPVSFVKFSP-NGK---FILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       184 ~d~~~~~~~~~~~~-~~~-------~~~~~~~~~~-~g~---~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      .|.++++..-.+.. .+.       ....-+.+.. +|+   .++.++.+|.+.++|.++++++...
T Consensus       419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            67777765543322 110       1112223333 553   6888899999999999999877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.24  E-value=1.2  Score=40.52  Aligned_cols=107  Identities=18%  Similarity=0.318  Sum_probs=69.0

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCcceeeee-ecCcccEEEEEEC--CCCCEEEEeeCCCcEEEEecCC------C-
Q 020798           78 DLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTL-IGHTNYVFCVNFN--PQSNMIVSGAFDETVRIWDVKT------G-  147 (321)
Q Consensus        78 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~wd~~~------~-  147 (321)
                      -+.-+.-++..++-+...++.|||...+...... ....+.|..+.|.  |+++.+++.+....|.+|--..      + 
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            3444445555555555567999999887643322 2446778899985  6788898889999999885311      1 


Q ss_pred             --EEEEE--EeCCC-CCeeEEEEccCCCEEEEEeCCCeEEEEeC
Q 020798          148 --KCLKV--LPAHS-DPVTAVDFNRDGTMIVTSSYDGLCRIWDA  186 (321)
Q Consensus       148 --~~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  186 (321)
                        ..+..  +..+. .+|.+..|.++|..++.++  +.+.++|-
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence              12222  22333 6789999999997655443  45777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.16  E-value=1.4  Score=35.80  Aligned_cols=219  Identities=12%  Similarity=0.149  Sum_probs=112.7

Q ss_pred             ccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccccc-----ccccEEEEEECCCCC------------
Q 020798           24 RAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTG-----HEQGVSDLVFSSDSR------------   86 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~i~~~~~~~~~~------------   86 (321)
                      ..-+-++|+|.+..-++...-+...+|+...-..... +...+-.+..     .....+.+.|+....            
T Consensus        23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~-~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLV-QDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             cccceeEecCCCCEEEecCCcceEEeecCCcccccCC-ccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            3456789999998777777778888998752110000 0000111110     123456666654322            


Q ss_pred             EEEEEeCCCcEEEEecCCcce-----eeeee-cCcccE-EEEEEC--CCCCEEEEee-CCCcEEEEecCCCEEEE--EE-
Q 020798           87 FLVSASDDKTIRLWDVPTATC-----LKTLI-GHTNYV-FCVNFN--PQSNMIVSGA-FDETVRIWDVKTGKCLK--VL-  153 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~~-----~~~~~-~~~~~v-~~~~~~--~~~~~l~~~~-~dg~i~~wd~~~~~~~~--~~-  153 (321)
                      .++.+++||+|.-|...-...     ...+. .....+ ..+++.  ..+++|..+. ..++|.++|-.-.+...  .+ 
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence            256778999999998532221     11111 111222 344444  3356666554 56889998853222110  01 


Q ss_pred             ----eCCCCC--ee------EEEE---ccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC-CCCCeEEEEEcc------C
Q 020798          154 ----PAHSDP--VT------AVDF---NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD-ENPPVSFVKFSP------N  211 (321)
Q Consensus       154 ----~~~~~~--v~------~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~------~  211 (321)
                          +..-.+  |.      -+.|   .++...=+.+..-|.|.+||+.. ..++++... .-.....++..|      .
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCC
Confidence                100011  10      0111   11111122233446889999764 445544221 112234566655      4


Q ss_pred             CCEEEEEecCCeEEEEeCCCCcEEEEEeccCCc
Q 020798          212 GKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS  244 (321)
Q Consensus       212 g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  244 (321)
                      |.+|+---.||+|..||..+++.+..+....+.
T Consensus       261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~  293 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNH  293 (336)
T ss_pred             CCeEEeecCCceeEEecCCCCceeeeecCCCCC
Confidence            566665557999999999999888777655444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.14  E-value=1.4  Score=35.48  Aligned_cols=144  Identities=17%  Similarity=0.189  Sum_probs=83.7

Q ss_pred             cEEEEEECCCCCEEEEec---CCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           25 AISSVKFSHDGRLLASSS---ADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~---~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      .+.+.+.+++|+.+|...   ....+.++....         .....+.+  ..+..-.|++++...+....+...+++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~---------~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~   93 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG---------PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVR   93 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC---------cceeeccC--CccccccccCCCCEEEEEcCCCceEEEE
Confidence            688999999999876655   233444432211         01111122  3567778999988777666666666663


Q ss_pred             -cCCcceee-eeec--CcccEEEEEECCCCCEEEEee---CCCcEEEEecC---CC------EEEEEEeCCCCCeeEEEE
Q 020798          102 -VPTATCLK-TLIG--HTNYVFCVNFNPQSNMIVSGA---FDETVRIWDVK---TG------KCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus       102 -~~~~~~~~-~~~~--~~~~v~~~~~~~~~~~l~~~~---~dg~i~~wd~~---~~------~~~~~~~~~~~~v~~~~~  165 (321)
                       ...++... .+..  -...|..+.++|||..++.-.   .++.|.+=-+.   .+      ............+.+++|
T Consensus        94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W  173 (253)
T PF10647_consen   94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW  173 (253)
T ss_pred             ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence             23332211 1111  112799999999999876544   34666665432   22      111112223457899999


Q ss_pred             ccCCCEEEEEeCCC
Q 020798          166 NRDGTMIVTSSYDG  179 (321)
Q Consensus       166 ~~~~~~l~~~~~dg  179 (321)
                      .+++.+++.+...+
T Consensus       174 ~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  174 SDDSTLVVLGRSAG  187 (253)
T ss_pred             cCCCEEEEEeCCCC
Confidence            99998777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.11  E-value=2.9  Score=39.06  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=54.8

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCC----CCCCCCCcc-cc-------c-ccccccEEEEEECCC---CC
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISN----SDSTPPSPL-QK-------F-TGHEQGVSDLVFSSD---SR   86 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~----~~~~~~~~~-~~-------~-~~h~~~i~~~~~~~~---~~   86 (321)
                      .-.|..+.+||+|++||..|..+...+. +-....    .+....... +.       + ..+...|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~-LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLE-LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEE-eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            4589999999999999999987766654 321100    000001000 00       1 234567889999996   47


Q ss_pred             EEEEEeCCCcEEEEecCCcc
Q 020798           87 FLVSASDDKTIRLWDVPTAT  106 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~  106 (321)
                      .|+.=..|+.+++||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            88888999999999996543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.05  E-value=0.16  Score=27.72  Aligned_cols=32  Identities=16%  Similarity=0.296  Sum_probs=26.3

Q ss_pred             CCeeEEEEccCC---CEEEEEeCCCeEEEEeCCCC
Q 020798          158 DPVTAVDFNRDG---TMIVTSSYDGLCRIWDASTG  189 (321)
Q Consensus       158 ~~v~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~  189 (321)
                      +++.++.|+|..   .+|+.+-..|.+.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            357899999854   48888888999999999964

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.94  E-value=1.6  Score=35.13  Aligned_cols=145  Identities=13%  Similarity=0.150  Sum_probs=83.8

Q ss_pred             cEEEEEECCCCCEEEEEe---CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEe-cCCCEEE
Q 020798           75 GVSDLVFSSDSRFLVSAS---DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD-VKTGKCL  150 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd-~~~~~~~  150 (321)
                      .+.+.+++++++.++...   ....+.++.....  ..... ....+..-.|++++...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678899999999877655   2334555543322  22221 223566778999977666655566666663 2333221


Q ss_pred             -EEEeCC--CCCeeEEEEccCCCEEEEEe---CCCeEEEEeCC---CC--ce---eeeeccCCCCCeEEEEEccCCCEEE
Q 020798          151 -KVLPAH--SDPVTAVDFNRDGTMIVTSS---YDGLCRIWDAS---TG--HC---MKTLIDDENPPVSFVKFSPNGKFIL  216 (321)
Q Consensus       151 -~~~~~~--~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~---~~--~~---~~~~~~~~~~~~~~~~~~~~g~~l~  216 (321)
                       ......  ...|.++.++|||..++...   .++.+.+--+.   .+  ..   ...+.......+..+.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             112211  12899999999999877654   34666655331   22  11   1112222234678899999998777


Q ss_pred             EEecCC
Q 020798          217 VGTLDN  222 (321)
Q Consensus       217 ~~~~d~  222 (321)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            765433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.92  E-value=2.9  Score=38.12  Aligned_cols=71  Identities=18%  Similarity=0.257  Sum_probs=46.7

Q ss_pred             CeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEc--cCCCEEEEEecCCeEEEEeC
Q 020798          159 PVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFS--PNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       159 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~l~~~~~d~~i~i~d~  229 (321)
                      .+.-+.-+.-++..++-+....+.+||.+.+.......-.....|..+.|.  |+|+.+++.+....|.+|.-
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            334444444444444444556899999988764433322345567777665  68999999999999999853

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.92  E-value=1.4  Score=34.37  Aligned_cols=211  Identities=12%  Similarity=0.141  Sum_probs=107.5

Q ss_pred             CEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCC---CEEEEeeCCCcEEEEecCCC--EEEEEEeC-----
Q 020798           86 RFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS---NMIVSGAFDETVRIWDVKTG--KCLKVLPA-----  155 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~--~~~~~~~~-----  155 (321)
                      .++..--..+.|.-||+..++..+...... ...++.+--.+   .+.+.++..-.|--||....  ....++..     
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p-~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~  106 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP-PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR  106 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEEecC-cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence            344444555677779887766543322111 12222222111   22333333333445663221  22222111     


Q ss_pred             CCCCeeEEEEccCCCEEEEEeC----------CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE-ecCCeE
Q 020798          156 HSDPVTAVDFNRDGTMIVTSSY----------DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-TLDNTL  224 (321)
Q Consensus       156 ~~~~v~~~~~~~~~~~l~~~~~----------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~d~~i  224 (321)
                      .......-..+|+|+++. |..          .|.++.|-+.. + +..+... -...+.++|+.+.+.+..- +.+-.|
T Consensus       107 kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~~~-v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  107 KKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGH-Q-VELIWNC-VGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             HhcccccCccCCCCceee-eeeccccccccccccEEEEeccCC-C-ceeeehh-ccCCccccccccCcEEEEEccCceEE
Confidence            123445566789998743 321          23344443221 1 1111111 1123457888777666543 455677


Q ss_pred             EEEe--CCCCc-----EEEEEec-----cCCc-eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeE
Q 020798          225 RLWN--YSTGK-----ILKTYTG-----HTNS-KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVI  291 (321)
Q Consensus       225 ~i~d--~~~~~-----~~~~~~~-----~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~  291 (321)
                      .-||  ..+|.     .+..+..     +..+ ..++     ..+|.+.++.-.-++|.-+|..+++.+.+++-....|+
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I-----D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qit  257 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI-----DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQIT  257 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE-----ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceE
Confidence            7777  44442     2322221     1111 1122     23577777777778999999999999999988889999


Q ss_pred             EEEecCC--CceEEEEe
Q 020798          292 SVASHPT--ENIIASGA  306 (321)
Q Consensus       292 ~~~~~p~--~~~l~s~~  306 (321)
                      +++|--.  ..+.+|+.
T Consensus       258 sccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  258 SCCFGGKNLDILYVTTA  274 (310)
T ss_pred             EEEecCCCccEEEEEeh
Confidence            9999654  23444444

>PRK10115 protease 2; Provisional

Probab=94.43  E-value=4.3  Score=37.96  Aligned_cols=195  Identities=12%  Similarity=0.089  Sum_probs=91.6

Q ss_pred             ccEEEEEECCCCCEEEEecCC-----ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC----
Q 020798           24 RAISSVKFSHDGRLLASSSAD-----KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD----   94 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d----   94 (321)
                      -.+..+.+||||++|+.+...     ..+.+.++.+...    -.   ..+.+   .-..++|.+|++.|+....+    
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~----l~---~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~  196 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW----YP---ELLDN---VEPSFVWANDSWTFYYVRKHPVTL  196 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC----CC---ccccC---cceEEEEeeCCCEEEEEEecCCCC
Confidence            457778999999988865332     2455555532110    00   11111   11458999999877655442    


Q ss_pred             --CcEEEEecCCcc--eeeeeecCcccEE-EEEECCCCCEEEEee---CCCcEEEEecC--CCEEEEEEeCCCCCeeEEE
Q 020798           95 --KTIRLWDVPTAT--CLKTLIGHTNYVF-CVNFNPQSNMIVSGA---FDETVRIWDVK--TGKCLKVLPAHSDPVTAVD  164 (321)
Q Consensus        95 --~~i~iwd~~~~~--~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~~  164 (321)
                        ..|..+++.++.  -...+........ ....+.++++++..+   .++.+.+++..  ++.....++........+.
T Consensus       197 ~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  276 (686)
T PRK10115        197 LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD  276 (686)
T ss_pred             CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE
Confidence              357777887762  2222222222222 333444777655433   34578888842  3332222322222222222


Q ss_pred             EccCCCEEEEEeCC-CeEEE--EeCCCCceeeeeccC-CCCCeEEEEEccCCCEEEEEecCCe--EEEEeCC
Q 020798          165 FNRDGTMIVTSSYD-GLCRI--WDASTGHCMKTLIDD-ENPPVSFVKFSPNGKFILVGTLDNT--LRLWNYS  230 (321)
Q Consensus       165 ~~~~~~~l~~~~~d-g~i~~--~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~d~~--i~i~d~~  230 (321)
                       +..+.+++....+ ...++  .++........+... ....+..+.+. .+.++++...++.  +.+++..
T Consensus       277 -~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~  346 (686)
T PRK10115        277 -HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRK  346 (686)
T ss_pred             -eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCC
Confidence             3333333333222 23333  344321112233333 22356666665 3334444555665  4555544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.42  E-value=4.4  Score=37.93  Aligned_cols=73  Identities=15%  Similarity=0.266  Sum_probs=50.8

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCC----------cce--e-eee--------ecCcccEEEEEECCC---CCE
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPT----------ATC--L-KTL--------IGHTNYVFCVNFNPQ---SNM  129 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~----------~~~--~-~~~--------~~~~~~v~~~~~~~~---~~~  129 (321)
                      -.|..+.++|+|++|+..|..|-+ |-.+..          ++.  . +++        ..+...|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            368899999999999988886643 433321          111  0 111        134457889999996   477


Q ss_pred             EEEeeCCCcEEEEecCCC
Q 020798          130 IVSGAFDETVRIWDVKTG  147 (321)
Q Consensus       130 l~~~~~dg~i~~wd~~~~  147 (321)
                      |+.-..|+++|+||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            888889999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.42  E-value=1.1  Score=38.68  Aligned_cols=82  Identities=10%  Similarity=0.288  Sum_probs=52.9

Q ss_pred             CCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC-----------------CCEEEE-Ee
Q 020798          158 DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN-----------------GKFILV-GT  219 (321)
Q Consensus       158 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------g~~l~~-~~  219 (321)
                      ..+.++..+|.+++.++...=|.|.++|+.++..++-+..-.+..+..+.....                 ..+|+. +-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            457889999999988888888999999998876555443322222222211111                 112332 44


Q ss_pred             cCCeEEEEeCCCCcEEEEEe
Q 020798          220 LDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       220 ~d~~i~i~d~~~~~~~~~~~  239 (321)
                      .-|.|.||+++.+..+..+.
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEE
Confidence            57789999998888777664

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.37  E-value=0.21  Score=27.24  Aligned_cols=30  Identities=23%  Similarity=0.524  Sum_probs=25.3

Q ss_pred             cEEEEEECCCC---CEEEEeeCCCcEEEEecCC
Q 020798          117 YVFCVNFNPQS---NMIVSGAFDETVRIWDVKT  146 (321)
Q Consensus       117 ~v~~~~~~~~~---~~l~~~~~dg~i~~wd~~~  146 (321)
                      .+.++.|+|++   .+|+.+-..|.+.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57899999854   4788888889999999985

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.24  E-value=0.44  Score=37.27  Aligned_cols=62  Identities=18%  Similarity=0.357  Sum_probs=47.5

Q ss_pred             cCCeEEEEeCCCCeEEEEEcccceEEEE-------ec-------CCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          255 TNGKYIVSGSEDSCVYLWELQSRKVVQK-------LE-------GHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------~~-------~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .++.+|++-+.+|.+++||+.+++.+..       +.       .....|..+.++.+|.-+++-+   +|..+.|+.+
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls---ng~~y~y~~~   95 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS---NGDSYSYSPD   95 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe---CCCEEEeccc
Confidence            4678899999999999999998875432       12       2446788999999998888765   4678888865

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.19  E-value=3  Score=35.10  Aligned_cols=108  Identities=20%  Similarity=0.285  Sum_probs=54.4

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcc-cccccccccEEEEEECCC----CCEEEEEeCC-----
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPL-QKFTGHEQGVSDLVFSSD----SRFLVSASDD-----   94 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~----~~~l~~~~~d-----   94 (321)
                      ..+.|+|.|||+++++- ..|.|.+++......   .....+ ........+...++++|+    +.+.++.+..     
T Consensus         3 ~P~~~a~~pdG~l~v~e-~~G~i~~~~~~g~~~---~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAE-RSGRIWVVDKDGSLK---TPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             SEEEEEEETTSCEEEEE-TTTEEEEEETTTEEC---EEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             CceEEEEeCCCcEEEEe-CCceEEEEeCCCcCc---ceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence            35689999999887764 489998887222110   000000 122344578899999994    3333333311     


Q ss_pred             ---CcEEEEecCCc--c-----ee-eeeec---CcccEEEEEECCCCCEEEEeeCC
Q 020798           95 ---KTIRLWDVPTA--T-----CL-KTLIG---HTNYVFCVNFNPQSNMIVSGAFD  136 (321)
Q Consensus        95 ---~~i~iwd~~~~--~-----~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~d  136 (321)
                         ..|.-|.....  .     .+ ..+..   .......+.|.|||.++++.+..
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence               23444444332  1     11 11111   12234569999999766665543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.18  E-value=1.3  Score=39.32  Aligned_cols=119  Identities=11%  Similarity=0.172  Sum_probs=67.6

Q ss_pred             CcccEEEEEECCCC----CEEEEecCCceEEEeeccccCCCCCC-----CCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           22 HLRAISSVKFSHDG----RLLASSSADKTLLTYSLSSISNSDST-----PPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        22 h~~~v~~~~~s~~g----~~l~~~~~d~~v~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      ..+-|..+.|+|-+    ..|+...-...|.+|.+.........     ..+....+.-.   -..+.|+|....|+.-.
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvL---pQGCVWHPk~~iL~VLT  131 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVL---PQGCVWHPKKAILTVLT  131 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccC---CCcccccCCCceEEEEe
Confidence            34568889999853    24444555789999987631110000     00000011111   13467999988776555


Q ss_pred             CCCcEEEEecCCc--ceeeeeecCcccEEEEEECCCCCEEEEee-CCCcEEEEec
Q 020798           93 DDKTIRLWDVPTA--TCLKTLIGHTNYVFCVNFNPQSNMIVSGA-FDETVRIWDV  144 (321)
Q Consensus        93 ~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~  144 (321)
                      ....-.++++...  +....+ .-.+.|.|.+|.+||+.|+.+- ..-.-++||-
T Consensus       132 ~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             cCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            4443345555332  222233 3567799999999999877653 3334578874

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.17  E-value=2.7  Score=34.63  Aligned_cols=277  Identities=12%  Similarity=0.144  Sum_probs=115.8

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      ...+..+.|..+..-+++|.. +.+.. ............   ...-..-.-....+.|..+ +.+++ +..+ +.+...
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~~-g~il~-T~DGG~tW~~~~---~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~   87 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGAY-GTILK-TTDGGKTWQPVS---LDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTT   87 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEETT-TEEEE-ESSTTSS-EE--------S-----EEEEEEEETT-EEEEE-EETT-EEEEES
T ss_pred             CCceEEEEEecCCEEEEEecC-CEEEE-ECCCCccccccc---cCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEec
Confidence            358889999966666777664 44321 111111000000   0000000123566777543 33444 4444 334444


Q ss_pred             CCcceeeeee---cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE-EEeCCCCCeeEEEEccCCCEEEEEeCC
Q 020798          103 PTATCLKTLI---GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK-VLPAHSDPVTAVDFNRDGTMIVTSSYD  178 (321)
Q Consensus       103 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d  178 (321)
                      +.++.-..+.   ........+....++...+ ++..|.|+. ....++.-+ ........+..+.-+++|++++++...
T Consensus        88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G  165 (302)
T PF14870_consen   88 DGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG  165 (302)
T ss_dssp             STTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred             CCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence            4444333221   1122223333323332333 344454432 112222111 223334667888889999988777666


Q ss_pred             CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC-CCCcEEEE-EeccCCceeEEEeEEEecC
Q 020798          179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY-STGKILKT-YTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       179 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~  256 (321)
                      ..+.-||.-...- ..........+..+.|.|++...+++ ..|.|+.=+. ...+.... +.......+.+......++
T Consensus       166 ~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~  243 (302)
T PF14870_consen  166 NFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP  243 (302)
T ss_dssp             SEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred             cEEEEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence            6666777532211 11112234678999999998776644 7788887762 22221111 1111112222222333455


Q ss_pred             CeEEEEeCCCCeEEEEEcccceEEEEec---CCCCCeEEEEecCCCceEEEEeecCCccEEEc
Q 020798          257 GKYIVSGSEDSCVYLWELQSRKVVQKLE---GHTDPVISVASHPTENIIASGALDNDRTVKIW  316 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw  316 (321)
                      ++..++|+. |.+ +.....++.=++.+   .-...+..+.|.+..+-+|.|   ++|.+--|
T Consensus       244 ~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG---~~G~ll~~  301 (302)
T PF14870_consen  244 NEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG---QDGVLLRY  301 (302)
T ss_dssp             S-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE----STTEEEEE
T ss_pred             CCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC---CCcEEEEe
Confidence            666666554 444 34555555433332   223457889998778888887   45766544

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=94.06  E-value=3.1  Score=34.82  Aligned_cols=108  Identities=12%  Similarity=0.104  Sum_probs=50.7

Q ss_pred             CCCEEEEeeCC-----CcEEEEecCCCEE---EEEEeCCCCCe--eEEEEccCCCEEEEEeC-----CCeEEEEeCCCCc
Q 020798          126 QSNMIVSGAFD-----ETVRIWDVKTGKC---LKVLPAHSDPV--TAVDFNRDGTMIVTSSY-----DGLCRIWDASTGH  190 (321)
Q Consensus       126 ~~~~l~~~~~d-----g~i~~wd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~  190 (321)
                      ++..++.|+.+     ..+..+|+.+.+-   ...+..-..+.  .+++. -++.+++.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            34555666654     2466677765542   11221111111  12222 24566666664     2357788887654


Q ss_pred             eeeeeccCCCCCeEEEEEccCCCEEEEEecCC----eEEEEeCCCCcE
Q 020798          191 CMKTLIDDENPPVSFVKFSPNGKFILVGTLDN----TLRLWNYSTGKI  234 (321)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~----~i~i~d~~~~~~  234 (321)
                      -...................++++.+.|+.++    .+.+||..+.+-
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            22111001111112222334666777777653    356888877553

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.48  E-value=6.3  Score=36.50  Aligned_cols=150  Identities=12%  Similarity=0.138  Sum_probs=88.1

Q ss_pred             CCEEEEecCCceEEEeeccccCCCCCCC-C-------Cc----cccc--ccccccEEEEEECC--CCCEEEEEeCCCcEE
Q 020798           35 GRLLASSSADKTLLTYSLSSISNSDSTP-P-------SP----LQKF--TGHEQGVSDLVFSS--DSRFLVSASDDKTIR   98 (321)
Q Consensus        35 g~~l~~~~~d~~v~~~~~~~~~~~~~~~-~-------~~----~~~~--~~h~~~i~~~~~~~--~~~~l~~~~~d~~i~   98 (321)
                      .++|.++. .+.|.+|+........... .       ..    ....  ..-...|+.|....  ....|+.+.+||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            55666654 7889999876644311100 0       00    0000  00112356665543  446888999999999


Q ss_pred             EEecCC-------c----c---------eeeeeecCcccEEEEEEC--CCCCEEEEeeCCCcEEEEecCCC--EE-EEEE
Q 020798           99 LWDVPT-------A----T---------CLKTLIGHTNYVFCVNFN--PQSNMIVSGAFDETVRIWDVKTG--KC-LKVL  153 (321)
Q Consensus        99 iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~--~~-~~~~  153 (321)
                      +|.++.       .    .         +... ..-...+++++++  ...++||+++....|.||-....  +. ...-
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            996521       0    0         0001 1123467889998  77788888888888887754331  11 1111


Q ss_pred             eCCCCCeeEEEEccCC---C---EEEEEeCCCeEEEEeC
Q 020798          154 PAHSDPVTAVDFNRDG---T---MIVTSSYDGLCRIWDA  186 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~~~d~  186 (321)
                      ..+...|.+++|.++.   .   .+++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1255678889987643   2   6778888999888776

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.48  E-value=4.6  Score=34.86  Aligned_cols=192  Identities=14%  Similarity=0.180  Sum_probs=88.2

Q ss_pred             CCEEEEee-CCCcEEEEecCC----CEEEEEEeC---CC----CCeeEEEEccCCCEEEEEe--C----CCeEEEEeCCC
Q 020798          127 SNMIVSGA-FDETVRIWDVKT----GKCLKVLPA---HS----DPVTAVDFNRDGTMIVTSS--Y----DGLCRIWDAST  188 (321)
Q Consensus       127 ~~~l~~~~-~dg~i~~wd~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~--~----dg~i~~~d~~~  188 (321)
                      .++|+..+ .++.|+++|+.+    .+..+.+..   +.    .....+-.-|+|+.++++-  .    -|-+.+.|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            45666555 778999999873    344444432   11    1223344568888888752  2    24577788776


Q ss_pred             CceeeeeccCCC--CCeEEEEEccCCCEEEEEec--------------------CCeEEEEeCCCCcEEEEEeccCCcee
Q 020798          189 GHCMKTLIDDEN--PPVSFVKFSPNGKFILVGTL--------------------DNTLRLWNYSTGKILKTYTGHTNSKY  246 (321)
Q Consensus       189 ~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~~~  246 (321)
                      .+..........  ..-..+.+.|..+.++++..                    ..++.+||+.+.+.++.+.-......
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            655554433222  22345677888887777542                    24699999999999998865433333


Q ss_pred             EEEeEEE-ecC-CeEEEEeCCCCeEEEE-Ecccce----EEEEecC-----C------------CCCeEEEEecCCCceE
Q 020798          247 CISSTFS-VTN-GKYIVSGSEDSCVYLW-ELQSRK----VVQKLEG-----H------------TDPVISVASHPTENII  302 (321)
Q Consensus       247 ~~~~~~~-~~~-~~~l~~~~~dg~i~vw-d~~~~~----~~~~~~~-----h------------~~~v~~~~~~p~~~~l  302 (321)
                      .+...|. .++ ..-++.+....+|..| ....++    .+..+..     -            ..=|+++..|.|.++|
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL  326 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL  326 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence            3333332 222 2233333344444433 323332    1111111     0            1236899999999998


Q ss_pred             EEEeecCCccEEEcccc
Q 020798          303 ASGALDNDRTVKIWTQE  319 (321)
Q Consensus       303 ~s~~~d~~~~i~iw~~~  319 (321)
                      -....- .|.|+-||+.
T Consensus       327 Yvs~W~-~GdvrqYDIS  342 (461)
T PF05694_consen  327 YVSNWL-HGDVRQYDIS  342 (461)
T ss_dssp             EEEETT-TTEEEEEE-S
T ss_pred             EEEccc-CCcEEEEecC
Confidence            877663 5889999875

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.43  E-value=3.4  Score=33.18  Aligned_cols=197  Identities=12%  Similarity=0.087  Sum_probs=117.6

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL  153 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  153 (321)
                      ..-..++-.|||..-+++...+.|--.|..+++....-.+....-..+...||+..-++-+.. -|.-.|-++.+. ..+
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f  139 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRF  139 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEe
Confidence            345678889999888888888888888888888665555566666788889998766654333 455566555442 222


Q ss_pred             e----CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          154 P----AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       154 ~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                      +    ..........|.+.|++-+++.. |..--.|...+ .++.+..........++..|+|..-++.-.++.|-..|.
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp  217 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDP  217 (353)
T ss_pred             ecccccCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccc
Confidence            2    22345677889999987777642 11111111111 122222223344566888999998888777888888887


Q ss_pred             CCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          230 STGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      .++... .+.............+..+-|+.-++-...+.+.-||-.
T Consensus       218 ~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs  262 (353)
T COG4257         218 FAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPS  262 (353)
T ss_pred             ccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCcc
Confidence            766322 222111111112223444556666666666667666654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.14  E-value=0.23  Score=45.90  Aligned_cols=130  Identities=13%  Similarity=0.150  Sum_probs=62.7

Q ss_pred             CcEEEEecCCcce-eeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecC--CCEEEE-----EEeCCCCCeeEEEE
Q 020798           95 KTIRLWDVPTATC-LKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK--TGKCLK-----VLPAHSDPVTAVDF  165 (321)
Q Consensus        95 ~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~--~~~~~~-----~~~~~~~~v~~~~~  165 (321)
                      +-+++-+..+... -..+++..+.+-.+.|.... ..+.  -.-|.+.|||+.  .|+...     ........+.-+.|
T Consensus       111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w  188 (1283)
T KOG1916|consen  111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW  188 (1283)
T ss_pred             hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence            4455555443321 01124455556666664321 1111  233667888864  333222     22223344455666


Q ss_pred             cc---CCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEE-----------EEEccCCCEEEEEecCCeEEEEe
Q 020798          166 NR---DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSF-----------VKFSPNGKFILVGTLDNTLRLWN  228 (321)
Q Consensus       166 ~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-----------~~~~~~g~~l~~~~~d~~i~i~d  228 (321)
                      .|   +..++..+-.++.+++........  .++..|...+..           ...+|||..++.+..||.+++|.
T Consensus       189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q  263 (1283)
T KOG1916|consen  189 CPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ  263 (1283)
T ss_pred             cccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence            65   444555666778888766543211  222223222221           23566777776666676666665

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.04  E-value=1.3  Score=34.74  Aligned_cols=67  Identities=15%  Similarity=0.378  Sum_probs=47.6

Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeeee------cc-------CCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 020798          165 FNRDGTMIVTSSYDGLCRIWDASTGHCMKTL------ID-------DENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST  231 (321)
Q Consensus       165 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------~~-------~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~  231 (321)
                      +..++.++++.+.+|.+++||+.+.+.+...      ..       .....|..+.++.+|.-+++ -.+|....|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEecccc
Confidence            4456788999999999999999887654322      22       23456778888888876655 4467788888654


Q ss_pred             C
Q 020798          232 G  232 (321)
Q Consensus       232 ~  232 (321)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.99  E-value=0.015  Score=49.56  Aligned_cols=147  Identities=16%  Similarity=0.238  Sum_probs=96.2

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEE-EEEeCCCcEEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL-VSASDDKTIRL   99 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-~~~~~d~~i~i   99 (321)
                      .|...-....|-|++.-++.+..+..+..||..+....+..          ..+...+++|..++..+ +.+-..+.+.+
T Consensus        32 aalv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n----------~tg~aldm~wDkegdvlavlAek~~piyl  101 (615)
T KOG2247|consen   32 AALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELN----------PTGKALDMAWDKEGDVLAVLAEKTGPIYL  101 (615)
T ss_pred             hhccccceeeEecCCCceehhhhhhHHHhhhhhcceecccC----------CchhHhhhhhccccchhhhhhhcCCCeee
Confidence            34445556778888877888888999998876543221111          12334567788777654 45667789999


Q ss_pred             EecCCcce--eeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC
Q 020798          100 WDVPTATC--LKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY  177 (321)
Q Consensus       100 wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  177 (321)
                      ||+.+...  +..-..|....  +.|++....++.+...|.+.+++..+.+.....-.|...++++++.+.+. .+.++.
T Consensus       102 wd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dc  178 (615)
T KOG2247|consen  102 WDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDC  178 (615)
T ss_pred             chhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCc
Confidence            99866432  11111122222  56788777888888899999999877665555555888899999988764 444444


Q ss_pred             CCe
Q 020798          178 DGL  180 (321)
Q Consensus       178 dg~  180 (321)
                      |..
T Consensus       179 d~~  181 (615)
T KOG2247|consen  179 DNT  181 (615)
T ss_pred             HHH
Confidence            443

>PLN02193 nitrile-specifier protein

Probab=92.88  E-value=6.5  Score=34.95  Aligned_cols=149  Identities=11%  Similarity=0.115  Sum_probs=70.3

Q ss_pred             CCEEEEeeCC-----CcEEEEecCCCEEEEEEeCC--CCC--eeEEEEccCCCEEEEEeCCC-----eEEEEeCCCCcee
Q 020798          127 SNMIVSGAFD-----ETVRIWDVKTGKCLKVLPAH--SDP--VTAVDFNRDGTMIVTSSYDG-----LCRIWDASTGHCM  192 (321)
Q Consensus       127 ~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~--~~~--v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~  192 (321)
                      +..++.|+.+     ..+..||+.+.+-...-+..  ..+  -.+++ .-++.+++.|+.++     .+..||+.+.+-.
T Consensus       229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            4555666654     35778888776432211110  111  11222 22455666676543     4667777654322


Q ss_pred             eeeccC--CCCCeEEEEEccCCCEEEEEecC----CeEEEEeCCCCcEEEEEec-c-CCceeEEEeEEEecCCeEEEEeC
Q 020798          193 KTLIDD--ENPPVSFVKFSPNGKFILVGTLD----NTLRLWNYSTGKILKTYTG-H-TNSKYCISSTFSVTNGKYIVSGS  264 (321)
Q Consensus       193 ~~~~~~--~~~~~~~~~~~~~g~~l~~~~~d----~~i~i~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~  264 (321)
                      ......  ...........-+++.++.++.+    ..+.+||+.+.+....... . ..+......  ...++.+++.|+
T Consensus       308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~--~~~~~~iyv~GG  385 (470)
T PLN02193        308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS--AAVGKHIVIFGG  385 (470)
T ss_pred             eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE--EEECCEEEEECC
Confidence            110000  00000111112356777777654    4689999887654332211 0 011111111  123567777777


Q ss_pred             CC--------------CeEEEEEcccce
Q 020798          265 ED--------------SCVYLWELQSRK  278 (321)
Q Consensus       265 ~d--------------g~i~vwd~~~~~  278 (321)
                      ..              ..+.+||+.+.+
T Consensus       386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~  413 (470)
T PLN02193        386 EIAMDPLAHVGPGQLTDGTFALDTETLQ  413 (470)
T ss_pred             ccCCccccccCccceeccEEEEEcCcCE
Confidence            53              247788887654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.80  E-value=5.2  Score=33.59  Aligned_cols=112  Identities=10%  Similarity=0.194  Sum_probs=62.3

Q ss_pred             CcccEEEEEECCCCCEEEEecCCce------EEEeeccccCC-CCCCCCCccccccccc--------ccEEEEEECCCCC
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKT------LLTYSLSSISN-SDSTPPSPLQKFTGHE--------QGVSDLVFSSDSR   86 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~------v~~~~~~~~~~-~~~~~~~~~~~~~~h~--------~~i~~~~~~~~~~   86 (321)
                      ..++++.+.+.|++..+++.+.++.      +..+.+..... ...........+..-.        ...-+|++.+++.
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            4568899999976666666666776      54444432100 0000000000111111        1344678877888


Q ss_pred             EEEEEeCC------CcEEEEecCCcceeeee---------------ecCcccEEEEEECCCCCEEEEee
Q 020798           87 FLVSASDD------KTIRLWDVPTATCLKTL---------------IGHTNYVFCVNFNPQSNMIVSGA  134 (321)
Q Consensus        87 ~l~~~~~d------~~i~iwd~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~  134 (321)
                      ++++.-.+      ..|..++.. ++....+               ...+...-.++++|+|+.|+++.
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            87776666      678888765 4433222               12344578999999999666654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.78  E-value=6  Score=34.32  Aligned_cols=148  Identities=13%  Similarity=0.149  Sum_probs=81.5

Q ss_pred             CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC----CCCEEEEEeCCCcEEEEecCCc--c-
Q 020798           34 DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS----DSRFLVSASDDKTIRLWDVPTA--T-  106 (321)
Q Consensus        34 ~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~--~-  106 (321)
                      +...|++||..|.+++|+......   .+. .+..-..-+.+|-.+..-+    .....++.-.-..+.+|.+...  . 
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~---~~~-~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~  111 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEF---QPE-DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV  111 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCC---CCc-cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc
Confidence            346899999999999997633211   111 1111122345666665432    1222222344566777776211  1 


Q ss_pred             ------eeeeeecCc--ccEEEEEECC----C-CCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEE
Q 020798          107 ------CLKTLIGHT--NYVFCVNFNP----Q-SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV  173 (321)
Q Consensus       107 ------~~~~~~~~~--~~v~~~~~~~----~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  173 (321)
                            .+..+..|.  .....+++-|    . ..++..-+.||.+.+|+-+.-.....++. .--...+.|.+..+.|+
T Consensus       112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfv  190 (418)
T PF14727_consen  112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFV  190 (418)
T ss_pred             ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEE
Confidence                  112222222  1223333322    2 35677789999999998654433333332 11123467888888899


Q ss_pred             EEeCCCeEEEEeC
Q 020798          174 TSSYDGLCRIWDA  186 (321)
Q Consensus       174 ~~~~dg~i~~~d~  186 (321)
                      +++.+..+..|..
T Consensus       191 t~sss~~l~~Yky  203 (418)
T PF14727_consen  191 TASSSWTLECYKY  203 (418)
T ss_pred             EecCceeEEEecH
Confidence            9998888888754

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.70  E-value=0.92  Score=38.87  Aligned_cols=159  Identities=13%  Similarity=0.122  Sum_probs=87.0

Q ss_pred             ccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeee-ee-c-Cc---ccEE-EEEECCCCCEEEEeeCCCcEEEE-e
Q 020798           72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKT-LI-G-HT---NYVF-CVNFNPQSNMIVSGAFDETVRIW-D  143 (321)
Q Consensus        72 h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~-~-~~---~~v~-~~~~~~~~~~l~~~~~dg~i~~w-d  143 (321)
                      ....+..+-..|||+.+..-+. .++.++++.+...... +. . ..   ..|. .+..-..|..++....||.|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            3455677888999998876544 6788888866542211 10 0 00   0011 11112234557778888888766 5


Q ss_pred             cCCCE-----EEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE
Q 020798          144 VKTGK-----CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG  218 (321)
Q Consensus       144 ~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  218 (321)
                      .+.+.     .++.++....++..+.-..+.+-+++-+..|++.++.....+.....  ..-..+..++++|.+.++++-
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~~~~~~~~~Sp~~~~Ll~e  375 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAYQAPQLVAMSPNQAYLLSE  375 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhhcCcceeeeCcccchheee
Confidence            44322     11222222233333322223345777788888887765443322111  111234568999999988753


Q ss_pred             ecCCeEEEEeCCCCcE
Q 020798          219 TLDNTLRLWNYSTGKI  234 (321)
Q Consensus       219 ~~d~~i~i~d~~~~~~  234 (321)
                       ..|.++++.+.+..+
T Consensus       376 -~~gki~~~~l~Nr~P  390 (733)
T COG4590         376 -DQGKIRLAQLENRNP  390 (733)
T ss_pred             -cCCceEEEEecCCCC
Confidence             456799998876543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.92  E-value=3.8  Score=32.56  Aligned_cols=139  Identities=16%  Similarity=0.309  Sum_probs=73.9

Q ss_pred             EEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-C--CcEEEEecCCC--EEE-E----EEeCCCCCeeEEEEcc
Q 020798           98 RLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-D--ETVRIWDVKTG--KCL-K----VLPAHSDPVTAVDFNR  167 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~~wd~~~~--~~~-~----~~~~~~~~v~~~~~~~  167 (321)
                      .+||+.+++...-.......+.+-.+-+||+.+.+|+. +  ..+++++....  .+. .    .+.... -=.+..--|
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R-WYpT~~~L~  127 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGR-WYPTATTLP  127 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCC-ccccceECC
Confidence            47888877642221222333344456789999988864 2  34777775430  000 0    011111 111234457


Q ss_pred             CCCEEEEEeCCC-eEEEEeCCCC--ceee-eeccC-----CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          168 DGTMIVTSSYDG-LCRIWDASTG--HCMK-TLIDD-----ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       168 ~~~~l~~~~~dg-~i~~~d~~~~--~~~~-~~~~~-----~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      ||+.++.|+... +.-+|..+..  .... .+...     ...-...+...|+|+.++.+..+  -.|||..+.+.++.+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence            899988887764 3445554221  1111 11111     11112356788999998877654  466788877766665


Q ss_pred             e
Q 020798          239 T  239 (321)
Q Consensus       239 ~  239 (321)
                      .
T Consensus       206 P  206 (243)
T PF07250_consen  206 P  206 (243)
T ss_pred             C
Confidence            4

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.62  E-value=5.8  Score=31.55  Aligned_cols=144  Identities=16%  Similarity=0.226  Sum_probs=76.3

Q ss_pred             EEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC-C--CeEEEEeCCCCceeeeec-----cCCCCCeEEEEEccC
Q 020798          140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-D--GLCRIWDASTGHCMKTLI-----DDENPPVSFVKFSPN  211 (321)
Q Consensus       140 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~  211 (321)
                      .+||+.+++....-.....-+.+-.+.++|+++.+|+. +  ..+++++.........+.     .....-......-||
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            47888776543222222333444567789999988874 3  357888764300000110     011112233556789


Q ss_pred             CCEEEEEecCC-eEEEEeCCC--CcEEEE-Eecc---CCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec
Q 020798          212 GKFILVGTLDN-TLRLWNYST--GKILKT-YTGH---TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE  284 (321)
Q Consensus       212 g~~l~~~~~d~-~i~i~d~~~--~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  284 (321)
                      |+.|+.|+... ...+|....  ...... +...   .....-.-..+..++|++++.+..+.  .|||..+.+.++.+.
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLP  206 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCC
Confidence            99999988764 455555422  111111 1110   01111112344568999998887654  467888877766665


Q ss_pred             C
Q 020798          285 G  285 (321)
Q Consensus       285 ~  285 (321)
                      .
T Consensus       207 ~  207 (243)
T PF07250_consen  207 D  207 (243)
T ss_pred             C
Confidence            4

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.61  E-value=5.4  Score=35.05  Aligned_cols=135  Identities=19%  Similarity=0.249  Sum_probs=77.7

Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCC-------EEEEEecCCeEEEEeCCC-CcEEEEE
Q 020798          168 DGTMIV-TSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK-------FILVGTLDNTLRLWNYST-GKILKTY  238 (321)
Q Consensus       168 ~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~l~~~~~d~~i~i~d~~~-~~~~~~~  238 (321)
                      +..+++ .++....++-.|+.-|+.+..+.....  + .+.|.|..+       .-++|-++..|--.|.+- +..+...
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~dd--v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD--V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCc--c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            344443 455556677778888887777644332  2 455666421       123455566666666553 2222211


Q ss_pred             eccC-CceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          239 TGHT-NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      .... ....-.++.. .....++|+|+..|-|++||--.-+--..+.+...+|..+..+.+|.++.+.+
T Consensus       555 esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC  622 (776)
T COG5167         555 ESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC  622 (776)
T ss_pred             eehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence            1100 0011111111 13456899999999999999644333445677788999999999999876655

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.04  E-value=9.6  Score=32.98  Aligned_cols=154  Identities=11%  Similarity=0.028  Sum_probs=0.0

Q ss_pred             cccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE
Q 020798           73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV  152 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  152 (321)
                      .+....+..++++.+++.+..-.-++-||-........-......+..+.+.+++..++++...+.+.--|-........
T Consensus       238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~  317 (398)
T PLN00033        238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFD  317 (398)
T ss_pred             ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccc


Q ss_pred             EeCCCCC-----eeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 020798          153 LPAHSDP-----VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW  227 (321)
Q Consensus       153 ~~~~~~~-----v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~  227 (321)
                      +..-...     +.++.|.+++..+++|...-.++--|--..-...............+.|.++++.+++|. +|.|.-|
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~~  396 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLLRY  396 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEEEe

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.68  E-value=4.5  Score=28.59  Aligned_cols=106  Identities=8%  Similarity=0.111  Sum_probs=56.9

Q ss_pred             EEccCCCEEEEEecCCeEEEEeCCCC--------cEEEEEeccCCceeEEEeEEEe--cCCeEEEEeCCCCeEEEEEccc
Q 020798          207 KFSPNGKFILVGTLDNTLRLWNYSTG--------KILKTYTGHTNSKYCISSTFSV--TNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       207 ~~~~~g~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      +|......|++++..++|.|.+....        ..+..+.- ...+.++..-...  .+...|+.|+. ..|..||+..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence            45555566778888888888876432        22333332 2234444433321  23456777765 4688999987


Q ss_pred             ceEEEEecCCCCCeEEEEec---C-CCceEEEEeecCCccEEEccc
Q 020798          277 RKVVQKLEGHTDPVISVASH---P-TENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       277 ~~~~~~~~~h~~~v~~~~~~---p-~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      ..-+. ++.-.+-|+++.+-   . +..+++.|+   +..|.=+|.
T Consensus        83 N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGG---ncsi~Gfd~  124 (136)
T PF14781_consen   83 NSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGG---NCSIQGFDY  124 (136)
T ss_pred             Cchhh-hhhCccceeEEEEEecCCCCCcEEEECc---eEEEEEeCC
Confidence            65443 22233556666552   1 244555553   344444443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.67  E-value=1.3  Score=40.69  Aligned_cols=119  Identities=17%  Similarity=0.235  Sum_probs=73.7

Q ss_pred             cEEEEEEC--CCCCEEEEecCCceEEEeeccccC----CC----CC----CCCCcccccccccccEEEEEEC--CCCCEE
Q 020798           25 AISSVKFS--HDGRLLASSSADKTLLTYSLSSIS----NS----DS----TPPSPLQKFTGHEQGVSDLVFS--SDSRFL   88 (321)
Q Consensus        25 ~v~~~~~s--~~g~~l~~~~~d~~v~~~~~~~~~----~~----~~----~~~~~~~~~~~h~~~i~~~~~~--~~~~~l   88 (321)
                      .|+.+...  -+.+.|+.|..||.|.+|....+.    ..    ..    ....|...+. -......++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            34444443  245789999999999999764422    11    00    0111222222 23578899998  778889


Q ss_pred             EEEeCCCcEEEEecCCc--ce-eeeeecCcccEEEEEECCCC---C---EEEEeeCCCcEEEEec
Q 020798           89 VSASDDKTIRLWDVPTA--TC-LKTLIGHTNYVFCVNFNPQS---N---MIVSGAFDETVRIWDV  144 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~~--~~-~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~~wd~  144 (321)
                      |+++....|.||-....  +. ...-..+...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            98888888888765332  11 11111244557788886543   2   6788899999888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PLN02153 epithiospecifier protein

Probab=90.50  E-value=9.7  Score=32.15  Aligned_cols=63  Identities=16%  Similarity=0.168  Sum_probs=31.0

Q ss_pred             CCCEEEEEeCC-------CcEEEEecCCcceeeeee-cC--cc---cEEEEEECCCCCEEEEeeCC-----CcEEEEecC
Q 020798           84 DSRFLVSASDD-------KTIRLWDVPTATCLKTLI-GH--TN---YVFCVNFNPQSNMIVSGAFD-----ETVRIWDVK  145 (321)
Q Consensus        84 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~-~~--~~---~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~  145 (321)
                      +++.++.|+.+       ..+.+||+.+.+...... +.  ..   ....+.+  ++..++.|+.+     ..+.+||++
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            34555666642       257788877654322110 00  00   1111222  34556666643     257788887


Q ss_pred             CCE
Q 020798          146 TGK  148 (321)
Q Consensus       146 ~~~  148 (321)
                      +.+
T Consensus       110 t~~  112 (341)
T PLN02153        110 KNE  112 (341)
T ss_pred             CCE
Confidence            654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.30  E-value=3.7  Score=30.74  Aligned_cols=30  Identities=17%  Similarity=0.313  Sum_probs=24.0

Q ss_pred             cEEEEEECCCC------CEEEEEeCCCcEEEEecCC
Q 020798           75 GVSDLVFSSDS------RFLVSASDDKTIRLWDVPT  104 (321)
Q Consensus        75 ~i~~~~~~~~~------~~l~~~~~d~~i~iwd~~~  104 (321)
                      .+..++|||.|      -.|++-+.++.|.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999954      3677888999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.22  E-value=12  Score=32.59  Aligned_cols=152  Identities=13%  Similarity=0.199  Sum_probs=84.9

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCcc---eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE---
Q 020798           78 DLVFSSDSRFLVSASDDKTIRLWDVPTAT---CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK---  151 (321)
Q Consensus        78 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~---  151 (321)
                      .+-|....+.|++ ...|.+.=|-.....   ++.--....++|.++.|++|++.++.--.+..|.+++....+...   
T Consensus        27 gvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   27 GVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             ceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence            3445444444443 334445555443221   111112345589999999999999999999999999875443221   


Q ss_pred             -EEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEe
Q 020798          152 -VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT--LDNTLRLWN  228 (321)
Q Consensus       152 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~--~d~~i~i~d  228 (321)
                       ..+.....|....|..+ .-++.....| +-+|-....+...+....+...+....|.++.+.++.++  ..+.+.=+.
T Consensus       106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~  183 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH  183 (657)
T ss_pred             HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence             12233455888888866 4455444444 444443222111222334456688888999887765544  344455455


Q ss_pred             CCCC
Q 020798          229 YSTG  232 (321)
Q Consensus       229 ~~~~  232 (321)
                      ++++
T Consensus       184 ~~~~  187 (657)
T KOG2377|consen  184 FRAG  187 (657)
T ss_pred             Eeec
Confidence            4443

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=89.95  E-value=11  Score=31.89  Aligned_cols=42  Identities=12%  Similarity=0.155  Sum_probs=20.7

Q ss_pred             eEEEEEcccceEEEEecCCCCCe-EEEEecCCCceEEEEeecCC
Q 020798          268 CVYLWELQSRKVVQKLEGHTDPV-ISVASHPTENIIASGALDND  310 (321)
Q Consensus       268 ~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~p~~~~l~s~~~d~~  310 (321)
                      .+.+||..+.+-. .+.....+. ...+..-++++++.|+.+.+
T Consensus       291 ~~e~yd~~~~~W~-~~~~lp~~~~~~~~~~~~~~iyv~GG~~~~  333 (346)
T TIGR03547       291 SSEVYALDNGKWS-KVGKLPQGLAYGVSVSWNNGVLLIGGENSG  333 (346)
T ss_pred             EeeEEEecCCccc-ccCCCCCCceeeEEEEcCCEEEEEeccCCC
Confidence            4668887654321 111111111 22233446888888886543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.82  E-value=11  Score=31.73  Aligned_cols=230  Identities=18%  Similarity=0.233  Sum_probs=111.6

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCcce---eeee----ecCcccEEEEEECCC---CCEEEEeeC-C--------
Q 020798           76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATC---LKTL----IGHTNYVFCVNFNPQ---SNMIVSGAF-D--------  136 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~-d--------  136 (321)
                      ...|+|.|+|+++++ ...|.|++++ ..+..   +..+    .........++++|+   ..+|..... .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            578999999987665 5699999999 33332   2221    123345789999994   334433322 1        


Q ss_pred             CcEEEEecCCC--E------EEEEEeC---CCCCeeEEEEccCCCEEEEEeCCCe-------------EEEEeCCCCcee
Q 020798          137 ETVRIWDVKTG--K------CLKVLPA---HSDPVTAVDFNRDGTMIVTSSYDGL-------------CRIWDASTGHCM  192 (321)
Q Consensus       137 g~i~~wd~~~~--~------~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~~~d~~~~~~~  192 (321)
                      ..|.-|....+  .      .+..++.   ....-..+.|.|++.++++.+..+.             |.-.+.. +...
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p  160 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP  160 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence            23444444333  1      1112232   2334567999999977666554332             1111211 1100


Q ss_pred             -------------eeeccCCCCCeEEEEEccC-CCEEEEE-ecCC--eEEEEeCC--------C------C---------
Q 020798          193 -------------KTLIDDENPPVSFVKFSPN-GKFILVG-TLDN--TLRLWNYS--------T------G---------  232 (321)
Q Consensus       193 -------------~~~~~~~~~~~~~~~~~~~-g~~l~~~-~~d~--~i~i~d~~--------~------~---------  232 (321)
                                   ..+.... .....++|+|. |+++++= +.+.  .|.+....        .      +         
T Consensus       161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~  239 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC  239 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred             CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence                         0000000 12346889998 6655442 2222  23332110        0      0         


Q ss_pred             ----cEEEEEeccCCceeEEEeEEEe------cCCeEEEEeCCCCeEEEEEcccceEEE---E-ecCCCCCeEEEEecCC
Q 020798          233 ----KILKTYTGHTNSKYCISSTFSV------TNGKYIVSGSEDSCVYLWELQSRKVVQ---K-LEGHTDPVISVASHPT  298 (321)
Q Consensus       233 ----~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~dg~i~vwd~~~~~~~~---~-~~~h~~~v~~~~~~p~  298 (321)
                          .++..+..|..   .....+..      -.+.++++.-..+.|....+.....+.   . +.....++.++++.||
T Consensus       240 ~~~~~P~~~~~~~~a---p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD  316 (331)
T PF07995_consen  240 PGFVPPVFAYPPHSA---PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD  316 (331)
T ss_dssp             TTS---SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred             CCcCccceeecCccc---cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence                01122222211   11222221      246777777777788888876443221   1 2344558999999999


Q ss_pred             CceEEEEeecCCccEE
Q 020798          299 ENIIASGALDNDRTVK  314 (321)
Q Consensus       299 ~~~l~s~~~d~~~~i~  314 (321)
                      |.++++-.  .+|.|.
T Consensus       317 G~Lyv~~d--~~G~iy  330 (331)
T PF07995_consen  317 GALYVSDD--SDGKIY  330 (331)
T ss_dssp             SEEEEEE---TTTTEE
T ss_pred             CeEEEEEC--CCCeEe
Confidence            99988754  456653

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.68  E-value=12  Score=32.08  Aligned_cols=13  Identities=8%  Similarity=0.100  Sum_probs=8.8

Q ss_pred             cCCCceEEEEeec
Q 020798          296 HPTENIIASGALD  308 (321)
Q Consensus       296 ~p~~~~l~s~~~d  308 (321)
                      .-++.+++.|+..
T Consensus       341 ~~~~~iyv~GG~~  353 (376)
T PRK14131        341 SWNNGVLLIGGET  353 (376)
T ss_pred             EeCCEEEEEcCCC
Confidence            3457788888754

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.43  E-value=1.9  Score=22.78  Aligned_cols=28  Identities=7%  Similarity=0.285  Sum_probs=17.7

Q ss_pred             cccEEEEEECCCCCEEEEE-eCC--CcEEEE
Q 020798           73 EQGVSDLVFSSDSRFLVSA-SDD--KTIRLW  100 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~-~~d--~~i~iw  100 (321)
                      ...-....|+|||+.|+-+ ..+  |...||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3455678999999988754 444  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.43  E-value=2.2  Score=38.73  Aligned_cols=79  Identities=32%  Similarity=0.421  Sum_probs=43.7

Q ss_pred             CCCCEEEEecCCceEEEeeccccCCCCC------CCCC----ccccc--------ccccccEEEEEECC----CCCEEEE
Q 020798           33 HDGRLLASSSADKTLLTYSLSSISNSDS------TPPS----PLQKF--------TGHEQGVSDLVFSS----DSRFLVS   90 (321)
Q Consensus        33 ~~g~~l~~~~~d~~v~~~~~~~~~~~~~------~~~~----~~~~~--------~~h~~~i~~~~~~~----~~~~l~~   90 (321)
                      ++...++.+..||.+.............      ....    .+..+        .........++++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667788888899888776654210000      0000    00000        01123455566666    6779999


Q ss_pred             EeCCCcEEEEecCCcceeeee
Q 020798           91 ASDDKTIRLWDVPTATCLKTL  111 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~~~~~~~  111 (321)
                      -+.|+.+|+||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999885543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=89.19  E-value=15  Score=32.37  Aligned_cols=53  Identities=15%  Similarity=0.258  Sum_probs=35.1

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEecCCCEE--EEEEe-----CCCCCeeEEEEccCC
Q 020798          117 YVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKC--LKVLP-----AHSDPVTAVDFNRDG  169 (321)
Q Consensus       117 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~-----~~~~~v~~~~~~~~~  169 (321)
                      ..+.++|.|+++.|++--..|.|++++..++..  +..++     ........++++|+-
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            457889999998777654469999997654432  21111     124557889999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK13684 Ycf48-like protein; Provisional

Probab=89.15  E-value=13  Score=31.45  Aligned_cols=156  Identities=12%  Similarity=0.108  Sum_probs=81.5

Q ss_pred             CCCeeEEEEccCCCEEEEEeCCCeEEE-EeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEE
Q 020798          157 SDPVTAVDFNRDGTMIVTSSYDGLCRI-WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKIL  235 (321)
Q Consensus       157 ~~~v~~~~~~~~~~~l~~~~~dg~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~  235 (321)
                      ...+..+.+.|++..+ ..+..|.+.. +|- .++.-..........+..+.+.++++.++++ ..|.+.+=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v-~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYV-AVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEE-EEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            3467888999987655 4444555432 221 2222222223334567888899999876654 4566543223333322


Q ss_pred             EEEeccCC-ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec---CCCCCeEEEEecCCCceEEEEeecCCc
Q 020798          236 KTYTGHTN-SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE---GHTDPVISVASHPTENIIASGALDNDR  311 (321)
Q Consensus       236 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~~~d~~~  311 (321)
                      ........ ....+......+++..++ ++.+|.+. .....++.-....   .-......+.|..+++.+++|.   .|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~---~G  323 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ---RG  323 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC---Cc
Confidence            22111100 111122222334556555 44567654 3444444322222   2234578888888888888873   57


Q ss_pred             cEEEccccc
Q 020798          312 TVKIWTQEK  320 (321)
Q Consensus       312 ~i~iw~~~~  320 (321)
                      .|--|+-..
T Consensus       324 ~il~~~~~~  332 (334)
T PRK13684        324 VLLRYVGSA  332 (334)
T ss_pred             eEEEecCCC
Confidence            887776544

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.10  E-value=14  Score=32.07  Aligned_cols=152  Identities=11%  Similarity=0.141  Sum_probs=86.3

Q ss_pred             EEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCccee
Q 020798           29 VKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL  108 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  108 (321)
                      +-|...++ .+.+...|.+.-|-.....     +.-++......+++|.++.|++|.+.||.--.+.+|.+++....+..
T Consensus        28 vFfDDaNk-qlfavrSggatgvvvkgpn-----dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~  101 (657)
T KOG2377|consen   28 VFFDDANK-QLFAVRSGGATGVVVKGPN-----DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ  101 (657)
T ss_pred             eeeccCcc-eEEEEecCCeeEEEEeCCC-----CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence            44443333 3333445556666554322     11122222345679999999999999999999999999987332221


Q ss_pred             ----eeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEccCCCEEEEEe--CCCeE
Q 020798          109 ----KTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNRDGTMIVTSS--YDGLC  181 (321)
Q Consensus       109 ----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i  181 (321)
                          ...+..+..|....|... ..++.-...| +-+|..... +.++..+.|...|.=..|+++.+.++.++  ..+++
T Consensus       102 l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l  179 (657)
T KOG2377|consen  102 LEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL  179 (657)
T ss_pred             hHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence                122333455778888765 3444444333 445544322 22344556777777788888877544333  34444


Q ss_pred             EEEeCCC
Q 020798          182 RIWDAST  188 (321)
Q Consensus       182 ~~~d~~~  188 (321)
                      .=+-+++
T Consensus       180 npf~~~~  186 (657)
T KOG2377|consen  180 NPFHFRA  186 (657)
T ss_pred             ccEEEee
Confidence            4343333

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.89  E-value=10  Score=33.53  Aligned_cols=26  Identities=12%  Similarity=0.112  Sum_probs=19.2

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEE
Q 020798          117 YVFCVNFNPQSNMIVSGAFDETVRIW  142 (321)
Q Consensus       117 ~v~~~~~~~~~~~l~~~~~dg~i~~w  142 (321)
                      .|..+..++.|..++-++.+|.+.++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            35667788888888888888866554

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.45  E-value=4.2  Score=36.97  Aligned_cols=72  Identities=19%  Similarity=0.378  Sum_probs=44.2

Q ss_pred             CCCCEEEEEeCCCcEEEEecCC----cceee-e----------eec-----------CcccEEEEEECC----CCCEEEE
Q 020798           83 SDSRFLVSASDDKTIRLWDVPT----ATCLK-T----------LIG-----------HTNYVFCVNFNP----QSNMIVS  132 (321)
Q Consensus        83 ~~~~~l~~~~~d~~i~iwd~~~----~~~~~-~----------~~~-----------~~~~v~~~~~~~----~~~~l~~  132 (321)
                      ++...++.+..||.+.......    +.... .          +.+           .......+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4666788888999888776653    11111 0          000           123345566666    6678999


Q ss_pred             eeCCCcEEEEecCCCEEEEEEe
Q 020798          133 GAFDETVRIWDVKTGKCLKVLP  154 (321)
Q Consensus       133 ~~~dg~i~~wd~~~~~~~~~~~  154 (321)
                      .+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999866543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.37  E-value=13  Score=36.42  Aligned_cols=31  Identities=19%  Similarity=0.229  Sum_probs=26.2

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeecc
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLS   53 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~   53 (321)
                      ......++|+|...++|.++..|.+++|-..
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEeccc
Confidence            3456679999999999999999999998544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.05  E-value=5.2  Score=29.97  Aligned_cols=30  Identities=10%  Similarity=0.341  Sum_probs=23.8

Q ss_pred             CCeeEEEEccCC------CEEEEEeCCCeEEEEeCC
Q 020798          158 DPVTAVDFNRDG------TMIVTSSYDGLCRIWDAS  187 (321)
Q Consensus       158 ~~v~~~~~~~~~------~~l~~~~~dg~i~~~d~~  187 (321)
                      ..+.+++|+|.|      -.|++.+.++.+.+|...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            368899999954      267788899999999755

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.96  E-value=7.6  Score=27.50  Aligned_cols=117  Identities=9%  Similarity=0.119  Sum_probs=60.0

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCCCCceee-------eeccCCCCCeEEEEEcc-----CCCEEEEEecCCeEEEEeCC
Q 020798          163 VDFNRDGTMIVTSSYDGLCRIWDASTGHCMK-------TLIDDENPPVSFVKFSP-----NGKFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       163 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-------~~~~~~~~~~~~~~~~~-----~g~~l~~~~~d~~i~i~d~~  230 (321)
                      -.|......|++++..|.|.+++........       .++ ..+..+++++--+     +...|+.|+ ...|..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            3455555578888888889888865322110       111 1233455553322     334555555 5569999987


Q ss_pred             CCcEEEEEeccCCceeEEEe-EEEecCCeEEEEeCCCCeEEEEEcccceEEEEe
Q 020798          231 TGKILKTYTGHTNSKYCISS-TFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      ....+..-..+. ...++.. .+...+..+++ .+.+..|.-||....+.....
T Consensus        82 ~N~d~Fyke~~D-Gvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   82 NNSDLFYKEVPD-GVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             cCchhhhhhCcc-ceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcEEEEEe
Confidence            665443222222 2222322 22222334444 445667777887655555443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.91  E-value=2.8  Score=22.41  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=23.5

Q ss_pred             CCCCEEEEe-eCCCcEEEEecCCCEEEEEEeCC
Q 020798          125 PQSNMIVSG-AFDETVRIWDVKTGKCLKVLPAH  156 (321)
Q Consensus       125 ~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~  156 (321)
                      |++++|+++ ..++.|.++|..+++.+..+...
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            566766554 45789999999888877777653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.55  E-value=28  Score=33.47  Aligned_cols=76  Identities=18%  Similarity=0.242  Sum_probs=44.3

Q ss_pred             EECCCCCEEEEecCCceEEEeeccccCCCCCCCC----CcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 020798           30 KFSHDGRLLASSSADKTLLTYSLSSISNSDSTPP----SPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA  105 (321)
Q Consensus        30 ~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~----~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  105 (321)
                      ++..-|+.+..|+.+|.+..|.+...........    ..... .-++.+|..+...+.-..++ ...|+.+.++++...
T Consensus        21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~-~~~kk~i~~l~~~~~~~~ll-~l~dsqi~~~~l~~~   98 (877)
T KOG2063|consen   21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEK-EFSKKPINKLLVCASLELLL-ILSDSQIAVHKLPEL   98 (877)
T ss_pred             HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhh-hhccchhHHHhhcchhcchh-eecCCcceeeecCcc
Confidence            3445678899999999999998765432222111    00000 11245666666665544444 345677888887665


Q ss_pred             ce
Q 020798          106 TC  107 (321)
Q Consensus       106 ~~  107 (321)
                      +.
T Consensus        99 ~~  100 (877)
T KOG2063|consen   99 EP  100 (877)
T ss_pred             cc
Confidence            54

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=87.52  E-value=2.7  Score=27.44  Aligned_cols=43  Identities=16%  Similarity=0.234  Sum_probs=28.8

Q ss_pred             EeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEE
Q 020798          262 SGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG  305 (321)
Q Consensus       262 ~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  305 (321)
                      .+..+|.+.-||..+++.---+.+-. .-+.++.+||+..++.+
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVA   74 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEE
T ss_pred             cCCCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEE
Confidence            35667889999998887544444433 45999999999987776

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.01  E-value=12  Score=28.83  Aligned_cols=152  Identities=15%  Similarity=0.102  Sum_probs=80.2

Q ss_pred             CCCEEEEEeCCC--cEEEEecCCcceeeeeecCcccEEEEEECCCCCEE-EEeeCCCcEEEEecCCCEEEEEEeCCCCCe
Q 020798           84 DSRFLVSASDDK--TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVKTGKCLKVLPAHSDPV  160 (321)
Q Consensus        84 ~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v  160 (321)
                      +|.++.+.+.-|  .|++||+.+++.+.+..-....++.--...-++.+ .-.-.+|.-..+|.++-+++..+. .++.-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            445565555443  59999999888765433221222211111113332 233567777788877766554443 22233


Q ss_pred             eEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec-cCCCCCeE---EEEEccCCCEEEEEecCCeEEEEeCCCCcEEE
Q 020798          161 TAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI-DDENPPVS---FVKFSPNGKFILVGTLDNTLRLWNYSTGKILK  236 (321)
Q Consensus       161 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~---~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~  236 (321)
                      +.++  .++..++.+....++++-|..+.....++. .....+|.   .+.|- +|...+-.-.+..|...|..+|+.+.
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            3443  456667777777788877766543322221 11122222   22222 56555555555667777777887766


Q ss_pred             EEe
Q 020798          237 TYT  239 (321)
Q Consensus       237 ~~~  239 (321)
                      .+.
T Consensus       211 wid  213 (262)
T COG3823         211 WID  213 (262)
T ss_pred             EEE
Confidence            553

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.01  E-value=21  Score=31.51  Aligned_cols=113  Identities=13%  Similarity=0.107  Sum_probs=60.1

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC------CEEEEEe--
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS------RFLVSAS--   92 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~------~~l~~~~--   92 (321)
                      .....-..|+|.|||++|++--..|.|++++........... .+......-.++...|+++|+-      ++|+..-  
T Consensus        27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~-l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~  105 (454)
T TIGR03606        27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFT-LPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY  105 (454)
T ss_pred             CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeec-CCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence            345677789999999888776546888887643321100000 0000001125788999999873      2444331  


Q ss_pred             --------CCCcEEEEecCCc-------ceee-ee---ecCcccEEEEEECCCCCEEEEeeCC
Q 020798           93 --------DDKTIRLWDVPTA-------TCLK-TL---IGHTNYVFCVNFNPQSNMIVSGAFD  136 (321)
Q Consensus        93 --------~d~~i~iwd~~~~-------~~~~-~~---~~~~~~v~~~~~~~~~~~l~~~~~d  136 (321)
                              ....|.-|.+...       +.+. .+   ..|.  -..+.|.|||.++++.+..
T Consensus       106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence                    1233544554321       1111 11   1233  2467899999876655543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.98  E-value=17  Score=30.51  Aligned_cols=103  Identities=13%  Similarity=0.209  Sum_probs=60.8

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCc------EEEEecCC--C--EEE---E--EEeCCC--------CCeeEEEEccCCCEE
Q 020798          116 NYVFCVNFNPQSNMIVSGAFDET------VRIWDVKT--G--KCL---K--VLPAHS--------DPVTAVDFNRDGTMI  172 (321)
Q Consensus       116 ~~v~~~~~~~~~~~l~~~~~dg~------i~~wd~~~--~--~~~---~--~~~~~~--------~~v~~~~~~~~~~~l  172 (321)
                      +.++.+.+.+++..+++.+.+|.      ++.+++..  +  ..+   .  .+....        ....++++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            34667788766666666676676      55555432  1  001   0  111111        134578887788888


Q ss_pred             EEEeCC------CeEEEEeCCCCceeeeec--------------cCCCCCeEEEEEccCCCEEEEEe
Q 020798          173 VTSSYD------GLCRIWDASTGHCMKTLI--------------DDENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       173 ~~~~~d------g~i~~~d~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      ++.-.+      ..|.-++.. +.....+.              ...+.....++++|+|+.|+++.
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            777777      788888866 44332220              11234578899999999666654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.68  E-value=3.2  Score=21.86  Aligned_cols=32  Identities=19%  Similarity=0.074  Sum_probs=21.3

Q ss_pred             CCCCCeEEEEecCCCceEEEEeecC-CccEEEc
Q 020798          285 GHTDPVISVASHPTENIIASGALDN-DRTVKIW  316 (321)
Q Consensus       285 ~h~~~v~~~~~~p~~~~l~s~~~d~-~~~i~iw  316 (321)
                      .....-...+|+|||+.|+-.+..+ .|.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445667889999999999887532 1556665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.32  E-value=24  Score=31.44  Aligned_cols=27  Identities=7%  Similarity=-0.015  Sum_probs=22.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      .|..+..++.|..++-.+.+|.+.++=
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEc
Confidence            578888999999999999999776653

>PRK13684 Ycf48-like protein; Provisional

Probab=86.17  E-value=19  Score=30.33  Aligned_cols=152  Identities=13%  Similarity=0.121  Sum_probs=74.9

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEE-EecCCCEEEEEEe-CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q 020798          115 TNYVFCVNFNPQSNMIVSGAFDETVRI-WDVKTGKCLKVLP-AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM  192 (321)
Q Consensus       115 ~~~v~~~~~~~~~~~l~~~~~dg~i~~-wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  192 (321)
                      ...+..+.+.|++.+++++ ..|.+.. +| ..++.-.... .....++++.+.++++.+++ +..|.+++=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcc
Confidence            4567888999987666554 4565542 22 1122222222 23456788999998876655 45676653223333321


Q ss_pred             eeeccC---CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec-cCCceeEEEeEEEecCCeEEEEeCCCCe
Q 020798          193 KTLIDD---ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG-HTNSKYCISSTFSVTNGKYIVSGSEDSC  268 (321)
Q Consensus       193 ~~~~~~---~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~  268 (321)
                      ......   ....+..+.+.+++..++ ++.+|.+.. ....++.-..... ...+.......+. .++..++ .+..|.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~-~~~~~~~-~G~~G~  324 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFL-DPEKGFV-LGQRGV  324 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEe-CCCceEE-ECCCce
Confidence            211111   123456778888877555 455665443 3333333222211 0111111222222 3444444 556787


Q ss_pred             EEEEE
Q 020798          269 VYLWE  273 (321)
Q Consensus       269 i~vwd  273 (321)
                      |--|+
T Consensus       325 il~~~  329 (334)
T PRK13684        325 LLRYV  329 (334)
T ss_pred             EEEec
Confidence            76665

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=85.57  E-value=0.12  Score=44.27  Aligned_cols=145  Identities=12%  Similarity=0.209  Sum_probs=89.8

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEE-EEeeCCCcEEEEecCCCEEEEEEe
Q 020798           76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVKTGKCLKVLP  154 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~  154 (321)
                      .....|-+++.-++.++.+..+..||-....... . ..+.....++|.-++..+ +.+-..+.+.+||+.+....+.-.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le-~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILE-L-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcceecc-c-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence            3445677877778889999999999865443222 1 234445567787777764 445677899999987543221111


Q ss_pred             CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeE
Q 020798          155 AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTL  224 (321)
Q Consensus       155 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i  224 (321)
                      .....-.-+.|++....++.+...|.+.++.-.+.+.... ...+...+.++++.+.+.. +.++.|..+
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv-~Gkh~RRgtq~av~lEd~v-il~dcd~~L  182 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV-MGKHQRRGTQIAVTLEDYV-ILCDCDNTL  182 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhh-hcccccceeEEEeccccee-eecCcHHHH
Confidence            1111112267888888888888899999998765432222 2235556778888877643 344444433

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.26  E-value=21  Score=29.87  Aligned_cols=105  Identities=8%  Similarity=0.082  Sum_probs=49.5

Q ss_pred             CCCEEEEEeCCC-----cEEEEecCCccee---eeeecCccc--EEEEEECCCCCEEEEeeC-----CCcEEEEecCCCE
Q 020798           84 DSRFLVSASDDK-----TIRLWDVPTATCL---KTLIGHTNY--VFCVNFNPQSNMIVSGAF-----DETVRIWDVKTGK  148 (321)
Q Consensus        84 ~~~~l~~~~~d~-----~i~iwd~~~~~~~---~~~~~~~~~--v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~  148 (321)
                      ++++++.|+.++     .+..||+.+.+..   ..+..-...  -.+++. -++..++.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            456666776543     4666777665421   111110100  011222 23455566653     2357788887654


Q ss_pred             EEE--EEeCCCCCeeEEEEccCCCEEEEEeCCC----eEEEEeCCCCc
Q 020798          149 CLK--VLPAHSDPVTAVDFNRDGTMIVTSSYDG----LCRIWDASTGH  190 (321)
Q Consensus       149 ~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~~d~~~~~  190 (321)
                      =..  .++. .......+...++.+++.|+.++    .+..||+.+.+
T Consensus       151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            221  1211 11112222234566777777654    24578877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.64  E-value=34  Score=31.86  Aligned_cols=162  Identities=13%  Similarity=0.184  Sum_probs=76.6

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceee-ee--ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEE
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLK-TL--IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCL  150 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  150 (321)
                      ..+-.+.|+.+.. |++-..+|++.+|++....... .+  ......|.-+.+..+|-.+++  .+|.+.+-.-......
T Consensus        84 ~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~  160 (829)
T KOG2280|consen   84 GELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKL  160 (829)
T ss_pred             CCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchh
Confidence            4778899998765 5567899999999975432211 01  112223444444444533333  3344443321111111


Q ss_pred             EEEeC---CCCCeeEEEEccCCC---EEEEEe-CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCe
Q 020798          151 KVLPA---HSDPVTAVDFNRDGT---MIVTSS-YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT  223 (321)
Q Consensus       151 ~~~~~---~~~~v~~~~~~~~~~---~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~  223 (321)
                      ..++.   ..-+-.+-...+++.   .++-.. ..+ ..++-.................+..+..+|++++|+.-...|.
T Consensus       161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~  239 (829)
T KOG2280|consen  161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK  239 (829)
T ss_pred             hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc
Confidence            22211   111111222222211   111111 000 0111111111111111112245677899999999999999999


Q ss_pred             EEEEeCCCCcEEEEEe
Q 020798          224 LRLWNYSTGKILKTYT  239 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~  239 (321)
                      |.+.+....+.+-.+.
T Consensus       240 i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  240 IWVVSIDLSQILCEFN  255 (829)
T ss_pred             EEEEecchhhhhhccC
Confidence            9998877665555443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.50  E-value=17  Score=28.20  Aligned_cols=100  Identities=13%  Similarity=0.151  Sum_probs=58.3

Q ss_pred             CEEEEEeCCCcEEEEecCCc--ceeeeeecCcccEEEEEECCCCCEEEEeeCC---C---cEEEE---ecC--CCEEE--
Q 020798           86 RFLVSASDDKTIRLWDVPTA--TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD---E---TVRIW---DVK--TGKCL--  150 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~~w---d~~--~~~~~--  150 (321)
                      +.|+.+.....|.+|++...  +...++. .-+.|..+.++..|+++++--.+   .   .+|+|   +..  ...++  
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            45555566778999998833  2333333 44778899999999999985322   2   55664   221  01111  


Q ss_pred             ---------------------EEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 020798          151 ---------------------KVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST  188 (321)
Q Consensus       151 ---------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  188 (321)
                                           -.++. ..++.+++..|-..-|+.|+. +.+.+|.+..
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~  164 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGCG-NKLVLFTLKY  164 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEcC-CEEEEEEEEE
Confidence                                 11222 335677887775444444444 5677887653

>smart00564 PQQ beta-propeller repeat

Probab=84.33  E-value=3  Score=20.86  Aligned_cols=25  Identities=16%  Similarity=0.363  Sum_probs=20.1

Q ss_pred             EEEEeCCCCeEEEEEcccceEEEEe
Q 020798          259 YIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       259 ~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      .+++++.+|.+..+|..+++.+.+.
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            4667888999999999888876543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PLN02153 epithiospecifier protein

Probab=84.04  E-value=25  Score=29.72  Aligned_cols=24  Identities=8%  Similarity=0.207  Sum_probs=15.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCcce
Q 020798           84 DSRFLVSASDD-----KTIRLWDVPTATC  107 (321)
Q Consensus        84 ~~~~l~~~~~d-----~~i~iwd~~~~~~  107 (321)
                      ++++++.|+.+     ..+.+||+.+.+.
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W  113 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEW  113 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEE
Confidence            45666677643     3577888876543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.35  E-value=39  Score=31.51  Aligned_cols=50  Identities=14%  Similarity=0.323  Sum_probs=34.8

Q ss_pred             CcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 020798          137 ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST  188 (321)
Q Consensus       137 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  188 (321)
                      -.|++|++. |+.+..+.-....+-.+.|+.+. .|++...+|++++|++..
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence            457788754 55544433333367789998765 577888999999999754

>PLN02193 nitrile-specifier protein

Probab=82.96  E-value=34  Score=30.51  Aligned_cols=138  Identities=16%  Similarity=0.105  Sum_probs=62.6

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCceeeeeccC--CCCCeEEEEEccCCCEEEEEecC-----CeEEEEeCCCCcEE
Q 020798          168 DGTMIVTSSYD-----GLCRIWDASTGHCMKTLIDD--ENPPVSFVKFSPNGKFILVGTLD-----NTLRLWNYSTGKIL  235 (321)
Q Consensus       168 ~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~d-----~~i~i~d~~~~~~~  235 (321)
                      ++.+++.|+.+     ..+..||+.+.+-.......  ..+.....+..-++++++.|+.+     ..+..||+.+.+..
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            45566677654     35778888765432211100  01111111222355666666644     34678887765533


Q ss_pred             EEEec--cCCceeEEEeEEEecCCeEEEEeCCC----CeEEEEEcccceEE--EEec-CCCC-CeEEEEecCCCceEEEE
Q 020798          236 KTYTG--HTNSKYCISSTFSVTNGKYIVSGSED----SCVYLWELQSRKVV--QKLE-GHTD-PVISVASHPTENIIASG  305 (321)
Q Consensus       236 ~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~--~~~~-~h~~-~v~~~~~~p~~~~l~s~  305 (321)
                      .....  ...........  ..+++.++.|+.+    ..+.+||+.+.+-.  ..+. .... ...+++ .-++++++.|
T Consensus       308 ~~~~~~~~~~~R~~~~~~--~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~G  384 (470)
T PLN02193        308 HCSTPGDSFSIRGGAGLE--VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFG  384 (470)
T ss_pred             eCCCCCCCCCCCCCcEEE--EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEEC
Confidence            21110  00001111111  1246666666655    45888998775432  1110 0111 112222 2356788888


Q ss_pred             eec
Q 020798          306 ALD  308 (321)
Q Consensus       306 ~~d  308 (321)
                      +..
T Consensus       385 G~~  387 (470)
T PLN02193        385 GEI  387 (470)
T ss_pred             Ccc
Confidence            753

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.77  E-value=48  Score=33.09  Aligned_cols=150  Identities=15%  Similarity=0.304  Sum_probs=83.7

Q ss_pred             EEEEECCC-CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEE-CCC-------CCEEEEeeCCCcEEEEecC--
Q 020798           77 SDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNF-NPQ-------SNMIVSGAFDETVRIWDVK--  145 (321)
Q Consensus        77 ~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~-------~~~l~~~~~dg~i~~wd~~--  145 (321)
                      ..+-+-|. ++.-+  +.|+.+.+|+.+++.....+.+....|..+.+ -|.       =++++.-..--.|.++-+.  
T Consensus        82 ~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~  159 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD  159 (1311)
T ss_pred             eeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence            34444443 33333  46889999999886655555555555544443 222       1233332333445554332  


Q ss_pred             --CCEE-----EEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeC----CCC---c-eee----------------e
Q 020798          146 --TGKC-----LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA----STG---H-CMK----------------T  194 (321)
Q Consensus       146 --~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~---~-~~~----------------~  194 (321)
                        ++..     ...+......|.++....+|+.|++|-.+ .  +|.+    ..+   + +.+                .
T Consensus       160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~  236 (1311)
T KOG1900|consen  160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG-N--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLS  236 (1311)
T ss_pred             cccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC-C--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhc
Confidence              1111     12233345567888878888877666554 3  3332    111   0 110                1


Q ss_pred             eccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 020798          195 LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST  231 (321)
Q Consensus       195 ~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~  231 (321)
                      +...+..+|..+.++...+.+.+-+..+.|.+||+..
T Consensus       237 ~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  237 VPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            1113345788899988888888888999999999865

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=82.65  E-value=5.5  Score=21.18  Aligned_cols=30  Identities=20%  Similarity=0.299  Sum_probs=21.5

Q ss_pred             CCeE-EEEeCCCCeEEEEEcccceEEEEecC
Q 020798          256 NGKY-IVSGSEDSCVYLWELQSRKVVQKLEG  285 (321)
Q Consensus       256 ~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~  285 (321)
                      ++++ +++.-.++.|.++|..+++.+..+..
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            3444 44455688999999988888777665

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.58  E-value=25  Score=28.76  Aligned_cols=94  Identities=20%  Similarity=0.289  Sum_probs=56.2

Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEee------CCCcEEEEecCCCEEEEEEeC-----CCCCeeE
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA------FDETVRIWDVKTGKCLKVLPA-----HSDPVTA  162 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~~-----~~~~v~~  162 (321)
                      ...|++||..+.+...--.+-.+.|..+.|..+.+.++.|.      ....+..||..+..- ..+..     -.+++..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence            44699999887765444445567899999986655666553      345678898876542 22222     2367777


Q ss_pred             EEEcc-CCC-EEEEEe-C--CCeEEEEeCCC
Q 020798          163 VDFNR-DGT-MIVTSS-Y--DGLCRIWDAST  188 (321)
Q Consensus       163 ~~~~~-~~~-~l~~~~-~--dg~i~~~d~~~  188 (321)
                      +.+.. ++. ..+.|. .  +..+..||-.+
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence            77643 333 343433 2  23466676543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=82.25  E-value=33  Score=29.92  Aligned_cols=143  Identities=19%  Similarity=0.276  Sum_probs=74.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcee--ee-eccCCCCCeEEEEEc---c--CCCEEEEEecCCeEEEEeCCC--Cc-----
Q 020798          169 GTMIVTSSYDGLCRIWDASTGHCM--KT-LIDDENPPVSFVKFS---P--NGKFILVGTLDNTLRLWNYST--GK-----  233 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~~~~~--~~-~~~~~~~~~~~~~~~---~--~g~~l~~~~~d~~i~i~d~~~--~~-----  233 (321)
                      ...+++|+..|.+++|+.......  .. +...-..+|-.+..-   +  ....|++ -.-..+.||.+..  +.     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            458999999999999998543211  11 111223455555432   2  2223333 4456777887621  11     


Q ss_pred             --EEEEEeccCCceeEEEeE---EEecC-CeEEEEeCCCCeEEEEEcccceEEEEecC--CCCCeEEEEecCCCceEEEE
Q 020798          234 --ILKTYTGHTNSKYCISST---FSVTN-GKYIVSGSEDSCVYLWELQSRKVVQKLEG--HTDPVISVASHPTENIIASG  305 (321)
Q Consensus       234 --~~~~~~~~~~~~~~~~~~---~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~  305 (321)
                        .+...-.|.-.......+   |-... ..+++.-+-||.+.+|+-+.-.....+.+  +.+|   +.+.|.-+.|+++
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y~~~tDsfvt~  192 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP---LCYCPRTDSFVTA  192 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC---eEEeecCCEEEEe
Confidence              122222222221112222   21122 46788889999999999765443344443  2333   5566666677776


Q ss_pred             eecCCccEEEcc
Q 020798          306 ALDNDRTVKIWT  317 (321)
Q Consensus       306 ~~d~~~~i~iw~  317 (321)
                      +.  +..+..|.
T Consensus       193 ss--s~~l~~Yk  202 (418)
T PF14727_consen  193 SS--SWTLECYK  202 (418)
T ss_pred             cC--ceeEEEec
Confidence            53  24555554

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=81.97  E-value=32  Score=29.51  Aligned_cols=187  Identities=17%  Similarity=0.332  Sum_probs=98.6

Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEc----cCCCE--EEEEe-CC---CeEEEEeCC--CCcee
Q 020798          125 PQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFN----RDGTM--IVTSS-YD---GLCRIWDAS--TGHCM  192 (321)
Q Consensus       125 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---g~i~~~d~~--~~~~~  192 (321)
                      |...+++....++-+.+||+. |+.++.+..  +....+...    -.++.  |+.++ .+   .+|++|.+.  ++. +
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L  141 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L  141 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence            345677778888899999987 455555542  334433332    13332  44444 32   478998664  332 2


Q ss_pred             eeeccC------CCCCeEEEEE--cc-CCC-EEEEEecCCeEEEEeCC---CC----cEEEEEeccCCceeEEEeEEEec
Q 020798          193 KTLIDD------ENPPVSFVKF--SP-NGK-FILVGTLDNTLRLWNYS---TG----KILKTYTGHTNSKYCISSTFSVT  255 (321)
Q Consensus       193 ~~~~~~------~~~~~~~~~~--~~-~g~-~l~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~~~~~~~~~~~~~  255 (321)
                      ..+...      ....+..+++  ++ +|. +.++...+|.+..|-+.   ++    ++++.+.....    +..|....
T Consensus       142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ----~EGCVVDD  217 (381)
T PF02333_consen  142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQ----PEGCVVDD  217 (381)
T ss_dssp             EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-----EEEEEEET
T ss_pred             eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCc----ceEEEEec
Confidence            222111      1112344443  33 455 45567788988777653   33    45677765433    33344445


Q ss_pred             CCeEEEEeCCCCeEEEEEccc-----ceEEEEecC--CCCCeEEEEec--CCC-ceEEEEeecCCccEEEccccc
Q 020798          256 NGKYIVSGSEDSCVYLWELQS-----RKVVQKLEG--HTDPVISVASH--PTE-NIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       256 ~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~--h~~~v~~~~~~--p~~-~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ....|..|-++.-|.-|+.+.     ++.+....+  ....|-.++.-  +++ .||+..+. ++++..+|+.+.
T Consensus       218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ-G~~sf~Vy~r~~  291 (381)
T PF02333_consen  218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ-GDNSFAVYDREG  291 (381)
T ss_dssp             TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG-GGTEEEEEESST
T ss_pred             ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC-CCCeEEEEecCC
Confidence            566788888887777777642     233433333  34677777763  343 46776665 467888998753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=80.49  E-value=31  Score=28.33  Aligned_cols=190  Identities=14%  Similarity=0.114  Sum_probs=98.3

Q ss_pred             EEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcce
Q 020798           28 SVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC  107 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  107 (321)
                      .++++  +++...+..+..+++.|+......     ..+-.+. -.+.-+++..  .|++...+..|.-+-+.|+.+.+.
T Consensus        91 Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP-----~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          91 DVRVS--EEYVYVADWSSGLRIVDISTPDSP-----TLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             eeEec--ccEEEEEcCCCceEEEeccCCCCc-----ceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence            34444  466777777888999988653221     1111111 1123334444  577888777666678888866532


Q ss_pred             ---eeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeC--CCCCeeEEEEccCCCEEEEEeCCCeEE
Q 020798          108 ---LKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPA--HSDPVTAVDFNRDGTMIVTSSYDGLCR  182 (321)
Q Consensus       108 ---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~  182 (321)
                         .............++.+  |++-..+..|+-+.+.|+........+..  ....+.++..+++..++ +....| +.
T Consensus       161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~-vvy~eg-vl  236 (370)
T COG5276         161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYL-VVYDEG-VL  236 (370)
T ss_pred             ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEE-EEcccc-eE
Confidence               22222223333455555  67777778899999999876543222211  12245666666544333 333333 45


Q ss_pred             EEeCCCCceeeeeccCCCC-CeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 020798          183 IWDASTGHCMKTLIDDENP-PVSFVKFSPNGKFILVGTLDNTLRLWNYST  231 (321)
Q Consensus       183 ~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~  231 (321)
                      +-|..+......+-.-... ++..-.+.-.|++......+.-+.+.|+.+
T Consensus       237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn  286 (370)
T COG5276         237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN  286 (370)
T ss_pred             EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence            5666554422222111111 111112333455666666666666666654

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=80.27  E-value=50  Score=30.66  Aligned_cols=243  Identities=15%  Similarity=0.170  Sum_probs=117.5

Q ss_pred             EEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccc-cccccEEEEEECCC---CCEEEEEeCCCc-EEEEec
Q 020798           28 SVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFT-GHEQGVSDLVFSSD---SRFLVSASDDKT-IRLWDV  102 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~---~~~l~~~~~d~~-i~iwd~  102 (321)
                      +..++|+.+.+-.|=....|.-|-+.       +.+..+..+. .....|.||.....   .+..++|-.++. -++-.+
T Consensus        32 s~~~s~~sn~IdiGIS~S~ISsYIi~-------PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i  104 (670)
T PF10395_consen   32 SDDFSPDSNQIDIGISGSAISSYIIK-------PTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLI  104 (670)
T ss_pred             ecccCCCCceEEEEeccchhhheecC-------CCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEE
Confidence            33678888877666545555545321       2222222222 23455677765432   234555544443 343333


Q ss_pred             CCc-----------c--eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE--EEe-CCCCCeeEEEEc
Q 020798          103 PTA-----------T--CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK--VLP-AHSDPVTAVDFN  166 (321)
Q Consensus       103 ~~~-----------~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~-~~~~~v~~~~~~  166 (321)
                      ...           +  ....+. -.+.+..+.+.++++.+++....|.|.+||...+....  ... .+...+.--.|-
T Consensus       105 ~~~~~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv  183 (670)
T PF10395_consen  105 ERKVGSTEDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFV  183 (670)
T ss_pred             EccCccccccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhh
Confidence            222           0  011122 35668889999999999999999999999983322111  111 111111100222


Q ss_pred             c------CCCEEEEEeC-C---CeEEEEeC--CCCceeeeec--cCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEeCCC
Q 020798          167 R------DGTMIVTSSY-D---GLCRIWDA--STGHCMKTLI--DDENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYST  231 (321)
Q Consensus       167 ~------~~~~l~~~~~-d---g~i~~~d~--~~~~~~~~~~--~~~~~~~~~~~~~~-~g~~l~~~~~d~~i~i~d~~~  231 (321)
                      +      ...++++.+. .   -.++++.+  ...... .+.  ...........|+. +|...-.  .++.|.+|++..
T Consensus       184 ~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~-El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~  260 (670)
T PF10395_consen  184 NDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIF-ELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPN  260 (670)
T ss_pred             cccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceE-EeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCC
Confidence            2      1234443333 2   24677777  222211 111  01111122223332 4543332  678999999988


Q ss_pred             CcEEEEEeccC--Cce-eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEe
Q 020798          232 GKILKTYTGHT--NSK-YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       232 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      -+...++.-..  ... ..+.....+...+.|++  .+..|++.|+.-...+..+
T Consensus       261 f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs--~~nkIyLld~~~~siLse~  313 (670)
T PF10395_consen  261 FQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLS--VNNKIYLLDLKFESILSEF  313 (670)
T ss_pred             ceEEEEEEechhhccccccceEeecCCCCeEEEE--cCCEEEEEeehhhhhhhhh
Confidence            77666654321  010 11222222233455553  3568999998655544443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=80.12  E-value=14  Score=24.16  Aligned_cols=41  Identities=15%  Similarity=0.203  Sum_probs=25.3

Q ss_pred             eCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEe
Q 020798           92 SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG  133 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  133 (321)
                      ..+|.+..||..+++...-+.+ -...+.+++++|+.+++.+
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence            3457788899888864322222 2346789999999977665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	321
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-122
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-122
2h9l_A	329	Wdr5delta23 Length = 329		1e-121
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-121
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-121
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-121
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-121
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-121
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-121
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-121
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-121
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-121
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-121
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-121
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-25
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-120
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-120
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-120
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-25
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		9e-44
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-36
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-11
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-33
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-33
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		8e-28
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		8e-27
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-26
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-26
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-12
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-24
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-13
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-22
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-22
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-22
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-13
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		6e-22
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-13
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-22
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-22
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-13
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		7e-22
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-13
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-22
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-13
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-20
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-20
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-20
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-13
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		9e-20
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		9e-20
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-19
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		8e-15
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-19
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-19
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-19
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-19
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-19
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-19
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-18
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		6e-14
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-18
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-17
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-18
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		7e-16
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		6e-16
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-15
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-14
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		9e-14
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-13
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-05
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-13
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-12
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		7e-06
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-12
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-12
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-11
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		1e-10
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		1e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-10
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-10
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		4e-10
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		4e-10
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		4e-10
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		9e-10
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-09
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		3e-09
3mmy_A	368	Structural And Functional Analysis Of The Interacti		4e-09
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		8e-09
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		1e-08
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-08
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		1e-08
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-07
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		4e-07
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		4e-07
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		1e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		4e-07
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		1e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		4e-07
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		4e-07
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		4e-07
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		1e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		4e-07
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		4e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		4e-04
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		7e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-06
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		4e-05
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		9e-05
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		9e-05
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		9e-05
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		4e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  434 bits (1115), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 35  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 86
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 87  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 326
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 327 IKLWKSD 333

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  433 bits (1113), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 37  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 88
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 89  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 148
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 149 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 208
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 209 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 268
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 269 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 328
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 329 IKLWKSD 335

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  432 bits (1111), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 30  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 81
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 82  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 141
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 142 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 201
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 202 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 261
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 262 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 321
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 322 IKLWKSD 328

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  432 bits (1111), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 19  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 70
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 71  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 310
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 311 IKLWKSD 317

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  432 bits (1111), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 18  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 69
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 70  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 129
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 130 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 189
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 190 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 249
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 250 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 309
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 310 IKLWKSD 316

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  432 bits (1110), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 14  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 65
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 66  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 125
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 185
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 186 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 245
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 246 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 305
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 306 IKLWKSD 312

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  432 bits (1110), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 13  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 64
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 65  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 304
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 305 IKLWKSD 311

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  432 bits (1110), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/313 (65%), Positives = 249/313 (79%), Gaps = 9/313 (2%)
Query: 8   ESFRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXL 66
           E  +P Y L  TL GH +A+SSVKFS +G  LA+SSADK                     
Sbjct: 10  EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-------- 61
Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
           +  +GH+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQ
Sbjct: 62  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
           SN+IVSG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD 
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 187 STGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKY 246
           ++G C+KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KY
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
           CI + FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS A
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 307 LDNDRTVKIWTQE 319
           L+ND+T+K+W  +
Sbjct: 302 LENDKTIKLWKSD 314

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  432 bits (1110), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 13  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 64
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 65  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 304
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 305 IKLWKSD 311

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  431 bits (1109), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 19  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 70
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 71  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 310
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 311 IKLWKSD 317

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  431 bits (1109), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 9   YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 60
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 61  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 120
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 180
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 240
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 241 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 300
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 301 IKLWKSD 307

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  431 bits (1109), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 12  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 63
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 64  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 123
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 183
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 243
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 244 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 303
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 304 IKLWKSD 310

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  431 bits (1108), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 246/307 (80%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 19  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 70
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 71  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 310
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 311 IKLWKSD 317

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  430 bits (1106), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 203/307 (66%), Positives = 245/307 (79%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 16  YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 67
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTG CLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 308 IKLWKSD 314

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 7/219 (3%)
Query: 103 PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTA 162
           P    + TL GHT  V  V F+P    + S + D+ ++IW    GK  K +  H   ++ 
Sbjct: 14  PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 163 VDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN 222
           V ++ D  ++V++S D   +IWD S+G C+KTL    N  V    F+P    I+ G+ D 
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDE 132
Query: 223 TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK 282
           ++R+W+  TG  LKT   H++    +S+     +G  IVS S D    +W+  S + ++ 
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 283 LEGHTDPVIS-VASHPTENIIASGALDNDRTVKIWTQEK 320
           L    +P +S V   P    I +  LDN  T+K+W   K
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDN--TLKLWDYSK 226

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  429 bits (1103), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/313 (65%), Positives = 249/313 (79%), Gaps = 9/313 (2%)
Query: 8   ESFRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXL 66
           E  +P Y L  TL GH +A+SSVKFS +G  LASSSADK                     
Sbjct: 10  EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------- 61
Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
           +  +GH+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQ
Sbjct: 62  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
           SN+IVSG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD 
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 187 STGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKY 246
           ++G C+KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KY
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
           CI + FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS A
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 307 LDNDRTVKIWTQE 319
           L+ND+T+K++  +
Sbjct: 302 LENDKTIKLYKSD 314

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  428 bits (1101), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/313 (65%), Positives = 249/313 (79%), Gaps = 9/313 (2%)
Query: 8   ESFRP-YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXL 66
           E  +P Y L  TL GH +A+SSVKFS +G  LASSSADK                     
Sbjct: 10  EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------- 61
Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
           +  +GH+ G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQ
Sbjct: 62  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
           SN+IVSG+FDE+VRIWDVKTGKCLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD 
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 187 STGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKY 246
           ++G C+KTLIDD+NPPVSFVKFSPNGK+IL  TLDNTL+LW+YS GK LKTYTGH N KY
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
           CI + FSVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS A
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 307 LDNDRTVKIWTQE 319
           L+ND+T+K++  +
Sbjct: 302 LENDKTIKLFKSD 314

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/307 (65%), Positives = 244/307 (79%), Gaps = 8/307 (2%)
Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGH 72
           Y L  TL GH +A+SSVKFS +G  LASSSADK                     +  +GH
Sbjct: 16  YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGH 67
Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
           + G+SD+ +SSDS  LVSASDDKT+++WDV +  CLKTL GH+NYVFC NFNPQSN+IVS
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
           G+FDE+VRIWDVKTG CLK LPAHSDPV+AV FNRDG++IV+SSYDGLCRIWD ++G C+
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           KTLIDD+NPPVSFVKFSPNGK+IL  TLDN L+LW+YS GK LKTYTGH N KYCI + F
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           SVT GK+IVSGSED+ VY+W LQ++++VQKL+GHTD VIS A HPTENIIAS AL+ND+T
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 313 VKIWTQE 319
           +K+W  +
Sbjct: 308 IKLWKSD 314

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 7/219 (3%)
Query: 103 PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTA 162
           P    + TL GHT  V  V F+P    + S + D+ ++IW    GK  K +  H   ++ 
Sbjct: 14  PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 163 VDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN 222
           V ++ D  ++V++S D   +IWD S+G C+KTL    N  V    F+P    I+ G+ D 
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDE 132
Query: 223 TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK 282
           ++R+W+  TG  LKT   H++    +S+     +G  IVS S D    +W+  S + ++ 
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 283 LEGHTDPVIS-VASHPTENIIASGALDNDRTVKIWTQEK 320
           L    +P +S V   P    I +  LDND  +K+W   K
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDND--LKLWDYSK 226

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  173 bits (439), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 173/311 (55%), Gaps = 20/311 (6%)
Query: 11  RPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFT 70
           R   L QTL GH  ++  V FS DG+ +AS+S DK                    LQ  T
Sbjct: 45  RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL---------LQTLT 95
Query: 71  GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
           GH   V  + FS D + + SASDDKT++LW+      L+TL GH++ V+ V F+P    I
Sbjct: 96  GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTI 154
Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
            S + D+TV++W+ + G+ L+ L  HS  V  V F+ DG  I ++S D   ++W+ + G 
Sbjct: 155 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ 212
Query: 191 CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISS 250
            ++TL    +  V  V FSP+G+ I   + D T++LWN + G++L+T TGH++S   ++ 
Sbjct: 213 LLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVA- 269
Query: 251 TFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDND 310
            F   +G+ I S S+D  V LW  ++ +++Q L GH+  V  VA  P    IAS +  +D
Sbjct: 270 -FR-PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS--DD 324
Query: 311 RTVKIWTQEKE 321
           +TVK+W +  +
Sbjct: 325 KTVKLWNRNGQ 335

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 138/268 (51%), Gaps = 26/268 (9%)
Query: 69  FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN 128
             GH   V D+ F    + L S S D TI+LWD     C++T+ GH + V  V+  P  +
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 129 MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST 188
            IVS + D+T+++W+V+TG C+K    H + V  V  N+DGT+I + S D   R+W  +T
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 189 GHCMKTLIDDENPPVSFVKFSPN--------------------GKFILVGTLDNTLRLWN 228
             C K  + +    V  + ++P                     G F+L G+ D T+++W+
Sbjct: 266 KEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Query: 229 YSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD 288
            STG  L T  GH N    +      + GK+I+S ++D  + +W+ ++++ ++ L  H  
Sbjct: 325 VSTGMCLMTLVGHDN---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 381
Query: 289 PVISVASHPTENIIASGALDNDRTVKIW 316
            V S+  H T   + +G++  D+TVK+W
Sbjct: 382 FVTSLDFHKTAPYVVTGSV--DQTVKVW 407

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           K  +     PV+ V F P    ++  + D T+++W+Y TG   +T  GHT+S   IS   
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
           S   GK + S S D  + LW+ Q  + ++ + GH   V SV+  P  + I S +   D+T
Sbjct: 161 S---GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS--RDKT 215
Query: 313 VKIW 316
           +K+W
Sbjct: 216 IKMW 219

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  138 bits (348), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 145/256 (56%), Gaps = 25/256 (9%)
Query: 66  LQKFTGHEQGVSDLVFSSDSR--FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNF 123
           L+   GH  GV    +SS  R   ++S S D+T+++W+  T  C+ TL GHT+ V C++ 
Sbjct: 152 LRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 124 NPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRI 183
           + +   +VSG+ D T+R+WD++TG+CL VL  H   V  V +  DG  +V+ +YD + ++
Sbjct: 208 HEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263
Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
           WD  T  C+ TL    N   S  +F  +G  ++ G+LD ++R+W+  TG  + T TGH +
Sbjct: 264 WDPETETCLHTLQGHTNRVYSL-QF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 320
Query: 244 SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG---HTDPVISVASHPTEN 300
               ++S   + +   +VSG+ DS V +W++++ + +Q L+G   H   V  +  +    
Sbjct: 321 ----LTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV 375
Query: 301 IIASGALDNDRTVKIW 316
           I +S    +D TVK+W
Sbjct: 376 ITSS----DDGTVKLW 387

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 138/270 (51%), Gaps = 31/270 (11%)
Query: 76  VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF 135
           +  + FS D +FL + ++D+ IR+WD+     +  L GH   ++ +++ P  + +VSG+ 
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 136 DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL 195
           D TVRIWD++TG+C   L       T      DG  I   S D   R+WD+ TG  ++ L
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 196 IDDENP-------PVSFVKFSPNGKFILVGTLDNTLRLWNY------------STGKILK 236
            D EN         V  V F+ +G+ ++ G+LD +++LWN             ++G    
Sbjct: 246 -DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 237 TYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASH 296
           TY GH +    +++T    N +YI+SGS+D  V  W+ +S   +  L+GH + VISVA  
Sbjct: 305 TYIGHKDFVLSVATT---QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361
Query: 297 ------PTENIIASGALDNDRTVKIWTQEK 320
                 P  N+ A+G+   D   +IW  +K
Sbjct: 362 NGSSLGPEYNVFATGS--GDCKARIWKYKK 389

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 124/235 (52%), Gaps = 17/235 (7%)
Query: 84  DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD 143
           D + +VS   D TI++WD  T  C + L GHT  V C+ ++ +  +I++G+ D TVR+WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWD 199
Query: 144 VKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS--TGHCMKTLIDDENP 201
           V TG+ L  L  H + V  + FN    M+VT S D    +WD +  T   ++ ++     
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 202 PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIV 261
            V+ V F  + K+I+  + D T+++WN ST + ++T  GH     C+         + +V
Sbjct: 258 AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ-----YRDRLVV 310
Query: 262 SGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           SGS D+ + LW+++    ++ LEGH + V  +        I SGA D    +K+W
Sbjct: 311 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDG--KIKVW 361

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 135/262 (51%), Gaps = 22/262 (8%)
Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
           ++  GH   VSD+  S++  F VSAS D ++RLW++    C    +GHT  V  V F+P 
Sbjct: 61  RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLP--AHSDPVTAVDFNR--DGTMIVTSSYDGLCR 182
           +  IVSG  D  +R+W+VK G+C+  L   AH+D V+ V F+   D  +IV+  +D L +
Sbjct: 121 NRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKIL-KTYTGH 241
           +WD +TG  +  L    N  V+ V  SP+G        D   RLW+ + G+ L +   G 
Sbjct: 180 VWDLATGRLVTDLKGHTN-YVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL----EGHTDPV---ISVA 294
             ++ C S        +Y +  + +  + +++L+++ ++ +L    +G    V   +S+A
Sbjct: 239 PINQICFSPN------RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIA 292
Query: 295 SHPTENIIASGALDNDRTVKIW 316
                + + SG  DN   +++W
Sbjct: 293 WSADGSTLYSGYTDN--VIRVW 312

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 29/314 (9%)
Query: 22  HLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLVF 81
           H  A+    FS DG+ +AS  ADK                    L     HE  V    F
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADK--------TLQVFKAETGEKLLDIKAHEDEVLCCAF 672
Query: 82  SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN--MIVSGAFDETV 139
           SSD  ++ + S DK +++WD  T   + T   H+  V C +F  +SN  ++ +G+ D  +
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL---- 195
           ++WD+   +C   +  H++ V    F+ D  ++ + S DG  R+WD  + +  K++    
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 792
Query: 196 --IDDENPP------VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS-KY 246
             +  E+PP      V    +S +G  I+V   +  L    +++G + + +TGH ++ +Y
Sbjct: 793 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 852
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
           C    FS  +   +++ S+  CV LW + SR  V    GH   V  V   P  +   + +
Sbjct: 853 C---DFSPYDHLAVIALSQ-YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 908
Query: 307 LDNDRTVKIWTQEK 320
             +D+T+++W  +K
Sbjct: 909 --DDQTIRVWETKK 920

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 152 VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN 211
           V+  H+D V    F++DG  I +   D   +++ A TG  +  +   E+  V    FS +
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSD 675
Query: 212 GKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYL 271
             +I   + D  +++W+ +TGK++ TY  H+    C   T + +N   + +GS D  + L
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT-NKSNHLLLATGSNDFFLKL 734
Query: 272 WELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           W+L  ++    + GHT+ V      P + ++AS + D   T+++W
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG--TLRLW 777

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 29/314 (9%)
Query: 22  HLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGVSDLVF 81
           H  A+    FS DG+ +AS  ADK                    L     HE  V    F
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADK--------TLQVFKAETGEKLLDIKAHEDEVLCCAF 665
Query: 82  SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN--MIVSGAFDETV 139
           SSD  ++ + S DK +++WD  T   + T   H+  V C +F  +SN  ++ +G+ D  +
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL---- 195
           ++WD+   +C   +  H++ V    F+ D  ++ + S DG  R+WD  + +  K++    
Sbjct: 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785
Query: 196 --IDDENPP------VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS-KY 246
             +  E+PP      V    +S +G  I+V   +  L    +++G + + +TGH ++ +Y
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
           C    FS  +   +++ S+  CV LW + SR  V    GH   V  V   P  +   + +
Sbjct: 846 C---DFSPYDHLAVIALSQ-YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901
Query: 307 LDNDRTVKIWTQEK 320
             +D+T+++W  +K
Sbjct: 902 --DDQTIRVWETKK 913

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 152 VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN 211
           V+  H+D V    F++DG  I +   D   +++ A TG  +  +   E+  V    FS +
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSD 668
Query: 212 GKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYL 271
             +I   + D  +++W+ +TGK++ TY  H+    C   T + +N   + +GS D  + L
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT-NKSNHLLLATGSNDFFLKL 727
Query: 272 WELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           W+L  ++    + GHT+ V      P + ++AS + D   T+++W
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG--TLRLW 770

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 13/236 (5%)
Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
           +   GH   VSD+V SSD +F +S S D T+RLWD+ T T  +  +GHT  V  V F+  
Sbjct: 57  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVL--PAHSDPVTAVDF--NRDGTMIVTSSYDGLCR 182
           +  IVSG+ D+T+++W+   G C   +   +HS+ V+ V F  N    +IV+  +D L +
Sbjct: 117 NRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 183 IWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH 241
           +W+ +  +C +KT        ++ V  SP+G     G  D    LW+ + GK L T  G 
Sbjct: 176 VWNLA--NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP 297
                 I +    +  +Y +  +    + +W+L+ + +V +L+       S A  P
Sbjct: 234 D-----IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP 284

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 13/236 (5%)
Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
           +   GH   VSD+V SSD +F +S S D T+RLWD+ T T  +  +GHT  V  V F+  
Sbjct: 80  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVL--PAHSDPVTAVDF--NRDGTMIVTSSYDGLCR 182
           +  IVSG+ D+T+++W+   G C   +   +HS+ V+ V F  N    +IV+  +D L +
Sbjct: 140 NRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 183 IWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH 241
           +W+ +  +C +KT        ++ V  SP+G     G  D    LW+ + GK L T  G 
Sbjct: 199 VWNLA--NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP 297
                 I +    +  +Y +  +    + +W+L+ + +V +L+       S A  P
Sbjct: 257 D-----IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP 307

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
           ++ TGH   V D+V SSD +F +S S D  +RLWD+      +  +GHT  V  V F+  
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVL----PAHSDPVTAVDF--NRDGTMIVTSSYDGL 180
           +  IVS + D T+++W+   G+C   +      H D V+ V F  N     IV++S+D  
Sbjct: 484 NRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT 542
Query: 181 CRIWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
            ++W+ S  +C +++ +      VS V  SP+G     G  D  + LW+ + GK  K Y+
Sbjct: 543 VKVWNLS--NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYS 598
Query: 240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE 284
              NS   +      +  +Y +  + +  + +W+L+S+ +V+ L+
Sbjct: 599 LEANS---VIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK 640

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 17/218 (7%)
Query: 110 TLIGHTNYVFCVNFNPQSN--MIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTA 162
           T+  HT+ V  +   P  N  +IVS + D+++ +W     D   G   + L  HS  V  
Sbjct: 377 TMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 163 VDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN 222
           V  + DG   ++ S+DG  R+WD + G   +  +      +S V FS + + I+  + D 
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS-VAFSLDNRQIVSASRDR 494
Query: 223 TLRLWNYSTGKILKTYT----GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK 278
           T++LWN + G+   T +    GH +   C+  + + T    IVS S D  V +W L + K
Sbjct: 495 TIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPN-TLQPTIVSASWDKTVKVWNLSNCK 552
Query: 279 VVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           +   L GHT  V +VA  P  ++ ASG    D  V +W
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGG--KDGVVLLW 588

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score =  101 bits (251), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 8/182 (4%)
Query: 66  LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
           ++ F GH   V D   ++D  + +SAS DKT+RLWDV T    +  +GH + V  V+ + 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDG 179
           +++MI+SG+ D+T+++W +K G+CL  L  H+D V+ V        + D   I+++  D 
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
           + + W+ +        I   N  ++ +  SP+G  I     D  + LWN +  K + T +
Sbjct: 177 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 240 GH 241
Sbjct: 236 AQ 237

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 19/219 (8%)
Query: 110 TLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTAV 163
           TL GH  +V  +  +  Q N+++S + D+T+  W     D K G  ++    HS  V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT 223
               DG   +++S+D   R+WD +TG   +  +  ++  +S V        I+ G+ D T
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKT 130
Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY------IVSGSEDSCVYLWELQSR 277
           +++W    G+ L T  GH +    +S    V N K       I+S   D  V  W L   
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           ++     GH   + ++ + P   +IAS   D +  + +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE--IMLW 223

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 210 PNGKFILVGTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
           PN   +L  + D TL  W  +      G  ++++ GH+   + +       +G Y +S S
Sbjct: 30  PN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSAS 84
Query: 265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
            D  + LW++ + +  Q+  GH   V+SV      ++I SG+   D+T+K+WT
Sbjct: 85  WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 135

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 127/265 (47%), Gaps = 23/265 (8%)
Query: 66  LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
           ++ F GH   V D   ++D  + +SAS DKT+RLWDV T    +  +GH + V  V+ + 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDG 179
           +++MI+SG+ D+T+++W +K G+CL  L  H+D V+ V        + D   I+++  D 
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
           + + W+ +        I   N  ++ +  SP+G  I     D  + LWN +  K + T +
Sbjct: 177 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE-------GHTDP-VI 291
                    S  FS    +Y ++ +  + + ++ L  + +V  L           +P  +
Sbjct: 236 AQDE---VFSLAFSPN--RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAV 290
Query: 292 SVASHPTENIIASGALDNDRTVKIW 316
           S+A       + +G  DN   +++W
Sbjct: 291 SLAWSADGQTLFAGYTDN--VIRVW 313

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 210 PNGKFILVGTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
           PN   +L  + D TL  W  +      G  ++++ GH+   + +       +G Y +S S
Sbjct: 30  PN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSAS 84
Query: 265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
            D  + LW++ + +  Q+  GH   V+SV      ++I SG+   D+T+K+WT
Sbjct: 85  WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 135

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 8/182 (4%)
Query: 66  LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
           ++ F GH   V D   ++D  + +SAS DKT+RLWDV T    +  +GH + V  V+ + 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDG 179
           +++MI+SG+ D+T+++W +K G+CL  L  H+D V+ V        + D   I+++  D 
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
           + + W+ +        I   N  ++ +  SP+G  I     D  + LWN +  K + T +
Sbjct: 177 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 240 GH 241
Sbjct: 236 AQ 237

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 19/219 (8%)
Query: 110 TLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTAV 163
           TL GH  +V  +  +  Q N+++S + D+T+  W     D K G  ++    HS  V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT 223
               DG   +++S+D   R+WD +TG   +  +  ++  +S V        I+ G+ D T
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKT 130
Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY------IVSGSEDSCVYLWELQSR 277
           +++W    G+ L T  GH +    +S    V N K       I+S   D  V  W L   
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           ++     GH   + ++ + P   +IAS   D +  + +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE--IMLW 223

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 210 PNGKFILVGTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
           PN   +L  + D TL  W  +      G  ++++ GH+   + +       +G Y +S S
Sbjct: 30  PN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSAS 84
Query: 265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
            D  + LW++ + +  Q+  GH   V+SV      ++I SG+   D+T+K+WT
Sbjct: 85  WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 135

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 8/182 (4%)
Query: 66  LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
           ++ F GH   V D   ++D  + +SAS DKT+RLWDV T    +  +GH + V  V+ + 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDG 179
           +++MI+SG+ D+T+++W +K G+CL  L  H+D V+ V        + D   I+++  D 
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
           + + W+ +        I   N  ++ +  SP+G  I     D  + LWN +  K + T +
Sbjct: 177 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 240 GH 241
Sbjct: 236 AQ 237

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 19/219 (8%)
Query: 110 TLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTAV 163
           TL GH  +V  +  +  Q N+++S + D+T+  W     D K G  ++    HS  V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT 223
               DG   +++S+D   R+WD +TG   +  +  ++  +S V        I+ G+ D T
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKT 130
Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY------IVSGSEDSCVYLWELQSR 277
           +++W    G+ L T  GH +    +S    V N K       I+S   D  V  W L   
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           ++     GH   + ++ + P   +IAS   D +  + +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE--IMLW 223

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 210 PNGKFILVGTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
           PN   +L  + D TL  W  +      G  ++++ GH+   + +       +G Y +S S
Sbjct: 30  PN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSAS 84
Query: 265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
            D  + LW++ + +  Q+  GH   V+SV      ++I SG+   D+T+K+WT
Sbjct: 85  WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 135

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score =  100 bits (250), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 8/182 (4%)
Query: 66  LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
           ++ F GH   V D   ++D  + +SAS DKT+RLWDV T    +  +GH + V  V+ + 
Sbjct: 52  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDG 179
           +++MI+SG+ D+T+++W +K G+CL  L  H+D V+ V        + D   I+++  D 
Sbjct: 112 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
           + + W+ +        I   N  ++ +  SP+G  I     D  + LWN +  K + T +
Sbjct: 171 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 229
Query: 240 GH 241
Sbjct: 230 AQ 231

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 19/219 (8%)
Query: 110 TLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTAV 163
           TL GH  +V  +  +  Q N+++S + D+T+  W     D K G  ++    HS  V   
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT 223
               DG   +++S+D   R+WD +TG   +  +  ++  +S V        I+ G+ D T
Sbjct: 66  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKT 124
Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY------IVSGSEDSCVYLWELQSR 277
           +++W    G+ L T  GH +    +S    V N K       I+S   D  V  W L   
Sbjct: 125 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           ++     GH   + ++ + P   +IAS   D +  + +W
Sbjct: 181 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE--IMLW 217

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 210 PNGKFILVGTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
           PN   +L  + D TL  W  +      G  ++++ GH+   + +       +G Y +S S
Sbjct: 24  PN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSAS 78
Query: 265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
            D  + LW++ + +  Q+  GH   V+SV      ++I SG+   D+T+K+WT
Sbjct: 79  WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWT 129

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 26/229 (11%)
Query: 84  DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD 143
           +  ++++ +DDK IR++D      L  L GH   V+ + +     ++VSG+ D TVR+WD
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWD 189
Query: 144 VKTGKCLKVLPAHSDPVTAVDF--NRDGTMIVTSSYDGLCRIW---------DASTGHCM 192
           +K G C  V   H+  V  +D    ++   IVT S D    +W         D    H  
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 193 KTLID--DENP---------PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH 241
             +    +ENP           S    S +G  ++ G+ DNTL +W+ +  K L   +GH
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV 290
           T+  Y   ST      K  +S S D+ + +W+L++ ++   L+GHT  V
Sbjct: 310 TDRIY---STIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALV 355

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 84  DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD 143
           +  ++++ +DDK IR++D      L  L GH   V+ + +     ++VSG+ D TVR+WD
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWD 189
Query: 144 VKTGKCLKVLPAHSDPVTAVDF--NRDGTMIVTSSYDGLCRIW---------DASTGHCM 192
           +K G C  V   H+  V  +D    ++   IVT S D    +W         D    H  
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 193 KTLID--DENP---------PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH 241
             +    +ENP           S    S +G  ++ G+ DNTL +W+ +  K L   +GH
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV 290
           T+  Y   ST      K  +S S D+ + +W+L++ +++  L+GHT  V
Sbjct: 310 TDRIY---STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 66  LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
           ++ F GH   V D   ++D  + +SAS DKT+RLWDV T    +  +GH + V  V+ + 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDG 179
           +++ I+SG+ D+T+++W +K G+CL  L  H+D V+ V        + D   I+++  D 
Sbjct: 118 KASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
             + W+ +        I   N  ++ +  SP+G  I     D  + LWN +  K   T +
Sbjct: 177 XVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLS 235
Query: 240 GH 241
Sbjct: 236 AQ 237

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 19/219 (8%)
Query: 110 TLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIW-----DVKTGKCLKVLPAHSDPVTAV 163
           TL GH  +V  +  +  Q N+++S + D+T+  W     D K G  ++    HS  V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNT 223
               DG   +++S+D   R+WD +TG   +  +  ++  V  V        I+ G+ D T
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD-VXSVDIDKKASXIISGSRDKT 130
Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY------IVSGSEDSCVYLWELQSR 277
           +++W    G+ L T  GH +    +S    V N K       I+S   D  V  W L   
Sbjct: 131 IKVWTIK-GQCLATLLGHND---WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQF 186
Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           ++     GH   + ++ + P   +IAS   D +  + +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGE--IXLW 223

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 210 PNGKFILVGTLDNTLRLWNYST-----GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
           PN   +L  + D TL  W  +      G  ++++ GH+   + +       +G Y +S S
Sbjct: 30  PN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSAS 84
Query: 265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
            D  + LW++ + +  Q+  GH   V SV      + I SG+   D+T+K+WT
Sbjct: 85  WDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGS--RDKTIKVWT 135

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 115/253 (45%), Gaps = 7/253 (2%)
Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
           + F+     V  + F     ++++      + LW+  T   ++++      V    F  +
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
            N I+ G+ D  +R+++  TG+ +    AH D + ++  +     +++ S D   ++W+ 
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 187 STGHCMKTLIDDENPPVSFVKFSPNGKFILV-GTLDNTLRLWNYSTGKILKTYTGHTNSK 245
                ++   +     V  V F+P        G LD T+++W  S G+    +T  T  +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQE 184
Query: 246 YCISST--FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA 303
             ++    + + +  Y+++ S+D  + +W+ Q++  V  LEGH   V     HPT  II 
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 304 SGALDNDRTVKIW 316
           SG+   D T+KIW
Sbjct: 245 SGS--EDGTLKIW 255

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVS 262
           V  + F P   ++L       + LWNY T   +++      ++  + +   +    +I+ 
Sbjct: 16  VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV---TETPVRAGKFIARKNWIIV 72
Query: 263 GSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE 319
           GS+D  + ++   + + V   E H D + S+A HPT+  + SG+  +D TVK+W  E
Sbjct: 73  GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWE 127

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 115/253 (45%), Gaps = 7/253 (2%)
Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
           + F+     V  + F     ++++      + LW+  T   ++++      V    F  +
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
            N I+ G+ D  +R+++  TG+ +    AH D + ++  +     +++ S D   ++W+ 
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 187 STGHCMKTLIDDENPPVSFVKFSPNGKFILV-GTLDNTLRLWNYSTGKILKTYTGHTNSK 245
                ++   +     V  V F+P        G LD T+++W  S G+    +T  T  +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQE 184
Query: 246 YCISST--FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA 303
             ++    + + +  Y+++ S+D  + +W+ Q++  V  LEGH   V     HPT  II 
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 304 SGALDNDRTVKIW 316
           SG+   D T+KIW
Sbjct: 245 SGS--EDGTLKIW 255

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVS 262
           V  + F P   ++L       + LWNY T   +++      ++  + +   +    +I+ 
Sbjct: 16  VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV---TETPVRAGKFIARKNWIIV 72
Query: 263 GSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE 319
           GS+D  + ++   + + V   E H D + S+A HPT+  + SG+  +D TVK+W  E
Sbjct: 73  GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWE 127

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 7/208 (3%)
Query: 69  FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL-KTLIGHTNYVFCVNFNPQS 127
           F  H   +  +       +++S SDD T++LW+      L +T  GH ++V CV FNP+ 
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 128 -NMIVSGAFDETVRIWDV-KTGKCLKVLPAHSDPVTAVDFNR--DGTMIVTSSYDGLCRI 183
            +   SG  D TV++W + ++     +       V  VD+    D   ++T+S D   +I
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
           WD  T  C+ TL +     VSF  F P    I+ G+ D TL++WN ST K+ KT      
Sbjct: 213 WDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
Query: 244 SKYCISSTFSVTNGKYIVSGSEDSCVYL 271
             +CI +T       YI SG ++    L
Sbjct: 272 RSWCI-ATHPTGRKNYIASGFDNGFTVL 298

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 7/223 (3%)
Query: 97  IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH 156
           + +W+  T   ++++      V    F  + N I+ G+ D  +R+++  TG+ +    AH
Sbjct: 37  VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 157 SDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFIL 216
            D + ++  +     +++ S D   ++W+      ++   +     V  V F+P      
Sbjct: 97  PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 217 V-GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST--FSVTNGKYIVSGSEDSCVYLWE 273
             G LD T+++W  S G+    +T  T  +  ++    + + +  Y+++ S+D  + +W+
Sbjct: 157 ASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 274 LQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
            Q++  V  LEGH   V     HPT  II SG+   D T+KIW
Sbjct: 215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS--EDGTLKIW 255

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 192 MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
           +K    + +  V  + F P   ++L       + +WNY T   +++      ++  + + 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI---QVTETPVRAG 61
Query: 252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR 311
             +    +I+ GS+D  + ++   + + V   E H D + S+A HPT+  + SG+  +D 
Sbjct: 62  KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDL 119
Query: 312 TVKIWTQE 319
           TVK+W  E
Sbjct: 120 TVKLWNWE 127

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 115/253 (45%), Gaps = 7/253 (2%)
Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
           + F+     V  + F     ++++      + LW+  T   ++++      V    F  +
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
            N I+ G+ D  +R+++  TG+ +    AH D + ++  +     +++ S D   ++W+ 
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 187 STGHCMKTLIDDENPPVSFVKFSPNGKFILV-GTLDNTLRLWNYSTGKILKTYTGHTNSK 245
                ++   +     V  V F+P        G LD T+++W  S G+    +T  T  +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQE 184
Query: 246 YCISST--FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA 303
             ++    + + +  Y+++ S+D  + +W+ Q++  V  LEGH   V     HPT  II 
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 304 SGALDNDRTVKIW 316
           SG+   D T+KIW
Sbjct: 245 SGS--EDGTLKIW 255

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 192 MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
           +K    + +  V  + F P   ++L       + LWNY T   +++      ++  + + 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI---QVTETPVRAG 61
Query: 252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR 311
             +    +I+ GS+D  + ++   + + V   E H D + S+A HPT+  + SG+  +D 
Sbjct: 62  KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDL 119
Query: 312 TVKIWTQE 319
           TVK+W  E
Sbjct: 120 TVKLWNWE 127

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 129/304 (42%), Gaps = 17/304 (5%)
Query: 17  QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
           +TL GHL  I ++ +  D RLL S+S D                     +         V
Sbjct: 60  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK--------VHAIPLRSSWV 111
Query: 77  SDLVFSSDSRFLVSASDDKTIRLWDVPT----ATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
               ++    ++     D    ++++ T        + L GHT Y+ C  F    N IV+
Sbjct: 112 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 170
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
            + D T  +WD++TG+       H+  V ++    D  + V+ + D   ++WD   G C 
Sbjct: 171 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           +T    E+  ++ + F PNG     G+ D T RL++    + L TY+ H N    I+S  
Sbjct: 231 QTFTGHESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVS 288
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
              +G+ +++G +D    +W+         L GH + V  +        +A+G+ D+   
Sbjct: 289 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS--F 346
Query: 313 VKIW 316
           +KIW
Sbjct: 347 LKIW 350

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 129/304 (42%), Gaps = 17/304 (5%)
Query: 17  QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
           +TL GHL  I ++ +  D RLL S+S D                     +         V
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK--------VHAIPLRSSWV 100
Query: 77  SDLVFSSDSRFLVSASDDKTIRLWDVPT----ATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
               ++    ++     D    ++++ T        + L GHT Y+ C  F    N IV+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
            + D T  +WD++TG+       H+  V ++    D  + V+ + D   ++WD   G C 
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           +T    E+  ++ + F PNG     G+ D T RL++    + L TY+ H N    I+S  
Sbjct: 220 QTFTGHESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVS 277
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
              +G+ +++G +D    +W+         L GH + V  +        +A+G+ D+   
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS--F 335
Query: 313 VKIW 316
           +KIW
Sbjct: 336 LKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 129/304 (42%), Gaps = 17/304 (5%)
Query: 17  QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
           +TL GHL  I ++ +  D RLL S+S D                     +         V
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK--------VHAIPLRSSWV 100
Query: 77  SDLVFSSDSRFLVSASDDKTIRLWDVPT----ATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
               ++    ++     D    ++++ T        + L GHT Y+ C  F    N IV+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
            + D T  +WD++TG+       H+  V ++    D  + V+ + D   ++WD   G C 
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           +T    E+  ++ + F PNG     G+ D T RL++    + L TY+ H N    I+S  
Sbjct: 220 QTFTGHESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVS 277
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
              +G+ +++G +D    +W+         L GH + V  +        +A+G+ D+   
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS--F 335
Query: 313 VKIW 316
           +KIW
Sbjct: 336 LKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 129/304 (42%), Gaps = 17/304 (5%)
Query: 17  QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
           +TL GHL  I ++ +  D RLL S+S D                     +         V
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK--------VHAIPLRSSWV 100
Query: 77  SDLVFSSDSRFLVSASDDKTIRLWDVPT----ATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
               ++    ++     D    ++++ T        + L GHT Y+ C  F    N IV+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
            + D T  +WD++TG+       H+  V ++    D  + V+ + D   ++WD   G C 
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           +T    E+  ++ + F PNG     G+ D T RL++    + L TY+ H N    I+S  
Sbjct: 220 QTFTGHESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVS 277
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
              +G+ +++G +D    +W+         L GH + V  +        +A+G+ D+   
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS--F 335
Query: 313 VKIW 316
           +KIW
Sbjct: 336 LKIW 339

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 129/304 (42%), Gaps = 17/304 (5%)
Query: 17  QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
           +TL GHL  I ++ +  D RLL S+S D                     +         V
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK--------VHAIPLRSSWV 100
Query: 77  SDLVFSSDSRFLVSASDDKTIRLWDVPT----ATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
               ++    ++     D    ++++ T        + L GHT Y+ C  F    N IV+
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM 192
            + D T  +WD++TG+       H+  V ++    D  + V+ + D   ++WD   G C 
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF 252
           +T    E+  ++ + F PNG     G+ D T RL++    + L TY+ H N    I+S  
Sbjct: 220 QTFTGHESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVS 277
Query: 253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT 312
              +G+ +++G +D    +W+         L GH + V  +        +A+G+ D+   
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS--F 335
Query: 313 VKIW 316
           +KIW
Sbjct: 336 LKIW 339

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 19/230 (8%)
Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
           +   GH   V  L ++ +  ++VSAS D  + +W+  T+     +  H  +V    F P 
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 127 SNMIVSGAFDETVRIWDVKTGK-------CLKVLPAHSDPVTAVDFNRDG-TMIVTSSYD 178
              +  G  D    I+++ +           +VL  H    ++  +  D  T ++T S D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 179 GLCRIWDASTGHCMKTLIDDENPP------VSFVKFSPNGKFILVGTLDNTLRLWNYS-T 231
             C +WD +TG  + ++   E P       +S    S N    + G+ D T+RLW+   T
Sbjct: 180 QTCVLWDVTTGQRI-SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 232 GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ 281
            + ++TY GH      I+S     +G+   +GS+D    L+++++   +Q
Sbjct: 239 SRAVRTYHGHEGD---INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 25/220 (11%)
Query: 107 CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFN 166
           C +TL GH+  V+ +++ P+ N IVS + D  + +W+  T +    +  H   V    F 
Sbjct: 58  CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 167 RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFV-----------KFSPNGKFI 215
            +G  +     D  C I++ S+         D N PVS V           ++ P+ +  
Sbjct: 118 PNGQSVACGGLDSACSIFNLSS-----QADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 216 LV-GTLDNTLRLWNYSTGKILKTY-----TGHTNSKYCISSTFSVTNGKYIVSGSEDSCV 269
           L+ G+ D T  LW+ +TG+ +  +     +GHT     +S + +  N    +SGS D+ V
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD--VLSLSINSLNANMFISGSCDTTV 230
Query: 270 YLWELQ-SRKVVQKLEGHTDPVISVASHPTENIIASGALD 308
            LW+L+ + + V+   GH   + SV   P      +G+ D
Sbjct: 231 RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 118/296 (39%), Gaps = 39/296 (13%)
Query: 17  QTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQGV 76
           + L GH   +S +  S +     SSS DK                     ++F GH+  V
Sbjct: 70  KALTGHNHFVSDLALSQENCFAISSSWDK--------TLRLWDLRTGTTYKRFVGHQSEV 121
Query: 77  SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTL--IGHTNYVFCVNFNP---QSNMI- 130
             + FS D+R ++SA  ++ I+LW++       +     H+++V CV ++P    +N + 
Sbjct: 122 YSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQ 181
Query: 131 ------VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW 184
                  S  +D  +++W+    +      AH   V  +  + +G  I T   D    IW
Sbjct: 182 PFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Query: 185 DA-STGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
           D  +  +  +    D    ++ + F+P  +++ VGT D  ++++N  T          + 
Sbjct: 241 DILNLTYPQREF--DAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMT---------QSK 288
Query: 244 SKYCISSTFSVTNGKYIVSGSEDSCVYL-WELQSRKVVQKLEGHTDPVISVASHPT 298
           +  C      +T  +    G    C  L W    +K+     G TD VI   S  T
Sbjct: 289 APVCTIEAEPITKAEG-QKGKNPQCTSLAWNALGKKL---FAGFTDGVIRTFSFET 340

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 129/276 (46%), Gaps = 32/276 (11%)
Query: 71  GHEQGVSDLV--FSS----DSRFLVSASDDKTIRLWDVPT-------ATCLKTLIGHTNY 117
           GH   V+ +V  FS     DS  L+S S DKT+ +W +             K L GH ++
Sbjct: 19  GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF 78
Query: 118 VFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY 177
           V  +  + ++   +S ++D+T+R+WD++TG   K    H   V +V F+ D   I+++  
Sbjct: 79  VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA 138
Query: 178 DGLCRIWDASTGHCMKTLIDDENPP--VSFVKFSPNGK-----------FILVGTLDNTL 224
           +   ++W+   G C  +  + EN    VS V++SP  K           F  VG  D  L
Sbjct: 139 EREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG-WDGRL 196
Query: 225 RLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE 284
           ++WN +  +I  T+  H ++   +S +    NGKYI +G +D  + +W++ +    Q+  
Sbjct: 197 KVWN-TNFQIRYTFKAHESNVNHLSIS---PNGKYIATGGKDKKLLIWDILNLTYPQREF 252
Query: 285 GHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK 320
                +  +A +P    +A G     +   + TQ K
Sbjct: 253 DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 10/206 (4%)
Query: 72  HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS--NM 129
           H   +S   F++    +++AS D T  LWDV +   L++  GH   V C++  P    N 
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 130 IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG 189
            VSG  D+   +WD+++G+C++    H   V +V +   G    + S D  CR++D    
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
Query: 190 HCMKTLIDDENPPV---SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKY 246
              +  I  +   +   S V FS +G+ +  G  D T+ +W+   G  +    GH N   
Sbjct: 273 R--EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR-- 328
Query: 247 CISSTFSVTNGKYIVSGSEDSCVYLW 272
            +S+     +G    SGS D  + +W
Sbjct: 329 -VSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 6/211 (2%)
Query: 109 KTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF--N 166
           K++  HTNY+   +F      I++ + D T  +WDV++G+ L+    H   V  +D   +
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 167 RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL 226
             G   V+   D    +WD  +G C++     E+  V+ V++ P+G     G+ D T RL
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRL 266
Query: 227 WNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGH 286
           ++    + +  Y+  +      S  FS++ G+ + +G  D  + +W++     V  L GH
Sbjct: 267 YDLRADREVAIYSKESIIFGASSVDFSLS-GRLLFAGYNDYTINVWDVLKGSRVSILFGH 325
Query: 287 TDPVISVASHPTENIIASGALDNDRTVKIWT 317
            + V ++   P      SG+ D+  T+++W 
Sbjct: 326 ENRVSTLRVSPDGTAFCSGSWDH--TLRVWA 354

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 12/259 (4%)
Query: 15  LTQTLNGHLRAISSVKFSHDGRLLASSSADKXXXXXXXXXXXXXXXXXXXXLQKFTGHEQ 74
           L  +L GH   + SV  SH   + ASSS D                     +  +T    
Sbjct: 72  LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT---- 127
Query: 75  GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA 134
               L FS DS++L + +    + ++ V +     +L     ++  + ++P    + SGA
Sbjct: 128 ----LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183
Query: 135 FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKT 194
            D  + I+D+ TGK L  L  H+ P+ ++ F+ D  ++VT+S DG  +I+D    +   T
Sbjct: 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT 243
Query: 195 LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV 254
           L       V  V F P+    +  + D ++++W+  T   + T+  H +  + +      
Sbjct: 244 L-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN--- 299
Query: 255 TNGKYIVSGSEDSCVYLWE 273
            NG  IVS  +D  +++++
Sbjct: 300 GNGSKIVSVGDDQEIHIYD 318

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 103/198 (52%), Gaps = 10/198 (5%)
Query: 122 NFNPQSNMIVSGAFDETVRIWDVKTGKC--LKVLPAHSDPVTAVDFNRDGTMIVTSSYDG 179
           N    S  +V+G+ D+ V++W  +  +      L  H   V +VD +    +  +SS D 
Sbjct: 43  NKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102
Query: 180 LCRIWDASTGHCMKTLIDDENPPVSF-VKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY 238
             R+WD   G  +K++  D  P  ++ + FSP+ +++  GT    + ++   +GK  K Y
Sbjct: 103 HIRLWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEY 158
Query: 239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT 298
           +  T  K+ +S  +S  +GKY+ SG+ D  + ++++ + K++  LEGH  P+ S+   P 
Sbjct: 159 SLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Query: 299 ENIIASGALDNDRTVKIW 316
             ++ + +  +D  +KI+
Sbjct: 218 SQLLVTAS--DDGYIKIY 233

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 19/251 (7%)
Query: 76  VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF 135
           +S + +  +  +L   +    ++LWDV     L+ +  H+  V  +++N  S ++ SG+ 
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSR 207
Query: 136 DETVRIWDVKTGKC-LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC--- 191
              +   DV+  +  +  L  HS  V  + +  DG  + +   D L  +W ++ G     
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 267
Query: 192 -MKTLIDDENPPVSFVKFSPNGKFILV---GTLDNTLRLWNYSTGKILKTYTGHTNSKYC 247
            ++T    +   V  V + P    +L    GT D  +R+WN  +G  L     H+     
Sbjct: 268 PLQTFTQHQGA-VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---- 322
Query: 248 ISSTFSVTNGKYIVSGS--EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG 305
           + S     + K ++SG     + + +W+  +   V +L+GHT  V+S+   P    +AS 
Sbjct: 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 382
Query: 306 ALDNDRTVKIW 316
           A D   T+++W
Sbjct: 383 AADE--TLRLW 391

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 215 ILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL 274
           +L   LDN++ LW+ S+G IL+        +Y ISS   +  G Y+  G+  + V LW++
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEY-ISSVAWIKEGNYLAVGTSSAEVQLWDV 176
Query: 275 QSRKVVQKLEGHTDPVISVA 294
           Q +K ++ +  H+  V S++
Sbjct: 177 QQQKRLRNMTSHSARVGSLS 196

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 19/251 (7%)
Query: 76  VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF 135
           +S + +  +  +L   +    ++LWDV     L+ +  H+  V  +++N  S ++ SG+ 
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSR 218
Query: 136 DETVRIWDVKTGKC-LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC--- 191
              +   DV+  +  +  L  HS  V  + +  DG  + +   D L  +W ++ G     
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 278
Query: 192 -MKTLIDDENPPVSFVKFSPNGKFILV---GTLDNTLRLWNYSTGKILKTYTGHTNSKYC 247
            ++T    +   V  V + P    +L    GT D  +R+WN  +G  L     H+     
Sbjct: 279 PLQTFTQHQGA-VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---- 333
Query: 248 ISSTFSVTNGKYIVSGS--EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG 305
           + S     + K ++SG     + + +W+  +   V +L+GHT  V+S+   P    +AS 
Sbjct: 334 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 393
Query: 306 ALDNDRTVKIW 316
           A D   T+++W
Sbjct: 394 AADE--TLRLW 402

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 215 ILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL 274
           +L   LDN++ LW+ S+G IL+        +Y ISS   +  G Y+  G+  + V LW++
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEY-ISSVAWIKEGNYLAVGTSSAEVQLWDV 187
Query: 275 QSRKVVQKLEGHTDPVISVA 294
           Q +K ++ +  H+  V S++
Sbjct: 188 QQQKRLRNMTSHSARVGSLS 207

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 19/251 (7%)
Query: 76  VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF 135
           +S + +  +  +L   +    ++LWDV     L+ +  H+  V  +++N  S ++ SG+ 
Sbjct: 70  ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSR 127
Query: 136 DETVRIWDVKTGKC-LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC--- 191
              +   DV+  +  +  L  HS  V  + +  DG  + +   D L  +W ++ G     
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 187
Query: 192 -MKTLIDDENPPVSFVKFSPNGKFILV---GTLDNTLRLWNYSTGKILKTYTGHTNSKYC 247
            ++T    +   V  V + P    +L    GT D  +R+WN  +G  L     H+     
Sbjct: 188 PLQTFTQHQGA-VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---- 242
Query: 248 ISSTFSVTNGKYIVSGS--EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG 305
           + S     + K ++SG     + + +W+  +   V +L+GHT  V+S+   P    +AS 
Sbjct: 243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 302
Query: 306 ALDNDRTVKIW 316
           A   D T+++W
Sbjct: 303 AA--DETLRLW 311

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 215 ILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL 274
           +L   LDN++ LW+ S+G IL+        +Y ISS   +  G Y+  G+  + V LW++
Sbjct: 38  VLAVALDNSVYLWSASSGDILQLLQMEQPGEY-ISSVAWIKEGNYLAVGTSSAEVQLWDV 96
Query: 275 QSRKVVQKLEGHTDPVISVA 294
           Q +K ++ +  H+  V S++
Sbjct: 97  QQQKRLRNMTSHSARVGSLS 116

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 121/259 (46%), Gaps = 25/259 (9%)
Query: 69  FTGHEQG-VSDLVFSSDSRFLVSASDDKTIR---LWDVPTATCLKTLIGHTNYVFCVNFN 124
           +TG  QG ++ + + S+   L+    D  I    L+       L TLIGH   V  ++F 
Sbjct: 56  YTG--QGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSF- 112
Query: 125 PQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPV---TAVDFNRDGTMIVTSSYDGLC 181
            Q  +++SG++D+T ++W  K G  +  L AH+  V     V F+ +    +T+S D   
Sbjct: 113 -QDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSEN--KFLTASADKTI 167
Query: 182 RIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH 241
           ++W       +KT     N  V  +    +G FI     D  ++L +  TG +L+TY GH
Sbjct: 168 KLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGH 224
Query: 242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENI 301
            +  YCI     + NG  IVS  ED  V +W  ++  + Q +      + SV      +I
Sbjct: 225 ESFVYCIK---LLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDI 280
Query: 302 IASGALDNDRTVKIWTQEK 320
           I   +   D  V+I++QEK
Sbjct: 281 IVGSS---DNLVRIFSQEK 296

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 17/249 (6%)
Query: 76  VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF 135
           V+ + +S D  FL     +  + ++DV + T L+T+ GH   V C+++N   +++ SG+ 
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSR 194
Query: 136 DETVRIWDVKTGK-CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKT 194
              +   DV+     +  L  HS  V  + +  DG  + +   D + +IWDA +    K 
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-IPKF 253
Query: 195 LIDDENPPVSFVKFSPNGKFILV---GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
              + N  V  V + P    +L    GT+D  +  WN +TG  + T    +     I S 
Sbjct: 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP 313
Query: 252 FSVTNGKYIVS--GSEDSCVYLWELQSRKVVQKLE--GHTDPVISVASHPTENIIASGAL 307
            S    K I+S  G  D+ + +W   S  + ++++   H   V+  A  P   I+++ A 
Sbjct: 314 HS----KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA- 368
Query: 308 DNDRTVKIW 316
            +D  +K W
Sbjct: 369 -SDENLKFW 376

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT 242
           +W+A +G        DE+  V+ VK+S +G F+ VG  +  + +++  +   L+T  GH 
Sbjct: 117 VWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ 176
Query: 243 NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ-SRKVVQKLEGHTDPVISVASHPTENI 301
               C+S      N   + SGS    ++  +++ +   +  L+GH+  V  +A       
Sbjct: 177 ARVGCLS-----WNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ 231
Query: 302 IASGALDNDRTVKIW 316
           +ASG   ND  V+IW
Sbjct: 232 LASGG--NDNVVQIW 244

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 60/221 (27%)
Query: 115 TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT 174
           TN V C+ ++   N IV+G  +  +R+W+ KTG  L VL  H  P+ +V +N+DGT I++
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 175 SSYDGLCRIWDASTGHCMKTL---------------------------IDDE-------- 199
              + +  +W+  +G  M+                             +DD+        
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 200 --------------------NPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
                               + P+S ++F+   K +L  + D TLR+W+   G     + 
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV 280
           GH+ S   I S   V + K ++S S D  V LW L+   ++
Sbjct: 287 GHSQS---IVSASWVGDDK-VISCSMDGSVRLWSLKQNTLL 323

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 71  GHEQGVSDLVFSSDSRFLVSASDDKTIRLW--DVPTATCLKTLIGHTNYVFCVNFNPQSN 128
           GH++ V  + +S    +L SAS D T  +W  +     C+ TL GH N V  V + P  N
Sbjct: 59  GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 129 MIVSGAFDETVRIWDVKTG---KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
           ++ + + D++V +W+V      +C+ VL +H+  V  V ++    ++ ++SYD   +++ 
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 186 ASTGH--CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 227
                  C  TL   E+  V  + F P+G+ +   + D T+R+W
Sbjct: 179 EEEDDWVCCATLEGHES-TVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 150 LKVLPAHSDP-VTAVDFNRDGTMIVTSSYDGLCRIW--DASTGHCMKTLIDDENPPVSFV 206
           L  +PAH D     + +N  GT++ +   D   RIW  +  +  C   L +     V  V
Sbjct: 8   LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 207 KFSPNGKFILVGTLDNTLRLW--NYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
            +SP G ++   + D T  +W  N    + + T  GH N    + S     +G  + + S
Sbjct: 68  AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE---VKSVAWAPSGNLLATCS 124
Query: 265 EDSCVYLWELQSR---KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEKE 321
            D  V++WE+      + V  L  HT  V  V  HP++ ++AS + D+  TVK++ +E++
Sbjct: 125 RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD--TVKLYREEED 182

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 71  GHEQGVSDLVFSS-DSRFLVSASDDKTIRLWDVPTATCLK-------TLIGHTNYVFCVN 122
           GH   V D+ +   +   + S S+D T+ +W++P    +        TL GHT  V  V 
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 123 FNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPA--HSDPVTAVDFNRDGTMIVTSSYDG 179
           ++P + N+++S   D  + +WDV TG  +  L    H D + +VD++RDG +I TS  D 
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 180 LCRIWDASTG 189
             R+ +   G
Sbjct: 199 RVRVIEPRKG 208

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVS 262
           ++ +  +  G   LV  L  T R+      K +    GHT     I+  +   N   I S
Sbjct: 47  MALIXEASGGGAFLVLPLGKTGRV-----DKNVPLVXGHTAPVLDIA--WXPHNDNVIAS 99
Query: 263 GSEDSCVYLWE-------LQSRKVVQKLEGHTDPVISVASHPT-ENIIASGALDNDRTVK 314
           GSED  V +WE       L  R+ V  LEGHT  V  VA HPT +N++ S   DN   + 
Sbjct: 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDN--VIL 157
Query: 315 IW 316
           +W
Sbjct: 158 VW 159

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 71  GHEQGVSDLVFSS-DSRFLVSASDDKTIRLWDVPTATCLK-------TLIGHTNYVFCVN 122
           GH   V D+ +   +   + S S+D T+ +W++P    +        TL GHT  V  V 
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 123 FNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPA--HSDPVTAVDFNRDGTMIVTSSYDG 179
           ++P + N+++S   D  + +WDV TG  +  L    H D + +VD++RDG +I TS  D 
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 180 LCRIWDASTG 189
             R+ +   G
Sbjct: 199 RVRVIEPRKG 208

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 231 TGKILKTYT---GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE-------LQSRKVV 280
           TG++ K      GHT     I+  +   N   I SGSED  V +WE       L  R+ V
Sbjct: 67  TGRVDKNVPLVCGHTAPVLDIA--WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV 124
Query: 281 QKLEGHTDPVISVASHPT-ENIIASGALDNDRTVKIW 316
             LEGHT  V  VA HPT +N++ S   DN   + +W
Sbjct: 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDN--VILVW 159

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 21/211 (9%)
Query: 81  FSSDSRFLVSASDDKTIRL----WDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD 136
           F      L + S D+ I+L    +D  T   +     H   +  V + P ++++ +G+FD
Sbjct: 20  FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79
Query: 137 ETVRIWDVKTGK-------CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG 189
            TV IW  +           L ++  H + V  V ++ DG  + T S D    IW+    
Sbjct: 80  STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139
Query: 190 ----HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW-NYSTG-KILKTYTGHTN 243
                C+ +++ + +  V  V + P+   +   + D+T+R+W +Y    + +    GH  
Sbjct: 140 GEEYECI-SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG 198
Query: 244 SKYCISSTFSVTNGKY-IVSGSEDSCVYLWE 273
           + +  SS F  T G + + SGS+DS V +W+
Sbjct: 199 TVW--SSDFDKTEGVFRLCSGSDDSTVRVWK 227

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 26/188 (13%)
Query: 113 GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI 172
            H + +  + F P    ++S + D  ++IW VK G   + L  H   VT +     G  +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 173 VTSSYDGLCRIWDASTGHCMKTLIDDENP-----------------------PVSFVKFS 209
           +++S DG  R+W+  TG  + T    ENP                         + ++F 
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 253
Query: 210 PNGKFILVGTLDNTLRLWN-YSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSC 268
             GK+++ G +   + + N +S  + ++  +  T S  C S T    N  YI +G E+  
Sbjct: 254 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS--CNSLTVDGNNANYIYAGYENGM 311
Query: 269 VYLWELQS 276
           +  W+L+S
Sbjct: 312 LAQWDLRS 319

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 26/188 (13%)
Query: 113 GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI 172
            H + +  + F P    ++S + D  ++IW VK G   + L  H   VT +     G  +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 173 VTSSYDGLCRIWDASTGHCMKTLIDDENP-----------------------PVSFVKFS 209
           +++S DG  R+W+  TG  + T    ENP                         + ++F 
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256
Query: 210 PNGKFILVGTLDNTLRLWN-YSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSC 268
             GK+++ G +   + + N +S  + ++  +  T S  C S T    N  YI +G E+  
Sbjct: 257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS--CNSLTVDGNNANYIYAGYENGM 314
Query: 269 VYLWELQS 276
           +  W+L+S
Sbjct: 315 LAQWDLRS 322

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 31/226 (13%)
Query: 69  FTGHEQGVSDLVFSSDSRF-LVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS 127
            TG  + ++ + F     F ++S SDD T+ +++ P      T   HT +V  V +NP  
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 128 NMIVSGAFDETVRIWDVKTGKCLKVLP-------AHSDPVTAVDFNRDGTMIVTSSYDGL 180
           ++  S   D T+ +++   G    V         AHS  V  + ++ DGT I ++S D  
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 181 CRIWDASTGHCMKTL-----IDDENPPV-----SFVKFSPNGKFILVGTLDNTLRLWNYS 230
            +IW+ +T    KT+     I+D+   +     + V  S NG    V          N  
Sbjct: 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV----------NPE 312
Query: 231 TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS 276
            G I +   GH  +   +SS+    +GK + S   +  +  W++ +
Sbjct: 313 LGSIDQVRYGHNKAITALSSS---ADGKTLFSADAEGHINSWDIST 355

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 28/212 (13%)
Query: 136 DETVRIWDVK--TGKCLKVLPAHSDPVTAVDFN--RDGTMIVTSSYDGLCRIWDASTGHC 191
           D+T++I++V+  T K +  L  H  PV  VD+   + GT++ + SYDG   IW    G  
Sbjct: 30  DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89
Query: 192 MKTLIDD-ENPPVSFVKFSPN--GKFILVGTLDNTLRLWNYSTGK-----ILKTYTGHTN 243
            +  +    +  V+ V+++P+  G  +LV + D  + +  +         I+  +    N
Sbjct: 90  SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149
Query: 244 SKYCISSTFS-------VTNGKYIVSGSEDSCVYLW----ELQSRKVVQKLEGHTDPVIS 292
           S     +T             +  V+G  D+ V +W    + Q+  +   LEGH+D V  
Sbjct: 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209
Query: 293 VASHPT---ENIIASGALDNDRTVKIWTQEKE 321
           VA  PT    + +AS  +  DRT  IWTQ+ E
Sbjct: 210 VAWSPTVLLRSYMAS--VSQDRTCIIWTQDNE 239

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 136 DETVRIWDVK--TGKCLKVLPAHSDPVTAVDFNRD--GTMIVTSSYDGLCRIWDASTGHC 191
           D+T++I++V+  T K +  L  H  PV  VD+     GT++ + SYDG   IW    G  
Sbjct: 30  DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRW 89
Query: 192 MKTLIDD-ENPPVSFVKFSPN--GKFILVGTLDNTLRLWNYSTGK-----ILKTYTGHTN 243
            +  +    +  V+ V+++P+  G  +LV + D  + +  +         I+  +    N
Sbjct: 90  SQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149
Query: 244 SKYCISSTFS-------VTNGKYIVSGSEDSCVYLW----ELQSRKVVQKLEGHTDPVIS 292
           S     +T             +  V+G  D+ V +W    + Q+  +   LEGH+D V  
Sbjct: 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209
Query: 293 VASHPTENIIASGA-LDNDRTVKIWTQEKE 321
           VA  PT  + +  A +  DRT  IWTQ+ E
Sbjct: 210 VAWSPTVLLRSYXASVSQDRTCIIWTQDNE 239

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 113/265 (42%), Gaps = 25/265 (9%)
Query: 68  KFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS 127
           K TGHE+ ++ + ++ +   L S S D +  +W       L TL GHT  ++ ++ +  +
Sbjct: 27  KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 128 NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT-----SSYDGLCR 182
              V+G+ D ++++WDV  G+C+    +   PV  V+F+  G   +          G   
Sbjct: 87  KYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145
Query: 183 IWDASTGHCMKTLIDDENPPV------------SFVKFSPNGKFILVGTLDNTLRLWNYS 230
           I++         L      P+            +   +S  GK+I+ G  D  +  ++ S
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205
Query: 231 TG-KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD- 288
              + + +   H  S   IS      +  Y ++ S D+  +L ++ + +V++K E  TD 
Sbjct: 206 NNYEYVDSIDLHEKS---ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDC 260
Query: 289 PVISVASHPTENIIASGALDNDRTV 313
           P+ +    P +  I  G     + V
Sbjct: 261 PLNTAVITPLKEFIILGGGQEAKDV 285

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 68/118 (57%), Gaps = 9/118 (7%)
Query: 118 VFCVNFNPQS---NMIVSGAFDETVRIWDVK-TGKCL-KVLPAHSDPVTAVDFNRDGTMI 172
           + C++F+P +   N +++G++   VR W+V+ +G+ + K    H+ PV  V ++ DG+ +
Sbjct: 42  IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKF--SPNGKFILVGTLDNTLRLWN 228
            T+S D   ++WD S+   ++  I   + PV  + +  +PN   ++ G+ D TL+ W+
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 62/273 (22%)
Query: 71  GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTLIGHTNYVFCVNF-NPQ- 126
            H + + D V     + L + S DKTI++++V   T   + TL GH   V+ V++ +P+ 
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 127 SNMIVSGAFDETVRIWDVKTGKC--LKVLPAHSDPVTAVDF--NRDGTMIVTSSYDGLCR 182
             ++ S ++D  V IW  + G+   + V   HS  V +V +  +  G +++ +S DG   
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG--- 123
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT 242
                               VS V+F  NG                 ++  I+  +    
Sbjct: 124 -------------------KVSVVEFKENGT----------------TSPIIIDAHAIGV 148
Query: 243 NSKYCISSTFS-------VTNGKYIVSGSEDSCVYLW----ELQSRKVVQKLEGHTDPVI 291
           NS     +T             +  V+G  D+ V +W    + Q+  +   LEGH+D V 
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208
Query: 292 SVASHPT---ENIIASGALDNDRTVKIWTQEKE 321
            VA  PT    + +AS  +  DRT  IWTQ+ E
Sbjct: 209 DVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNE 239

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 62/273 (22%)
Query: 71  GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTLIGHTNYVFCVNF-NPQ- 126
            H + + D V     + L + S DKTI++++V   T   + TL GH   V+ V++ +P+ 
Sbjct: 9   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 127 SNMIVSGAFDETVRIWDVKTGKC--LKVLPAHSDPVTAVDF--NRDGTMIVTSSYDGLCR 182
             ++ S ++D  V IW  + G+   + V   HS  V +V +  +  G +++ +S DG   
Sbjct: 69  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG--- 125
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT 242
                               VS V+F  NG                 ++  I+  +    
Sbjct: 126 -------------------KVSVVEFKENGT----------------TSPIIIDAHAIGV 150
Query: 243 NSKYCISSTFS-------VTNGKYIVSGSEDSCVYLW----ELQSRKVVQKLEGHTDPVI 291
           NS     +T             +  V+G  D+ V +W    + Q+  +   LEGH+D V 
Sbjct: 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 210
Query: 292 SVASHPT---ENIIASGALDNDRTVKIWTQEKE 321
            VA  PT    + +AS  +  DRT  IWTQ+ E
Sbjct: 211 DVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNE 241

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 9/197 (4%)
Query: 79  LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDET 138
           L  S DS+   S   D  I +WD+   T ++   GHT+   C++ +     + +G  D T
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 139 VRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD 198
           VR WD++ G+ L+     S  + ++ +   G  +          +   +     K  +  
Sbjct: 207 VRSWDLREGRQLQQHDFTSQ-IFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--KYQLHL 263
Query: 199 ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK-ILKTYTGHTNSKYCISSTFSVTNG 257
               V  +KF+  GK+ +    DN L  W    G  I ++      S   +S   SV + 
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDD- 318
Query: 258 KYIVSGSEDSCVYLWEL 274
           KYIV+GS D    ++E+
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 62/273 (22%)
Query: 71  GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTLIGHTNYVFCVNF-NPQ- 126
            H + + D V     + L + S DKTI++++V   T   + TL GH   V+ V++ +P+ 
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 127 SNMIVSGAFDETVRIWDVKTGKC--LKVLPAHSDPVTAVDF--NRDGTMIVTSSYDGLCR 182
             ++ S ++D  V IW  + G+   + V   HS  V +V +  +  G +++ +S DG   
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG--- 123
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT 242
                               VS V+F  NG                 ++  I+  +    
Sbjct: 124 -------------------KVSVVEFKENGT----------------TSPIIIDAHAIGV 148
Query: 243 NSKYCISSTFS-------VTNGKYIVSGSEDSCVYLWEL----QSRKVVQKLEGHTDPVI 291
           NS     +T             +  V+G  D+ V +W+     Q+  +   LEGH+D V 
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208
Query: 292 SVASHPT---ENIIASGALDNDRTVKIWTQEKE 321
            VA  PT    + +AS  +  DRT  IWTQ+ E
Sbjct: 209 DVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNE 239

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 115/314 (36%), Gaps = 77/314 (24%)
Query: 72  HEQGVSDL-VFSSDSRFLVSASDDKTIRLWDVPTA------TCLKTL-IG------HTNY 117
           H  G++ L +   + R+++S   D  I L+D+  +      TC     IG      H   
Sbjct: 42  HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 118 VFCVNFNPQ-SNMIVSGAFDETVRIW---------------------------------- 142
           V  V + P  + M  S +FD+T+++W                                  
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 143 ----------DVKTGKCLKVLPAHSDPVTAVDFN-RDGTMIVTSSYDGLCRIWDASTGH- 190
                     D+K+G C  +L  H   + AV ++ R   ++ T+S D   ++WD      
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Query: 191 CMKTLIDD--------------ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILK 236
           C+ TL                  N  V+ + F+ +G  +L    DN +RLWN S G+   
Sbjct: 222 CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL 281
Query: 237 TYTGH--TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVA 294
              G    NSK  +  T S       V     S + ++ + S + +  L+GH   V    
Sbjct: 282 VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV 341
Query: 295 SHPTENIIASGALD 308
                  + SG+ D
Sbjct: 342 FQSNFQELYSGSRD 355

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 23/220 (10%)
Query: 66  LQKFTGHEQGVSDLVFSSDSRFL--VSASDDKTIRLWDVPT---ATCLKTLIGHTNYVFC 120
           L + +GH Q + +      SR +  ++  DD ++  +  P    +   +T     ++V  
Sbjct: 153 LGEVSGHSQRI-NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD 211
Query: 121 VNFNPQSN-MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR---DGTMIVTSS 176
           V F+P S   +++   D  +  +D K+G+ LK +    +PV    F     D     T  
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG 271
Query: 177 YDGLCRIWDASTGHCMKTLIDDE----NPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG 232
            D   R+WD +T  C++    D+    N  V  V  + NG+ I + +LD TL  +     
Sbjct: 272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGNGRIISL-SLDGTLNFYELGHD 329
Query: 233 KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLW 272
           ++LKT +GH      ++          ++SGS D  +  W
Sbjct: 330 EVLKTISGHNKGITALTVN-------PLISGSYDGRIMEW 362

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 87  FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK 145
            L  A     IR+ +  T  C+K  +GH N +  + F+P+  N+++S + D  +R+W+++
Sbjct: 87  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 146 TGKCLKV---LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--DEN 200
           T   + +   +  H D V + D++  G  I++   D   ++W  ++   M  + +  D N
Sbjct: 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 206
Query: 201 P 201
           P
Sbjct: 207 P 207

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 114 HTNYVFCVNFNPQSN----MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF---- 165
           H   +F V FN  S     ++ +      V +++  +   +++L ++ D     +F    
Sbjct: 17  HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 76
Query: 166 -----NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-T 219
                N    ++  +   G+ RI +  T  C+K  +   N  ++ +KF P    +L+  +
Sbjct: 77  WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA-INELKFHPRDPNLLLSVS 135
Query: 220 LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV 279
            D+ LRLWN  T  ++  + G    +  + S      G+ I+S   D  + LW + S+++
Sbjct: 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 195
Query: 280 VQKLEGHTD 288
           +  ++   D
Sbjct: 196 MNAIKESYD 204

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 87  FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK 145
            L  A     IR+ +  T  C+K  +GH N +  + F+P+  N+++S + D  +R+W+++
Sbjct: 82  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 146 TGKCLKV---LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--DEN 200
           T   + +   +  H D V + D++  G  I++   D   ++W  ++   M  + +  D N
Sbjct: 142 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 201
Query: 201 P 201
           P
Sbjct: 202 P 202

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 114 HTNYVFCVNFNPQSN----MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF---- 165
           H   +F V FN  S     ++ +      V +++  +   +++L ++ D     +F    
Sbjct: 12  HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 71
Query: 166 -----NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-T 219
                N    ++  +   G+ RI +  T  C+K  +   N  ++ +KF P    +L+  +
Sbjct: 72  WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA-INELKFHPRDPNLLLSVS 130
Query: 220 LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV 279
            D+ LRLWN  T  ++  + G    +  + S      G+ I+S   D  + LW + S+++
Sbjct: 131 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 190
Query: 280 VQKLEGHTD 288
           +  ++   D
Sbjct: 191 MNAIKESYD 199

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 87  FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK 145
            L  A     IR+ +  T  C+K  +GH N +  + F+P+  N+++S + D  +R+W+++
Sbjct: 86  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 146 TGKCLKV---LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--DEN 200
           T   + +   +  H D V + D++  G  I++   D   ++W  ++   M  + +  D N
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 205
Query: 201 P 201
           P
Sbjct: 206 P 206

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 114 HTNYVFCVNFNPQSN----MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF---- 165
           H   +F V FN  S     ++ +      V +++  +   +++L ++ D     +F    
Sbjct: 16  HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 75
Query: 166 -----NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-T 219
                N    ++  +   G+ RI +  T  C+K  +   N  ++ +KF P    +L+  +
Sbjct: 76  WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA-INELKFHPRDPNLLLSVS 134
Query: 220 LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV 279
            D+ LRLWN  T  ++  + G    +  + S      G+ I+S   D  + LW + S+++
Sbjct: 135 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Query: 280 VQKLEGHTD 288
           +  ++   D
Sbjct: 195 MNAIKESYD 203

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 87  FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK 145
            L  A     IR+ +  T  C+K  +GH N +  + F+P+  N+++S + D  +R+W+++
Sbjct: 86  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 146 TGKCLKV---LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--DEN 200
           T   + +   +  H D V + D++  G  I++   D   ++W  ++   M  + +  D N
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 205
Query: 201 P 201
           P
Sbjct: 206 P 206

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 114 HTNYVFCVNFNPQSN----MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF---- 165
           H   +F V FN  S     ++ +      V +++  +   +++L ++ D     +F    
Sbjct: 16  HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 75
Query: 166 -----NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-T 219
                N    ++  +   G+ RI +  T  C+K  +   N  ++ +KF P    +L+  +
Sbjct: 76  WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA-INELKFHPRDPNLLLSVS 134
Query: 220 LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV 279
            D+ LRLWN  T  ++  + G    +  + S      G+ I+S   D  + LW + S+++
Sbjct: 135 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Query: 280 VQKLEGHTD 288
           +  ++   D
Sbjct: 195 MNAIKESYD 203

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 87  FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK 145
            L  A     IR+ +  T  C+K  +GH N +  + F+P+  N+++S + D  +R+W+++
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 146 TGKCLKV---LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--DEN 200
           T   + +   +  H D V + D++  G  I++   D   ++W  ++   M  + +  D N
Sbjct: 183 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 242
Query: 201 P 201
           P
Sbjct: 243 P 243

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 114 HTNYVFCVNFNPQSN----MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF---- 165
           H   +F V FN  S     ++ +      V +++  +   +++L ++ D     +F    
Sbjct: 53  HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 112
Query: 166 -----NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-T 219
                N    ++  +   G+ RI +  T  C+K  +   N  ++ +KF P    +L+  +
Sbjct: 113 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA-INELKFHPRDPNLLLSVS 171
Query: 220 LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV 279
            D+ LRLWN  T  ++  + G    +  + S      G+ I+S   D  + LW + S+++
Sbjct: 172 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 231
Query: 280 VQKLEGHTD 288
           +  ++   D
Sbjct: 232 MNAIKESYD 240

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 68  KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVF 119
           +  GH++    L ++ + + +L+SASDD TI LWD+        +I       GHT  V 
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 120 CVNFN-PQSNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIV-T 174
            V ++    ++  S A D+ + IWD +   T K    + AH+  V  + FN     I+ T
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST-- 231
            S D    +WD           +     +  V++SP+ + IL  +  D  L +W+ S   
Sbjct: 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355
Query: 232 ------------GKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWEL 274
                        ++L  + GHT     IS      N  +I+ S SED+ + +W++
Sbjct: 356 EEQSTEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWIICSVSEDNIMQVWQM 408

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 43/220 (19%)
Query: 103 PTATCLK--TLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVK-TGKCLKVLPAHSD 158
           P+  C     L GH    + +++NP  N  ++S + D T+ +WD+  T K  +V+     
Sbjct: 167 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI----- 221
Query: 159 PVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG 218
                    D   I T    G   + +    H +   +        F   + + K ++  
Sbjct: 222 ---------DAKNIFT----GHTAVVEDVAWHLLHESL--------FGSVADDQKLMIWD 260
Query: 219 TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK 278
           T +N       +T K   T   HT    C+S  F+  +   + +GS D  V LW+L++ K
Sbjct: 261 TRNN-------NTSKPSHTVDAHTAEVNCLS--FNPYSEFILATGSADKTVALWDLRNLK 311
Query: 279 V-VQKLEGHTDPVISVASHP-TENIIASGALDNDRTVKIW 316
           + +   E H D +  V   P  E I+AS     DR + +W
Sbjct: 312 LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVW 349

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 68  KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVF 119
           +  GH++    L ++ + + +L+SASDD TI LWD+        +I       GHT  V 
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 120 CVNFN-PQSNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIV-T 174
            V ++    ++  S A D+ + IWD +   T K    + AH+  V  + FN     I+ T
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST-- 231
            S D    +WD           +     +  V++SP+ + IL  +  D  L +W+ S   
Sbjct: 300 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 359
Query: 232 ------------GKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWEL 274
                        ++L  + GHT     IS      N  +I+ S SED+ + +W++
Sbjct: 360 EEQSTEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWIICSVSEDNIMQVWQM 412

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 43/224 (19%)
Query: 103 PTATCLK--TLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVK-TGKCLKVLPAHSD 158
           P+  C     L GH    + +++NP  N  ++S + D T+ +WD+  T K  +V+     
Sbjct: 171 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI----- 225
Query: 159 PVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG 218
                    D   I T    G   + +    H +   +        F   + + K ++  
Sbjct: 226 ---------DAKNIFT----GHTAVVEDVAWHLLHESL--------FGSVADDQKLMIWD 264
Query: 219 TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK 278
           T +N       +T K   T   HT    C+S  F+  +   + +GS D  V LW+L++ K
Sbjct: 265 TRNN-------NTSKPSHTVDAHTAEVNCLS--FNPYSEFILATGSADKTVALWDLRNLK 315
Query: 279 V-VQKLEGHTDPVISVASHP-TENIIASGALDNDRTVKIWTQEK 320
           + +   E H D +  V   P  E I+AS     DR + +W   K
Sbjct: 316 LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSK 357

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 68  KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVF 119
           +  GH++    L ++ + + +L+SASDD TI LWD+        +I       GHT  V 
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 120 CVNFN-PQSNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIV-T 174
            V ++    ++  S A D+ + IWD +   T K    + AH+  V  + FN     I+ T
Sbjct: 238 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST-- 231
            S D    +WD           +     +  V++SP+ + IL  +  D  L +W+ S   
Sbjct: 298 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 357
Query: 232 ------------GKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWEL 274
                        ++L  + GHT     IS      N  +I+ S SED+ + +W++
Sbjct: 358 EEQSTEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWIICSVSEDNIMQVWQM 410

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 43/220 (19%)
Query: 103 PTATCLK--TLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVK-TGKCLKVLPAHSD 158
           P+  C     L GH    + +++NP  N  ++S + D T+ +WD+  T K  +V+     
Sbjct: 169 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI----- 223
Query: 159 PVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG 218
                    D   I T    G   + +    H +   +        F   + + K ++  
Sbjct: 224 ---------DAKNIFT----GHTAVVEDVAWHLLHESL--------FGSVADDQKLMIWD 262
Query: 219 TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK 278
           T +N       +T K   T   HT    C+S  F+  +   + +GS D  V LW+L++ K
Sbjct: 263 TRNN-------NTSKPSHTVDAHTAEVNCLS--FNPYSEFILATGSADKTVALWDLRNLK 313
Query: 279 V-VQKLEGHTDPVISVASHP-TENIIASGALDNDRTVKIW 316
           + +   E H D +  V   P  E I+AS     DR + +W
Sbjct: 314 LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVW 351

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 121/263 (46%), Gaps = 48/263 (18%)
Query: 66  LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP 125
           L+  +GH +G++ L  +     L+S S D  I  W   +         H+N +  ++ N 
Sbjct: 332 LKTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSXHQ-----DHSNLIVSLD-NS 381
Query: 126 QSNMIVSGAFDETVRIWDV---KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCR 182
           ++    S ++D+T+++  +   + G   KV  A++D  TAV  N D  +I+ S       
Sbjct: 382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSF------ 435
Query: 183 IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD-NTLRLWNYSTGKI---LKTY 238
                TG  +K++    N P S V  S N  ++ VG  + NT++++  S  ++   LKT 
Sbjct: 436 -----TGDIIKSV--RLNSPGSAVSLSQN--YVAVGLEEGNTIQVFKLSDLEVSFDLKTP 486
Query: 239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV-VQKLEGHTDPVISVASHP 297
                S   IS + +     YI +G     + L++LQSR+V   +    T  + +++  P
Sbjct: 487 LRAKPSYISISPSET-----YIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKP 541
Query: 298 T----------ENIIASGALDND 310
                      E+++A+G+LD +
Sbjct: 542 AEKGANEEEIEEDLVATGSLDTN 564

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 68  KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVF 119
           +  GH++    L ++S+ S  L+SASDD T+ LWD+        ++       GH+  V 
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 120 CVNFN-PQSNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIV-T 174
            V ++    ++  S A D+ + IWD +   T K   ++ AH+  V  + FN     I+ T
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST-- 231
            S D    +WD           +     +  V +SP+ + IL  +  D  L +W+ S   
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 232 ------------GKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWEL 274
                        ++L  + GHT     IS      N  +++ S SED+ + +W++
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWVICSVSEDNIMQIWQM 406

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 33/252 (13%)
Query: 68  KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVF 119
           +  GH++    L ++ + S  L+SASDD TI LWD+        ++       GHT  V 
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 120 CVNFN-PQSNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIV-T 174
            V+++    ++  S A D+ + IWD +   T K    + AH+  V  + FN     I+ T
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYS--- 230
            S D    +WD           +     +  V++SP+ + IL  +  D  L +W+ S   
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG 351
Query: 231 -----------TGKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWELQSRK 278
                        ++L  + GHT     IS      N  +++ S SED+ + +W++    
Sbjct: 352 EEQSPEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWVICSVSEDNIMQVWQMAENI 408
Query: 279 VV-QKLEGHTDP 289
              +  EG  DP
Sbjct: 409 YNDEDPEGSVDP 420

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 32/235 (13%)
Query: 68  KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVF 119
           +  GH++    L ++S+ S  L+SASDD T+ LWD+        ++       GH+  V 
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 120 CVNFN-PQSNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIV-T 174
            V ++    ++  S A D+ + IWD +   T K   ++ AH+  V  + FN     I+ T
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST-- 231
            S D    +WD           +     +  V +SP+ + IL  +  D  L +W+ S   
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 232 ------------GKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWE 273
                        ++L  + GHT     IS      N  +++ S SED+   +W+
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWVICSVSEDNIXQIWQ 405

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 29/233 (12%)
Query: 114 HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV--LPAHSDPVTAVDFNRD--G 169
           H + +     +     + + + D +V+I+DV+ G  + +  L  H  PV  V +     G
Sbjct: 12  HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 170 TMIVTSSYDGLCRIWDASTGHCMKTLID-DENPPVSFVKFSPN--GKFILVGTLDNTLRL 226
            ++ + SYD    IW    G   K+      +  V+ V ++P+  G  +  G+ D  + L
Sbjct: 72  NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
Query: 227 WNYS---TGKILKTYTGHTNSKYCISSTFSVTNG--------------KYIVSGSEDSCV 269
             Y+     ++ K    HT     +S   +V  G              K   SG  D+ +
Sbjct: 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLI 191
Query: 270 YLWELQSR---KVVQKLEGHTDPVISVASHPTENIIAS--GALDNDRTVKIWT 317
            LW+ +     K  QKLE H+D V  VA  P+  +  S   +   D  V IWT
Sbjct: 192 KLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 79  LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDE 137
           L  S+ SR +V+  +   + L ++     L  L  H   V  V  NP  +  + + + D+
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 138 TVRIWDVKT--GKC--LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK 193
           TV+IWD++   GK   L  LP H  PV A  F+ DG  ++T+      R++ AS   C  
Sbjct: 274 TVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332
Query: 194 TLIDDENPPVSFVKFSP 210
            LI   +P   F   +P
Sbjct: 333 GLI--PHPHRHFQHLTP 347

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 79  LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDE 137
           L  S+ SR +V+  +   + L ++     L  L  H   V  V  NP  +  + + + D+
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 138 TVRIWDVKT--GKC--LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK 193
           TV+IWD++   GK   L  LP H  PV A  F+ DG  ++T+      R++ AS   C  
Sbjct: 274 TVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332
Query: 194 TLIDDENPPVSFVKFSP 210
            LI   +P   F   +P
Sbjct: 333 GLI--PHPHRHFQHLTP 347

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 79  LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDE 137
           L  S+ SR +V+  +   + L ++     L  L  H   V  V  NP  +  + + + D+
Sbjct: 216 LDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 274
Query: 138 TVRIWDVKT--GKC--LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK 193
           TV+IWD++   GK   L  LP H  PV A  F+ DG  ++T+      R++ AS   C  
Sbjct: 275 TVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 333
Query: 194 TLIDDENPPVSFVKFSP 210
            LI   +P   F   +P
Sbjct: 334 GLI--PHPHRHFQHLTP 348

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 213 KFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYC------ISSTFSV-TNGKYIVSGSE 265
           + ILV +    + LW     + L        SK+C      I ST SV ++G   VSGS+
Sbjct: 94  RGILVASDSGAVELWELDENETLIV------SKFCKYEHDDIVSTVSVLSSGTQAVSGSK 147
Query: 266 DSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           D C+ +W+L  + V+     H   V  VA+ P ++ +     +++R + +W
Sbjct: 148 DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR-ILLW 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.88
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.83
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.81
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.78
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.78
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.77
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.76
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.76
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.72
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.71
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.68
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.68
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.67
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.66
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.63
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.63
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.61
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.6
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.6
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.59
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.58
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.52
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.51
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.51
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.51
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.5
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.5
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.37
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.36
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.34
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.33
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.33
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.32
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.31
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.3
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.3
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.27
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.25
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.24
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.22
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.19
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.16
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.14
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.09
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.09
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.08
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.08
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.03
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.03
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.03
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.02
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.99
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.99
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.98
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.97
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.96
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.95
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.94
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.91
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.9
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.89
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.87
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.85
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.82
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.8
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.79
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.79
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.77
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.77
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.77
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.76
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.74
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.7
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.69
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.66
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.66
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.64
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.6
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.56
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.5
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.49
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.49
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.49
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.47
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.43
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.42
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.41
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.34
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.33
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.3
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.3
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.29
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.25
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.2
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.15
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.14
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.08
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.07
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.98
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.98
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.96
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.91
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.91
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.86
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.84
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.76
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.73
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.67
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.55
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.51
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.49
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.47
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.43
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.42
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.36
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.33
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.31
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.23
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.17
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.15
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.11
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.08
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.07
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.05
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.9
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.86
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.83
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.74
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.55
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.4
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.36
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.35
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.02
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.84
3ott_A	758	Two-component system sensor histidine kinase; beta	95.21
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.02
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.77
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.61
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.48
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.09
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.83
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.44
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.32
3ott_A	758	Two-component system sensor histidine kinase; beta	91.43
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	90.39
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.13
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	89.92
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.92
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.56
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.28
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.15
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	86.49
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.31
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	82.19

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.3e-54  Score=354.19  Aligned_cols=299  Identities=68%  Similarity=1.160  Sum_probs=275.7

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      +.+...+.+|.+.|++++|+|+|++|++++.|+.+++|+...        ......+.+|...|.+++|+|++++|++++
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   84 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--------GKFEKTISGHKLGISDVAWSSDSNLLVSAS   84 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------CCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--------cccchhhccCCCceEEEEEcCCCCEEEEEC
Confidence            567788999999999999999999999999999999998743        234556788999999999999999999999


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      .|+.|++||+.+++++..+.+|...+.+++|+|++++|++++.|+.|++||+++++....+..|..++.+++|+|+++.+
T Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  164 (312)
T 4ery_A           85 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI  164 (312)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEE
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF  252 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  252 (321)
                      ++++.|+.|++||+++++....+...+...+..++|+|++++|++++.|+.|++||+++++.+..+.+|.....++...+
T Consensus       165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF  244 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred             EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence            99999999999999998887777666677899999999999999999999999999999999999988877665555566


Q ss_pred             EecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ..+++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.++|+.|++|+.+
T Consensus       245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            6678999999999999999999999999999999999999999999999999988788999999875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2e-52  Score=358.69  Aligned_cols=290  Identities=31%  Similarity=0.602  Sum_probs=263.9

Q ss_pred             eeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           16 TQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        16 ~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      ...+.+|..+|++++|+|++++|++|+.|+.|++|++...        .....+.+|...|.+++|+|++++|++|+.|+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~  172 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSGKLLASCSADM  172 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--------CCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCC
Confidence            4567899999999999999999999999999999987542        34567889999999999999999999999999


Q ss_pred             cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE
Q 020798           96 TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      +|++||+.+++++..+.+|...|.+++|+|++++|++++.|+.|++||++++.++..+..|...+.++.++|++..++++
T Consensus       173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~  252 (410)
T 1vyh_C          173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  252 (410)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC--------------------CCEEEEEecCCeEEEEeCCCCcEE
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN--------------------GKFILVGTLDNTLRLWNYSTGKIL  235 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------g~~l~~~~~d~~i~i~d~~~~~~~  235 (321)
                      +.|++|++||++++++...+ ..+...+.+++|+|+                    |.+|++++.|+.|++||+++++.+
T Consensus       253 s~D~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~  331 (410)
T 1vyh_C          253 SNDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  331 (410)
T ss_dssp             ETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             cCCCeEEEEECCCCceeeEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence            99999999999988776655 356678999999996                    678999999999999999999999


Q ss_pred             EEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEE
Q 020798          236 KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKI  315 (321)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~i  315 (321)
                      ..+.+|...+.++   ...+++.+|++|+.||.|++||+.+++.+..+.+|..+|++++|+|++.+|++|+.  |+.|++
T Consensus       332 ~~~~~h~~~v~~v---~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~--D~~i~v  406 (410)
T 1vyh_C          332 MTLVGHDNWVRGV---LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV--DQTVKV  406 (410)
T ss_dssp             EEEECCSSCEEEE---EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET--TSEEEE
T ss_pred             EEEECCCCcEEEE---EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC--CCcEEE
Confidence            9999988765544   33578999999999999999999999999999999999999999999999999994  589999


Q ss_pred             cccc
Q 020798          316 WTQE  319 (321)
Q Consensus       316 w~~~  319 (321)
                      |+..
T Consensus       407 W~~r  410 (410)
T 1vyh_C          407 WECR  410 (410)
T ss_dssp             EC--
T ss_pred             EeCC
Confidence            9863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.6e-52  Score=343.34  Aligned_cols=292  Identities=23%  Similarity=0.396  Sum_probs=261.3

Q ss_pred             eeeeccCCcccEEEEEECCC----CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE
Q 020798           15 LTQTLNGHLRAISSVKFSHD----GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~----g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~   90 (321)
                      +.+.+++|.+.|++++|+|+    +++|++|+.|+.+++|++....      ......+.+|...|.+++|+++++++++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~------~~~~~~l~gh~~~v~~~~~~~~~~~l~s   97 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER------LDLQWSLEGHQLGVVSVDISHTLPIAAS   97 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC------eeeeeeeccCCCCEEEEEECCCCCEEEE
Confidence            44678899999999999985    6799999999999999875321      1223457899999999999999999999


Q ss_pred             EeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC
Q 020798           91 ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT  170 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (321)
                      ++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++++.|+.|++||+++++....+..|...+.+++|+|+++
T Consensus        98 ~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~  177 (321)
T 3ow8_A           98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK  177 (321)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS
T ss_pred             EeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC
Confidence            99999999999999998888888998999999999999999999999999999999988888888999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEe
Q 020798          171 MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISS  250 (321)
Q Consensus       171 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  250 (321)
                      +|++++.|+.|++||+++++.+..+ ..+..++..++|+|++++|++++.|+.|++||+++++.+..+.+|...+.++. 
T Consensus       178 ~lasg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~-  255 (321)
T 3ow8_A          178 YLASGAIDGIINIFDIATGKLLHTL-EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA-  255 (321)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE-
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEE-cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE-
Confidence            9999999999999999998877665 34566789999999999999999999999999999999999998887655443 


Q ss_pred             EEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          251 TFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                        ..+++.+|++++.|+.|++||+.+++++..+.+|..+|.+++|+|++++|++++  .|+.|++||.
T Consensus       256 --~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~--~d~~i~vwd~  319 (321)
T 3ow8_A          256 --FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG--DDQEIHIYDC  319 (321)
T ss_dssp             --ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTCCEEEEEC
T ss_pred             --ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe--CCCeEEEEeC
Confidence              347899999999999999999999999999999999999999999999999998  4589999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.3e-51  Score=342.11  Aligned_cols=292  Identities=24%  Similarity=0.457  Sum_probs=257.1

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      ....+.+.+|.+.|++++|+|++++|++|+.|+.|++|+...        ...+..+..|...|.+++|+|++++|++|+
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  116 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT--------TNKVHAIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--------CCEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--------CCcceEeecCCccEEEEEECCCCCEEEEEe
Confidence            345678999999999999999999999999999999998753        234566778999999999999999999999


Q ss_pred             CCCcEEEEecCCc----ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC
Q 020798           93 DDKTIRLWDVPTA----TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        93 ~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      .|+.+++|++.+.    .....+.+|...+.++.|++++ .+++++.|+.|++||+++++....+..|...|.+++|+|+
T Consensus       117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  195 (340)
T 1got_B          117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD  195 (340)
T ss_dssp             TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC
Confidence            9999999999765    3455678999999999999876 5889999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEE
Q 020798          169 GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI  248 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  248 (321)
                      ++++++++.|+.|++||++++.+...+ ..+...+..++|+|++++|++++.|+.|++||+++++.+..+..+. ....+
T Consensus       196 ~~~l~sg~~d~~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-~~~~v  273 (340)
T 1got_B          196 TRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN-IICGI  273 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-CCSCE
T ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEEE-cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC-cccce
Confidence            999999999999999999988776665 3566789999999999999999999999999999988877765322 22224


Q ss_pred             EeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          249 SSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ......+++++|++|+.||.|++||+.+++.+..+.+|..+|.+++|+|++.+||+|+.  |+.|+|||
T Consensus       274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~--D~~i~iWd  340 (340)
T 1got_B          274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW--DSFLKIWN  340 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEET--TSCEEEEC
T ss_pred             EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcC--CccEEecC
Confidence            44445689999999999999999999999999999999999999999999999999995  58999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.8e-51  Score=337.94  Aligned_cols=294  Identities=20%  Similarity=0.363  Sum_probs=258.8

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      .++.+++.+|.+.|++++|+|+|++|++++.|+.+++|++..        ...+..+..|...|.+++|+|++++|++|+
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s   74 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET--------QVEVRSIQVTETPVRAGKFIARKNWIIVGS   74 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--------TEEEEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--------CceeEEeeccCCcEEEEEEeCCCCEEEEEC
Confidence            356778899999999999999999999999999999998753        234567788999999999999999999999


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEcc-CCC
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNR-DGT  170 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~  170 (321)
                      .|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||++++ .....+..|...|.+++|+| ++.
T Consensus        75 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  154 (304)
T 2ynn_A           75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS  154 (304)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence            9999999999999999999999999999999999999999999999999999877 55667889999999999999 578


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc--CCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEE
Q 020798          171 MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP--NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI  248 (321)
Q Consensus       171 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  248 (321)
                      .|++++.|++|++||++.......+...+...+..+.++|  ++++|++++.|+.|++||+++++.+..+.+|...+..+
T Consensus       155 ~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~  234 (304)
T 2ynn_A          155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA  234 (304)
T ss_dssp             EEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEE
Confidence            9999999999999999877666666555666788888886  77899999999999999999999999999998765443


Q ss_pred             EeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCc--eEEEEeecCCccEEEccccc
Q 020798          249 SSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN--IIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~~~d~~~~i~iw~~~~  320 (321)
                         ...+++.+|++|+.||.|++||+.+++++..+..|...+.+++|+|++.  ++|+|+.   ..+.+|+..+
T Consensus       235 ---~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~---~g~~~~~~~~  302 (304)
T 2ynn_A          235 ---VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD---NGFTVLSLGN  302 (304)
T ss_dssp             ---EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEET---TEEEEEECC-
T ss_pred             ---EECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecC---CceEEEEecc
Confidence               3457899999999999999999999999999999999999999999875  5777762   3466777654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=8.2e-50  Score=335.96  Aligned_cols=292  Identities=22%  Similarity=0.410  Sum_probs=255.2

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      ...+.+++|...|++++|+|++++|++|+.|+.+++|+...        ......+..|...|.+++|+|++++|++|+.
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~--------~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~  126 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT--------TNKEHAVTMPCTWVMACAYAPSGCAIACGGL  126 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------CCEEEEEECSSSCCCEEEECTTSSEEEEEST
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC--------CCcceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence            45678899999999999999999999999999999998643        2234556678889999999999999999999


Q ss_pred             CCcEEEEecCCc------ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEcc
Q 020798           94 DKTIRLWDVPTA------TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR  167 (321)
Q Consensus        94 d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~  167 (321)
                      |+.+++|++...      .....+.+|...+.+++|+|++..|++++.|++|++||+++++.+..+..|...|.+++|+|
T Consensus       127 d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          127 DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP  206 (354)
T ss_dssp             TSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred             CCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence            999999998643      23456678999999999999999999999999999999999999999999999999999988


Q ss_pred             --CCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCce
Q 020798          168 --DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK  245 (321)
Q Consensus       168 --~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  245 (321)
                        +++.|++++.|+.|++||++++++...+ ..+...+..++|+|++++|++++.|+.|++||++.++.+..+..+.. .
T Consensus       207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~-~  284 (354)
T 2pbi_B          207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAF-ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI-I  284 (354)
T ss_dssp             CSSCCEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC-C
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCc-c
Confidence              4679999999999999999998877665 45667899999999999999999999999999999887777754332 1


Q ss_pred             eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          246 YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ..+......+++.+|++|+.|+.|++||+.+++.+..+.+|.++|.+++|+|++++|++|+.  |+.|+||+
T Consensus       285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~--D~~v~vW~  354 (354)
T 2pbi_B          285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW--DHTLRVWA  354 (354)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET--TSEEEEEC
T ss_pred             cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC--CCCEEecC
Confidence            22333444578999999999999999999999999999999999999999999999999994  58999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-49  Score=335.34  Aligned_cols=292  Identities=21%  Similarity=0.290  Sum_probs=235.9

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecC------CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSA------DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~------d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      ...|.+.|++++|||||++||+|+.      |+.+++|+.....    ..........+|...|.+++|+|+++ +++++
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~----~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s  112 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA----PNESLCTAGVQTEAGVTDVAWVSEKG-ILVAS  112 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-------CGGGCSEEEECSSCEEEEEEETTTE-EEEEE
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC----cceeEecccCCCCCCEEEEEEcCCCC-EEEEE
Confidence            3579999999999999999999997      6778888654321    11122234457889999999999986 55678


Q ss_pred             CCCcEEEEecCCcceee----eeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC
Q 020798           93 DDKTIRLWDVPTATCLK----TLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      .||+|++||+.+++...    ...+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|+
T Consensus       113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~  192 (357)
T 4g56_B          113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG  192 (357)
T ss_dssp             TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence            89999999998876432    34579999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-EEEEEeCCCeEEEEeCCCCceeeeec-cCCCCCeEEEEEccC-CCEEEEEecCCeEEEEeCCCCcEEEEEeccCCce
Q 020798          169 GT-MIVTSSYDGLCRIWDASTGHCMKTLI-DDENPPVSFVKFSPN-GKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK  245 (321)
Q Consensus       169 ~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~-g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  245 (321)
                      +. .+++++.|+.|++||+++++....+. ..+...+..++|+|+ +.+|++++.|+.|++||+++++.+..+.+|...+
T Consensus       193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v  272 (357)
T 4g56_B          193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNI  272 (357)
T ss_dssp             CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCE
T ss_pred             CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeE
Confidence            75 78899999999999999887655442 234556889999997 5688899999999999999999999998888776


Q ss_pred             eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecC-CCceEEEEeecCCccEEEccccc
Q 020798          246 YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP-TENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .++.  |.+.++++|++|+.||+|+|||+++++++..+ +|.++|++++|+| ++.+||+||.  |+.|++|++..
T Consensus       273 ~~l~--~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~--Dg~v~iW~~~~  343 (357)
T 4g56_B          273 TGLA--YSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGW--DHKVLHHHLPS  343 (357)
T ss_dssp             EEEE--ECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEET--TSCEEEEECC-
T ss_pred             EEEE--EcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcC--CCeEEEEECCC
Confidence            5543  33333478999999999999999998877654 7999999999999 7899999995  58999999854

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.9e-48  Score=323.22  Aligned_cols=295  Identities=27%  Similarity=0.476  Sum_probs=252.5

Q ss_pred             ceeeeeccCCcccEEEEEECCCC-CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDG-RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      ..+...|.+|.+.|++++|+|++ ++|++|+.|+.+++|++.....   ....++..+.+|...|.+++|+|++++|++|
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ---KFGVPVRSFKGHSHIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT---EEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc---cccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence            45678899999999999999965 8999999999999999864321   1123456788999999999999999999999


Q ss_pred             eCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC---
Q 020798           92 SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD---  168 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~---  168 (321)
                      +.|++|++||+.+++....+.+|...|.+++|+|++.+|++++.|+.|++||++ ++++..+..|...+.+++|.|.   
T Consensus        84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred             eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence            999999999999999999999999999999999999999999999999999997 4566778889999999999985   


Q ss_pred             ---CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCce
Q 020798          169 ---GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK  245 (321)
Q Consensus       169 ---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  245 (321)
                         +..+++++.|+.|++||+++.+....+ ..+...+..++|+|+|++|++++.|+.|++||+.+++.+..+..+. ..
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~v  240 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEADF-IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EV  240 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS-CE
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhheee-cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-cE
Confidence               448999999999999999987766554 3567789999999999999999999999999999999888887543 33


Q ss_pred             eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC--------CCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          246 YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG--------HTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                         ....+.+++.+|++++.+ .+++|++..+..+..+..        |...+.+++|+|+|++|++|+  .|+.|+||+
T Consensus       241 ---~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~--~Dg~i~vWd  314 (319)
T 3frx_A          241 ---FSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY--TDNVIRVWQ  314 (319)
T ss_dssp             ---EEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE--TTSCEEEEE
T ss_pred             ---EEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee--cCceEEEEE
Confidence               333445789988887755 599999988777665542        456799999999999999998  458999999


Q ss_pred             cc
Q 020798          318 QE  319 (321)
Q Consensus       318 ~~  319 (321)
                      +.
T Consensus       315 ~~  316 (319)
T 3frx_A          315 VM  316 (319)
T ss_dssp             EE
T ss_pred             Ee
Confidence            85

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.9e-49  Score=329.76  Aligned_cols=299  Identities=23%  Similarity=0.397  Sum_probs=244.4

Q ss_pred             cceeeeeccCCcc-cEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE
Q 020798           12 PYTLTQTLNGHLR-AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        12 ~~~~~~~~~~h~~-~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~   90 (321)
                      ...+.+.+.+|.. .|.+++|+|+|++||+|+.|+.|++|++.....     ........+|...|.+++|+|++++|++
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-----~~~~~~~~~h~~~v~~~~~sp~g~~l~s   78 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-----ICKSVLSEGHQRTVRKVAWSPCGNYLAS   78 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-----EEEEEECSSCSSCEEEEEECTTSSEEEE
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-----eeeeeeccccCCcEEEEEECCCCCEEEE
Confidence            4567788999988 999999999999999999999999998753210     0011223689999999999999999999


Q ss_pred             EeCCCcEEEEecCCc--ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC---EEEEEEeCCCCCeeEEEE
Q 020798           91 ASDDKTIRLWDVPTA--TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG---KCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~  165 (321)
                      |+.|+.+++|++...  ++...+.+|...|.+++|+|++++|++++.|+.|++||++++   +++..+..|...|.+++|
T Consensus        79 ~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             EETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             EECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence            999999999998766  456778899999999999999999999999999999999765   345667889999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCcee-eeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC------------
Q 020798          166 NRDGTMIVTSSYDGLCRIWDASTGHCM-KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG------------  232 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~------------  232 (321)
                      +|++.+|++++.|+.|++||.+.+... ......+...|..++|+|+|++|++++.|+.|++||....            
T Consensus       159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~  238 (345)
T 3fm0_A          159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD  238 (345)
T ss_dssp             CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred             CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence            999999999999999999998876532 2233456778999999999999999999999999996321            


Q ss_pred             ---cEEEEEec-cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce---------EEEEecCCCCCeEEEEecCCC
Q 020798          233 ---KILKTYTG-HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK---------VVQKLEGHTDPVISVASHPTE  299 (321)
Q Consensus       233 ---~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~p~~  299 (321)
                         +.+..+.+ |...++.+   ...+++..|++++.|+.|++|+.....         ......+|...|++++|+|++
T Consensus       239 ~~~~~~~~~~~~h~~~v~~v---~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~  315 (345)
T 3fm0_A          239 PSWKCICTLSGFHSRTIYDI---AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE  315 (345)
T ss_dssp             CEEEEEEEECSSCSSCEEEE---EECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred             CccceeEEecCCCCCcEEEE---EEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence               22334443 44444333   334778899999999999999986542         123346899999999999998


Q ss_pred             -ceEEEEeecCCccEEEccccc
Q 020798          300 -NIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       300 -~~l~s~~~d~~~~i~iw~~~~  320 (321)
                       .+||+||.  ||.|++|+.+.
T Consensus       316 ~~~laS~s~--Dg~v~~W~~~~  335 (345)
T 3fm0_A          316 PGLLASCSD--DGEVAFWKYQR  335 (345)
T ss_dssp             TTEEEEEET--TSCEEEEEECC
T ss_pred             ceEEEEcCC--CCcEEEEEecC
Confidence             58999984  58999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.2e-50  Score=340.02  Aligned_cols=296  Identities=21%  Similarity=0.440  Sum_probs=251.8

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      ...+.|.+|.+.|++++|+|++++|++|+.|+.|++|+...        ......+..|...|.+++|+|++++|++|+.
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~--------~~~~~~~~~h~~~v~~~~~s~~g~~las~~~  128 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT--------SQKTHAIKLHCPWVMECAFAPNGQSVACGGL  128 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT--------TEEEEEEECCCTTCCCCEECTTSSEEEECCS
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------CccceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence            35678999999999999999999999999999999998743        2345677889999999999999999999999


Q ss_pred             CCcEEEEecCCcc-------eeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEEE-----eCCCCCe
Q 020798           94 DKTIRLWDVPTAT-------CLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVL-----PAHSDPV  160 (321)
Q Consensus        94 d~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~-----~~~~~~v  160 (321)
                      |+.+++||+.+..       ....+.+|...+.++.|.|++ ..|++|+.|++|++||+++++.+..+     ..|...+
T Consensus       129 d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v  208 (380)
T 3iz6_a          129 DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV  208 (380)
T ss_dssp             SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred             CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence            9999999986532       234567899999999999974 57999999999999999999887766     5688899


Q ss_pred             eEEEEcc-CCCEEEEEeCCCeEEEEeCCCC-ceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          161 TAVDFNR-DGTMIVTSSYDGLCRIWDASTG-HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       161 ~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      .+++|++ +++++++++.|++|++||++.. ..... ...+...|..++|+|++++|++++.|+.|++||+++++.+..+
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~  287 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT-YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY  287 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE-ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE-ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence            9999987 7889999999999999999844 43433 4456778999999999999999999999999999999988887


Q ss_pred             eccCCc----eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEe----cCCCCCeEEEEecCCCceEEEEeecCC
Q 020798          239 TGHTNS----KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL----EGHTDPVISVASHPTENIIASGALDND  310 (321)
Q Consensus       239 ~~~~~~----~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~s~~~d~~  310 (321)
                      ..+...    ...+....+.++|++|++|+.||.|++||+..++.+..+    .+|.++|.+++|+|++.+|++||.  |
T Consensus       288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--D  365 (380)
T 3iz6_a          288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW--D  365 (380)
T ss_dssp             CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT--T
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC--C
Confidence            654321    111223344578999999999999999999988887766    679999999999999999999995  5


Q ss_pred             ccEEEccccc
Q 020798          311 RTVKIWTQEK  320 (321)
Q Consensus       311 ~~i~iw~~~~  320 (321)
                      +.|+||+++.
T Consensus       366 ~~i~iW~~~~  375 (380)
T 3iz6_a          366 KNLKIWAFSG  375 (380)
T ss_dssp             SCEEEEECCS
T ss_pred             CCEEEEecCC
Confidence            8999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3e-48  Score=324.54  Aligned_cols=293  Identities=18%  Similarity=0.251  Sum_probs=236.5

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCCceEEEeeccccC--CCC-CCCCCcccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSIS--NSD-STPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~--~~~-~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      ..|.+.|.+++|+|||++|++++ |+++++|+.....  ... ............|..+|.+++|+|++ .|++|+.||.
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~  104 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA  104 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence            45778899999999999999887 6677777532110  000 01111112223467789999999985 6789999999


Q ss_pred             EEEEecCCcceeee----eecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC-E
Q 020798           97 IRLWDVPTATCLKT----LIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT-M  171 (321)
Q Consensus        97 i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  171 (321)
                      |++||+.+++....    ..+|...|.+++|+|++++|++|+.|++|++||+++++++..+..|...|.+++|+|++. +
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence            99999998865433    458999999999999999999999999999999999999999999999999999999875 7


Q ss_pred             EEEEeCCCeEEEEeCCCCceeeeecc-CCCCCeEEEEEccC-CCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEE
Q 020798          172 IVTSSYDGLCRIWDASTGHCMKTLID-DENPPVSFVKFSPN-GKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCIS  249 (321)
Q Consensus       172 l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~-g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  249 (321)
                      |++++.|++|++||+++++....+.. .+...+..++|+|+ ++++++|+.|+.|++||+++++.+..+.+|...+.++.
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~  264 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV  264 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEE
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            89999999999999999887766532 33456888999985 67888999999999999999999999999988765543


Q ss_pred             eEEEecCC-eEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCc-eEEEEeecCCccEEEccccc
Q 020798          250 STFSVTNG-KYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN-IIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       250 ~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~d~~~~i~iw~~~~  320 (321)
                        | .+++ .+|++|+.|++|+|||+.+++++ .+.+|.+.|++++|+|++. +|++||.  |++|++|++..
T Consensus       265 --f-sp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~--D~~v~~w~v~~  331 (344)
T 4gqb_B          265 --F-SPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGW--DHQVVHHVVPT  331 (344)
T ss_dssp             --E-CSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEET--TSCEEEEECCC
T ss_pred             --E-ccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcC--CCeEEEEECCC
Confidence              3 3565 68999999999999999988765 5789999999999999986 5678884  58999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.4e-47  Score=323.92  Aligned_cols=293  Identities=33%  Similarity=0.603  Sum_probs=241.3

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCC------C--CCCc--ccccccccccEEEEEECCCCCEEEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDS------T--PPSP--LQKFTGHEQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~------~--~~~~--~~~~~~h~~~i~~~~~~~~~~~l~~   90 (321)
                      +|...|.+++|+|+|++||+|+ ++.+++|++........      .  ....  ......+...|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999987 78999998754221000      0  0000  0001123345999999999999999


Q ss_pred             EeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEcc-CC
Q 020798           91 ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR-DG  169 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~  169 (321)
                      |+.|+.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||++++++...+. +...+.+++|+| ++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG  219 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence            9999999999999999888899999999999999999999999999999999999998877765 556799999999 88


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeec------cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC-----------
Q 020798          170 TMIVTSSYDGLCRIWDASTGHCMKTLI------DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG-----------  232 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~-----------  232 (321)
                      .++++++.|+.|++||+++++....+.      ..+...+..++|+|+|++|++++.|+.|++||+++.           
T Consensus       220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~  299 (393)
T 1erj_A          220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS  299 (393)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence            999999999999999999887665542      345667999999999999999999999999998753           


Q ss_pred             -cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecC------CCceEEEE
Q 020798          233 -KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP------TENIIASG  305 (321)
Q Consensus       233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p------~~~~l~s~  305 (321)
                       .....+.+|...+.++   ...+++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|      ++++||+|
T Consensus       300 ~~~~~~~~~h~~~v~~~---~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg  376 (393)
T 1erj_A          300 GTCEVTYIGHKDFVLSV---ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG  376 (393)
T ss_dssp             -CEEEEEECCSSCEEEE---EECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             CcceEEEecccCcEEEE---EECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence             2345566676654433   3457899999999999999999999999999999999999999876      68899999


Q ss_pred             eecCCccEEEccccc
Q 020798          306 ALDNDRTVKIWTQEK  320 (321)
Q Consensus       306 ~~d~~~~i~iw~~~~  320 (321)
                      +  .|+.|+||+.++
T Consensus       377 s--~Dg~i~iW~~~~  389 (393)
T 1erj_A          377 S--GDCKARIWKYKK  389 (393)
T ss_dssp             E--TTSEEEEEEEEE
T ss_pred             C--CCCcEEECcccc
Confidence            9  458999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-47  Score=318.35  Aligned_cols=294  Identities=23%  Similarity=0.376  Sum_probs=231.1

Q ss_pred             cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccc-cc-ccccEEEEEECCCCCEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF-TG-HEQGVSDLVFSSDSRFLV   89 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~i~~~~~~~~~~~l~   89 (321)
                      ..++.+.+++|.+.|.+++|+|+  +|++|+.|+.|++|++....      ......+ .+ |...|.+++|+|++++|+
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~------~~~~~~~~~~~h~~~v~~v~~sp~~~~la   74 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD------FTLIDVLDETAHKKAIRSVAWRPHTSLLA   74 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC------CEEEEEECTTCCCSCEEEEEECTTSSEEE
T ss_pred             ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC------eEEEEEEecCCccCCEEEEEECCCCCEEE
Confidence            45667889999999999999988  99999999999999875311      1122333 33 999999999999999999


Q ss_pred             EEeCCCcEEEEecCC-------cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC----CEEEEEEeCCCC
Q 020798           90 SASDDKTIRLWDVPT-------ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT----GKCLKVLPAHSD  158 (321)
Q Consensus        90 ~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~----~~~~~~~~~~~~  158 (321)
                      +|+.|+.|++||+..       .+....+.+|...|.+++|+|++++|++|+.|+.|++||++.    .+++..+..|..
T Consensus        75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~  154 (330)
T 2hes_X           75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ  154 (330)
T ss_dssp             EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred             EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence            999999999999853       345567789999999999999999999999999999999943    256677889999


Q ss_pred             CeeEEEEccCCCEEEEEeCCCeEEEEeCCCC--ceeeeeccCCCCCeEEEEEccC--CCEEEEEecCCeEEEEeCCCC--
Q 020798          159 PVTAVDFNRDGTMIVTSSYDGLCRIWDASTG--HCMKTLIDDENPPVSFVKFSPN--GKFILVGTLDNTLRLWNYSTG--  232 (321)
Q Consensus       159 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~--g~~l~~~~~d~~i~i~d~~~~--  232 (321)
                      .|.+++|+|++.+|++++.|++|++||...+  +++.. +..+...|..++|+|+  +.+|++++.|+.|++||+..+  
T Consensus       155 ~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~  233 (330)
T 2hes_X          155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV-LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE  233 (330)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE-ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE-ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence            9999999999999999999999999998765  33433 3456778999999998  778999999999999998654  


Q ss_pred             ------cEEEEEec-cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce--EEE-EecCCCC-CeEEEEecC--CC
Q 020798          233 ------KILKTYTG-HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK--VVQ-KLEGHTD-PVISVASHP--TE  299 (321)
Q Consensus       233 ------~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~-~~~~h~~-~v~~~~~~p--~~  299 (321)
                            .....+.. |...+.++.  +. + +.+|++++.||.|++||..+++  .+. ...+|.. .|.+++|+|  ++
T Consensus       234 ~~~~~~~~~~~~~~~h~~~v~~v~--~s-~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~  309 (330)
T 2hes_X          234 DDQQEWVCEAILPDVHKRQVYNVA--WG-F-NGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGK  309 (330)
T ss_dssp             TSCEEEEEEEECCSCCSSCEEEEE--EC-T-TSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----
T ss_pred             cccceeEEeeecccccccceEEEE--Ec-C-CCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCc
Confidence                  23334443 555554443  32 3 4489999999999999998763  333 3467877 899999999  68


Q ss_pred             ceEEEEeecCCccEEEccccc
Q 020798          300 NIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       300 ~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ++||+|+.  |+.|+||+.++
T Consensus       310 ~~las~s~--Dg~v~~W~~~~  328 (330)
T 2hes_X          310 TILATGGD--DGIVNFWSLEK  328 (330)
T ss_dssp             CCEEEEET--TSEEEEEEC--
T ss_pred             eEEEEecC--CCcEEEEEecc
Confidence            99999994  58999999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.3e-47  Score=318.28  Aligned_cols=298  Identities=25%  Similarity=0.423  Sum_probs=239.7

Q ss_pred             ceeeeeccCCcccEEEEEE-----CC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCC
Q 020798           13 YTLTQTLNGHLRAISSVKF-----SH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR   86 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~-----s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~   86 (321)
                      ..+...|++|.+.|++++|     +| ++++|++|+.|+.|++|++...... .....+...+.+|...|.+++|+|+++
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~-~~~~~~~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN-GYFGIPHKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS-SBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc-cccccccchhccCCCceEEEEECCCCC
Confidence            4566789999999999999     76 9999999999999999998643211 011234556789999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE--eCCCCCeeEEE
Q 020798           87 FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL--PAHSDPVTAVD  164 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~  164 (321)
                      ++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.........  ..|...+.+++
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee
Confidence            9999999999999999999999999999999999999999999999999999999999854332221  26788999999


Q ss_pred             EccCC----------CEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCC-Cc
Q 020798          165 FNRDG----------TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST-GK  233 (321)
Q Consensus       165 ~~~~~----------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~-~~  233 (321)
                      |+|++          .++++++.|+.|++||.. .+.... ...+...+..++|+|+|++|++++.|+.|++||+.. ..
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~-~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~  247 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYT-FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY  247 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEE-EECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEE-EcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence            99986          689999999999999954 333333 345667899999999999999999999999999943 33


Q ss_pred             EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEE--Eec-----------CCCCCeEEEEecCCCc
Q 020798          234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ--KLE-----------GHTDPVISVASHPTEN  300 (321)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~-----------~h~~~v~~~~~~p~~~  300 (321)
                      ....+. +...+   ....+.+++.+++++ .|+.|++||+.+++...  .+.           +|...|.+++|+|+++
T Consensus       248 ~~~~~~-~~~~v---~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~  322 (343)
T 2xzm_R          248 PQREFD-AGSTI---NQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK  322 (343)
T ss_dssp             CSEEEE-CSSCE---EEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred             cceeec-CCCcE---EEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence            444442 22233   333345778877654 68889999998765432  333           6888999999999999


Q ss_pred             eEEEEeecCCccEEEccccc
Q 020798          301 IIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       301 ~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +|++|+  .||.|++|+.+.
T Consensus       323 ~l~sg~--~Dg~v~~w~~~~  340 (343)
T 2xzm_R          323 KLFAGF--TDGVIRTFSFET  340 (343)
T ss_dssp             CEEEEE--TTSEEEEEEEEE
T ss_pred             eEEEec--CCceEEEEEEEc
Confidence            999998  458999999863

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.8e-47  Score=341.74  Aligned_cols=295  Identities=21%  Similarity=0.294  Sum_probs=252.8

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      ....+.+.+|...|++++|+|+|++||+|+.|+.|++||+....      ......+.+|.+.|.+++|+|++++|++++
T Consensus        49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~------~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~  122 (611)
T 1nr0_A           49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT------HILKTTIPVFSGPVKDISWDSESKRIAAVG  122 (611)
T ss_dssp             SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT------CCEEEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred             cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc------ceeeEeecccCCceEEEEECCCCCEEEEEE
Confidence            34566788999999999999999999999999999999975321      123346778999999999999999999888


Q ss_pred             CC----CcEEEEecCCcceeeeeecCcccEEEEEECCCCC-EEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEcc
Q 020798           93 DD----KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR  167 (321)
Q Consensus        93 ~d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~  167 (321)
                      .+    +.|++||  .++....+.+|...|.+++|+|++. .|++++.|++|++||..++++...+..|...|.+++|+|
T Consensus       123 ~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp  200 (611)
T 1nr0_A          123 EGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP  200 (611)
T ss_dssp             CCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT
T ss_pred             CCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC
Confidence            65    3677777  4555667889999999999999986 599999999999999999998889999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeecc------CCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc
Q 020798          168 DGTMIVTSSYDGLCRIWDASTGHCMKTLID------DENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH  241 (321)
Q Consensus       168 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  241 (321)
                      ++++|++++.|++|++||+.+++....+..      .+...|..++|+|+|++|++++.|++|++||+.+++.+..+..+
T Consensus       201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~  280 (611)
T 1nr0_A          201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG  280 (611)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence            999999999999999999998877665532      56678999999999999999999999999999999988887643


Q ss_pred             CCc-eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          242 TNS-KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       242 ~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ... .......+   ++..+++++.||.+++||...++....+.+|..+|++++|+|++++|++|+.  |++|++||.+.
T Consensus       281 ~~~~~~~~~~~~---~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~--D~~v~~Wd~~~  355 (611)
T 1nr0_A          281 TRIEDQQLGIIW---TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA--EGHINSWDIST  355 (611)
T ss_dssp             SSGGGCEEEEEE---CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTT
T ss_pred             CCccceeEEEEE---cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCC
Confidence            221 11222222   5788999999999999999998888889999999999999999999999984  58999999753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.2e-47  Score=340.37  Aligned_cols=299  Identities=25%  Similarity=0.375  Sum_probs=245.6

Q ss_pred             ccCCcceeeeeccCCcccEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCC
Q 020798            8 ESFRPYTLTQTLNGHLRAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR   86 (321)
Q Consensus         8 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~   86 (321)
                      ..++..+....+.+|.+.|++++|+|++. +|++|+.|+.+++|+...        ...+..+.+|...|.+++|+|+++
T Consensus       132 ~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~--------~~~~~~l~~H~~~V~~v~fspdg~  203 (611)
T 1nr0_A          132 FLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--------FKFKSTFGEHTKFVHSVRYNPDGS  203 (611)
T ss_dssp             EETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--------BEEEEEECCCSSCEEEEEECTTSS
T ss_pred             EEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC--------CeEeeeeccccCceEEEEECCCCC
Confidence            33444445567889999999999999997 599999999999998542        234567789999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCcceeeeee-------cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE-------
Q 020798           87 FLVSASDDKTIRLWDVPTATCLKTLI-------GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV-------  152 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------  152 (321)
                      +|++++.|+.|++||+.+++....+.       +|...|.+++|+|++++|++++.|++|++||++++++...       
T Consensus       204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~  283 (611)
T 1nr0_A          204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI  283 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred             EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence            99999999999999999988777663       7999999999999999999999999999999988765433       


Q ss_pred             ------------------------------------EeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec
Q 020798          153 ------------------------------------LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI  196 (321)
Q Consensus       153 ------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  196 (321)
                                                          +..|...|++++|+|+++.|++++.|++|++||+.+++......
T Consensus       284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~  363 (611)
T 1nr0_A          284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP  363 (611)
T ss_dssp             GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS
T ss_pred             cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecc
Confidence                                                34688899999999999999999999999999987654322110


Q ss_pred             c-------------------------------------------------------------------------------
Q 020798          197 D-------------------------------------------------------------------------------  197 (321)
Q Consensus       197 ~-------------------------------------------------------------------------------  197 (321)
                      .                                                                               
T Consensus       364 ~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~  443 (611)
T 1nr0_A          364 DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT  443 (611)
T ss_dssp             CSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE
T ss_pred             cCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCcee
Confidence            0                                                                               


Q ss_pred             --CCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcE--EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEE
Q 020798          198 --DENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKI--LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       198 --~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd  273 (321)
                        .+...+.+++|+|+|++|++++.|+.|++||+.++..  +.. .+|...+.+   ..+.|++++|++++.|+.|++||
T Consensus       444 ~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~---v~fspdg~~las~s~d~~v~~w~  519 (611)
T 1nr0_A          444 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITS---VAFSNNGAFLVATDQSRKVIPYS  519 (611)
T ss_dssp             EEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEE---EEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEE---EEECCCCCEEEEEcCCCCEEEEE
Confidence              0112356789999999999999999999999987653  233 456655444   34458999999999999999999


Q ss_pred             ccc-ceEEEE--ecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          274 LQS-RKVVQK--LEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       274 ~~~-~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +.+ ++++..  +.+|...|++++|+|++++||+|+.  |++|+||+++.
T Consensus       520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~--D~~v~lW~~~~  567 (611)
T 1nr0_A          520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL--DNSVIVWNMNK  567 (611)
T ss_dssp             GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTC
T ss_pred             cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC--CCcEEEEECCC
Confidence            987 555443  3459999999999999999999995  58999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.1e-45  Score=307.27  Aligned_cols=296  Identities=28%  Similarity=0.466  Sum_probs=249.4

Q ss_pred             eeeeeccCCcccEEEEEECCC-CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           14 TLTQTLNGHLRAISSVKFSHD-GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~-g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      ++..+|+||.+.|++++|+|+ +++|+||+.|+.|++|++.....   ....+...+.+|...|.+++|+|++++|++++
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~---~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET---NYGIPQRALRGHSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS---CSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc---ccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence            466789999999999999997 68999999999999999865321   12234567789999999999999999999999


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEE-EEEeCCCCCeeEEEEccCC--
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCL-KVLPAHSDPVTAVDFNRDG--  169 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~~--  169 (321)
                      .|+.|++|+............+...+....++++++.|++++.|+.+++||+...... .....|...+..++|++++  
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred             ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence            9999999999998887777888888999999999999999999999999998766543 3456788899999998865  


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEE
Q 020798          170 TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCIS  249 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  249 (321)
                      ..+++++.|+.|++||+++++....+. .+...|.+++|+|++++|++++.|+.|++||+++.+.+..+..+. .   +.
T Consensus       186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~---v~  260 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-I---IN  260 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS-C---EE
T ss_pred             cEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc-e---EE
Confidence            478899999999999999988766653 466789999999999999999999999999999999988887653 2   33


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEe---------cCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL---------EGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---------~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .....+++. +++++.|+.|++||++++..+..+         .+|...|++++|+|++++|++|+.  ||.|+||+++.
T Consensus       261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--Dg~v~iW~~~t  337 (340)
T 4aow_A          261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT--DNLVRVWQVTI  337 (340)
T ss_dssp             EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET--TSCEEEEEEEC
T ss_pred             eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC--CCEEEEEeCCC
Confidence            333445555 556678999999999887766554         368889999999999999999984  58999999874

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.1e-46  Score=308.88  Aligned_cols=253  Identities=22%  Similarity=0.402  Sum_probs=224.5

Q ss_pred             cccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           65 PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        65 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      ....+.+|.+.|.+++|+|++++|++++.||.|++||+.++..+..+..|...+.+++|+|++++|++|+.|+.|++||+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            45678899999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc-CCCEEEEEecCCe
Q 020798          145 KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP-NGKFILVGTLDNT  223 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~~  223 (321)
                      ++++.+..+..|...|.+++|+|++.++++++.|++|++||++++.........+...+.+++|+| ++..|++++.|+.
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            999999999999999999999999999999999999999999887655555667778899999999 6789999999999


Q ss_pred             EEEEeCCCCcEEEEEec-cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceE
Q 020798          224 LRLWNYSTGKILKTYTG-HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENII  302 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  302 (321)
                      |++||++++.....+.. +......+... ..+++.+|++|+.|+.|++||+++++++..+.+|...|.+++|+|++.+|
T Consensus       165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  243 (304)
T 2ynn_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYY-PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII  243 (304)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCEEEEEEC-CSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEE
T ss_pred             EEEEECCCCCccceeccCCcCcEEEEEEE-EcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEE
Confidence            99999988766555543 33333333221 22478899999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCccEEEccccc
Q 020798          303 ASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       303 ~s~~~d~~~~i~iw~~~~  320 (321)
                      ++|+.  |+.|++||.+.
T Consensus       244 ~s~s~--Dg~i~iWd~~~  259 (304)
T 2ynn_A          244 ISGSE--DGTLKIWNSST  259 (304)
T ss_dssp             EEEET--TSCEEEEETTT
T ss_pred             EEEcC--CCeEEEEECCC
Confidence            99994  58999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.5e-45  Score=326.48  Aligned_cols=285  Identities=38%  Similarity=0.626  Sum_probs=251.8

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      .+..+.+.+|...|.+++|+|++++|++++.|+.+++|++..         ..+..+.+|...|.+++|+|++++|++++
T Consensus       293 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~---------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  363 (577)
T 2ymu_A          293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------QHLQTLTGHSSSVWGVAFSPDGQTIASAS  363 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---------CeeEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence            345667889999999999999999999999999999998642         23456778999999999999999999999


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      .|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|++++|+|+++.+
T Consensus       364 ~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l  441 (577)
T 2ymu_A          364 DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTI  441 (577)
T ss_dssp             TTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEE
Confidence            9999999995 55667888899999999999999999999999999999995 567778888999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEE
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF  252 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  252 (321)
                      ++++.|+.+++||.. ++.+..+ ..+...+..++|+|++++|++++.|+.|++||. +++.+..+.+|...+.++   .
T Consensus       442 ~~~~~d~~v~~w~~~-~~~~~~~-~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l---~  515 (577)
T 2ymu_A          442 ASASDDKTVKLWNRN-GQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV---A  515 (577)
T ss_dssp             EEEETTSEEEEEETT-SCEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEE---E
T ss_pred             EEEcCCCEEEEEECC-CCEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEE---E
Confidence            999999999999975 4444444 356678999999999999999999999999994 678889999988775554   3


Q ss_pred             EecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ..+++++|++++.||.|++||. +++.+..+.+|.++|++++|+||+++|++++.  |+.|++||
T Consensus       516 ~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~--D~~i~~Wd  577 (577)
T 2ymu_A          516 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASS--DKTVKLWN  577 (577)
T ss_dssp             ECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET--TSCEEEEC
T ss_pred             EcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC--CCEEEEeC
Confidence            3579999999999999999996 67888899999999999999999999999984  58999997

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-44  Score=304.82  Aligned_cols=293  Identities=22%  Similarity=0.363  Sum_probs=252.9

Q ss_pred             cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      .......+.+|.+.|++++|+|+|++|++++.|+.|++|++..        ...+..+.+|...|.+++|+|++++|+++
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~   92 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--------GERLGTLDGHTGTIWSIDVDCFTKYCVTG   92 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT--------CCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--------chhhhhhhhcCCcEEEEEEcCCCCEEEEE
Confidence            3445567899999999999999999999999999999998753        24566788899999999999999999999


Q ss_pred             eCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCC-----CcEEEEecCCCE-----------EEEEEeC
Q 020798           92 SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD-----ETVRIWDVKTGK-----------CLKVLPA  155 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~-----------~~~~~~~  155 (321)
                      +.|+.|++||+.+++....+. +...+.+++|+|+++.+++++.+     +.|++||+..+.           ....+..
T Consensus        93 ~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  171 (369)
T 3zwl_B           93 SADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT  171 (369)
T ss_dssp             ETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred             eCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence            999999999999998877776 88899999999999999999998     999999986542           2234445


Q ss_pred             CCC--CeeEEEEccCCCEEEEEeCCCeEEEEeCCC-CceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 020798          156 HSD--PVTAVDFNRDGTMIVTSSYDGLCRIWDAST-GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG  232 (321)
Q Consensus       156 ~~~--~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~  232 (321)
                      |..  .+.+++|+|+++.+++++.||.|++||+++ ......+ ..+...+..++|+|++++|++++.|+.|++||++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE-ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence            555  899999999999999999999999999998 4444443 455678999999999999999999999999999999


Q ss_pred             cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC--------------eEEEEEcccceEEEEecCCCCCeEEEEecCC
Q 020798          233 KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS--------------CVYLWELQSRKVVQKLEGHTDPVISVASHPT  298 (321)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  298 (321)
                      +.+..+.. ....   ......++++++++++.++              .+++||+.+++.+..+.+|..+|.+++|+|+
T Consensus       251 ~~~~~~~~-~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~  326 (369)
T 3zwl_B          251 QVLKKYET-DCPL---NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQ  326 (369)
T ss_dssp             CEEEEEEC-SSCE---EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             ceeeeecC-CCCc---eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCC
Confidence            98888873 3332   2334457899999999888              8999999999999999999999999999999


Q ss_pred             CceEEEEeecCCccEEEccccc
Q 020798          299 ENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       299 ~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +++|++|+.  |+.|++|+.++
T Consensus       327 ~~~l~s~~~--dg~v~iw~~~~  346 (369)
T 3zwl_B          327 GTSYASGGE--DGFIRLHHFEK  346 (369)
T ss_dssp             SSEEEEEET--TSEEEEEEECH
T ss_pred             CCEEEEEcC--CCeEEEEECcc
Confidence            999999984  58999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.8e-44  Score=329.18  Aligned_cols=296  Identities=26%  Similarity=0.461  Sum_probs=245.1

Q ss_pred             eeeeeccCCcccEEEEEECCCC-CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           14 TLTQTLNGHLRAISSVKFSHDG-RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      .+...+++|.+.|++++|+|++ ++|++|+.|+.|++|++.....   ........+.+|...|.+++|+|++++|++|+
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~---~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs  449 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK---AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS  449 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT---CSCEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc---ccccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence            3456789999999999999875 7999999999999999864221   11223456789999999999999999999999


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE---eCCCCCeeEEEEccCC
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL---PAHSDPVTAVDFNRDG  169 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~~~~~  169 (321)
                      .|+.|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||..........   ..|...|.+++|+|++
T Consensus       450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence            9999999999999988999999999999999999999999999999999998765433322   3578889999999986


Q ss_pred             --CEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeE
Q 020798          170 --TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYC  247 (321)
Q Consensus       170 --~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  247 (321)
                        ..+++++.|++|++||+++++....+ ..|...+.+++|+|+|++|++++.|+.|++||+++++.+..+..+. .   
T Consensus       530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~-~---  604 (694)
T 3dm0_A          530 LQPTIVSASWDKTVKVWNLSNCKLRSTL-AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-V---  604 (694)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSS-C---
T ss_pred             CcceEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC-c---
Confidence              57999999999999999988766554 4566789999999999999999999999999999998887765432 2   


Q ss_pred             EEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC-------------------CCeEEEEecCCCceEEEEeec
Q 020798          248 ISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT-------------------DPVISVASHPTENIIASGALD  308 (321)
Q Consensus       248 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~-------------------~~v~~~~~~p~~~~l~s~~~d  308 (321)
                      +......+++.++++++ ++.|++||+++++.+..+..+.                   ..+++++|+|++++|++|+  
T Consensus       605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs--  681 (694)
T 3dm0_A          605 IHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY--  681 (694)
T ss_dssp             EEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEE--
T ss_pred             EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEc--
Confidence            33333457787777665 5669999999988877665332                   1378999999999999998  


Q ss_pred             CCccEEEccccc
Q 020798          309 NDRTVKIWTQEK  320 (321)
Q Consensus       309 ~~~~i~iw~~~~  320 (321)
                      .||.|+||++.+
T Consensus       682 ~Dg~i~iW~i~~  693 (694)
T 3dm0_A          682 TDGVIRVWGIGR  693 (694)
T ss_dssp             TTSEEEEEEC--
T ss_pred             CCCeEEEEeccC
Confidence            458999999863

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.5e-45  Score=310.02  Aligned_cols=295  Identities=16%  Similarity=0.281  Sum_probs=242.0

Q ss_pred             CcceeeeeccCCcccEEEEEECCCC-CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC-CCCEE
Q 020798           11 RPYTLTQTLNGHLRAISSVKFSHDG-RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS-DSRFL   88 (321)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l   88 (321)
                      .+..+.+.+.+|...|++++|+|++ ++|++|+.|+.|++|++....      ........+|...|.+++|+| ++++|
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l  134 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN------KTSFIQGMGPGDAITGMKFNQFNTNQL  134 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT------CEEEECCCSTTCBEEEEEEETTEEEEE
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc------cceeeecCCcCCceeEEEeCCCCCCEE
Confidence            4667788899999999999999999 999999999999999986421      112223347999999999999 78999


Q ss_pred             EEEeCCCcEEEEecCCcceeeeeec---CcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEE
Q 020798           89 VSASDDKTIRLWDVPTATCLKTLIG---HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  165 (321)
                      ++++.|+.|++||+.+. ....+..   |...+.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++|
T Consensus       135 ~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~  212 (383)
T 3ei3_B          135 FVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEF  212 (383)
T ss_dssp             EEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEE
T ss_pred             EEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEE
Confidence            99999999999999864 3444443   4478999999999999999999999999999 46678888899999999999


Q ss_pred             ccCCC-EEEEEeCCCeEEEEeCCC----CceeeeeccCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEEEEe
Q 020798          166 NRDGT-MIVTSSYDGLCRIWDAST----GHCMKTLIDDENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       166 ~~~~~-~l~~~~~dg~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~~i~i~d~~~~~~~~~~~  239 (321)
                      +|+++ ++++++.|+.|++||+++    +......  .+...+..++|+| ++++|++++.|+.|++||+++++.+..+.
T Consensus       213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence            99998 999999999999999987    4444444  4667899999999 99999999999999999999887766665


Q ss_pred             ccCCc-------ee-------EEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC--CCCCeEEEEecCCCceEE
Q 020798          240 GHTNS-------KY-------CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG--HTDPVISVASHPTENIIA  303 (321)
Q Consensus       240 ~~~~~-------~~-------~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~  303 (321)
                      .|...       ..       .+......+++++  +|+.||.|++||+.+++.+..+.+  |...+..++|+|++++|+
T Consensus       291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~  368 (383)
T 3ei3_B          291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLA  368 (383)
T ss_dssp             ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEE
T ss_pred             cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEE
Confidence            44211       10       1111222345555  788999999999999999999887  456777889999999999


Q ss_pred             EEeecCCccEEEccccc
Q 020798          304 SGALDNDRTVKIWTQEK  320 (321)
Q Consensus       304 s~~~d~~~~i~iw~~~~  320 (321)
                      +|+   |+.|+||+++.
T Consensus       369 s~s---d~~i~iw~~~~  382 (383)
T 3ei3_B          369 SGM---GFNILIWNRED  382 (383)
T ss_dssp             EEE---TTEEEEEECC-
T ss_pred             Eec---CCcEEEEecCC
Confidence            996   48999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1e-44  Score=309.60  Aligned_cols=297  Identities=16%  Similarity=0.236  Sum_probs=253.7

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC----C---C
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD----S---R   86 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~----~---~   86 (321)
                      .+.+.+.+|.+.|++++|+|  ++|++|+.|+.|++|++.....  ..+...+..+.+|...|.+++|+|+    +   +
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~   82 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDN--ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC   82 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTT--CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccc--ccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence            45677899999999999999  8999999999999999875432  1122345677789999999999999    9   9


Q ss_pred             EEEEEeCCCcEEEEecCCcce-----eeeeecC-----cccEEEEEEC----CCCCE-EEEeeCCCcEEEEecCC-----
Q 020798           87 FLVSASDDKTIRLWDVPTATC-----LKTLIGH-----TNYVFCVNFN----PQSNM-IVSGAFDETVRIWDVKT-----  146 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~~wd~~~-----  146 (321)
                      +|++++.|+.|++||+.+++.     ...+..|     ...|.+++|+    |+++. |++++.||.|++||+++     
T Consensus        83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence            999999999999999988876     7778888     5899999999    99999 99999999999999987     


Q ss_pred             -CEEEE-----EE-------eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC--C---CCCeEEEEE
Q 020798          147 -GKCLK-----VL-------PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD--E---NPPVSFVKF  208 (321)
Q Consensus       147 -~~~~~-----~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~---~~~~~~~~~  208 (321)
                       ++.+.     .+       ..|...+.+++|+|++ .+++++.|+.|++||+++++....+...  +   ...+..++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence             55444     55       4478899999999999 9999999999999999988777665431  4   667999999


Q ss_pred             ccCCCEEEEEecC---CeEEEEeCCCCcEEEEEec-------------cCCceeEEEeEEEecCCeEEEEeCCCCeEEEE
Q 020798          209 SPNGKFILVGTLD---NTLRLWNYSTGKILKTYTG-------------HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLW  272 (321)
Q Consensus       209 ~~~g~~l~~~~~d---~~i~i~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw  272 (321)
                      +|++++|++++.|   +.|++||+++++.+..+..             |...+.++   ...+++++|++++.||.|++|
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~dg~i~iw  318 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL---SFNDSGETLCSAGWDGKLRFW  318 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE---EECSSSSEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEE---EECCCCCEEEEEeCCCeEEEE
Confidence            9999999999999   9999999999999999987             76655443   334789999999999999999


Q ss_pred             EcccceEEEEec------CC---------------CCCeEEEEecCCC----------ceEEEEeecCCccEEEccccc
Q 020798          273 ELQSRKVVQKLE------GH---------------TDPVISVASHPTE----------NIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       273 d~~~~~~~~~~~------~h---------------~~~v~~~~~~p~~----------~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      |+.+++.+..+.      +|               ..+|.+++|+|++          ++|++|+  .|+.|++|+++.
T Consensus       319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~  395 (397)
T 1sq9_A          319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC--LDRSIRWFREAG  395 (397)
T ss_dssp             ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE--TTTEEEEEEEEC
T ss_pred             EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec--CCCcEEEEEcCC
Confidence            999999999998      88               9999999999998          7999998  458999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.2e-43  Score=293.47  Aligned_cols=285  Identities=17%  Similarity=0.340  Sum_probs=245.9

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccc--cccccEEEEEECCCCCEEEEEeCCCc
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFT--GHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      ..+|...|++++|+|++++|++++ |+.+++|++.....     ...+..+.  +|...|.+++|+|++++|++++.|+.
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  120 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN-----KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC-----CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc-----eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence            347999999999999999999999 99999999864321     12223333  78899999999999999999999999


Q ss_pred             EEEEecCCcc--eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEE
Q 020798           97 IRLWDVPTAT--CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus        97 i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      |++||+.+++  ....+..|...+.+++|+|+++.+++++.|+.|++||+++++....+..|...+.+++|+|+++.+++
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  200 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence            9999998876  55667789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEe
Q 020798          175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV  254 (321)
Q Consensus       175 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (321)
                      ++.|+.+++||+++++......  ....+..++|+|+++++++++.++.|++||+.+++.. .+..|......   ....
T Consensus       201 ~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~---~~~~  274 (337)
T 1gxr_A          201 GGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLS---LKFA  274 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEE---EEEC
T ss_pred             EecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeE---EEEC
Confidence            9999999999999887766553  4567899999999999999999999999999988754 45566555433   3345


Q ss_pred             cCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          255 TNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      +++++|++++.||.|++||+.+++.+.. ..|..+|.+++|+|++++|++++  .|+.|++|++
T Consensus       275 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~  335 (337)
T 1gxr_A          275 YCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGS--GDKKATVYEV  335 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEE--TTSCEEEEEE
T ss_pred             CCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEec--CCCeEEEEEE
Confidence            7899999999999999999999887754 34788999999999999999998  4689999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-44  Score=307.35  Aligned_cols=250  Identities=29%  Similarity=0.539  Sum_probs=228.6

Q ss_pred             ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC
Q 020798           66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK  145 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  145 (321)
                      ...+.+|...|.+++|+|++++|++|+.|+.|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            45678999999999999999999999999999999999999889999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 020798          146 TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLR  225 (321)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~  225 (321)
                      +++++..+..|...|.+++|+|+++.+++++.|++|++||++++.++..+. .+...+..+.++|+++++++++.|+.|+
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence            999999999999999999999999999999999999999999988777654 4566799999999999999999999999


Q ss_pred             EEeCCCCcEEEEEeccCCceeEEEeEEEec-------------------CCeEEEEeCCCCeEEEEEcccceEEEEecCC
Q 020798          226 LWNYSTGKILKTYTGHTNSKYCISSTFSVT-------------------NGKYIVSGSEDSCVYLWELQSRKVVQKLEGH  286 (321)
Q Consensus       226 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h  286 (321)
                      +||+.+++....+.+|...+.++..  .+.                   ++.+|++|+.|+.|++||+++++.+..+.+|
T Consensus       260 vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h  337 (410)
T 1vyh_C          260 VWVVATKECKAELREHRHVVECISW--APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  337 (410)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEE--CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEECCCCceeeEecCCCceEEEEEE--cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence            9999999999999888877665543  221                   2678999999999999999999999999999


Q ss_pred             CCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          287 TDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       287 ~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ..+|++++|+|++++|++|+  .|+.|++||.+.
T Consensus       338 ~~~v~~v~~~~~g~~l~s~s--~D~~i~vwd~~~  369 (410)
T 1vyh_C          338 DNWVRGVLFHSGGKFILSCA--DDKTLRVWDYKN  369 (410)
T ss_dssp             SSCEEEEEECSSSSCEEEEE--TTTEEEEECCTT
T ss_pred             CCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCC
Confidence            99999999999999999998  458999999854

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-43  Score=292.21  Aligned_cols=289  Identities=27%  Similarity=0.419  Sum_probs=249.2

Q ss_pred             cCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEE
Q 020798            9 SFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL   88 (321)
Q Consensus         9 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l   88 (321)
                      .+.++++.+.+.+|.+.|++++| |++++|++++.||.|++|++..        ......+..|...|.+++|+|++++|
T Consensus         4 ~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l   74 (313)
T 3odt_A            4 PFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD--------QWLGTVVYTGQGFLNSVCYDSEKELL   74 (313)
T ss_dssp             -CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS--------SEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred             ccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC--------CEEEEEeecCCccEEEEEECCCCCEE
Confidence            45567788999999999999999 9999999999999999998753        23345667889999999999999999


Q ss_pred             EEEeCCCcEEEEecCCc---ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEE
Q 020798           89 VSASDDKTIRLWDVPTA---TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  165 (321)
                      ++++.|+.+++|++...   +....+.+|...+.++.+  +++.+++++.|+.|++||  .++....+..|..++.++.|
T Consensus        75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~  150 (313)
T 3odt_A           75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKV  150 (313)
T ss_dssp             EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEE
T ss_pred             EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEE
Confidence            99999999999998654   456677889999999999  578999999999999999  67778888899999999999


Q ss_pred             cc-CCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCc
Q 020798          166 NR-DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS  244 (321)
Q Consensus       166 ~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  244 (321)
                      .| +++.+++++.|+.+++||..  +....+...+...+..++|+|++. +++++.|+.|++||+++++.+..+..|...
T Consensus       151 ~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  227 (313)
T 3odt_A          151 VSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESF  227 (313)
T ss_dssp             EETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCce
Confidence            98 88999999999999999943  444555444677899999999998 889999999999999999999999888776


Q ss_pred             eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          245 KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ..++.   ..+++ .|++++.||.|++||+.+++.+..+..|..+|.+++|+|++++ ++++  .|+.|++|+.+.
T Consensus       228 i~~~~---~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~--~dg~i~iw~~~~  296 (313)
T 3odt_A          228 VYCIK---LLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDI-IVGS--SDNLVRIFSQEK  296 (313)
T ss_dssp             EEEEE---ECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCE-EEEE--TTSCEEEEESCG
T ss_pred             EEEEE---EecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCE-EEEe--CCCcEEEEeCCC
Confidence            55443   34667 5889999999999999999999999999999999999999984 4566  468999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.7e-43  Score=315.00  Aligned_cols=288  Identities=38%  Similarity=0.632  Sum_probs=252.0

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      .+....+.+|...|.+++|+|++++|++++.|+.+++|+...         ..+..+.+|...|.+++|+|++++|++++
T Consensus       252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~  322 (577)
T 2ymu_A          252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG---------QLLQTLTGHSSSVWGVAFSPDGQTIASAS  322 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---------cEEEEEecCCCCeEEEEECCCCCEEEEEe
Confidence            345677889999999999999999999999999999998532         34566788999999999999999999999


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      .|+.|++||..... +..+.+|...+.+++++|+++.|++++.|+.|++||. +++.+..+..|...|.+++|+|++++|
T Consensus       323 ~d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l  400 (577)
T 2ymu_A          323 DDKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI  400 (577)
T ss_dssp             TTSCEEEEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             CCCeEEEEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEE
Confidence            99999999986554 5677889999999999999999999999999999995 567788888999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEE
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF  252 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  252 (321)
                      ++++.|+.|++||.. ++....+ ..+...+..++|+|++++|++++.|+.|++||. +++.+..+.+|...+.++   .
T Consensus       401 ~~~~~d~~v~~~~~~-~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~---~  474 (577)
T 2ymu_A          401 ASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV---A  474 (577)
T ss_dssp             EEEETTSEEEEECTT-CCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEE---E
T ss_pred             EEEeCCCEEEEEeCC-CCEEEEe-cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEE---E
Confidence            999999999999964 4444444 356678999999999999999999999999996 567788888887765443   3


Q ss_pred             EecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ..+++++|++++.|+.|++||. +++.+..+.+|..+|++++|+|++++||+++  .|+.|+|||...
T Consensus       475 ~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~dg~v~lwd~~~  539 (577)
T 2ymu_A          475 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRNG  539 (577)
T ss_dssp             ECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSEEEEECTTS
T ss_pred             EcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE--CcCEEEEEeCCC
Confidence            4579999999999999999995 6788889999999999999999999999998  458999999753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.6e-44  Score=300.99  Aligned_cols=296  Identities=14%  Similarity=0.277  Sum_probs=240.4

Q ss_pred             CcceeeeeccCCcccEEEEEECCCCCEE-EEecC---CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC--
Q 020798           11 RPYTLTQTLNGHLRAISSVKFSHDGRLL-ASSSA---DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD--   84 (321)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--   84 (321)
                      +|..+.+.+++|...|++++|+|+++.+ ++++.   |+.+++|++....       .......+|...|.+++|+|+  
T Consensus         6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~   78 (357)
T 3i2n_A            6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD-------LKLLREIEKAKPIKCGTFGATSL   78 (357)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS-------EEEEEEEEESSCEEEEECTTCCT
T ss_pred             hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc-------ccceeeecccCcEEEEEEcCCCC
Confidence            3455666778999999999999999655 56665   9999999986421       111222378899999999998  


Q ss_pred             -CCEEEEEeCCCcEEEEecCCcc-eeeeeecCcccEEEEE------ECCCCCEEEEeeCCCcEEEEecCCCE-EEEEEeC
Q 020798           85 -SRFLVSASDDKTIRLWDVPTAT-CLKTLIGHTNYVFCVN------FNPQSNMIVSGAFDETVRIWDVKTGK-CLKVLPA  155 (321)
Q Consensus        85 -~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~  155 (321)
                       +++|++++.|+.|++||+.+++ ....+.+|...|.++.      |+|+++.|++++.|+.|++||+++++ ....+..
T Consensus        79 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  158 (357)
T 3i2n_A           79 QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP  158 (357)
T ss_dssp             TTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred             CCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc
Confidence             6999999999999999999887 7788889999999995      57889999999999999999999876 5666655


Q ss_pred             CCC----CeeEEE----EccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc---CCCEEEEEecCCeE
Q 020798          156 HSD----PVTAVD----FNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP---NGKFILVGTLDNTL  224 (321)
Q Consensus       156 ~~~----~v~~~~----~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~l~~~~~d~~i  224 (321)
                      |..    .+.+++    |+|+++.+++++.|+.|++||+++++....  ..+...+..++|+|   ++.++++++.|+.|
T Consensus       159 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  236 (357)
T 3i2n_A          159 VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVCSLEFDRKDISMNKLVATSLEGKF  236 (357)
T ss_dssp             CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred             cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence            544    788888    788999999999999999999998876443  23456799999999   99999999999999


Q ss_pred             EEEeCCCCcEEEEE-----eccCCceeEEEeEEEecCCe-EEEEeCCCCeEEEEEcccc-------------------eE
Q 020798          225 RLWNYSTGKILKTY-----TGHTNSKYCISSTFSVTNGK-YIVSGSEDSCVYLWELQSR-------------------KV  279 (321)
Q Consensus       225 ~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~-------------------~~  279 (321)
                      ++||+++++.+..+     ..|...+.++.   ..+++. +|++|+.||.|++||++.+                   +.
T Consensus       237 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~  313 (357)
T 3i2n_A          237 HVFDMRTQHPTKGFASVSEKAHKSTVWQVR---HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSL  313 (357)
T ss_dssp             EEEEEEEEETTTEEEEEEEECCSSCEEEEE---EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEE
T ss_pred             EEEeCcCCCcccceeeeccCCCcCCEEEEE---ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccce
Confidence            99999876544333     36666554433   346777 8999999999999999753                   45


Q ss_pred             EEEecCCCCCeEEEEecCCCceEE-EEeecCCccEEEccccc
Q 020798          280 VQKLEGHTDPVISVASHPTENIIA-SGALDNDRTVKIWTQEK  320 (321)
Q Consensus       280 ~~~~~~h~~~v~~~~~~p~~~~l~-s~~~d~~~~i~iw~~~~  320 (321)
                      +..+.+|..+|.+++|+|++++|+ +|+  .|+.|++|++++
T Consensus       314 ~~~~~~~~~~v~~~~~s~~~~~l~~s~~--~d~~i~iw~~~~  353 (357)
T 3i2n_A          314 LQNVTLSTQPISSLDWSPDKRGLCVCSS--FDQTVRVLIVTK  353 (357)
T ss_dssp             EEEEECCSSCEEEEEECSSSTTEEEEEE--TTSEEEEEEECC
T ss_pred             eeccccCCCCeeEEEEcCCCCeEEEEec--CCCcEEEEECCC
Confidence            777889999999999999999998 787  458999999865

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-44  Score=310.68  Aligned_cols=298  Identities=16%  Similarity=0.292  Sum_probs=240.1

Q ss_pred             eeeeec-cCCcccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           14 TLTQTL-NGHLRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        14 ~~~~~~-~~h~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      ++...+ ++|.+.|++++|+| ++++|++|+.|+.|++|++.......  .......+ .|...|.+++|+|++++|+++
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE--VYSSSLTY-DCSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--CCSCSEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--ccceeeec-cCCCCEEEEEEeCCCCEEEEE
Confidence            355566 89999999999999 99999999999999999987632211  11122222 589999999999999999999


Q ss_pred             eCCCcEEEEecC---Ccceeeeeec------------CcccEEEEE--ECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe
Q 020798           92 SDDKTIRLWDVP---TATCLKTLIG------------HTNYVFCVN--FNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP  154 (321)
Q Consensus        92 ~~d~~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  154 (321)
                      +.|+.|++||+.   .++......+            +...+.++.  +++++++|++++.|+.|++||+++++.+..+.
T Consensus       130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence            999999999995   4443332221            445566666  56789999999999999999999999998888


Q ss_pred             C--CCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEc----cCCCEEEEEecCCeEEEEe
Q 020798          155 A--HSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFS----PNGKFILVGTLDNTLRLWN  228 (321)
Q Consensus       155 ~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~l~~~~~d~~i~i~d  228 (321)
                      .  |...|++++|+|++..|++++.||.|++||+++++++..+...+...+..++++    |++.+|++++.|+.|++||
T Consensus       210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd  289 (437)
T 3gre_A          210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN  289 (437)
T ss_dssp             CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence            7  789999999999999999999999999999999888777654556678899665    4688999999999999999


Q ss_pred             CCCCcEEEEEeccCCcee-----------------------EEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC
Q 020798          229 YSTGKILKTYTGHTNSKY-----------------------CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG  285 (321)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  285 (321)
                      +++++.+..+.++.....                       .+...... ++.+|++|+.||.|++||+.+++.+..+.+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence            999998888876532111                       01112222 678999999999999999998876665554


Q ss_pred             -------------------------------------CCCCeEEEEecCC--CceEEEEeecCCccEEEcc
Q 020798          286 -------------------------------------HTDPVISVASHPT--ENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       286 -------------------------------------h~~~v~~~~~~p~--~~~l~s~~~d~~~~i~iw~  317 (321)
                                                           |.+.|++++|+++  +.+|++|+  .||.|+||+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~--~dG~I~iw~  437 (437)
T 3gre_A          369 PSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD--NSGLIGIFQ  437 (437)
T ss_dssp             C--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE--TTSCEEEEC
T ss_pred             ccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc--CCceEEEeC
Confidence                                                 8899999999998  78999987  569999995

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.8e-45  Score=314.50  Aligned_cols=300  Identities=20%  Similarity=0.249  Sum_probs=234.9

Q ss_pred             CCcceeeeeccCCcccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC-CCCE
Q 020798           10 FRPYTLTQTLNGHLRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS-DSRF   87 (321)
Q Consensus        10 ~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~   87 (321)
                      ...+.+.+...+|.+.|++++|+| ++++||+|+.||.|++|++....      ......+.+|.+.|.+|+|+| ++++
T Consensus       106 ~~~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------~~~~~~~~gH~~~V~~l~f~p~~~~~  179 (435)
T 4e54_B          106 LDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------KPTFIKGIGAGGSITGLKFNPLNTNQ  179 (435)
T ss_dssp             TTTTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS------CCEEECCCSSSCCCCEEEECSSCTTE
T ss_pred             ccceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC------ceeEEEccCCCCCEEEEEEeCCCCCE
Confidence            334555566678999999999999 56799999999999999875321      223445678999999999998 6889


Q ss_pred             EEEEeCCCcEEEEecCCcceeeeee--cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEE
Q 020798           88 LVSASDDKTIRLWDVPTATCLKTLI--GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus        88 l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  165 (321)
                      |++|+.|++|++||+++........  .+...+.+++|+|++++|++|+.||.|++||++. +.+..+..|...|.+++|
T Consensus       180 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~  258 (435)
T 4e54_B          180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVAL  258 (435)
T ss_dssp             EEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEE
T ss_pred             EEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeee
Confidence            9999999999999998765433222  2334577899999999999999999999999864 456677889999999999


Q ss_pred             ccCCC-EEEEEeCCCeEEEEeCCCCceeeee--ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccC
Q 020798          166 NRDGT-MIVTSSYDGLCRIWDASTGHCMKTL--IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT  242 (321)
Q Consensus       166 ~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  242 (321)
                      +|++. ++++++.|+.|++||+++.+....+  ...+...|..++|+|+|++|++++.|+.|++||+.+++....+..|.
T Consensus       259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~  338 (435)
T 4e54_B          259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP  338 (435)
T ss_dssp             CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred             cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence            99876 7889999999999999876544332  23456789999999999999999999999999999988777776543


Q ss_pred             Cc----eeEEEeEEEecCCeEEEEe------------CCCCeEEEEEcccceEEEEec-CCCCCeEEE-EecCCCceEEE
Q 020798          243 NS----KYCISSTFSVTNGKYIVSG------------SEDSCVYLWELQSRKVVQKLE-GHTDPVISV-ASHPTENIIAS  304 (321)
Q Consensus       243 ~~----~~~~~~~~~~~~~~~l~~~------------~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~-~~~p~~~~l~s  304 (321)
                      ..    ...+...+. +++..++++            ..++.|++||..+++.+..+. +|...|.++ +|+|++.+||+
T Consensus       339 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las  417 (435)
T 4e54_B          339 HRHFQHLTPIKAAWH-PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS  417 (435)
T ss_dssp             CCCCSSSCCCBCEEC-SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE
T ss_pred             ccccccceeEEEEEc-CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE
Confidence            21    111222222 334444443            244689999999999887764 688889988 69999999999


Q ss_pred             EeecCCccEEEccccc
Q 020798          305 GALDNDRTVKIWTQEK  320 (321)
Q Consensus       305 ~~~d~~~~i~iw~~~~  320 (321)
                      |+   |+.|+||+.+.
T Consensus       418 g~---d~~i~iW~~~~  430 (435)
T 4e54_B          418 AM---GYHILIWSQQE  430 (435)
T ss_dssp             EC---SSEEEECCCC-
T ss_pred             Ec---CCcEEEEECCc
Confidence            75   46899999874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-44  Score=311.33  Aligned_cols=293  Identities=16%  Similarity=0.276  Sum_probs=246.1

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-CCEEEEEeCCCcEE
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-SRFLVSASDDKTIR   98 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~d~~i~   98 (321)
                      ..|...|++++|+|++++|++++.|+.+++|++....    .....+..+.+|...|.+++|+|+ +++|++++.|+.|+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~  139 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN----NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF  139 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT----SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeeccccc----ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence            3588999999999999999999999999999886421    112356677889999999999998 89999999999999


Q ss_pred             EEecCCcc------eee---eeecCcccEEEEEECCC-CCEEEEeeCCCcEEEEecCCCEEEEEEeCC------CCCeeE
Q 020798           99 LWDVPTAT------CLK---TLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAH------SDPVTA  162 (321)
Q Consensus        99 iwd~~~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------~~~v~~  162 (321)
                      +||+.+.+      ...   ....|...+.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+      ...+.+
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred             EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence            99998876      222   23678899999999999 789999999999999999999988888776      788999


Q ss_pred             EEEccCC-CEEEEEeCCC---eEEEEeCCCCceeeeecc-CCCCCeEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEE
Q 020798          163 VDFNRDG-TMIVTSSYDG---LCRIWDASTGHCMKTLID-DENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYSTGKILK  236 (321)
Q Consensus       163 ~~~~~~~-~~l~~~~~dg---~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~~l~~~~~d~~i~i~d~~~~~~~~  236 (321)
                      ++|+|++ .++++++.++   .|++||++++........ .+...+..++|+| ++++|++++.|+.|++||+++++.+.
T Consensus       220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~  299 (416)
T 2pm9_A          220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS  299 (416)
T ss_dssp             EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE
T ss_pred             EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce
Confidence            9999997 5899999998   999999998643333333 5677899999999 99999999999999999999999999


Q ss_pred             EEeccCCceeEEEeEEEecCC-eEEEEeCCCCeEEEEEcccceEEEEe--------------------------------
Q 020798          237 TYTGHTNSKYCISSTFSVTNG-KYIVSGSEDSCVYLWELQSRKVVQKL--------------------------------  283 (321)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~--------------------------------  283 (321)
                      .+..|...+.++.  + .+++ .+|++++.||.|++||+.+.......                                
T Consensus       300 ~~~~~~~~v~~~~--~-s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (416)
T 2pm9_A          300 QFPARGNWCFKTK--F-APEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL  376 (416)
T ss_dssp             EEECSSSCCCCEE--E-CTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred             eecCCCCceEEEE--E-CCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence            9998877665543  3 3666 89999999999999999776432211                                


Q ss_pred             ---cCCCCCeEEEEecCCCceEEEEeecCCccEEEcccccC
Q 020798          284 ---EGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEKE  321 (321)
Q Consensus       284 ---~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~~  321 (321)
                         ..|..++.+++|+|+|++|++|+  .|+.|+||+++-|
T Consensus       377 ~~~~~~~~~~~~~~~s~dg~~la~~~--~d~~v~~w~~~~~  415 (416)
T 2pm9_A          377 QAPTWYGEPSPAAHWAFGGKLVQITP--DGKGVSITNPKIS  415 (416)
T ss_dssp             CCCSTTCCCSCCCEEETTTEEECBCT--TSSCBCCBCCCCC
T ss_pred             cCCccccCCccceEEeeCCeEEEEeC--CCCeEEEEEeccC
Confidence               11677888999999999999998  4689999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.9e-43  Score=297.08  Aligned_cols=288  Identities=18%  Similarity=0.252  Sum_probs=240.3

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEE
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIR   98 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~   98 (321)
                      ++.|.++|++++|+|++++|++++.|+.|++|++....      ...+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~   77 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY   77 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEE
Confidence            45699999999999999999999999999999875421      114567788999999999999999999999999999


Q ss_pred             EEecCCcceeee--eecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEE----EEEEeCCCCCeeEEEEccCCCEE
Q 020798           99 LWDVPTATCLKT--LIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKC----LKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        99 iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      +||+.+++....  +..|...+.+++|+|++++|++++.|+.|++||++.+..    ......|...|.+++|+|+++.+
T Consensus        78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  157 (372)
T 1k8k_C           78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL  157 (372)
T ss_dssp             EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred             EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence            999988764433  467889999999999999999999999999999987652    22335678999999999999999


Q ss_pred             EEEeCCCeEEEEeCC------------------CCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcE
Q 020798          173 VTSSYDGLCRIWDAS------------------TGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKI  234 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~  234 (321)
                      ++++.|+.+++||++                  .++....+ ..+...+..++|+|++++|++++.|+.|++||+++++.
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  236 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA  236 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred             EEEcCCCCEEEEEcccccccccccccccccccchhhheEec-CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence            999999999999964                  44444443 35566799999999999999999999999999999999


Q ss_pred             EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc--ceE--------------------------------E
Q 020798          235 LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS--RKV--------------------------------V  280 (321)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~--------------------------------~  280 (321)
                      +..+..+.....++.   ..+++.++++| .|+.|++|++..  ++.                                .
T Consensus       237 ~~~~~~~~~~v~~~~---~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
T 1k8k_C          237 VATLASETLPLLAVT---FITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE  312 (372)
T ss_dssp             EEEEECSSCCEEEEE---EEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred             eEEEccCCCCeEEEE---EecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence            999988876655443   34688888887 899999999987  321                                0


Q ss_pred             ------EEe-cCCCCCeEEEEec-CCC---ceEEEEeecCCccEEEcccc
Q 020798          281 ------QKL-EGHTDPVISVASH-PTE---NIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       281 ------~~~-~~h~~~v~~~~~~-p~~---~~l~s~~~d~~~~i~iw~~~  319 (321)
                            ..+ .+|..+|++++|+ +++   .+|++|+  .||.|++|+++
T Consensus       313 ~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~--~Dg~i~~W~~~  360 (372)
T 1k8k_C          313 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG--MDGGMSIWDVR  360 (372)
T ss_dssp             ------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEE--TTSEEEEEEHH
T ss_pred             cCccccccccccccCCcceeEEecCCCcceeeEEEec--CCCceEEEEec
Confidence                  223 4899999999966 666   9999998  45899999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-43  Score=298.61  Aligned_cols=288  Identities=18%  Similarity=0.373  Sum_probs=239.6

Q ss_pred             eeccCCcccEEEEEECCC----CCEEEEecCCceEEEeeccccCCCCCCCCCcccccc-----cccccEEEEEECCC---
Q 020798           17 QTLNGHLRAISSVKFSHD----GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFT-----GHEQGVSDLVFSSD---   84 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~----g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~i~~~~~~~~---   84 (321)
                      ....+|.+.|++++|+|+    ...+++++.++.|++|++....        .+..+.     .|...|.+++|+|+   
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~   83 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQG--------EIRLLQSYVDADADENFYTCAWTYDSNT   83 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGG--------CEEEEEEEECSCTTCCEEEEEEEECTTT
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCc--------EEEeeeeccccCCCCcEEEEEeccCCCC
Confidence            445699999999999984    4456666667799999986432        122222     36688999999998   


Q ss_pred             -CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECC-CCCEEEEeeCCCcEEEEecCCCEEEEEE---eCCCCC
Q 020798           85 -SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVKTGKCLKVL---PAHSDP  159 (321)
Q Consensus        85 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~---~~~~~~  159 (321)
                       +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++....+   ..|...
T Consensus        84 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  163 (366)
T 3k26_A           84 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE  163 (366)
T ss_dssp             CCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred             CCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence             67999999999999999999998888999999999999999 8999999999999999999999988887   679999


Q ss_pred             eeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec---------------------------cCCCCCeEEEEEccCC
Q 020798          160 VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI---------------------------DDENPPVSFVKFSPNG  212 (321)
Q Consensus       160 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~g  212 (321)
                      |.+++|+|+++.+++++.|+.|++||+++++....+.                           ..+...+.+++|+  +
T Consensus       164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  241 (366)
T 3k26_A          164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G  241 (366)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred             eeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence            9999999999999999999999999998765432211                           1256678889998  7


Q ss_pred             CEEEEEecCCeEEEEeCCCCcE--------------EEEEeccCCceeEEEeEEEecC--CeEEEEeCCCCeEEEEEccc
Q 020798          213 KFILVGTLDNTLRLWNYSTGKI--------------LKTYTGHTNSKYCISSTFSVTN--GKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       213 ~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~  276 (321)
                      +++++++.|+.|++||+.+++.              +..+..|...+.++..   .++  +++|++|+.||.|++||+.+
T Consensus       242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~~~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF---SMDFWQKMLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC---EECTTSSEEEEECTTSCEEEEECCS
T ss_pred             CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE---cCCCCCcEEEEEecCCcEEEEECCC
Confidence            7999999999999999887643              6777777666555433   246  99999999999999999988


Q ss_pred             ce----EEEEecCC--CCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          277 RK----VVQKLEGH--TDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       277 ~~----~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ++    ....+.+|  ..+|++++|+|++++|++|+  .|+.|++||+.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~  365 (366)
T 3k26_A          319 EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC--DDASIWRWDRL  365 (366)
T ss_dssp             SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE--TTSEEEEEEC-
T ss_pred             CCCccccceEEcccccCCceEEEEeCCCCCeEEEEe--CCCEEEEEEec
Confidence            64    44567777  78999999999999999998  45899999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-43  Score=299.86  Aligned_cols=291  Identities=17%  Similarity=0.287  Sum_probs=241.6

Q ss_pred             CCcccEEEEEECCCCC-EEEEecCCceEEEeec----cccCC------CC--CCCCCcccccccccccEEEEEECCCCCE
Q 020798           21 GHLRAISSVKFSHDGR-LLASSSADKTLLTYSL----SSISN------SD--STPPSPLQKFTGHEQGVSDLVFSSDSRF   87 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~----~~~~~------~~--~~~~~~~~~~~~h~~~i~~~~~~~~~~~   87 (321)
                      .|.+.|++++|+|+|+ +||+|+.|+.+++|++    .....      ..  ..+........+|...|.+++|+|++++
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            4568999999999999 9999999999999998    43220      00  0000000112236889999999999999


Q ss_pred             EEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE---------------
Q 020798           88 LVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV---------------  152 (321)
Q Consensus        88 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~---------------  152 (321)
                      |++++.|+.|++|| .+++....+.+|...+.+++|+|++++|++++.|+.|++||+++++....               
T Consensus       123 l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  201 (425)
T 1r5m_A          123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN  201 (425)
T ss_dssp             EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred             EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence            99999999999999 56677788889999999999999999999999999999999987765432               


Q ss_pred             -----------------------------------------EeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q 020798          153 -----------------------------------------LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC  191 (321)
Q Consensus       153 -----------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  191 (321)
                                                               +..|..++.+++|+|+++.+++++.|+.|++||+++++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             ----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred             ccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence                                                     234667899999999999999999999999999998876


Q ss_pred             eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEE
Q 020798          192 MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYL  271 (321)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v  271 (321)
                      ...+ ..+...+..++|+|++ ++++++.|+.|++||+++++.+..+..|.....++   ...+++.+|++++.||.|++
T Consensus       282 ~~~~-~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~---~~s~~~~~l~~~~~dg~i~i  356 (425)
T 1r5m_A          282 QNCF-YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG---RISQDGQKYAVAFMDGQVNV  356 (425)
T ss_dssp             SEEE-CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEE---EECTTSSEEEEEETTSCEEE
T ss_pred             ceEe-cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEE---EEcCCCCEEEEEECCCeEEE
Confidence            6655 3456679999999999 99999999999999999999999988877665443   34578999999999999999


Q ss_pred             EEcccce--------------------EEEEecCCCC--CeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          272 WELQSRK--------------------VVQKLEGHTD--PVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       272 wd~~~~~--------------------~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ||+.+++                    .+..+.+|..  +|.+++|+|++++|++++  .|+.|++|+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~  424 (425)
T 1r5m_A          357 YDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY--SLQEGSVVAIP  424 (425)
T ss_dssp             EECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE--SSSCCEEEECC
T ss_pred             EECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe--cCceEEEEeec
Confidence            9999888                    8889999976  999999999999999998  45899999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.1e-43  Score=291.16  Aligned_cols=249  Identities=25%  Similarity=0.448  Sum_probs=225.0

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      +...+.+|...|.+++|+|++.++++++.|+.|++||+..        ...+..+..|...+.+++|+|++++|++++.|
T Consensus        72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~--------~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~d  143 (321)
T 3ow8_A           72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN--------GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHV  143 (321)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--------TEEEEEEECCTTCCCCEEECTTSSEEEEECTT
T ss_pred             eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC--------CCEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence            3456899999999999999999999999999999998753        23455667788889999999999999999999


Q ss_pred             CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEE
Q 020798           95 KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      +.|++|++++++....+..|...+.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++
T Consensus       144 g~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s  223 (321)
T 3ow8_A          144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT  223 (321)
T ss_dssp             SEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEE
T ss_pred             CcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEE
Confidence            99999999999888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEe
Q 020798          175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV  254 (321)
Q Consensus       175 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (321)
                      ++.|+.|++||++++.....+ ..+...+..++|+|++++|++++.|+.|++||+.+++.+..+.+|...+..+.   ..
T Consensus       224 ~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~---~s  299 (321)
T 3ow8_A          224 ASDDGYIKIYDVQHANLAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK---YN  299 (321)
T ss_dssp             ECTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE---EC
T ss_pred             EcCCCeEEEEECCCcceeEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEE---EC
Confidence            999999999999988766655 45667799999999999999999999999999999999999998887755443   34


Q ss_pred             cCCeEEEEeCCCCeEEEEEcc
Q 020798          255 TNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       255 ~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      +++.+|++++.||.|++||..
T Consensus       300 ~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          300 GNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TTSSEEEEEETTCCEEEEECC
T ss_pred             CCCCEEEEEeCCCeEEEEeCC
Confidence            789999999999999999963

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-42  Score=298.35  Aligned_cols=289  Identities=15%  Similarity=0.241  Sum_probs=239.1

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEE
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIR   98 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~   98 (321)
                      +..| ..+....|+|++++|++|+.|+.|++|++..        ......+.+|...|.+++|+|++++|++++.|+.|+
T Consensus        94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~  164 (420)
T 3vl1_A           94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF--------NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLK  164 (420)
T ss_dssp             SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS--------CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC--------cceeeecccccCccEEEEECCCCCEEEEEeCCCeEE
Confidence            3444 4555668899999999999999999998653        234555678999999999999999999999999999


Q ss_pred             EEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC---C------------------
Q 020798           99 LWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH---S------------------  157 (321)
Q Consensus        99 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~------------------  157 (321)
                      +||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||+++++....+..+   .                  
T Consensus       165 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  244 (420)
T 3vl1_A          165 IWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHE  244 (420)
T ss_dssp             EEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGG
T ss_pred             EEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeee
Confidence            9999999988889999999999999999999999999999999999999988877643   2                  


Q ss_pred             ---CCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCC-EEEEEecCCeEEEEeCCCCc
Q 020798          158 ---DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK-FILVGTLDNTLRLWNYSTGK  233 (321)
Q Consensus       158 ---~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~d~~i~i~d~~~~~  233 (321)
                         ..+.+++|+|+++.+++++.||.|++||+++++....+...+...+..++|+|+++ +|++++.|+.|++||+++++
T Consensus       245 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          245 ISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             GCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             cccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence               44555666889999999999999999999998877777666777899999999999 99999999999999999874


Q ss_pred             -EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc---------eEEEEecCCCCCeEEEEecCCCc---
Q 020798          234 -ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR---------KVVQKLEGHTDPVISVASHPTEN---  300 (321)
Q Consensus       234 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~p~~~---  300 (321)
                       ++..+..+....  +...+. +++.+|++++.||.|++|++...         .....+.+|...|.+++|+|++.   
T Consensus       325 ~~~~~~~~~~~~~--v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g  401 (420)
T 3vl1_A          325 CPVGEFLINEGTP--INNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNG  401 (420)
T ss_dssp             SCSEEEEESTTSC--EEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSC
T ss_pred             CchhhhhccCCCC--ceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcc
Confidence             366666643322  233333 47889999999999999998763         12234567888999999999998   


Q ss_pred             eEEEEeecCCccEEEcccccC
Q 020798          301 IIASGALDNDRTVKIWTQEKE  321 (321)
Q Consensus       301 ~l~s~~~d~~~~i~iw~~~~~  321 (321)
                      .+++.+  ++|.+.+|+.+.+
T Consensus       402 ~l~a~g--~~g~~~~~~~~~~  420 (420)
T 3vl1_A          402 EVLEVG--KNNFCALYNLSNP  420 (420)
T ss_dssp             EEEEEE--TTTEEEEEESCC-
T ss_pred             eEEEEc--CCceEEEEeccCC
Confidence            444444  4589999999863

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-42  Score=296.27  Aligned_cols=304  Identities=22%  Similarity=0.323  Sum_probs=243.8

Q ss_pred             eeeeeccCCcccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCc-----ccccccccccEEEEEECC-CCC
Q 020798           14 TLTQTLNGHLRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSP-----LQKFTGHEQGVSDLVFSS-DSR   86 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~i~~~~~~~-~~~   86 (321)
                      +....+.+|.+.|++++|+| ++++|++|+.||.|++|++.............     .....+|...|.+++|+| +++
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            34566789999999999999 99999999999999999987543211110000     111235999999999999 778


Q ss_pred             EEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCC---CCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEE
Q 020798           87 FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ---SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAV  163 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  163 (321)
                      +|++++.|+.|++||+.+++....+. +...+.++.++|.   +.++++++.++.|++||+++++....+..|...|.++
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~  192 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV  192 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred             EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence            99999999999999999988766655 6778899999884   4589999999999999999998888899999999999


Q ss_pred             EEccCCC-EEEEEeCCCeEEEEeCCCCceeeeec---------------cCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 020798          164 DFNRDGT-MIVTSSYDGLCRIWDASTGHCMKTLI---------------DDENPPVSFVKFSPNGKFILVGTLDNTLRLW  227 (321)
Q Consensus       164 ~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~---------------~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~  227 (321)
                      +|+|++. ++++++.||.|++||++++.......               ..+...+..++|+|++++|++++.|+.|++|
T Consensus       193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW  272 (408)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence            9999998 58899999999999998764221111               3455679999999999999999999999999


Q ss_pred             eCCCCcEEEEEeccCC--ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEE
Q 020798          228 NYSTGKILKTYTGHTN--SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG  305 (321)
Q Consensus       228 d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  305 (321)
                      |+.+++....+..+..  .............+..+++++.++.|++||+.+++.+..+.+|..+|.+++|+|++++|++|
T Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  352 (408)
T 4a11_B          273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG  352 (408)
T ss_dssp             ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence            9998876544332211  01111122222345567777889999999999999999999999999999999999999999


Q ss_pred             eecCCccEEEccccc
Q 020798          306 ALDNDRTVKIWTQEK  320 (321)
Q Consensus       306 ~~d~~~~i~iw~~~~  320 (321)
                      +.  ||.|++|+.+.
T Consensus       353 ~~--dg~i~iw~~~~  365 (408)
T 4a11_B          353 SR--DCNILAWVPSL  365 (408)
T ss_dssp             ET--TSCEEEEEECC
T ss_pred             CC--CCeEEEEeCCC
Confidence            84  58999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.6e-42  Score=319.41  Aligned_cols=292  Identities=21%  Similarity=0.376  Sum_probs=259.5

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      .+.+.+++|...|++++|+|+|++||+++.||.|++|++..        ...+..+.+|...|.+++|+|++++|++++.
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   75 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET--------QVEVRSIQVTETPVRAGKFIARKNWIIVGSD   75 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--------TEEEEEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC--------CceEEEEecCCCcEEEEEEeCCCCEEEEEeC
Confidence            45677899999999999999999999999999999998753        3356677889999999999999999999999


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEcc-CCCE
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNR-DGTM  171 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~  171 (321)
                      ||.|++||+.+++....+.+|...|.+++|+|++.+|++++.||.|++||+.++ .....+..|..++.+++|+| ++..
T Consensus        76 dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  155 (814)
T 3mkq_A           76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (814)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE
Confidence            999999999999998999999999999999999999999999999999999887 67778889999999999999 7889


Q ss_pred             EEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc--CCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEE
Q 020798          172 IVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP--NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCIS  249 (321)
Q Consensus       172 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  249 (321)
                      +++++.||.|++||++++.....+...+...+..++|+|  ++.++++++.|+.|++||+.+++.+..+.+|...+.++ 
T Consensus       156 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~-  234 (814)
T 3mkq_A          156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA-  234 (814)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEE-
T ss_pred             EEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEE-
Confidence            999999999999999887766666655557788999999  99999999999999999999999999998887765443 


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCc--eEEEEeecCCccEEEcccc
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN--IIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~~~d~~~~i~iw~~~  319 (321)
                        ...+++.++++++.||.|++||+.+++.+..+..|..++.+++|+|++.  ++++++   ++.+.+|+..
T Consensus       235 --~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  301 (814)
T 3mkq_A          235 --VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF---DNGFTVLSLG  301 (814)
T ss_dssp             --EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE---TTEEEEEECS
T ss_pred             --EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe---CCCEEEEEcC
Confidence              3457899999999999999999999999999999999999999999987  455554   3457788764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.7e-42  Score=288.74  Aligned_cols=252  Identities=25%  Similarity=0.467  Sum_probs=222.5

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      .....+..|...|.+++|+|+|++|++|+.|+.+++|++....    ........+.+|...|.++.|++++. +++++.
T Consensus        88 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~  162 (340)
T 1got_B           88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE----GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG  162 (340)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS----BSCEEEEEEECCSSCEEEEEEEETTE-EEEEET
T ss_pred             CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC----CcceeEEEecCCCccEEEEEECCCCc-EEEEEC
Confidence            3456678899999999999999999999999999999976421    11223456778999999999998875 889999


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEE
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV  173 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  173 (321)
                      |+.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||++++++...+..|...|.+++|+|+++.|+
T Consensus       163 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~  242 (340)
T 1got_B          163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA  242 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEE
Confidence            99999999999999899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeeeeccC-CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEE
Q 020798          174 TSSYDGLCRIWDASTGHCMKTLIDD-ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF  252 (321)
Q Consensus       174 ~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  252 (321)
                      +++.|++|++||+++++....+... ....+..++|+|+|++|++++.|+.|++||+.+++.+..+.+|...+.++.   
T Consensus       243 s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~---  319 (340)
T 1got_B          243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG---  319 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE---
T ss_pred             EEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEE---
Confidence            9999999999999988766554322 234689999999999999999999999999999999999999988766543   


Q ss_pred             EecCCeEEEEeCCCCeEEEEE
Q 020798          253 SVTNGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       253 ~~~~~~~l~~~~~dg~i~vwd  273 (321)
                      ..+++.+|++|+.||.|++||
T Consensus       320 ~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          320 VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCCEEEEEcCCccEEecC
Confidence            347899999999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-43  Score=303.87  Aligned_cols=289  Identities=19%  Similarity=0.383  Sum_probs=243.2

Q ss_pred             CcccEEEEEECCCCC-EEEEe----------cCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE
Q 020798           22 HLRAISSVKFSHDGR-LLASS----------SADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        22 h~~~v~~~~~s~~g~-~l~~~----------~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~   90 (321)
                      +...|.+++|+|+|+ +|+++          +.|+.|++|++......     .++.. ..|...|.+++|+|++++|++
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-----~~~~~-~~~~~~v~~~~~s~~~~~l~~   84 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-----KPIAS-LQVDSKFNDLDWSHNNKIIAG   84 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-----SCSCC-CCCSSCEEEEEECSSSSCEEE
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-----cEEEE-EecCCceEEEEECCCCCeEEE
Confidence            456788999999997 99999          89999999998653211     12222 257889999999999999999


Q ss_pred             EeCCCcEEEEecCC----cceeeeeecCcccEEEEEECCC-CCEEEEeeCCCcEEEEecCCCE------EEEE---EeCC
Q 020798           91 ASDDKTIRLWDVPT----ATCLKTLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGK------CLKV---LPAH  156 (321)
Q Consensus        91 ~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~------~~~~---~~~~  156 (321)
                      ++.|+.|++||+..    .+....+.+|...|.+++|+|+ +++|++++.|+.|++||+++++      ....   ...|
T Consensus        85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  164 (416)
T 2pm9_A           85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS  164 (416)
T ss_dssp             EESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred             EccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence            99999999999987    3467788899999999999998 8899999999999999998876      2222   3568


Q ss_pred             CCCeeEEEEccC-CCEEEEEeCCCeEEEEeCCCCceeeeeccCC-----CCCeEEEEEccCC-CEEEEEecCC---eEEE
Q 020798          157 SDPVTAVDFNRD-GTMIVTSSYDGLCRIWDASTGHCMKTLIDDE-----NPPVSFVKFSPNG-KFILVGTLDN---TLRL  226 (321)
Q Consensus       157 ~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~g-~~l~~~~~d~---~i~i  226 (321)
                      ...+.+++|+|+ +..+++++.|+.|++||+++++....+....     ...+..++|+|++ .++++++.|+   .|++
T Consensus       165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~  244 (416)
T 2pm9_A          165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI  244 (416)
T ss_dssp             SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred             CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE
Confidence            889999999999 7899999999999999999988776664432     5679999999997 6889999998   9999


Q ss_pred             EeCCCC-cEEEEEe-ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCC-ceEE
Q 020798          227 WNYSTG-KILKTYT-GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE-NIIA  303 (321)
Q Consensus       227 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~  303 (321)
                      ||++++ +.+..+. +|...+.++  .+.+.++.+|++++.||.|++||+++++.+..+.+|..+|.+++|+|++ .+|+
T Consensus       245 ~d~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~  322 (416)
T 2pm9_A          245 WDLRNANTPLQTLNQGHQKGILSL--DWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA  322 (416)
T ss_dssp             EETTSTTSCSBCCCSCCSSCEEEE--EECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEE
T ss_pred             EeCCCCCCCcEEeecCccCceeEE--EeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEE
Confidence            999986 5666666 676655443  3333389999999999999999999999999999999999999999999 8999


Q ss_pred             EEeecCCccEEEccccc
Q 020798          304 SGALDNDRTVKIWTQEK  320 (321)
Q Consensus       304 s~~~d~~~~i~iw~~~~  320 (321)
                      +++.  |+.|++|+++.
T Consensus       323 s~~~--d~~i~iw~~~~  337 (416)
T 2pm9_A          323 CASF--DNKIEVQTLQN  337 (416)
T ss_dssp             ECCS--SSEEEEEESCC
T ss_pred             EEec--CCcEEEEEccC
Confidence            9984  58999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.6e-44  Score=301.65  Aligned_cols=285  Identities=13%  Similarity=0.149  Sum_probs=223.6

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEE
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRL   99 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~i   99 (321)
                      +.|..+|++++|+|+|++|++|+.|+.|++|++...      ....+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v   81 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV   81 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            346779999999999999999999999999998632      01345677889999999999999999999999999999


Q ss_pred             EecCCcc---eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEE---EEEEeC-CCCCeeEEEEccCCCEE
Q 020798          100 WDVPTAT---CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKC---LKVLPA-HSDPVTAVDFNRDGTMI  172 (321)
Q Consensus       100 wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~l  172 (321)
                      ||+.+++   ....+.+|...|.+++|+|++++|++++.|+.|++||+++++.   ...+.. |...|.+++|+|++++|
T Consensus        82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            9998876   5666778999999999999999999999999999999988763   566666 99999999999999999


Q ss_pred             EEEeCCCeEEEEeCCC------------------CceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcE
Q 020798          173 VTSSYDGLCRIWDAST------------------GHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKI  234 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~  234 (321)
                      ++++.|+.|++||++.                  +++...+  .+...+..++|+|++++|++++.|+.|++||+.+++.
T Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            9999999999999852                  2333333  5667899999999999999999999999999998876


Q ss_pred             ----EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce--------------------------------
Q 020798          235 ----LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK--------------------------------  278 (321)
Q Consensus       235 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------------------------  278 (321)
                          +..+..|...+.++.   ..+++++|++|+.++.+ +|+.....                                
T Consensus       240 ~~~~~~~~~~~~~~v~~~~---~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (377)
T 3dwl_C          240 PPRALITVKLSQLPLRSLL---WANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPV  315 (377)
T ss_dssp             CEEECCCEECSSSCEEEEE---EEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----
T ss_pred             cceeeEeecCCCCceEEEE---EcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccc
Confidence                677777777655443   34789999999877766 66654211                                


Q ss_pred             -------EEE-------------EecCCCCCeEEEEecCCCc----eEEEEeecCCccEEEccc
Q 020798          279 -------VVQ-------------KLEGHTDPVISVASHPTEN----IIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       279 -------~~~-------------~~~~h~~~v~~~~~~p~~~----~l~s~~~d~~~~i~iw~~  318 (321)
                             ...             ....|.+.|+++++.+...    .|+|||.  ||.|+|||+
T Consensus       316 ~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~--Dg~i~iWdl  377 (377)
T 3dwl_C          316 SFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGT--DGRVVLWTL  377 (377)
T ss_dssp             ---------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEET--TSEEEEECC
T ss_pred             ccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecC--CCcEEEecC
Confidence                   000             0112899999999766543    5999985  589999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.3e-42  Score=293.21  Aligned_cols=287  Identities=15%  Similarity=0.194  Sum_probs=216.6

Q ss_pred             ccEEEEEECCCCCEEEEecCC-------ceEEEeeccccCCCCCCCCC--cccccccccccEEEEEECCCCCEEEEEe--
Q 020798           24 RAISSVKFSHDGRLLASSSAD-------KTLLTYSLSSISNSDSTPPS--PLQKFTGHEQGVSDLVFSSDSRFLVSAS--   92 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d-------~~v~~~~~~~~~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~l~~~~--   92 (321)
                      .+|++++|+|||++|++|+.+       +.|++|++............  ....+.+|...|.+++++  ++.+++|+  
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence            589999999999999998754       35999987542211000000  112356777888887764  45666653  


Q ss_pred             ---------CCCcEEEEecCCcceee----e-----eecCcccEEEEEECCCCCEEEE--eeCCCcEEEEecCCCEEEEE
Q 020798           93 ---------DDKTIRLWDVPTATCLK----T-----LIGHTNYVFCVNFNPQSNMIVS--GAFDETVRIWDVKTGKCLKV  152 (321)
Q Consensus        93 ---------~d~~i~iwd~~~~~~~~----~-----~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~~wd~~~~~~~~~  152 (321)
                               .|+.+++|++.......    .     ...+...+.+++|+|||+++++  ++.|++|++||+++++++..
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence                     56789999986543211    1     1234456889999999998764  45789999999999998888


Q ss_pred             EeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceee-eeccCCCCCeEEEEEccCCCEEEEEecCC----eEEEE
Q 020798          153 LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK-TLIDDENPPVSFVKFSPNGKFILVGTLDN----TLRLW  227 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~~~d~----~i~i~  227 (321)
                      +. |...|.+++|+|+++++++++.++ +.+|+..+++... .....+...+..++|+|+++++++++.|+    .+++|
T Consensus       173 ~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          173 IE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             EE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             eC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            75 777899999999999999988665 5556555555443 33344566789999999999999998887    68889


Q ss_pred             eCCCCcE----EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEe-cCCCCCeEEEEecCCCceE
Q 020798          228 NYSTGKI----LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL-EGHTDPVISVASHPTENII  302 (321)
Q Consensus       228 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l  302 (321)
                      ++.....    ...+.+|...+.+   ....|+|++||+|+.|+.|+|||+++++++..+ .+|..+|++++|+||+++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~---~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~l  327 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITS---MDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYV  327 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEE---EEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred             ccccceecceeeeeecCCCCCeEe---EEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEE
Confidence            9876543    3345566665444   334589999999999999999999999998875 7899999999999999999


Q ss_pred             EEEeecCCccEEEcccc
Q 020798          303 ASGALDNDRTVKIWTQE  319 (321)
Q Consensus       303 ~s~~~d~~~~i~iw~~~  319 (321)
                      |+||.  |++|+||++.
T Consensus       328 aS~S~--D~tvrvw~ip  342 (365)
T 4h5i_A          328 ASVSA--ANTIHIIKLP  342 (365)
T ss_dssp             EEEET--TSEEEEEECC
T ss_pred             EEEeC--CCeEEEEEcC
Confidence            99995  5899999984

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8.4e-42  Score=295.99  Aligned_cols=291  Identities=20%  Similarity=0.376  Sum_probs=229.2

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCC---CCCCCccccccccc------------ccEEEEEECCCC-
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSD---STPPSPLQKFTGHE------------QGVSDLVFSSDS-   85 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~---~~~~~~~~~~~~h~------------~~i~~~~~~~~~-   85 (321)
                      |.+.|++++|+|+|++||+|+.||.|++|++.......   .........+.+|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            67899999999999999999999999999987543211   11112355677898            889999999998 


Q ss_pred             -CEEEEEeCCCcEEEEecCCccee---------------------------------------ee-eecCcccEEEEEEC
Q 020798           86 -RFLVSASDDKTIRLWDVPTATCL---------------------------------------KT-LIGHTNYVFCVNFN  124 (321)
Q Consensus        86 -~~l~~~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~  124 (321)
                       .+|++++.|+.|++||+.++...                                       .. ..+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             78999999999999998764331                                       11 35799999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEecCC-CEEEE-------EEeCCCCCeeEEEEccCC-CEEEEEeCCCeEEEEeCCCCce----
Q 020798          125 PQSNMIVSGAFDETVRIWDVKT-GKCLK-------VLPAHSDPVTAVDFNRDG-TMIVTSSYDGLCRIWDASTGHC----  191 (321)
Q Consensus       125 ~~~~~l~~~~~dg~i~~wd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~----  191 (321)
                      |++++|+++ .|+.|++||++. ++...       .+..|...|.+++|+|++ ..|++++.||.|++||+++++.    
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  265 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH  265 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence            999999998 799999999984 33443       245788999999999998 8999999999999999998765    


Q ss_pred             eeeeccCCCC------------CeEEEEEccCCCEEEEEecCCeEEEEeCCC-CcEEEEEeccCCcee------------
Q 020798          192 MKTLIDDENP------------PVSFVKFSPNGKFILVGTLDNTLRLWNYST-GKILKTYTGHTNSKY------------  246 (321)
Q Consensus       192 ~~~~~~~~~~------------~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~------------  246 (321)
                      ...+. .+..            .+..++|+|+|++|++++. +.|++||+++ ++.+..+..|.....            
T Consensus       266 ~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          266 SKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             CEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred             eeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence            33333 3332            7999999999999999988 9999999987 788888877643111            


Q ss_pred             EEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec---------------------------------CCCCCeEEE
Q 020798          247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE---------------------------------GHTDPVISV  293 (321)
Q Consensus       247 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------------------------------~h~~~v~~~  293 (321)
                      .+......+++.+|++|+.||.|++||+.+++.+. +.                                 .+...|..+
T Consensus       344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  422 (447)
T 3dw8_B          344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT  422 (447)
T ss_dssp             CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred             cceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence            00012334789999999999999999999887653 22                                 234578999


Q ss_pred             EecCCCceEEEEeecCCccEEEcccc
Q 020798          294 ASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       294 ~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +|+|++++||+++.+   .+++|..+
T Consensus       423 ~~~p~~~~la~~~~~---~~~~~~~~  445 (447)
T 3dw8_B          423 AWHPKENIIAVATTN---NLYIFQDK  445 (447)
T ss_dssp             EECSSSSEEEEECSS---CEEEEECC
T ss_pred             EECCCCCEEEEEecc---eeeeeccc
Confidence            999999999999743   48888754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.1e-41  Score=277.07  Aligned_cols=247  Identities=23%  Similarity=0.431  Sum_probs=206.8

Q ss_pred             ccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC--cceeeeeecCcccEEEEEECCC--CCEEEEeeCCCcEEEEe
Q 020798           68 KFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT--ATCLKTLIGHTNYVFCVNFNPQ--SNMIVSGAFDETVRIWD  143 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd  143 (321)
                      .+.+|...|.+++|+|+|++|++|+.|+.|++||+..  .+.+..+.+|...|.+++|+|+  +++|++|+.|++|++||
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            4578999999999999999999999999999999974  3567788999999999999874  88999999999999999


Q ss_pred             cCCCE--EEEEEeCCCCCeeEEEEccC--CCEEEEEeCCCeEEEEeCCCCcee-eeeccCCCCCeEEEEEccC-------
Q 020798          144 VKTGK--CLKVLPAHSDPVTAVDFNRD--GTMIVTSSYDGLCRIWDASTGHCM-KTLIDDENPPVSFVKFSPN-------  211 (321)
Q Consensus       144 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~-------  211 (321)
                      +++++  ....+..|...|.+++|+|+  +..|++++.|+.|++||++.+... ......+...+..++|+|+       
T Consensus        84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  163 (297)
T 2pm7_B           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  163 (297)
T ss_dssp             BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred             cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence            98764  45566789999999999997  789999999999999999865321 2334456678999999997       


Q ss_pred             ------CCEEEEEecCCeEEEEeCCCCc----EEEEEeccCCceeEEEeEEEecC---CeEEEEeCCCCeEEEEEcccce
Q 020798          212 ------GKFILVGTLDNTLRLWNYSTGK----ILKTYTGHTNSKYCISSTFSVTN---GKYIVSGSEDSCVYLWELQSRK  278 (321)
Q Consensus       212 ------g~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~  278 (321)
                            +++|++++.|+.|++||+++++    .+..+.+|...+.++.  | .|+   +.+|++++.|++|++||++...
T Consensus       164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~--~-sp~~~~~~~las~s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA--W-SPTVLLRSYMASVSQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE--E-CCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE--E-CCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence                  5799999999999999998765    5667888887765543  3 355   5899999999999999997642


Q ss_pred             ---EEEEe--cCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          279 ---VVQKL--EGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       279 ---~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                         ....+  ..|...|.+++|+|++++||+++.  |+.|+||+..
T Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~--D~~v~lw~~~  284 (297)
T 2pm7_B          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKEN  284 (297)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET--TSCEEEEEEC
T ss_pred             CccceeeeecccCCCcEEEEEECCCCCEEEEEcC--CCcEEEEEEC
Confidence               12233  568889999999999999999984  5899999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.3e-41  Score=280.54  Aligned_cols=282  Identities=18%  Similarity=0.307  Sum_probs=235.2

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      |.++|.+++|+|||++++++..++.+..|...        .........+|...|.+++|+|++++|++++ ||.|++||
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~   78 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIP--------RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWD   78 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCC--------SEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEE
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccC--------CccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEE
Confidence            56789999999999999988877765444221        1112223447999999999999999999998 99999999


Q ss_pred             cCCccee---eeee--cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE--EEEEEeCCCCCeeEEEEccCCCEEEE
Q 020798          102 VPTATCL---KTLI--GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK--CLKVLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus       102 ~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      +.++...   ..+.  .|...+.+++|+|++++|++++.|+.|++||+++++  ....+..|...+.+++|+|+++.+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  158 (337)
T 1gxr_A           79 ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS  158 (337)
T ss_dssp             TTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEE
Confidence            9876532   2222  788999999999999999999999999999998876  56677889999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEe
Q 020798          175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV  254 (321)
Q Consensus       175 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (321)
                      ++.|+.+++||+++++....+. .+...+..++|+|+++++++++.|+.|++||+++++.+..+.. .....   .....
T Consensus       159 ~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~v~---~~~~s  233 (337)
T 1gxr_A          159 CCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-TSQIF---SLGYC  233 (337)
T ss_dssp             EETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SSCEE---EEEEC
T ss_pred             EeCCCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-CCceE---EEEEC
Confidence            9999999999999887766653 4566799999999999999999999999999999988877653 33333   33345


Q ss_pred             cCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          255 TNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ++++++++++.++.|++||+.+++.. .+..|..+|.+++|+|++++|++++.  |+.|++|+.+.
T Consensus       234 ~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~~~~~  296 (337)
T 1gxr_A          234 PTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGK--DNLLNAWRTPY  296 (337)
T ss_dssp             TTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEET--TSEEEEEETTT
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecC--CCcEEEEECCC
Confidence            78999999999999999999887754 57789999999999999999999984  58999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.8e-41  Score=282.56  Aligned_cols=265  Identities=23%  Similarity=0.426  Sum_probs=226.2

Q ss_pred             ccccccCC--cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEE
Q 020798            4 DQSLESFR--PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVF   81 (321)
Q Consensus         4 ~~~~~~~~--~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~   81 (321)
                      |..+..|+  +....+.+..|...|.+++|+|+|++|++|+.|+.+++|++......  ........+.+|...|.+++|
T Consensus        85 Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~  162 (354)
T 2pbi_B           85 DGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE--NMAAKKKSVAMHTNYLSACSF  162 (354)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC--CSGGGCEEEEECSSCEEEEEE
T ss_pred             CCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc--cccccceeeeccCCcEEEEEE
Confidence            34444443  23345667788899999999999999999999999999987542211  112334566789999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECC--CCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCC
Q 020798           82 SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP--QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP  159 (321)
Q Consensus        82 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  159 (321)
                      +|+++.|++++.|++|++||+++++++..+.+|...+.+++++|  +++.|++|+.|+.|++||+++++++..+..|...
T Consensus       163 ~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~  242 (354)
T 2pbi_B          163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD  242 (354)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC
Confidence            99999999999999999999999999999999999999999987  4689999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC-CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          160 VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD-ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       160 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      |.+++|+|++..|++++.|++|++||++.++....+... ....+..++|+|+|++|++++.|+.|++||+.+++.+..+
T Consensus       243 v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          243 VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL  322 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE
Confidence            999999999999999999999999999987665544322 2346789999999999999999999999999999999999


Q ss_pred             eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEE
Q 020798          239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd  273 (321)
                      .+|...+.++   ...+++.+|++|+.||.|++|+
T Consensus       323 ~~h~~~v~~l---~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          323 FGHENRVSTL---RVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CCCSSCEEEE---EECTTSSCEEEEETTSEEEEEC
T ss_pred             ECCCCcEEEE---EECCCCCEEEEEcCCCCEEecC
Confidence            9988775554   3458999999999999999995

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.3e-41  Score=302.06  Aligned_cols=294  Identities=19%  Similarity=0.306  Sum_probs=248.8

Q ss_pred             eeeeeccCCccc-EEEEEECC--CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE
Q 020798           14 TLTQTLNGHLRA-ISSVKFSH--DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        14 ~~~~~~~~h~~~-v~~~~~s~--~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~   90 (321)
                      ...+.+.+|... |++++|+|  ++++|++++.|+.|++|++.............+..+..|...|.+++|+|++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            566778999999 99999999  999999999999999999853210000012345567789999999999999999999


Q ss_pred             EeCC----CcEEEEecCCcceeeeeecCcccEEEEEECCCCC-EEEEeeCCCcEEEEecCCCEEEEEEeCCCC---CeeE
Q 020798           91 ASDD----KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGKCLKVLPAHSD---PVTA  162 (321)
Q Consensus        91 ~~~d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---~v~~  162 (321)
                      ++.+    +.|.+||  .++....+.+|...|.+++|+|++. .+++++.|+.|++||+.+++....+..|..   .|.+
T Consensus       134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~  211 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  211 (615)
T ss_dssp             EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE
Confidence            9988    6888888  5566778889999999999999997 799999999999999999999999999998   9999


Q ss_pred             EEEccC-CCEEEEEeCCCeEEEEeCCCCceeeeecc---CCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          163 VDFNRD-GTMIVTSSYDGLCRIWDASTGHCMKTLID---DENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       163 ~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      ++|+|+ ++.+++++.|+.|++||+++++....+..   .+...+..+.|+ ++++|++++.|+.|++||+.+++.+..+
T Consensus       212 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~  290 (615)
T 1pgu_A          212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW  290 (615)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            999999 99999999999999999999887777634   667789999999 9999999999999999999999998888


Q ss_pred             eccCCc--eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEc
Q 020798          239 TGHTNS--KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW  316 (321)
Q Consensus       239 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw  316 (321)
                      ..+...  .......+  +++.++++++.||.|++||+.+++.+..+.+|..+|.+++| |+   |++++  .|+.|++|
T Consensus       291 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~--~dg~i~~w  362 (615)
T 1pgu_A          291 TLDKQQLGNQQVGVVA--TGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGS--YDGRIMEW  362 (615)
T ss_dssp             ECCTTCGGGCEEEEEE--EETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEE--TTSCEEET
T ss_pred             cCCCCcccCceeEEEe--CCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEEC--CCCeEEEE
Confidence            765211  11222222  37889999999999999999999999999999999999999 87   67766  34678888


Q ss_pred             cc
Q 020798          317 TQ  318 (321)
Q Consensus       317 ~~  318 (321)
                      +.
T Consensus       363 ~~  364 (615)
T 1pgu_A          363 SS  364 (615)
T ss_dssp             TT
T ss_pred             Ec
Confidence            75

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-40  Score=322.32  Aligned_cols=289  Identities=26%  Similarity=0.455  Sum_probs=255.1

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      ..+.+|.+.|++++|+|+|++|++|+.|+.|++|++..        ...+..+.+|...|.+++|+|++++|++++.|+.
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~--------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~  680 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET--------GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK  680 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC--------CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCe
Confidence            45679999999999999999999999999999998754        2356678899999999999999999999999999


Q ss_pred             EEEEecCCcceeeeeecCcccEEEEEECC--CCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEE
Q 020798           97 IRLWDVPTATCLKTLIGHTNYVFCVNFNP--QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      |++||+.+++.+..+.+|...+.+++|+|  ++..+++++.|+.|++||++++++...+..|...|.+++|+|+++.+++
T Consensus       681 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  760 (1249)
T 3sfz_A          681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS  760 (1249)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             EEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEE
Confidence            99999999999999999999999999999  4568999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeeeeccC------------CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEe-cc
Q 020798          175 SSYDGLCRIWDASTGHCMKTLIDD------------ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT-GH  241 (321)
Q Consensus       175 ~~~dg~i~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~  241 (321)
                      ++.||.|++||++++.....+...            ....+.+++|+|+|+.+++++ ++.+.+||+.++..+..+. +|
T Consensus       761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~  839 (1249)
T 3sfz_A          761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGH  839 (1249)
T ss_dssp             EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSS
T ss_pred             EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCC
Confidence            999999999999887665443211            122567889999999998876 7899999999998887775 55


Q ss_pred             CCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .....++   ...+++.++++++.||.|++||+.++..+..+.+|..+|.+++|+|++++|++++.  |+.|++|+.+
T Consensus       840 ~~~v~~~---~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~--dg~v~vw~~~  912 (1249)
T 3sfz_A          840 HSTIQYC---DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD--DQTIRVWETK  912 (1249)
T ss_dssp             SSCCCEE---EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEEHH
T ss_pred             CCceEEE---EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeC--CCeEEEEEcc
Confidence            5554433   34578999999999999999999999999999999999999999999999999984  5899999964

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.5e-41  Score=280.55  Aligned_cols=248  Identities=17%  Similarity=0.225  Sum_probs=202.5

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      |..+|.+++|+|++ .|++|+.||.|++||+.....    .......+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~----~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd  155 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVASDSGAVELWELDENET----LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD  155 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSS----CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCc----eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            55689999999985 678999999999999864221    0111223458999999999999999999999999999999


Q ss_pred             cCCcceeeeeecCcccEEEEEECCCCC-EEEEeeCCCcEEEEecCCCEEEEEEe--CCCCCeeEEEEccC-CCEEEEEeC
Q 020798          102 VPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGKCLKVLP--AHSDPVTAVDFNRD-GTMIVTSSY  177 (321)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~  177 (321)
                      +.+++++..+.+|...|.+++|+|++. .|++++.|+.|++||+++++....+.  .+...+.+++|+|+ +.++++++.
T Consensus       156 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~  235 (344)
T 4gqb_B          156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE  235 (344)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred             CCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc
Confidence            999999999999999999999999874 78999999999999999988776653  45567899999995 568889999


Q ss_pred             CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCC-CEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecC
Q 020798          178 DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNG-KFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       178 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (321)
                      |+.|++||+++++++..+. .+...|..++|+|++ ++|++++.|+.|++||+.+++++ .+.+|...+.++.  |. ++
T Consensus       236 dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~--~s-p~  310 (344)
T 4gqb_B          236 NGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDAT--WS-PL  310 (344)
T ss_dssp             TSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEE--EC-SS
T ss_pred             CCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEE--Ee-CC
Confidence            9999999999988777654 466789999999998 57889999999999999988765 4678877765443  33 55


Q ss_pred             C-eEEEEeCCCCeEEEEEcccceE
Q 020798          257 G-KYIVSGSEDSCVYLWELQSRKV  279 (321)
Q Consensus       257 ~-~~l~~~~~dg~i~vwd~~~~~~  279 (321)
                      + .+|++|+.||+|++|++.+...
T Consensus       311 ~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          311 NHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             STTEEEEEETTSCEEEEECCC---
T ss_pred             CCeEEEEEcCCCeEEEEECCCCCC
Confidence            5 5778999999999999976543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.3e-41  Score=283.08  Aligned_cols=283  Identities=14%  Similarity=0.155  Sum_probs=237.7

Q ss_pred             eeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCC-EEEEEeCC
Q 020798           16 TQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR-FLVSASDD   94 (321)
Q Consensus        16 ~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~~~~~d   94 (321)
                      .....+|.+.|++++|+|++++|++++.|+.|++|++....     ...+...+.+|...|.+++|+|+++ +|++++.|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d   78 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC-----ccccceeeeecCCceEEEEECCCCCcEEEEEcCC
Confidence            34456899999999999999999999999999999986421     1112345568999999999999999 99999999


Q ss_pred             CcEEEEec-CCcceeeeeec--CcccEEEEEECCCCCEEEEeeCCCcEEEEecCC---------CEEEEEEeCCCCCeeE
Q 020798           95 KTIRLWDV-PTATCLKTLIG--HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT---------GKCLKVLPAHSDPVTA  162 (321)
Q Consensus        95 ~~i~iwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~  162 (321)
                      |.|++||+ .+++. ..+.+  |...|.+++|+| ++.|++++.|+.|++||+++         ++++..+. |...+.+
T Consensus        79 g~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~  155 (342)
T 1yfq_A           79 GEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFT  155 (342)
T ss_dssp             SCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEE
T ss_pred             CeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEE
Confidence            99999999 77764 66778  999999999999 99999999999999999987         55555555 8889999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCCC-Cce-eeeeccCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEeCCCC------c
Q 020798          163 VDFNRDGTMIVTSSYDGLCRIWDAST-GHC-MKTLIDDENPPVSFVKFSP-NGKFILVGTLDNTLRLWNYSTG------K  233 (321)
Q Consensus       163 ~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~-~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~~i~i~d~~~~------~  233 (321)
                      ++|+|++  +++++.++.|++||+++ +.. .......+...+..++|+| +++++++++.|+.|++|++...      +
T Consensus       156 ~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~  233 (342)
T 1yfq_A          156 MDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             EEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             EEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence            9999887  89999999999999987 543 2333345566799999999 9999999999999999999876      7


Q ss_pred             EEEEEeccCCc------eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCC-CCCeEEEEecCCCceEEEEe
Q 020798          234 ILKTYTGHTNS------KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGH-TDPVISVASHPTENIIASGA  306 (321)
Q Consensus       234 ~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~  306 (321)
                      .+..+..|...      ...+......+++++|++++.||.|++||+.+++.+..+.+| ..+|.+++  |++++|++|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s  311 (342)
T 1yfq_A          234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLAT  311 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred             cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEe
Confidence            77778776540      112333344578999999999999999999999999999998 99999999  9999999999


Q ss_pred             ecCCcc
Q 020798          307 LDNDRT  312 (321)
Q Consensus       307 ~d~~~~  312 (321)
                      .|  +.
T Consensus       312 ~D--g~  315 (342)
T 1yfq_A          312 SD--DT  315 (342)
T ss_dssp             EC--TH
T ss_pred             cC--Cc
Confidence            66  55

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.2e-40  Score=272.96  Aligned_cols=251  Identities=35%  Similarity=0.609  Sum_probs=219.6

Q ss_pred             cccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           65 PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        65 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      ....+.+|...|.+++|+|++++|++++.|+.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence            34567899999999999999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             CCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeE
Q 020798          145 KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTL  224 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i  224 (321)
                      ++++.+..+..|...|.+++|+|+++.+++++.|+.|++||+++++....+. .+...+..++|+|+++++++++.|+.|
T Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
T 4ery_A           95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLC  173 (312)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence            9999999999999999999999999999999999999999999888766653 456679999999999999999999999


Q ss_pred             EEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEE---EEecCCCce
Q 020798          225 RLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVIS---VASHPTENI  301 (321)
Q Consensus       225 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~---~~~~p~~~~  301 (321)
                      ++||+++++.+..+......  .+......+++++|++++.||.|++||+++++.+..+.+|...+..   ....+++.+
T Consensus       174 ~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
T 4ery_A          174 RIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW  251 (312)
T ss_dssp             EEEETTTCCEEEEECCSSCC--CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred             EEEECCCCceeeEEeccCCC--ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence            99999999888777543322  2333445688999999999999999999999999999888765433   333467889


Q ss_pred             EEEEeecCCccEEEccccc
Q 020798          302 IASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       302 l~s~~~d~~~~i~iw~~~~  320 (321)
                      |++|+  .|+.|++||.+.
T Consensus       252 l~sg~--~dg~i~vwd~~~  268 (312)
T 4ery_A          252 IVSGS--EDNLVYIWNLQT  268 (312)
T ss_dssp             EEECC--TTSCEEEEETTT
T ss_pred             EEEEC--CCCEEEEEECCC
Confidence            99998  458999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.5e-41  Score=288.19  Aligned_cols=281  Identities=19%  Similarity=0.270  Sum_probs=232.0

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT  104 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  104 (321)
                      .+++++|+|+|++|++++.|+.+++|++.....        ...+..| ..+....|++++++|++++.|+.|++||+.+
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  128 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG--------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF  128 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEET--------TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccce--------eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence            345789999999999999999999998764321        2233344 4455567899999999999999999999999


Q ss_pred             cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 020798          105 ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW  184 (321)
Q Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  184 (321)
                      ++....+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|+++.|++++.|+.|++|
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw  208 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW  208 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence            98877778999999999999999999999999999999999999888899999999999999999999999999999999


Q ss_pred             eCCCCceeeeeccC--CCC---------------------CeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec-
Q 020798          185 DASTGHCMKTLIDD--ENP---------------------PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG-  240 (321)
Q Consensus       185 d~~~~~~~~~~~~~--~~~---------------------~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~-  240 (321)
                      |+++++....+...  +..                     .+..++|+|++++|++++.|+.|++||+++++.+..+.. 
T Consensus       209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  288 (420)
T 3vl1_A          209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK  288 (420)
T ss_dssp             ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred             ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence            99988877665431  222                     333455678999999999999999999999988777754 


Q ss_pred             cCCceeEEEeEEEecCCe-EEEEeCCCCeEEEEEcccce-EEEEecC-CCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          241 HTNSKYCISSTFSVTNGK-YIVSGSEDSCVYLWELQSRK-VVQKLEG-HTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      |.....++   ...+++. +|++|+.||.|++||+++++ .+..+.+ |..+|.++.+ |++.+|++++  .|+.|++|+
T Consensus       289 ~~~~v~~~---~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~--~d~~v~iw~  362 (420)
T 3vl1_A          289 FTCSCNSL---TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSG--FDTSIKLDI  362 (420)
T ss_dssp             TSSCEEEE---EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEET--TTEEEEEEE
T ss_pred             cCCCceeE---EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEec--CCccEEEEe
Confidence            44444333   3346777 99999999999999999874 3666666 6677888855 5788999998  458999999


Q ss_pred             ccc
Q 020798          318 QEK  320 (321)
Q Consensus       318 ~~~  320 (321)
                      ++.
T Consensus       363 ~~~  365 (420)
T 3vl1_A          363 ISD  365 (420)
T ss_dssp             ECC
T ss_pred             ccC
Confidence            754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-40  Score=282.20  Aligned_cols=282  Identities=22%  Similarity=0.402  Sum_probs=232.8

Q ss_pred             cCCccc--EEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccc-cccccEEEEEECCCCCEEEEEeCCCc
Q 020798           20 NGHLRA--ISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFT-GHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        20 ~~h~~~--v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      .+|...  +.+++|++  ..+++++.|+.|++|++...        .....+. .|...|.+++|+|++++|++|+.||.
T Consensus        88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~--------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  157 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSG--------SVSALAETDESTYVASVKWSHDGSFLSVGLGNGL  157 (401)
T ss_dssp             TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTC--------CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCC--------cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCe
Confidence            466655  44466664  56788889999999987542        1222333 37889999999999999999999999


Q ss_pred             EEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC-CCEEEEEEeCCCCCeeEEEEccCCCEEEEE
Q 020798           97 IRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK-TGKCLKVLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      |++||+.+++.+..+.+|...+.+++|+  ++.|++++.||.|++||++ .......+..|...|.+++|+|++..|+++
T Consensus       158 i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  235 (401)
T 4aez_A          158 VDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG  235 (401)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEE
Confidence            9999999999889999999999999994  5799999999999999998 566777888999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCC-EEEEEe--cCCeEEEEeCCCCcEEEEEeccCCceeEEEeEE
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK-FILVGT--LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF  252 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  252 (321)
                      +.|+.|++||+++++....+. .+...+..++|+|++. ++++++  .|+.|++||+.+++.+..+..+ ..   +....
T Consensus       236 ~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-~~---v~~~~  310 (401)
T 4aez_A          236 GNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQ---VTSLI  310 (401)
T ss_dssp             ETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS-SC---EEEEE
T ss_pred             eCCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC-Cc---EEEEE
Confidence            999999999999887766553 4566789999999765 455544  6999999999999988888643 33   33344


Q ss_pred             EecCCeEEEE--eCCCCeEEEEEcccceEE--EEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          253 SVTNGKYIVS--GSEDSCVYLWELQSRKVV--QKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       253 ~~~~~~~l~~--~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ..+++.++++  |+.||.|++||+.+++..  ..+.+|..+|.+++|+|++.+|++++  .|+.|++|+.+.
T Consensus       311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~--~dg~i~iw~~~~  380 (401)
T 4aez_A          311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA--SDENLKFWRVYD  380 (401)
T ss_dssp             ECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEEC--TTSEEEEEECCC
T ss_pred             ECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEECCC
Confidence            4578888888  668999999999986544  44678999999999999999999998  458999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.9e-40  Score=283.50  Aligned_cols=278  Identities=24%  Similarity=0.430  Sum_probs=228.3

Q ss_pred             EEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 020798           26 ISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA  105 (321)
Q Consensus        26 v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  105 (321)
                      ++.|+||++ ++||+|. |+.|++|+.....      ...+..+.+|...|++++|+|+|++|++|+.||.|++||+.++
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~  179 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGD------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ  179 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCC------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCC------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC
Confidence            567999975 5787775 9999999875421      1122344578889999999999999999999999999999999


Q ss_pred             ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 020798          106 TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW  184 (321)
Q Consensus       106 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  184 (321)
                      +.+..+.+|...+.++.++  +..|++++.|+.+++||.... ..+..+..|...+..+.++|++..+++++.|+.+++|
T Consensus       180 ~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~  257 (420)
T 4gga_A          180 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW  257 (420)
T ss_dssp             EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence            9999999999999988775  679999999999999998764 4566788999999999999999999999999999999


Q ss_pred             eCCCCcee---eeeccCCCCCeEEEEEccCCC-EEEEE--ecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe
Q 020798          185 DASTGHCM---KTLIDDENPPVSFVKFSPNGK-FILVG--TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK  258 (321)
Q Consensus       185 d~~~~~~~---~~~~~~~~~~~~~~~~~~~g~-~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (321)
                      |..+++..   ......+...+..++|+|.+. .++++  +.|+.|++||+.+++.+..+..+.. .  ....+. +++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~-v--~~~~~~-~~~~  333 (420)
T 4gga_A          258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V--CSILWS-PHYK  333 (420)
T ss_dssp             ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC-E--EEEEEE-TTTT
T ss_pred             eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc-e--eeeeec-CCCC
Confidence            99876432   122345566799999999654 44443  4799999999999999888876543 2  233344 5566


Q ss_pred             EEEEe--CCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          259 YIVSG--SEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       259 ~l~~~--~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .++++  +.|+.|+|||+.+++++..+.+|.++|++++|+|++.+|||||.  |++|+|||+.
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~--D~tvriWdv~  394 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA--DETLRLWRCF  394 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET--TTEEEEECCS
T ss_pred             eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec--CCeEEEEECC
Confidence            55543  47999999999999999999999999999999999999999994  5899999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.9e-41  Score=281.09  Aligned_cols=297  Identities=16%  Similarity=0.245  Sum_probs=222.9

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC--CCCEEEEEe
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS--DSRFLVSAS   92 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~l~~~~   92 (321)
                      +.+.+.+|.+.|++++|+|++++|++|+.|+.|++|++....    ........+.+|...|.+++|+|  ++++|++++
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~   78 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT----SNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS   78 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS----CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC----CcceecceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence            345678999999999999999999999999999999986421    11234556778999999999999  699999999


Q ss_pred             CCCcEEEEecCCc---------ceeeeeecCcccEEEEEECCC--CCEEEEeeCCCcEEEEecCCCEEEEEEe-------
Q 020798           93 DDKTIRLWDVPTA---------TCLKTLIGHTNYVFCVNFNPQ--SNMIVSGAFDETVRIWDVKTGKCLKVLP-------  154 (321)
Q Consensus        93 ~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------  154 (321)
                      .|+.|++||+.++         +....+..|...+.+++|+|+  +++|++++.|+.|++||+++++.+..+.       
T Consensus        79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  158 (351)
T 3f3f_A           79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV  158 (351)
T ss_dssp             TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred             CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence            9999999999876         446677889999999999999  9999999999999999998765433221       


Q ss_pred             ------CCCCCeeEEEEccC---CCEEEEEeCCCeEEEEeCCCCcee-eeeccCCCCCeEEEEEccCC----CEEEEEec
Q 020798          155 ------AHSDPVTAVDFNRD---GTMIVTSSYDGLCRIWDASTGHCM-KTLIDDENPPVSFVKFSPNG----KFILVGTL  220 (321)
Q Consensus       155 ------~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~g----~~l~~~~~  220 (321)
                            .|...+.+++|+|+   +..+++++.++.+.+|+...+... ......+...+..++|+|++    ++|++++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence                  56778999999997   889999999999988887766542 22334567789999999998    89999999


Q ss_pred             CCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEE----EEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEec
Q 020798          221 DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYI----VSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASH  296 (321)
Q Consensus       221 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  296 (321)
                      |+.|++||++.+.............   ...........+    ..+.....+.+|+....+.+..+.+|..+|++++|+
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  315 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEESLTNS---NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN  315 (351)
T ss_dssp             TSCEEEEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred             CCeEEEEeCCCCcCccccCCcccce---eccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence            9999999998765433322211111   111111122222    233345566777777778889999999999999999


Q ss_pred             CCCceEEEEeecCCccEEEccccc
Q 020798          297 PTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       297 p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      |++++|++|+  .|+.|++|+.+.
T Consensus       316 ~~~~~l~s~~--~dg~v~iw~~~~  337 (351)
T 3f3f_A          316 LTGTILSSAG--DDGKVRLWKATY  337 (351)
T ss_dssp             SSSCCEEEEE--TTSCEEEEEECT
T ss_pred             CCCCEEEEec--CCCcEEEEecCc
Confidence            9999999998  458999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.9e-40  Score=286.41  Aligned_cols=283  Identities=25%  Similarity=0.506  Sum_probs=241.7

Q ss_pred             eeeeccCCcccE-EEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           15 LTQTLNGHLRAI-SSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        15 ~~~~~~~h~~~v-~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      ....+.+|...| .++.+  ++++|++|+.|+.|++|++..        ...+..+.+|...|.+++|+|++ +|++|+.
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~--------~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~  181 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN--------KKFLLQLSGHDGGVWALKYAHGG-ILVSGST  181 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT--------TEEEEEECCCSSCEEEEEECSTT-EEEEEET
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC--------CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeC
Confidence            456788998885 66655  578999999999999998753        23566788999999999999988 8999999


Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEEC--CCCCEEEEeeCCCcEEEEecCCCEE----------------------
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFN--PQSNMIVSGAFDETVRIWDVKTGKC----------------------  149 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~----------------------  149 (321)
                      ||.|++||+.+++....+.+|...|.+++++  +++.++++++.|+.|++||++++..                      
T Consensus       182 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (464)
T 3v7d_B          182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY  261 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred             CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence            9999999999999999999999999999998  5778999999999999999987642                      


Q ss_pred             -EEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 020798          150 -LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN  228 (321)
Q Consensus       150 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d  228 (321)
                       ...+..|...+.++  +++++.+++++.|+.|++||+++++.+..+. .+...+..++|+|+++++++++.|+.|++||
T Consensus       262 ~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd  338 (464)
T 3v7d_B          262 FVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWD  338 (464)
T ss_dssp             EEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             EEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence             34566777777766  5778999999999999999999988776653 4567799999999999999999999999999


Q ss_pred             CCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeec
Q 020798          229 YSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALD  308 (321)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d  308 (321)
                      +++++.+..+.+|...+.++..     ++.+|++|+.||.|++||+.+++...... |...+..++|+|++++|++|+  
T Consensus       339 ~~~~~~~~~~~~h~~~v~~~~~-----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--  410 (464)
T 3v7d_B          339 LENGELMYTLQGHTALVGLLRL-----SDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS--  410 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEE-----CSSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE--
T ss_pred             CCCCcEEEEEeCCCCcEEEEEE-----cCCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec--
Confidence            9999999999988877655432     36899999999999999999887665543 566788899999999999987  


Q ss_pred             CCccEEEccccc
Q 020798          309 NDRTVKIWTQEK  320 (321)
Q Consensus       309 ~~~~i~iw~~~~  320 (321)
                       |+.|++||.+.
T Consensus       411 -dg~i~iwd~~~  421 (464)
T 3v7d_B          411 -ENQFNIYNLRS  421 (464)
T ss_dssp             -TTEEEEEETTT
T ss_pred             -CCeEEEEECCC
Confidence             47999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-40  Score=277.64  Aligned_cols=259  Identities=26%  Similarity=0.450  Sum_probs=198.6

Q ss_pred             eeeeec-cC-CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           14 TLTQTL-NG-HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        14 ~~~~~~-~~-h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      ++...+ .+ |...|.+++|+|++++|++|+.|+.|++|++..... .......+..+.+|...|.+++|+|++++|++|
T Consensus        47 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~  125 (330)
T 2hes_X           47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC  125 (330)
T ss_dssp             EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSCEEEEE
T ss_pred             EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC-ccccceeEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence            344445 44 999999999999999999999999999998753211 011223456678999999999999999999999


Q ss_pred             eCCCcEEEEecCCc----ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC--EEEEEEeCCCCCeeEEEE
Q 020798           92 SDDKTIRLWDVPTA----TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG--KCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus        92 ~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~  165 (321)
                      +.|+.|++||+...    +++..+.+|...|.+++|+|++++|++++.|++|++||..++  +++..+..|...|.+++|
T Consensus       126 s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~  205 (330)
T 2hes_X          126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF  205 (330)
T ss_dssp             ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred             eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEe
Confidence            99999999999432    456677899999999999999999999999999999998876  567788899999999999


Q ss_pred             ccC--CCEEEEEeCCCeEEEEeCCCC--------ceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc--
Q 020798          166 NRD--GTMIVTSSYDGLCRIWDASTG--------HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK--  233 (321)
Q Consensus       166 ~~~--~~~l~~~~~dg~i~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~--  233 (321)
                      +|+  +..+++++.|++|++||++.+        .+...+...+...+..++|++++ +|++++.|+.|++||..+++  
T Consensus       206 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~  284 (330)
T 2hes_X          206 DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK  284 (330)
T ss_dssp             CCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE
T ss_pred             cCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE
Confidence            998  668999999999999998654        22223323366789999999765 78899999999999988764  


Q ss_pred             EEEEE-eccCC-ceeEEEeEEEec-CCeEEEEeCCCCeEEEEEccc
Q 020798          234 ILKTY-TGHTN-SKYCISSTFSVT-NGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       234 ~~~~~-~~~~~-~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      .+... .+|.. .+.++  .+.+. ++.+|++|+.||.|++||++.
T Consensus       285 ~~~~~~~~h~~~~v~~v--~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          285 VFAKRALCHGVYEINVV--KWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEESCTTTTSCEEEE--EEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEeccccccccceEEEE--EEecCCCceEEEEecCCCcEEEEEecc
Confidence            23333 44544 44333  23322 688999999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.7e-41  Score=286.04  Aligned_cols=271  Identities=27%  Similarity=0.485  Sum_probs=225.1

Q ss_pred             ccccccCCc--ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEE
Q 020798            4 DQSLESFRP--YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVF   81 (321)
Q Consensus         4 ~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~   81 (321)
                      |..++-|+.  .+....+.+|...|.+++|+|+|++|++|+.|+.+++|++....... ........+.+|.+.|.++.|
T Consensus        87 D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~gh~~~v~~~~~  165 (380)
T 3iz6_a           87 DGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD-GNMPVSRVLTGHKGYASSCQY  165 (380)
T ss_dssp             TSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC-CSSTTCCBCCCCSSCCCCCBC
T ss_pred             CCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc-CCccceeeccCCCcceEEEEE
Confidence            445555543  34567788999999999999999999999999999999986533211 122334567899999999999


Q ss_pred             CCCC-CEEEEEeCCCcEEEEecCCcceeeee-----ecCcccEEEEEECC-CCCEEEEeeCCCcEEEEecC-CCEEEEEE
Q 020798           82 SSDS-RFLVSASDDKTIRLWDVPTATCLKTL-----IGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVK-TGKCLKVL  153 (321)
Q Consensus        82 ~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~-~~~~~~~~  153 (321)
                      +|++ ..|++|+.|++|++||+.+++.+..+     .+|...+.+++++| ++++|++|+.|+.|++||++ .++.+..+
T Consensus       166 ~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~  245 (380)
T 3iz6_a          166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY  245 (380)
T ss_dssp             CSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE
T ss_pred             ecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence            9974 57999999999999999999877665     67899999999987 78899999999999999998 45677788


Q ss_pred             eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCC------CCCeEEEEEccCCCEEEEEecCCeEEEE
Q 020798          154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDE------NPPVSFVKFSPNGKFILVGTLDNTLRLW  227 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~l~~~~~d~~i~i~  227 (321)
                      ..|...|.+++|+|++..|++++.|++|++||+++++....+....      ...+..++|+|+|++|++|+.|+.|++|
T Consensus       246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw  325 (380)
T 3iz6_a          246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW  325 (380)
T ss_dssp             CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred             CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence            8999999999999999999999999999999999987766543221      2347899999999999999999999999


Q ss_pred             eCCCCcEEEEE----eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce
Q 020798          228 NYSTGKILKTY----TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK  278 (321)
Q Consensus       228 d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (321)
                      |+.+++.+..+    .+|...+.++.   ..+++.+|++|+.||.|++|++...+
T Consensus       326 d~~~~~~~~~~~~~~~~h~~~v~~l~---~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          326 DTLLAEMVLNLGTLQNSHEGRISCLG---LSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             ETTTCCEEEEECCSCSSCCCCCCEEE---ECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ECCCCceEEEEecccCCCCCceEEEE---ECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            99998888777    45666655543   35789999999999999999987543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4e-40  Score=276.08  Aligned_cols=250  Identities=21%  Similarity=0.426  Sum_probs=210.2

Q ss_pred             cccccccccc-cEEEEEECCCCCEEEEEeCCCcEEEEecCCcceee---eeecCcccEEEEEECCCCCEEEEeeCCCcEE
Q 020798           65 PLQKFTGHEQ-GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLK---TLIGHTNYVFCVNFNPQSNMIVSGAFDETVR  140 (321)
Q Consensus        65 ~~~~~~~h~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  140 (321)
                      .+..+.+|.. .|..++|+|+|++|++|+.|+.|++||+.++....   ...+|...|.+++|+|++++|++++.|+.++
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~   86 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC   86 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence            3456778887 89999999999999999999999999998775332   2358999999999999999999999999999


Q ss_pred             EEecCCC--EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCcee--eeeccCCCCCeEEEEEccCCCEEE
Q 020798          141 IWDVKTG--KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM--KTLIDDENPPVSFVKFSPNGKFIL  216 (321)
Q Consensus       141 ~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~  216 (321)
                      +||+..+  +++..+..|..+|.+++|+|++++|++++.|++|++||++.+...  ......+...+..++|+|++++|+
T Consensus        87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  166 (345)
T 3fm0_A           87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA  166 (345)
T ss_dssp             EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE
T ss_pred             EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEE
Confidence            9998876  456778899999999999999999999999999999999865432  233445677899999999999999


Q ss_pred             EEecCCeEEEEeCCCCc--EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc---------------eE
Q 020798          217 VGTLDNTLRLWNYSTGK--ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR---------------KV  279 (321)
Q Consensus       217 ~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---------------~~  279 (321)
                      +++.|+.|++||..+++  ....+.+|...+.++   .+.+++++|++|+.|++|++||....               +.
T Consensus       167 s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l---~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~  243 (345)
T 3fm0_A          167 SASYDDTVKLYREEEDDWVCCATLEGHESTVWSL---AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC  243 (345)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE---EECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred             EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEE---EECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence            99999999999998775  346777887765544   33578999999999999999997422               23


Q ss_pred             EEEecC-CCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          280 VQKLEG-HTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       280 ~~~~~~-h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +..+.+ |...|.+++|+|++..|++++.  |+.|++|+.+
T Consensus       244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~i~vw~~~  282 (345)
T 3fm0_A          244 ICTLSGFHSRTIYDIAWCQLTGALATACG--DDAIRVFQED  282 (345)
T ss_dssp             EEEECSSCSSCEEEEEECTTTCCEEEEET--TSCEEEEEEC
T ss_pred             eEEecCCCCCcEEEEEEecCCCEEEEEeC--CCeEEEEEeC
Confidence            445555 8889999999999999999984  5899999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.9e-40  Score=283.65  Aligned_cols=274  Identities=29%  Similarity=0.534  Sum_probs=236.8

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEE
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIR   98 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~   98 (321)
                      ..+|...|++++|  ++++|++|+.|+.|++|++..        ......+.+|...|.+++|  ++++|++|+.||.|+
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~--------~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~  196 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT--------LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVR  196 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS--------CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEE
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC--------CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEE
Confidence            3467788998887  799999999999999998753        2345677899999999999  788999999999999


Q ss_pred             EEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEE---EEEeCCCCCeeEEEEccCCCEEEEE
Q 020798           99 LWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCL---KVLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus        99 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      +||+.+++.+..+.+|...|.++++++  +.+++++.||.|++||+++++..   ..+..|...|.+++|  +++.++++
T Consensus       197 vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~  272 (435)
T 1p22_A          197 VWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA  272 (435)
T ss_dssp             EEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred             EEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEE
Confidence            999999999999999999999999974  59999999999999999877544   567789999999998  67899999


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEec
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVT  255 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (321)
                      +.||.|++||+++++.+..+. .+...+.++.+  +++++++++.|+.|++||+++++.+..+.+|...+.++..     
T Consensus       273 ~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-----  344 (435)
T 1p22_A          273 SGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-----  344 (435)
T ss_dssp             ETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-----
T ss_pred             eCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-----
Confidence            999999999999988777664 45567888877  5679999999999999999999999999988877665542     


Q ss_pred             CCeEEEEeCCCCeEEEEEcccce---------EEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          256 NGKYIVSGSEDSCVYLWELQSRK---------VVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ++.+|++|+.||.|++||+.+++         .+..+.+|..+|.+++|  ++.+|++|+  .||.|++||++.
T Consensus       345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s--~Dg~i~iwd~~~  414 (435)
T 1p22_A          345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS--HDDTILIWDFLN  414 (435)
T ss_dssp             CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECC--SSSEEEEEC---
T ss_pred             cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEe--CCCEEEEEECCC
Confidence            68899999999999999998776         78889999999999999  688999998  458999999854

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.4e-39  Score=269.78  Aligned_cols=245  Identities=27%  Similarity=0.498  Sum_probs=214.0

Q ss_pred             ccccccccccEEEEEECCCC-CEEEEEeCCCcEEEEecCCc-----ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcE
Q 020798           66 LQKFTGHEQGVSDLVFSSDS-RFLVSASDDKTIRLWDVPTA-----TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETV  139 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  139 (321)
                      ...+.+|.+.|.+++|+|++ ++|++|+.|++|++|++...     .++..+.+|...|.+++|+|++++|++++.|++|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            34678999999999999965 89999999999999998642     3456788999999999999999999999999999


Q ss_pred             EEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC------CC
Q 020798          140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN------GK  213 (321)
Q Consensus       140 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------g~  213 (321)
                      ++||+++++....+..|...|.+++|+|++..+++++.|++|++||++.. +...+ ..+...+..+.+.|.      +.
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~-~~h~~~v~~~~~~~~~~~~~~~~  167 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATL-LGHNDWVSQVRVVPNEKADDDSV  167 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEE-CCCSSCEEEEEECCC------CC
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEE-eccCCcEEEEEEccCCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999753 44443 345667899999985      44


Q ss_pred             EEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEE
Q 020798          214 FILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISV  293 (321)
Q Consensus       214 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  293 (321)
                      .+++++.|+.|++||+++.+....+.+|...+.++.   ..+++++|++|+.||.|++||+.+++.+..+..+ .+|.++
T Consensus       168 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~---~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~  243 (319)
T 3frx_A          168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT---ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSL  243 (319)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEE---ECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEE
T ss_pred             EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEE---EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEE
Confidence            899999999999999999999999988887765543   3578999999999999999999999988888754 689999


Q ss_pred             EecCCCceEEEEeecCCccEEEcccc
Q 020798          294 ASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       294 ~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +|+|++.+|++++.   ..|++|+.+
T Consensus       244 ~~sp~~~~la~~~~---~~i~v~~~~  266 (319)
T 3frx_A          244 AFSPNRYWLAAATA---TGIKVFSLD  266 (319)
T ss_dssp             EECSSSSEEEEEET---TEEEEEEET
T ss_pred             EEcCCCCEEEEEcC---CCcEEEEeC
Confidence            99999999998862   359999875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.2e-41  Score=283.17  Aligned_cols=275  Identities=18%  Similarity=0.228  Sum_probs=196.8

Q ss_pred             EEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC------CCcEEEEec
Q 020798           29 VKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD------DKTIRLWDV  102 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~------d~~i~iwd~  102 (321)
                      +.+.+++.++.+. .+.....|++.            ......|+..|.+++|+|||++|++|+.      |+.|++|+.
T Consensus        11 ~d~g~~~~~~~~~-g~~~~~~w~~p------------~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~   77 (357)
T 4g56_B           11 VDLGTENLYFQSN-GSSKGSAWGRP------------VTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD   77 (357)
T ss_dssp             ------------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS
T ss_pred             CCCCccceEEecC-CCccccccCCC------------CCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC
Confidence            3556666555443 35566777542            1223469999999999999999999997      778999998


Q ss_pred             CCcce----eeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE----EEeCCCCCeeEEEEccCCCEEEE
Q 020798          103 PTATC----LKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK----VLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus       103 ~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      .++..    .....+|...|.+++|+|++. +++++.||.|++||+.+++...    ....|...|++++|+|++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s  156 (357)
T 4g56_B           78 PEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVS  156 (357)
T ss_dssp             CC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEE
T ss_pred             CCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEE
Confidence            76543    233456888999999999875 5667889999999998876443    23478999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCC-EEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEE
Q 020798          175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK-FILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFS  253 (321)
Q Consensus       175 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  253 (321)
                      ++.|+.|++||+++++.+..+ ..+...+..++|+|++. ++++++.|+.|++||+++++.+..+..+..........+.
T Consensus       157 gs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~s  235 (357)
T 4g56_B          157 GGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWH  235 (357)
T ss_dssp             EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEEC
T ss_pred             EeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhh
Confidence            999999999999998877665 35667899999999875 7888999999999999998876655443322222333455


Q ss_pred             ecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCC-ceEEEEeecCCccEEEccccc
Q 020798          254 VTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE-NIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +.++.+|++|+.|+.|++||+++++.+..+.+|..+|++++|+|++ ++||+|+.  |++|+|||.+.
T Consensus       236 p~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~--D~~i~iwd~~~  301 (357)
T 4g56_B          236 PEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE--DCTVAVLDADF  301 (357)
T ss_dssp             TTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEET--TSCEEEECTTS
T ss_pred             hcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeC--CCEEEEEECCC
Confidence            4456789999999999999999999999999999999999999997 57899984  58999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.1e-40  Score=268.95  Aligned_cols=251  Identities=19%  Similarity=0.297  Sum_probs=205.0

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC--CCEEEEEeCC
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD--SRFLVSASDD   94 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~~~~~d   94 (321)
                      ..+.+|.+.|++++|+|+|++||+|+.|+.|++|++...      ....+..+.+|.+.|.+++|+++  +++|++|+.|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~------~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D   76 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS------CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC------CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence            457899999999999999999999999999999997531      12346678899999999999864  8999999999


Q ss_pred             CcEEEEecCCcc--eeeeeecCcccEEEEEECCC--CCEEEEeeCCCcEEEEecCCCE--EEEEEeCCCCCeeEEEEccC
Q 020798           95 KTIRLWDVPTAT--CLKTLIGHTNYVFCVNFNPQ--SNMIVSGAFDETVRIWDVKTGK--CLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        95 ~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~  168 (321)
                      ++|++||+.+++  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+..|...|.+++|+|+
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred             CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence            999999998764  45567789999999999997  7899999999999999998653  23456789999999999997


Q ss_pred             -------------CCEEEEEeCCCeEEEEeCCCCce---eeeeccCCCCCeEEEEEccCC---CEEEEEecCCeEEEEeC
Q 020798          169 -------------GTMIVTSSYDGLCRIWDASTGHC---MKTLIDDENPPVSFVKFSPNG---KFILVGTLDNTLRLWNY  229 (321)
Q Consensus       169 -------------~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~g---~~l~~~~~d~~i~i~d~  229 (321)
                                   ++.|++++.|++|++||++++..   ....+..|...|..++|+|++   ++|++++.|+.|++||+
T Consensus       157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~  236 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ  236 (297)
T ss_dssp             C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence                         46899999999999999976541   222334577789999999984   89999999999999998


Q ss_pred             CCCc--E-EEEE--eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          230 STGK--I-LKTY--TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       230 ~~~~--~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      .+..  . ...+  ..+...+.   ...+.+++++|++++.||.|++|+...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~---~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          237 DNEQGPWKKTLLKEEKFPDVLW---RASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEE---EEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CCCCCccceeeeecccCCCcEE---EEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            7643  1 2222  23333333   333457899999999999999999863

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.7e-39  Score=292.19  Aligned_cols=293  Identities=20%  Similarity=0.348  Sum_probs=235.4

Q ss_pred             cceeeeeccCCcc---cEEEEEECCC-CCEEEEecCCceEEEeeccccCCCCCCCCCccccc-c---cccccEEEEEECC
Q 020798           12 PYTLTQTLNGHLR---AISSVKFSHD-GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF-T---GHEQGVSDLVFSS   83 (321)
Q Consensus        12 ~~~~~~~~~~h~~---~v~~~~~s~~-g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~i~~~~~~~   83 (321)
                      +.+....+.+|..   .|++++|+|+ +++|++++.|+.+++|++..        ...+..+ .   .|...|.+++|+ 
T Consensus       192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~~~~~v~~~~~~-  262 (615)
T 1pgu_A          192 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS--------GEFLKYIEDDQEPVQGGIFALSWL-  262 (615)
T ss_dssp             TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT--------CCEEEECCBTTBCCCSCEEEEEES-
T ss_pred             CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC--------CCEeEEecccccccCCceEEEEEc-
Confidence            3456677889999   9999999999 99999999999999998753        2334455 4   799999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEecCCcceeeeeecC----cccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCC
Q 020798           84 DSRFLVSASDDKTIRLWDVPTATCLKTLIGH----TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP  159 (321)
Q Consensus        84 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  159 (321)
                      ++++|++++.|+.|++||+.+++....+..+    ...+.++.+. +++.+++++.|+.|++||+.+++.+..+..|..+
T Consensus       263 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~  341 (615)
T 1pgu_A          263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG  341 (615)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSC
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCC
Confidence            9999999999999999999999888777766    3667788875 8899999999999999999888777777666665


Q ss_pred             eeEEEEccC---------------------------------CCEEEEEeC-----------------------------
Q 020798          160 VTAVDFNRD---------------------------------GTMIVTSSY-----------------------------  177 (321)
Q Consensus       160 v~~~~~~~~---------------------------------~~~l~~~~~-----------------------------  177 (321)
                      |.+++| |+                                 +..+++++.                             
T Consensus       342 v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~  420 (615)
T 1pgu_A          342 ITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFT  420 (615)
T ss_dssp             EEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEE
T ss_pred             EEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCE
Confidence            555555 33                                 334444444                             


Q ss_pred             ---------------------------------------------CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCC
Q 020798          178 ---------------------------------------------DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNG  212 (321)
Q Consensus       178 ---------------------------------------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g  212 (321)
                                                                   ++.+++||+.+++........+...+..++|+|++
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  500 (615)
T 1pgu_A          421 AVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE  500 (615)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS
T ss_pred             EEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCC
Confidence                                                         44444444444332212233456679999999999


Q ss_pred             CEEEEEecCCeEEEEeCCCCcEEEEEec-cCCceeEEEeEEEec----------CCeEEEEeCCCCeEEEEEcccc-eEE
Q 020798          213 KFILVGTLDNTLRLWNYSTGKILKTYTG-HTNSKYCISSTFSVT----------NGKYIVSGSEDSCVYLWELQSR-KVV  280 (321)
Q Consensus       213 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~l~~~~~dg~i~vwd~~~~-~~~  280 (321)
                      ++|++++.|+.|++||+.+++.+..+.+ |...+.++   ...+          ++++|++++.||.|++||+.++ +.+
T Consensus       501 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~---~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  577 (615)
T 1pgu_A          501 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI---SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII  577 (615)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEE---EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCE
T ss_pred             CEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEE---EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceec
Confidence            9999999999999999999999888876 76665443   3346          8999999999999999999987 788


Q ss_pred             EEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccccC
Q 020798          281 QKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEKE  321 (321)
Q Consensus       281 ~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~~  321 (321)
                      ..+.+|..+|++++|+|++. |++++  .|+.|++|+++.|
T Consensus       578 ~~~~~h~~~v~~l~~s~~~~-l~s~~--~d~~v~iw~~~~~  615 (615)
T 1pgu_A          578 KALNAHKDGVNNLLWETPST-LVSSG--ADACIKRWNVVLE  615 (615)
T ss_dssp             EETTSSTTCEEEEEEEETTE-EEEEE--TTSCEEEEEEC--
T ss_pred             hhhhcCccceEEEEEcCCCC-eEEec--CCceEEEEeeecC
Confidence            88999999999999999999 99998  4589999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.6e-40  Score=276.54  Aligned_cols=300  Identities=15%  Similarity=0.252  Sum_probs=239.7

Q ss_pred             CCcceeeeeccCCcccEEEEEECCC---CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCC
Q 020798           10 FRPYTLTQTLNGHLRAISSVKFSHD---GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR   86 (321)
Q Consensus        10 ~~~~~~~~~~~~h~~~v~~~~~s~~---g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~   86 (321)
                      ..|....+.+.+|.+.|++++|+|+   |++|++|+.|+.|++|++...      .......+.+|...|.+++|+|+++
T Consensus        26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~   99 (368)
T 3mmy_A           26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS------GQTIPKAQQMHTGPVLDVCWSDDGS   99 (368)
T ss_dssp             SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT------SCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC------CceeEEEeccccCCEEEEEECcCCC
Confidence            4466677788999999999999999   699999999999999998631      1122356778999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEE--CCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEE
Q 020798           87 FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNF--NPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVD  164 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  164 (321)
                      +|++++.|+.|++||+.+++... +..|...|.+++|  +|++++|++++.|+.|++||+++++.+..+..+. .+.++.
T Consensus       100 ~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~  177 (368)
T 3mmy_A          100 KVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCAD  177 (368)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEE
Confidence            99999999999999999888655 5679999999999  8999999999999999999999998888877654 555666


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeee-eccCCCCCeEEEEEccCCCE----EEEEecCCeEEEEeCCCC---cEEE
Q 020798          165 FNRDGTMIVTSSYDGLCRIWDASTGHCMKT-LIDDENPPVSFVKFSPNGKF----ILVGTLDNTLRLWNYSTG---KILK  236 (321)
Q Consensus       165 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~----l~~~~~d~~i~i~d~~~~---~~~~  236 (321)
                      +.  ...+++++.++.+++|+++....... ...........+.+.++...    +++++.|+.|++||+...   +.+.
T Consensus       178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  255 (368)
T 3mmy_A          178 VI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF  255 (368)
T ss_dssp             EE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred             ec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence            55  45788899999999999987543322 22233345566666665544    999999999999999876   4566


Q ss_pred             EEeccCCce---------eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEee
Q 020798          237 TYTGHTNSK---------YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGAL  307 (321)
Q Consensus       237 ~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  307 (321)
                      .+..|....         ..+......+++++|++|+.||.|++||+.+++.+..+.+|..+|.+++|+|++++|++|+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~  335 (368)
T 3mmy_A          256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS  335 (368)
T ss_dssp             EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred             eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence            666654310         02334445578999999999999999999999999999999999999999999999999985


Q ss_pred             cC-CccEEEcccc
Q 020798          308 DN-DRTVKIWTQE  319 (321)
Q Consensus       308 d~-~~~i~iw~~~  319 (321)
                      |+ ...+.+|+.+
T Consensus       336 d~~~~~~~~~~~~  348 (368)
T 3mmy_A          336 YDWSKGHEFYNPQ  348 (368)
T ss_dssp             CCSTTCGGGCCTT
T ss_pred             ccccccccccCCC
Confidence            42 1234444443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.6e-39  Score=266.32  Aligned_cols=278  Identities=23%  Similarity=0.414  Sum_probs=223.1

Q ss_pred             EEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 020798           26 ISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA  105 (321)
Q Consensus        26 v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  105 (321)
                      .++|+||+++ +||+|. |++|++||.....      ......+.+|...|.+++|+|++++|++|+.|+.|++||++++
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGD------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ   99 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCC------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCC------EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc
Confidence            4679999986 777764 9999999875421      1122334578889999999999999999999999999999999


Q ss_pred             ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 020798          106 TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIW  184 (321)
Q Consensus       106 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  184 (321)
                      +++..+.+|...+.++.+  ++..+++++.++.+++|+.... ..+..+..|...+..+.+.++++.+++++.|+.|++|
T Consensus       100 ~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  177 (318)
T 4ggc_A          100 KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW  177 (318)
T ss_dssp             EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence            999999999988876655  4678999999999999998765 4556778899999999999999999999999999999


Q ss_pred             eCCCCceee---eeccCCCCCeEEEEEccCCCEE---EEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe
Q 020798          185 DASTGHCMK---TLIDDENPPVSFVKFSPNGKFI---LVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK  258 (321)
Q Consensus       185 d~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~l---~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (321)
                      |+++++...   .....+...+..+.++|++..+   ++++.++.|++||.............. ...  ...+. +++.
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~-~v~--~~~~~-~~~~  253 (318)
T 4ggc_A          178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVC--SILWS-PHYK  253 (318)
T ss_dssp             ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS-CEE--EEEEE-TTTT
T ss_pred             ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee-eee--eeeec-cccc
Confidence            998765322   2223445678889999876543   345678999999999887776654332 222  22333 4555


Q ss_pred             EEEE--eCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          259 YIVS--GSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       259 ~l~~--~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .+++  |+.|+.|++||+++++++..+.+|.++|++++|+|++++|||||.  |++|+|||+.
T Consensus       254 ~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~--D~~v~iWd~~  314 (318)
T 4ggc_A          254 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA--DETLRLWRCF  314 (318)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET--TTEEEEECCS
T ss_pred             ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec--CCeEEEEECC
Confidence            4443  458999999999999999999999999999999999999999994  5899999974

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.8e-39  Score=277.80  Aligned_cols=283  Identities=30%  Similarity=0.594  Sum_probs=244.6

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      .+....+.+|...|.+++|+  +++|++|+.|+.|++|++..        ...+..+.+|...|.++.|+  ++.+++|+
T Consensus       149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~--------~~~~~~~~~h~~~v~~~~~~--~~~l~s~s  216 (445)
T 2ovr_B          149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET--------GECIHTLYGHTSTVRCMHLH--EKRVVSGS  216 (445)
T ss_dssp             CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--------TEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc--------CcEEEEECCCCCcEEEEEec--CCEEEEEe
Confidence            44667789999999999997  67999999999999998753        23456778899999999995  56899999


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      .|+.|++||+.+++....+.+|...+.++++  +++.+++++.|+.|++||+++++.+..+..|...+.+++|  ++..+
T Consensus       217 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l  292 (445)
T 2ovr_B          217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHV  292 (445)
T ss_dssp             TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEE
T ss_pred             CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEE
Confidence            9999999999999999999999999999999  6789999999999999999999999999999999999999  78899


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec---cCCceeEEE
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG---HTNSKYCIS  249 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~  249 (321)
                      ++++.|+.|++||+++++....+. .+...+..+.+  +++++++++.|+.|++||+++++.+..+..   |...+.++.
T Consensus       293 ~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  369 (445)
T 2ovr_B          293 VSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ  369 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEc-CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE
Confidence            999999999999999988776654 44555666555  577999999999999999999999999876   444444332


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEe-----cCCCCCeEEEEecCCCceEEEEeecCCcc----EEEccccc
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL-----EGHTDPVISVASHPTENIIASGALDNDRT----VKIWTQEK  320 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~s~~~d~~~~----i~iw~~~~  320 (321)
                         .  ++.+|++|+.||.|++||+.+++.+..+     .+|..+|++++|+|++.++|+|+.|  |.    |.+||.+.
T Consensus       370 ---~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~d--g~~~~~l~v~df~~  442 (445)
T 2ovr_B          370 ---F--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN--GTEETKLLVLDFDV  442 (445)
T ss_dssp             ---E--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS--SSSCCEEEEEECCC
T ss_pred             ---E--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccC--CCCccEEEEEECCC
Confidence               2  5789999999999999999999988877     4688899999999999999999855  55    99999875


Q ss_pred             C
Q 020798          321 E  321 (321)
Q Consensus       321 ~  321 (321)
                      +
T Consensus       443 ~  443 (445)
T 2ovr_B          443 D  443 (445)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2e-39  Score=276.57  Aligned_cols=242  Identities=34%  Similarity=0.611  Sum_probs=207.2

Q ss_pred             cccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCc------------------ccEEEEEECCCCCEEEE
Q 020798           71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHT------------------NYVFCVNFNPQSNMIVS  132 (321)
Q Consensus        71 ~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~  132 (321)
                      +|...|.+++|+|+|++|++|+ ++.+++|++.+++.+..+..|.                  ..|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999876 6899999999988776665443                  24899999999999999


Q ss_pred             eeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc-C
Q 020798          133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP-N  211 (321)
Q Consensus       133 ~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~  211 (321)
                      ++.|+.|++||+.+++....+..|...|.+++|+|+++.|++++.|++|++||++++++...+.  ....+..++++| +
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~  218 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAVSPGD  218 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSTT
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEEEEEECCC
Confidence            9999999999999999999999999999999999999999999999999999999988766553  345688999999 8


Q ss_pred             CCEEEEEecCCeEEEEeCCCCcEEEEE-------eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc-------
Q 020798          212 GKFILVGTLDNTLRLWNYSTGKILKTY-------TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR-------  277 (321)
Q Consensus       212 g~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------  277 (321)
                      +++|++++.|+.|++||+++++.+..+       .+|...+.+   ....+++++|++|+.||.|++||+++.       
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~---v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~  295 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS---VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK  295 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE---EEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE---EEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence            999999999999999999999887776       345555443   334578999999999999999999753       


Q ss_pred             -----eEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          278 -----KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       278 -----~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                           .....+.+|...|.+++|+|++.+|++|+.  |+.|++||.+.
T Consensus       296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~--D~~v~iwd~~~  341 (393)
T 1erj_A          296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK--DRGVLFWDKKS  341 (393)
T ss_dssp             -----CEEEEEECCSSCEEEEEECGGGCEEEEEET--TSEEEEEETTT
T ss_pred             CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC--CCeEEEEECCC
Confidence                 345567889999999999999999999994  58999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-41  Score=295.29  Aligned_cols=296  Identities=12%  Similarity=0.101  Sum_probs=216.3

Q ss_pred             eeccCCcccEEEEEECCC------CCEEEEecCCceEEEeeccccCCCC---CCCCCcccccccccccEEEEEECCCCCE
Q 020798           17 QTLNGHLRAISSVKFSHD------GRLLASSSADKTLLTYSLSSISNSD---STPPSPLQKFTGHEQGVSDLVFSSDSRF   87 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~------g~~l~~~~~d~~v~~~~~~~~~~~~---~~~~~~~~~~~~h~~~i~~~~~~~~~~~   87 (321)
                      ..+.+|.+.|.+++|+|+      +.+||+++.|+.|++|++.......   .....+...+.+|...|.+++|++++ .
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence            345678899999999997      5799999999999999986532110   01123445678899999999999864 7


Q ss_pred             EEEEeCCCcEEEEecCCcc-eeeeeecCcccEEEE--EECCCC-CEEEEeeCCCcEEEEecCCCEEEEEEeCCCC--Cee
Q 020798           88 LVSASDDKTIRLWDVPTAT-CLKTLIGHTNYVFCV--NFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLPAHSD--PVT  161 (321)
Q Consensus        88 l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~  161 (321)
                      |++|+.||+|++||+.++. +...+.+|...|.++  .++|++ .+|++++.|++|++||++++++...+..|..  .+.
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence            9999999999999998764 345678999999999  578887 8999999999999999998776655555543  578


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc
Q 020798          162 AVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH  241 (321)
Q Consensus       162 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  241 (321)
                      +++|+|++..+++++.|++|++||++++.+...+. .+...|..++|+|+|++|++|+.|++|++||+..+ .+..+...
T Consensus       360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~  437 (524)
T 2j04_B          360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNS  437 (524)
T ss_dssp             CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC---
T ss_pred             ceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccC
Confidence            99999999999999999999999999887766554 46778999999999999999999999999998653 21111100


Q ss_pred             C--CceeEE-EeEEEecCCeEEEEeCCCCeEEEEEcc-cceEEEEecCCCCCeEEEEecCCCc---eEEEEeecCCccEE
Q 020798          242 T--NSKYCI-SSTFSVTNGKYIVSGSEDSCVYLWELQ-SRKVVQKLEGHTDPVISVASHPTEN---IIASGALDNDRTVK  314 (321)
Q Consensus       242 ~--~~~~~~-~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~p~~~---~l~s~~~d~~~~i~  314 (321)
                      .  .....+ ...+ .+++..+. ...+  +++|+.. ++..+..+.+|..+|.+|+|+|++.   ++|+|+  .+|.|+
T Consensus       438 ~~~~~~~~v~~v~~-sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~--~~g~vr  511 (524)
T 2j04_B          438 SATQKSLRLWKWDY-SIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN--SAGLLT  511 (524)
T ss_dssp             ---CCCCEEEECBC-CSSSCEEE-ECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC--TTSEEE
T ss_pred             ccceeeeEEEEecc-CCCCCeEE-ccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc--cCceEE
Confidence            0  000112 2222 35565432 2222  2333332 4566778899999999999999965   888887  469999


Q ss_pred             EcccccC
Q 020798          315 IWTQEKE  321 (321)
Q Consensus       315 iw~~~~~  321 (321)
                      ||+++.|
T Consensus       512 lw~l~~~  518 (524)
T 2j04_B          512 LEYLSLE  518 (524)
T ss_dssp             EEECSCC
T ss_pred             EEEcccc
Confidence            9998765

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.8e-39  Score=278.74  Aligned_cols=279  Identities=32%  Similarity=0.652  Sum_probs=241.1

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      ..+.+.+|.+.|.. +++++|++|++|+.|+.|++|++..        ...+..+.+|...|.++.|+  ++++++|+.|
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~--------~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d  178 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT--------GKCLRTLVGHTGGVWSSQMR--DNIIISGSTD  178 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT--------CCEEEECCCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCC--------CcEEEEEcCCCCCEEEEEec--CCEEEEEeCC
Confidence            34567899887533 3556799999999999999998753        23566778999999999997  5699999999


Q ss_pred             CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEE
Q 020798           95 KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      |.|++||+.+++....+.+|...|.++.++  ++.+++++.||.|++||+++++....+..|..++.+++|  ++..+++
T Consensus       179 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~  254 (445)
T 2ovr_B          179 RTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVS  254 (445)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEE
T ss_pred             CeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEE
Confidence            999999999999999999999999999995  568999999999999999999999999999999999998  6788999


Q ss_pred             EeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEe
Q 020798          175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV  254 (321)
Q Consensus       175 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (321)
                      ++.|+.|++||+++++....+. .+...+..+.+  ++.++++++.|+.|++||+++++.+..+.+|.....++.     
T Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~-----  326 (445)
T 2ovr_B          255 GAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME-----  326 (445)
T ss_dssp             EETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE-----
T ss_pred             EcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE-----
Confidence            9999999999999888776654 45567888888  888999999999999999999999999988876654432     


Q ss_pred             cCCeEEEEeCCCCeEEEEEcccceEEEEecC---CCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          255 TNGKYIVSGSEDSCVYLWELQSRKVVQKLEG---HTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .++.++++|+.||.|++||+++++.+..+.+   |..+|.+++|+  +++|++|+  .||.|++||.+.
T Consensus       327 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--~dg~v~iwd~~~  391 (445)
T 2ovr_B          327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS--DDGTVKLWDLKT  391 (445)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE--TTSEEEEEETTT
T ss_pred             EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEe--CCCeEEEEECCC
Confidence            2477999999999999999999999888876   88899999996  57999998  458999999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.6e-41  Score=277.10  Aligned_cols=247  Identities=23%  Similarity=0.346  Sum_probs=200.1

Q ss_pred             ccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc--eeeeeecCcccEEEEEECC--CCCEEEEeeCCCcEEEEe
Q 020798           68 KFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTLIGHTNYVFCVNFNP--QSNMIVSGAFDETVRIWD  143 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd  143 (321)
                      .+.+|.+.|.+++|+|+|++|++|+.|++|++||+.++.  .+..+.+|...|.+++|+|  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456899999999999999999999999999999998764  4567889999999999986  388999999999999999


Q ss_pred             cCCCE--EEEEEeCCCCCeeEEEEccC--CCEEEEEeCCCeEEEEeCCCCce--eeeeccCCCCCeEEEEEccC------
Q 020798          144 VKTGK--CLKVLPAHSDPVTAVDFNRD--GTMIVTSSYDGLCRIWDASTGHC--MKTLIDDENPPVSFVKFSPN------  211 (321)
Q Consensus       144 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~------  211 (321)
                      +++++  ....+..|...|.+++|+|+  +.+|++++.|+.|++||++.+..  .......+...+..++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            98763  55667789999999999998  77999999999999999986532  12333455667888999987      


Q ss_pred             -----------CCEEEEEecCCeEEEEeCCCC---cEEEEEeccCCceeEEEeEEEecCC----eEEEEeCCCCeEEEEE
Q 020798          212 -----------GKFILVGTLDNTLRLWNYSTG---KILKTYTGHTNSKYCISSTFSVTNG----KYIVSGSEDSCVYLWE  273 (321)
Q Consensus       212 -----------g~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~vwd  273 (321)
                                 +++|++++.|+.|++||++..   +.+..+.+|...+.++.  | .+++    .+|++|+.||+|++|+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~--~-sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA--W-APSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE--C-CCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE--e-cCCCCCCCceEEEEcCCCeEEEEE
Confidence                       468999999999999999755   45666777877655543  2 3554    7899999999999999


Q ss_pred             cccc---e-EEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          274 LQSR---K-VVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       274 ~~~~---~-~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +...   + ....+..|..+|.+++|+|++++||+|+.  |+.|+||+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~--D~~v~lw~~~  292 (316)
T 3bg1_A          245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG--DNKVTLWKES  292 (316)
T ss_dssp             CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES--SSCEEEEEEC
T ss_pred             ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC--CCeEEEEEEC
Confidence            9762   1 22345668899999999999999999984  5899999975

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=9.1e-40  Score=279.65  Aligned_cols=285  Identities=21%  Similarity=0.353  Sum_probs=230.1

Q ss_pred             cEEEEEECCCCCEE-EEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC-CCCEEEEEeCCCcEEEEec
Q 020798           25 AISSVKFSHDGRLL-ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS-DSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        25 ~v~~~~~s~~g~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~  102 (321)
                      ....++++|+...+ ++++.||.|.+|++.....    ....+..+.+|...|.+++|+| ++++|++|+.||.|++||+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~----~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~  111 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR----VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI  111 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE----CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC----CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence            34458899887654 4578999999999854211    1234456789999999999999 8999999999999999999


Q ss_pred             CCc-------ceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEEE--eCCCCCeeEEEEccCCCEE
Q 020798          103 PTA-------TCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVL--PAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus       103 ~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l  172 (321)
                      .++       +.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++....+  ..|...|.+++|+|+++.|
T Consensus       112 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  191 (402)
T 2aq5_A          112 PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI  191 (402)
T ss_dssp             CTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred             cCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence            887       5567788999999999999998 69999999999999999999998888  7899999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccCC-CCCeEEEEEccCCCEEEEE---ecCCeEEEEeCCCCcE-EEEEe-ccCCcee
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDDE-NPPVSFVKFSPNGKFILVG---TLDNTLRLWNYSTGKI-LKTYT-GHTNSKY  246 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~---~~d~~i~i~d~~~~~~-~~~~~-~~~~~~~  246 (321)
                      ++++.|+.|++||+++++....+...+ ...+..+.|+|++++|+++   +.|+.|++||+++++. +.... .+.....
T Consensus       192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  271 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL  271 (402)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred             EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence            999999999999999988777763333 3347889999999999998   6899999999988654 33332 2333332


Q ss_pred             EEEeEEEecCCeEEE-EeCCCCeEEEEEcccceE-EEEecC--CCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          247 CISSTFSVTNGKYIV-SGSEDSCVYLWELQSRKV-VQKLEG--HTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       247 ~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~-~~~~~~--h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .   ....+++++|+ +|+.||.|++||+.+++. +..+..  |..+|.+++|+|++.+++++    ++.+++|++..
T Consensus       272 ~---~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~----~~~~~~~~l~~  342 (402)
T 2aq5_A          272 L---PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK----CEIARFYKLHE  342 (402)
T ss_dssp             E---EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG----TEEEEEEEEET
T ss_pred             E---EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec----ceeEEEEEcCC
Confidence            2   33346777775 677899999999998763 444433  56899999999999998863    45899999753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.7e-39  Score=268.93  Aligned_cols=246  Identities=25%  Similarity=0.459  Sum_probs=205.2

Q ss_pred             ccccccccccEEEEEE-----CC-CCCEEEEEeCCCcEEEEecCCc-------ceeeeeecCcccEEEEEECCCCCEEEE
Q 020798           66 LQKFTGHEQGVSDLVF-----SS-DSRFLVSASDDKTIRLWDVPTA-------TCLKTLIGHTNYVFCVNFNPQSNMIVS  132 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~-----~~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~  132 (321)
                      ...+.+|.+.|.+++|     ++ ++++|++|+.|++|++||+...       .....+.+|...|.+++|+|++.++++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence            4567899999999999     76 8999999999999999998753       345667899999999999999999999


Q ss_pred             eeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee-ccCCCCCeEEEEEccC
Q 020798          133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL-IDDENPPVSFVKFSPN  211 (321)
Q Consensus       133 ~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~  211 (321)
                      ++.|++|++||+++++....+..|...|.+++|+|+++.+++++.|+.|++||+......... ...+...+.+++|+|+
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPI  173 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCC
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccc
Confidence            999999999999999999999999999999999999999999999999999999743222111 1245567899999998


Q ss_pred             C----------CEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc-eEE
Q 020798          212 G----------KFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR-KVV  280 (321)
Q Consensus       212 g----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~  280 (321)
                      +          .++++++.|+.|++|| ...+....+.+|...+.++   ...+++++|++|+.||.|++||+... ...
T Consensus       174 ~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~---~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~  249 (343)
T 2xzm_R          174 MKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHL---SISPNGKYIATGGKDKKLLIWDILNLTYPQ  249 (343)
T ss_dssp             CCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEE---EECTTSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred             cccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEE---EECCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence            7          7899999999999999 4566777788887765544   34578999999999999999999543 333


Q ss_pred             EEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          281 QKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       281 ~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ..+ .+...|.+++|+|++.++++|+   |+.|++|+.+
T Consensus       250 ~~~-~~~~~v~~v~~sp~~~~la~~~---d~~v~iw~~~  284 (343)
T 2xzm_R          250 REF-DAGSTINQIAFNPKLQWVAVGT---DQGVKIFNLM  284 (343)
T ss_dssp             EEE-ECSSCEEEEEECSSSCEEEEEE---SSCEEEEESS
T ss_pred             eee-cCCCcEEEEEECCCCCEEEEEC---CCCEEEEEeC
Confidence            333 2456799999999999887664   4679999975

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.7e-40  Score=273.82  Aligned_cols=250  Identities=17%  Similarity=0.262  Sum_probs=197.6

Q ss_pred             eeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC--CCCEEEEEeC
Q 020798           16 TQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS--DSRFLVSASD   93 (321)
Q Consensus        16 ~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~l~~~~~   93 (321)
                      ...+.+|.+.|++++|+|+|++||+|+.|+.|++|++....      ...+..+.+|...|.+++|++  ++++|++|+.
T Consensus         6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~   79 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG------QILIADLRGHEGPVWQVAWAHPMYGNILASCSY   79 (316)
T ss_dssp             --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE------EEEEEEEECCSSCEEEEEECCGGGSSCEEEEET
T ss_pred             eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC
Confidence            44568999999999999999999999999999999985311      123456789999999999986  4899999999


Q ss_pred             CCcEEEEecCCcc--eeeeeecCcccEEEEEECCC--CCEEEEeeCCCcEEEEecCCCE---EEEEEeCCCCCeeEEEEc
Q 020798           94 DKTIRLWDVPTAT--CLKTLIGHTNYVFCVNFNPQ--SNMIVSGAFDETVRIWDVKTGK---CLKVLPAHSDPVTAVDFN  166 (321)
Q Consensus        94 d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~~  166 (321)
                      |++|++||+++++  ....+.+|...|.+++|+|+  +.+|++++.|+.|++||++.+.   ....+..|...+.+++|+
T Consensus        80 D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (316)
T 3bg1_A           80 DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA  159 (316)
T ss_dssp             TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred             CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEc
Confidence            9999999998763  45567789999999999998  7899999999999999998753   234456788899999999


Q ss_pred             cC-----------------CCEEEEEeCCCeEEEEeCCCCc---eeeeeccCCCCCeEEEEEccCC----CEEEEEecCC
Q 020798          167 RD-----------------GTMIVTSSYDGLCRIWDASTGH---CMKTLIDDENPPVSFVKFSPNG----KFILVGTLDN  222 (321)
Q Consensus       167 ~~-----------------~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~g----~~l~~~~~d~  222 (321)
                      |+                 +..|++++.|+.|++||++...   ... .+..+...|..++|+|++    ++|++++.|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~-~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~  238 (316)
T 3bg1_A          160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQ-KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG  238 (316)
T ss_dssp             CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEE-CCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred             cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceee-ecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence            97                 3689999999999999997542   233 334567789999999986    8899999999


Q ss_pred             eEEEEeCCCCc----EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          223 TLRLWNYSTGK----ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       223 ~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      +|++||+.+..    ....+..|...+..+   .+.+++++|++++.||.|++|+..
T Consensus       239 ~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v---~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          239 RVFIWTCDDASSNTWSPKLLHKFNDVVWHV---SWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEEECSSTTCCCCBCCEEEECSSCEEEE---EECTTTCCEEEEESSSCEEEEEEC
T ss_pred             eEEEEEccCccccchhhhhhhcCCCcEEEE---EEcCCCCEEEEEcCCCeEEEEEEC
Confidence            99999987621    122334455554433   335789999999999999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-39  Score=300.59  Aligned_cols=214  Identities=14%  Similarity=0.241  Sum_probs=178.9

Q ss_pred             cCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEE
Q 020798            9 SFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL   88 (321)
Q Consensus         9 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l   88 (321)
                      .|.++...+  .||...|++++|+|++++||+|+.|+.|++|+....        .... ...|...|.+++|+| +++|
T Consensus         5 ~~~~~~~~~--~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~--------~~~~-~~~~~~~V~~l~fsp-g~~L   72 (902)
T 2oaj_A            5 IFSLAETNK--YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV--------EVVI-KLEDRSAIKEMRFVK-GIYL   72 (902)
T ss_dssp             TEEEEEEEE--EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC--------EEEE-ECSSCCCEEEEEEET-TTEE
T ss_pred             eeeeccccc--cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc--------EEEE-EcCCCCCEEEEEEcC-CCEE
Confidence            344444333  489999999999999999999999999999976431        1112 234778999999999 8899


Q ss_pred             EEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEE-----------EEEeCCC
Q 020798           89 VSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCL-----------KVLPAHS  157 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-----------~~~~~~~  157 (321)
                      ++++.|+.|++||+.+++++..+. |...|.+++|+|++++|++|+.||.|++||+++++..           ..+..|.
T Consensus        73 ~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~  151 (902)
T 2oaj_A           73 VVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL  151 (902)
T ss_dssp             EEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred             EEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence            999999999999999998877775 6678999999999999999999999999999988754           2235688


Q ss_pred             CCeeEEEEccC-CCEEEEEeCCCeEEEEeCCCCceeeeeccC-----------------CCCCeEEEEEccCCCEEEEEe
Q 020798          158 DPVTAVDFNRD-GTMIVTSSYDGLCRIWDASTGHCMKTLIDD-----------------ENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       158 ~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      .+|.+++|+|+ +..+++++.|+.+ +||+++++....+...                 +...+..++|+|+|++|++++
T Consensus       152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs  230 (902)
T 2oaj_A          152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH  230 (902)
T ss_dssp             CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred             CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence            99999999996 4688999999999 9999998776655322                 135699999999999999999


Q ss_pred             cCCeEEEEeCCCCcEEE
Q 020798          220 LDNTLRLWNYSTGKILK  236 (321)
Q Consensus       220 ~d~~i~i~d~~~~~~~~  236 (321)
                      .|+.|++||+++++.+.
T Consensus       231 ~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          231 EDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             TTCCEEEEETTTCCEEE
T ss_pred             CCCeEEEEECCCCcEEE
Confidence            99999999998887665

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.8e-38  Score=274.49  Aligned_cols=291  Identities=26%  Similarity=0.465  Sum_probs=235.9

Q ss_pred             ccccccCC--cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEE
Q 020798            4 DQSLESFR--PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVF   81 (321)
Q Consensus         4 ~~~~~~~~--~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~   81 (321)
                      |..+..++  ..+....+.+|.+.|++++|+|++ +|++|+.|+.|++|++..        ...+..+.+|...|.+++|
T Consensus       141 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~--------~~~~~~~~~h~~~v~~l~~  211 (464)
T 3v7d_B          141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK--------GCCTHVFEGHNSTVRCLDI  211 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT--------TEEEEEECCCSSCEEEEEE
T ss_pred             CCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--------CcEEEEECCCCCccEEEEE
Confidence            33444333  345677788999999999999988 999999999999998753        2346677889999999999


Q ss_pred             C--CCCCEEEEEeCCCcEEEEecCCcce-----------------------eeeeecCcccEEEEEECCCCCEEEEeeCC
Q 020798           82 S--SDSRFLVSASDDKTIRLWDVPTATC-----------------------LKTLIGHTNYVFCVNFNPQSNMIVSGAFD  136 (321)
Q Consensus        82 ~--~~~~~l~~~~~d~~i~iwd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  136 (321)
                      +  ++++++++++.|+.|++||+.+...                       ...+.+|...+.++  +++++.+++++.|
T Consensus       212 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d  289 (464)
T 3v7d_B          212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYD  289 (464)
T ss_dssp             EESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETT
T ss_pred             ecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCC
Confidence            8  5788999999999999999987642                       34566788888776  5778999999999


Q ss_pred             CcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEE
Q 020798          137 ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFIL  216 (321)
Q Consensus       137 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  216 (321)
                      +.|++||+++++.+..+..|...|.+++|+|+++.+++++.||.|++||+++++.+..+. .+...+..+.++  +++++
T Consensus       290 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~  366 (464)
T 3v7d_B          290 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLS--DKFLV  366 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEC--SSEEE
T ss_pred             CeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCcEEEEEEc--CCEEE
Confidence            999999999999999999999999999999999999999999999999999988777664 456778888886  57999


Q ss_pred             EEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEE-ecCCCCCeEEEEe
Q 020798          217 VGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK-LEGHTDPVISVAS  295 (321)
Q Consensus       217 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~  295 (321)
                      +++.|+.|++||+.+++....... ......   ....+++.++++|+ ||.|++||+++++.+.. +..|..+|.+++|
T Consensus       367 s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~---~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~  441 (464)
T 3v7d_B          367 SAAADGSIRGWDANDYSRKFSYHH-TNLSAI---TTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNF  441 (464)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEEC-TTCCCE---EEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEE
T ss_pred             EEeCCCcEEEEECCCCceeeeecC-CCCccE---EEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEe
Confidence            999999999999998876655532 222222   22236788999888 89999999999999876 6778999999999


Q ss_pred             cCCCceEEEEeecCCccEEEc
Q 020798          296 HPTENIIASGALDNDRTVKIW  316 (321)
Q Consensus       296 ~p~~~~l~s~~~d~~~~i~iw  316 (321)
                      +  +..+++++.+ ++.+.+|
T Consensus       442 ~--~~~l~~~~~~-~g~~~i~  459 (464)
T 3v7d_B          442 K--GKTLVAAVEK-DGQSFLE  459 (464)
T ss_dssp             E--TTEEEEEEEE-TTEEEEE
T ss_pred             c--CCEEEEEEEe-CCeEEEE
Confidence            7  4444444433 3555444

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.7e-39  Score=309.00  Aligned_cols=294  Identities=21%  Similarity=0.412  Sum_probs=248.4

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC--CCCEEEE
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS--DSRFLVS   90 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~l~~   90 (321)
                      .+....+.+|...|.+++|+|+|++|++++.|+.|++|++..        ...+..+.+|...|.+++|+|  ++.++++
T Consensus       647 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  718 (1249)
T 3sfz_A          647 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--------GKLVHTYDEHSEQVNCCHFTNKSNHLLLAT  718 (1249)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------CCEEEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred             CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--------CceEEEEcCCCCcEEEEEEecCCCceEEEE
Confidence            345677889999999999999999999999999999998753        345677889999999999999  4568999


Q ss_pred             EeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeC-------------CC
Q 020798           91 ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPA-------------HS  157 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------------~~  157 (321)
                      |+.|+.|++||+.++++...+.+|...|.+++|+|+++.+++++.||.|++||+++++....+..             ..
T Consensus       719 g~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (1249)
T 3sfz_A          719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE  798 (1249)
T ss_dssp             EETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred             EeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999998877665532             22


Q ss_pred             CCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEE
Q 020798          158 DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT  237 (321)
Q Consensus       158 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~  237 (321)
                      ..+.+++|+|++..+++++ ++.+.+||+.++.........+...+..++|+|+++++++++.|+.|++||+.++..+..
T Consensus       799 ~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~  877 (1249)
T 3sfz_A          799 VIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD  877 (1249)
T ss_dssp             CCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee
Confidence            3688999999999988887 689999999998888777767778899999999999999999999999999999998888


Q ss_pred             EeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEE--------------------------------------------
Q 020798          238 YTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE--------------------------------------------  273 (321)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd--------------------------------------------  273 (321)
                      +.+|...+.++.   ..+++.+|++++.||.|++|+                                            
T Consensus       878 ~~~h~~~v~~v~---~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  954 (1249)
T 3sfz_A          878 CRGHLSWVHGVM---FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG  954 (1249)
T ss_dssp             ECCCSSCEEEEE---ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred             cCCCccceEEEE---ECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence            888776544332   234566666666666666665                                            


Q ss_pred             -----------------------------------cccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          274 -----------------------------------LQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       274 -----------------------------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                                                         +.+++....+.+|..+|.+++|+|++++|++++.  |+.|++|+.
T Consensus       955 ~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~--dg~i~vwd~ 1032 (1249)
T 3sfz_A          955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE--DSVIQVWNW 1032 (1249)
T ss_dssp             CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECS--SSBEEEEET
T ss_pred             eEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcC--CCEEEEEEC
Confidence                                               3444455666789999999999999999999984  589999997


Q ss_pred             cc
Q 020798          319 EK  320 (321)
Q Consensus       319 ~~  320 (321)
                      +.
T Consensus      1033 ~~ 1034 (1249)
T 3sfz_A         1033 QT 1034 (1249)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-39  Score=298.23  Aligned_cols=160  Identities=15%  Similarity=0.212  Sum_probs=137.9

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLW  100 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iw  100 (321)
                      .|...|.+++|+| |++|++++.|+.|++|++...        ..+..+. |...|.+++|+|++++|++|+.||.|++|
T Consensus        56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~--------~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lw  125 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ--------KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVY  125 (902)
T ss_dssp             SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC--------SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEE
T ss_pred             CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC--------cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEE
Confidence            5788999999999 889999999999999998642        2334443 66789999999999999999999999999


Q ss_pred             ecCCccee-----------eeeecCcccEEEEEECCC-CCEEEEeeCCCcEEEEecCCCEEEEEEeCC------------
Q 020798          101 DVPTATCL-----------KTLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAH------------  156 (321)
Q Consensus       101 d~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------------  156 (321)
                      |+.+++..           ....+|...|.+++|+|+ +..+++++.|+.| +||+++++....+..|            
T Consensus       126 d~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~  204 (902)
T 2oaj_A          126 DIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSE  204 (902)
T ss_dssp             ETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred             ECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccc
Confidence            99887653           234678899999999996 4689999999999 9999999988877655            


Q ss_pred             ------CCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q 020798          157 ------SDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC  191 (321)
Q Consensus       157 ------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  191 (321)
                            ...|.+++|+|++.+|++++.|+.|++||++++++
T Consensus       205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence                  46799999999999999999999999999876543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-38  Score=275.02  Aligned_cols=293  Identities=18%  Similarity=0.220  Sum_probs=230.3

Q ss_pred             ccEEEEEECCCCCEEEEecCCceEEEeeccccC---CC-----CCC----------------------------------
Q 020798           24 RAISSVKFSHDGRLLASSSADKTLLTYSLSSIS---NS-----DST----------------------------------   61 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~---~~-----~~~----------------------------------   61 (321)
                      .++.+++|+|+|++|+++ .++.|.+|++....   ..     ...                                  
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478899999999976666 57899999976543   00     000                                  


Q ss_pred             -------CCCcccccccccccEEEEEECCCCCEE-EEEeCCCcEEEEecC--Ccceeeeee--cCcccEEEEEECCCCCE
Q 020798           62 -------PPSPLQKFTGHEQGVSDLVFSSDSRFL-VSASDDKTIRLWDVP--TATCLKTLI--GHTNYVFCVNFNPQSNM  129 (321)
Q Consensus        62 -------~~~~~~~~~~h~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~  129 (321)
                             ...+.....+|...|.+++|+|++++| ++++.|+.|++||+.  +++.+..+.  .|...+.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                   000011123566689999999999996 889999999999998  777777665  56788999999999999


Q ss_pred             EEEeeCCCcEEEEecCCCEEEE----EEeCCCCCeeEEEEccC---CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCC
Q 020798          130 IVSGAFDETVRIWDVKTGKCLK----VLPAHSDPVTAVDFNRD---GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPP  202 (321)
Q Consensus       130 l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  202 (321)
                      |++++.+|.+++|++.+++...    .+..|...|.+++|+|+   +.+|++++.|+.|++||+++++.+..+...+...
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            9999999999999998776443    66779999999999999   9999999999999999999888777766677788


Q ss_pred             eEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccC----------------------CceeEEEeEEEecCCeEE
Q 020798          203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT----------------------NSKYCISSTFSVTNGKYI  260 (321)
Q Consensus       203 ~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~l  260 (321)
                      +..++|+ ++++|++++.|+.|++||+.+++.+..+..+.                      .....+......+++++|
T Consensus       244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            9999999 99999999999999999999999888876321                      111223344455788899


Q ss_pred             EEeC-CCCeEEEEEc--ccc---eEEEEecCCCCCeEEEEecCCCceEEEEeec----CCccEEEcccc
Q 020798          261 VSGS-EDSCVYLWEL--QSR---KVVQKLEGHTDPVISVASHPTENIIASGALD----NDRTVKIWTQE  319 (321)
Q Consensus       261 ~~~~-~dg~i~vwd~--~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d----~~~~i~iw~~~  319 (321)
                      ++++ .++.|++|++  ..+   +.+..+..| ..|.+++|+|++.+++.++.+    ++..|++|..+
T Consensus       323 ~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          323 AFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            8888 8999999999  555   667778888 889999999965555544432    24568888764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-38  Score=267.62  Aligned_cols=250  Identities=23%  Similarity=0.417  Sum_probs=211.3

Q ss_pred             cccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecC--CcceeeeeecCcccEEEEEECCC--CCEEEEeeCCCcEE
Q 020798           65 PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP--TATCLKTLIGHTNYVFCVNFNPQ--SNMIVSGAFDETVR  140 (321)
Q Consensus        65 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~  140 (321)
                      .+..+.+|...|.+++|+|++++|++|+.||.|++||+.  +.+....+.+|...|.+++|+|+  +++|++++.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            345678999999999999999999999999999999997  55667778899999999999987  89999999999999


Q ss_pred             EEecCCCE--EEEEEeCCCCCeeEEEEccC--CCEEEEEeCCCeEEEEeCCCCcee-eeeccCCCCCeEEEEEcc-----
Q 020798          141 IWDVKTGK--CLKVLPAHSDPVTAVDFNRD--GTMIVTSSYDGLCRIWDASTGHCM-KTLIDDENPPVSFVKFSP-----  210 (321)
Q Consensus       141 ~wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-----  210 (321)
                      +||+++++  ....+..|...|.+++|+|+  +..+++++.|+.|++||++..... ......+...+..++|+|     
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            99999987  66777889999999999999  899999999999999999876432 223345667899999999     


Q ss_pred             --------CCCEEEEEecCCeEEEEeCCCCc----EEEEEeccCCceeEEEeEEEecC---CeEEEEeCCCCeEEEEEcc
Q 020798          211 --------NGKFILVGTLDNTLRLWNYSTGK----ILKTYTGHTNSKYCISSTFSVTN---GKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       211 --------~g~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~  275 (321)
                              ++.++++++.|+.|++||+++++    .+..+.+|...+.++   ...++   +.+|++++.||.|++||+.
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~---~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV---AWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE---EECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE---EECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                    69999999999999999997654    445666777665443   33467   8999999999999999998


Q ss_pred             cce-----EEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          276 SRK-----VVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       276 ~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ++.     .+.....|...|.+++|+|++++|++++.  |+.|++|+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iw~~~  286 (379)
T 3jrp_A          240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKEN  286 (379)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES--SSSEEEEEEE
T ss_pred             CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC--CCcEEEEeCC
Confidence            763     22233448889999999999999999984  5899999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-37  Score=262.96  Aligned_cols=246  Identities=17%  Similarity=0.230  Sum_probs=215.4

Q ss_pred             cccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc--eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC
Q 020798           69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT  146 (321)
Q Consensus        69 ~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  146 (321)
                      +..|...|.+++|+|++++|++++.|+.|++||+.+++  ....+.+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            34588999999999999999999999999999998886  7788889999999999999999999999999999999988


Q ss_pred             CEEEEEE--eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce---eeeeccCCCCCeEEEEEccCCCEEEEEecC
Q 020798          147 GKCLKVL--PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC---MKTLIDDENPPVSFVKFSPNGKFILVGTLD  221 (321)
Q Consensus       147 ~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d  221 (321)
                      ++.....  ..|...+.+++|+|+++.+++++.|+.+++||++.+..   .......+...+..++|+|++++|++++.|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            8754443  56888999999999999999999999999999987652   334445567789999999999999999999


Q ss_pred             CeEEEEeC------------------CCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEe
Q 020798          222 NTLRLWNY------------------STGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       222 ~~i~i~d~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      +.|++||+                  ..++.+..+..|.....++   ...+++.+|++++.||.|++||+++++.+..+
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  240 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV---CFSANGSRVAWVSHDSTVCLADADKKMAVATL  240 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE---EECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE---EECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence            99999995                  4677888887777665443   33478999999999999999999999999999


Q ss_pred             cCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          284 EGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       284 ~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ..|..+|.+++|+|++.+|++|   .|+.|++|+.+.
T Consensus       241 ~~~~~~v~~~~~~~~~~~l~~~---~d~~i~i~~~~~  274 (372)
T 1k8k_C          241 ASETLPLLAVTFITESSLVAAG---HDCFPVLFTYDS  274 (372)
T ss_dssp             ECSSCCEEEEEEEETTEEEEEE---TTSSCEEEEEET
T ss_pred             ccCCCCeEEEEEecCCCEEEEE---eCCeEEEEEccC
Confidence            9999999999999999999887   358999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-37  Score=264.23  Aligned_cols=253  Identities=19%  Similarity=0.301  Sum_probs=209.6

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC--CCEEEEEe
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD--SRFLVSAS   92 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~~~~   92 (321)
                      +.+.+.+|...|++++|+|++++|++|+.|+.|++|++..      .....+..+.+|...|.+++|+++  +++|++++
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~   76 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS   76 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEET------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCC------CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec
Confidence            4567789999999999999999999999999999999852      112345667889999999999987  89999999


Q ss_pred             CCCcEEEEecCCcc--eeeeeecCcccEEEEEECCC--CCEEEEeeCCCcEEEEecCCCE--EEEEEeCCCCCeeEEEEc
Q 020798           93 DDKTIRLWDVPTAT--CLKTLIGHTNYVFCVNFNPQ--SNMIVSGAFDETVRIWDVKTGK--CLKVLPAHSDPVTAVDFN  166 (321)
Q Consensus        93 ~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~~  166 (321)
                      .||.|++||+.+++  ....+..|...+.+++|+|+  +.+|++++.|+.|++||++.+.  ....+..|...|.+++|+
T Consensus        77 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~  156 (379)
T 3jrp_A           77 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  156 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred             cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence            99999999999886  66777889999999999999  8999999999999999998773  344567899999999999


Q ss_pred             c-------------CCCEEEEEeCCCeEEEEeCCCCcee---eeeccCCCCCeEEEEEccC---CCEEEEEecCCeEEEE
Q 020798          167 R-------------DGTMIVTSSYDGLCRIWDASTGHCM---KTLIDDENPPVSFVKFSPN---GKFILVGTLDNTLRLW  227 (321)
Q Consensus       167 ~-------------~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~---g~~l~~~~~d~~i~i~  227 (321)
                      |             ++..+++++.|+.|++||++++...   ......+...+..++|+|+   +++|++++.|+.|++|
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw  236 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW  236 (379)
T ss_dssp             CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence            9             6899999999999999999765422   2233456678999999999   8999999999999999


Q ss_pred             eCCCCc---EEEEEec--cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          228 NYSTGK---ILKTYTG--HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       228 d~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      |+.++.   ....+..  +...   +......+++++|++++.||.|++|++..
T Consensus       237 d~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          237 TQDNEQGPWKKTLLKEEKFPDV---LWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EESSTTSCCEEEESSSSCCSSC---EEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             eCCCCCccceeeeeccccCCCc---EEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            998764   2222222  3333   33344457899999999999999999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-39  Score=283.10  Aligned_cols=261  Identities=10%  Similarity=0.099  Sum_probs=197.6

Q ss_pred             CcccEEEEEECCCC---------CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           22 HLRAISSVKFSHDG---------RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        22 h~~~v~~~~~s~~g---------~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      +.+.|.+++|+|++         ++||+++.++..                               -..+|+++.|++++
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-------------------------------~~~~~~~~~laS~s  180 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-------------------------------EPLNEHLEMFDKEK  180 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------------------------------------
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-------------------------------CccchhhhhhccCC
Confidence            56789999999987         788888754310                               01268889999999


Q ss_pred             CCCcEEEEecCCccee----eeeecCcccEEEEEECCC------CCEEEEeeCCCcEEEEecCCCEE-----------EE
Q 020798           93 DDKTIRLWDVPTATCL----KTLIGHTNYVFCVNFNPQ------SNMIVSGAFDETVRIWDVKTGKC-----------LK  151 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~~wd~~~~~~-----------~~  151 (321)
                      .|++|+|||+.+++..    ..+.+|.+.|..++|+|+      +.+|++++.||+|++||+..+..           ..
T Consensus       181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~  260 (524)
T 2j04_B          181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL  260 (524)
T ss_dssp             -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred             CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE
Confidence            9999999999776542    335667888999999996      57999999999999999976532           23


Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEE--EEccCC-CEEEEEecCCeEEEEe
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFV--KFSPNG-KFILVGTLDNTLRLWN  228 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~g-~~l~~~~~d~~i~i~d  228 (321)
                      .+..|...|++++|++++ .|++|+.||+|++||++++.........+...|..+  .|+|+| .+|++++.|++|+|||
T Consensus       261 ~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD  339 (524)
T 2j04_B          261 TLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN  339 (524)
T ss_dssp             EECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred             EEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence            567789999999999864 799999999999999987644333344567789988  578888 8999999999999999


Q ss_pred             CCCCcEEEEEeccCC--ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          229 YSTGKILKTYTGHTN--SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       229 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      +++++.+..+.+|..  .+.++  .| .|+++.+++++.|++|++||++++..+..+.+|.++|++++|+|++++|++|+
T Consensus       340 ~~~~~~~~~~~~~~~~~~v~~v--~f-sp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs  416 (524)
T 2j04_B          340 PKDIATTKTTVSRFRGSNLVPV--VY-CPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS  416 (524)
T ss_dssp             GGGHHHHCEEEEECSCCSCCCE--EE-ETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE
T ss_pred             CCCCCcccccccccccCcccce--Ee-CCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE
Confidence            998876666655543  22233  23 47788899999999999999999888788889999999999999999999999


Q ss_pred             ecCCccEEEcccc
Q 020798          307 LDNDRTVKIWTQE  319 (321)
Q Consensus       307 ~d~~~~i~iw~~~  319 (321)
                      .  |++|++|+..
T Consensus       417 ~--Dgtv~lwd~~  427 (524)
T 2j04_B          417 A--DGSLIITNAA  427 (524)
T ss_dssp             T--TTEEECCBSC
T ss_pred             C--CCEEEEEech
Confidence            4  5899999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2e-36  Score=252.81  Aligned_cols=248  Identities=27%  Similarity=0.483  Sum_probs=214.6

Q ss_pred             ccccccccccEEEEEECCC-CCEEEEEeCCCcEEEEecCCcc-----eeeeeecCcccEEEEEECCCCCEEEEeeCCCcE
Q 020798           66 LQKFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPTAT-----CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETV  139 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  139 (321)
                      ..++++|.+.|++|+|+|+ +++|++|+.|++|++||+.+.+     +...+.+|...|.+++|+|++++|++++.|+.|
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            3468899999999999997 6899999999999999987643     356678999999999999999999999999999


Q ss_pred             EEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCC--CEEEE
Q 020798          140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNG--KFILV  217 (321)
Q Consensus       140 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~l~~  217 (321)
                      ++|+............+...+....+++++..+++++.|+.+++||.............+...+..++|++++  .++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            9999999988888888888999999999999999999999999999987665555455666778889998764  56788


Q ss_pred             EecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecC
Q 020798          218 GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP  297 (321)
Q Consensus       218 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p  297 (321)
                      ++.|+.|++||+++++.+..+.+|...+.++.   ..+++++|++|+.||.|++||+++.+.+..+..+ ..|.+++|+|
T Consensus       191 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~---~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~  266 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT---VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSP  266 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEE---ECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECS
T ss_pred             EcCCCEEEEEECCCCceeeEecCCCCcEEEEE---ECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCC
Confidence            99999999999999999999998887765543   3578999999999999999999999988888755 5899999999


Q ss_pred             CCceEEEEeecCCccEEEccccc
Q 020798          298 TENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       298 ~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ++.+++++ .  |+.|++||.+.
T Consensus       267 ~~~~~~~~-~--d~~i~iwd~~~  286 (340)
T 4aow_A          267 NRYWLCAA-T--GPSIKIWDLEG  286 (340)
T ss_dssp             SSSEEEEE-E--TTEEEEEETTT
T ss_pred             CCceeecc-C--CCEEEEEECCC
Confidence            98766554 3  58999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.8e-37  Score=279.24  Aligned_cols=246  Identities=28%  Similarity=0.496  Sum_probs=213.0

Q ss_pred             ccccccccEEEEEECCCC-CEEEEEeCCCcEEEEecCCc-----ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEE
Q 020798           68 KFTGHEQGVSDLVFSSDS-RFLVSASDDKTIRLWDVPTA-----TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRI  141 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  141 (321)
                      .+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+.     .....+.+|...|.+++|+|++++|++|+.|+.|++
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            467899999999999874 78999999999999998753     335677899999999999999999999999999999


Q ss_pred             EecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee--ccCCCCCeEEEEEccCC--CEEEE
Q 020798          142 WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL--IDDENPPVSFVKFSPNG--KFILV  217 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~g--~~l~~  217 (321)
                      ||+.+++....+..|...|.+++|+|+++.|++++.|++|++||..........  ...+...+.+++|+|++  ..+++
T Consensus       457 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  536 (694)
T 3dm0_A          457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS  536 (694)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred             EECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence            999999999999999999999999999999999999999999998654322211  12455679999999986  58999


Q ss_pred             EecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecC
Q 020798          218 GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP  297 (321)
Q Consensus       218 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p  297 (321)
                      ++.|+.|++||+++++....+.+|...+.++   ...+++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+|
T Consensus       537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v---~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp  612 (694)
T 3dm0_A          537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV---AVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSP  612 (694)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEE---EECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECS
T ss_pred             EeCCCeEEEEECCCCcEEEEEcCCCCCEEEE---EEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcC
Confidence            9999999999999999999999988775544   3357899999999999999999999998887765 46899999999


Q ss_pred             CCceEEEEeecCCccEEEccccc
Q 020798          298 TENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       298 ~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ++.+|++++   ++.|+|||++.
T Consensus       613 ~~~~l~~~~---~~~i~iwd~~~  632 (694)
T 3dm0_A          613 NRYWLCAAT---EHGIKIWDLES  632 (694)
T ss_dssp             SSSEEEEEE---TTEEEEEETTT
T ss_pred             CCcEEEEEc---CCCEEEEECCC
Confidence            999888875   35699999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.3e-39  Score=273.69  Aligned_cols=243  Identities=15%  Similarity=0.174  Sum_probs=198.5

Q ss_pred             ccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc--ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC
Q 020798           70 TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA--TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG  147 (321)
Q Consensus        70 ~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  147 (321)
                      ..+...|.+++|+|++++|++++.|+.|++||+.++  +....+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence            345678999999999999999999999999999987  677788899999999999999999999999999999999887


Q ss_pred             E---EEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce---eeeeccCCCCCeEEEEEccCCCEEEEEecC
Q 020798          148 K---CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC---MKTLIDDENPPVSFVKFSPNGKFILVGTLD  221 (321)
Q Consensus       148 ~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d  221 (321)
                      +   ....+..|...|.+++|+|+++.|++++.|+.|++||+++++.   ...+...+...+..++|+|++++|++++.|
T Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d  167 (377)
T 3dwl_C           88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD  167 (377)
T ss_dssp             -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred             CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence            6   5666778999999999999999999999999999999988763   444444377889999999999999999999


Q ss_pred             CeEEEEeCC------------------CCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceE----
Q 020798          222 NTLRLWNYS------------------TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV----  279 (321)
Q Consensus       222 ~~i~i~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----  279 (321)
                      +.|++||+.                  .++.+..+ .|...+.++   ...+++++|++++.||.|++||+.+++.    
T Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~---~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  243 (377)
T 3dwl_C          168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV---GFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA  243 (377)
T ss_dssp             SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE---EECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred             CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE---EECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence            999999985                  24455555 665554443   3457899999999999999999998876    


Q ss_pred             EEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          280 VQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       280 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +..+.+|..+|.+++|+|++++|++|+  .++.+ +|+..
T Consensus       244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~~~-~~~~~  280 (377)
T 3dwl_C          244 LITVKLSQLPLRSLLWANESAIVAAGY--NYSPI-LLQGN  280 (377)
T ss_dssp             CCCEECSSSCEEEEEEEETTEEEEEES--SSSEE-EECCC
T ss_pred             eEeecCCCCceEEEEEcCCCCEEEEEc--CCcEE-EEEeC
Confidence            778889999999999999999999986  33444 66553

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-38  Score=268.51  Aligned_cols=266  Identities=9%  Similarity=0.061  Sum_probs=209.0

Q ss_pred             eccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcE
Q 020798           18 TLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTI   97 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i   97 (321)
                      ..+.-...|.+++|||||+++|+++.|++|+  +..           ..+.+.+|...|.+++|+|+|       .++.+
T Consensus        10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~-----------~~~~l~gh~~~v~~V~FsPdg-------~~~~~   69 (588)
T 2j04_A           10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPK-----------YAKDINCNSKNLFHVKEFPLE-------FENKL   69 (588)
T ss_dssp             CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EEC-----------CCSCCSSBGGGTEEEEEECCC-------CCCTT
T ss_pred             cHhHhhccEEEEEECCCCCEEEEEcCCceee--ccc-----------ccceecCCCccEEEEEECCCC-------CcceE
Confidence            3345567899999999999999999999998  421           112346899999999999998       45655


Q ss_pred             EEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCC-----CeeEEEEccCCCEE
Q 020798           98 RLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD-----PVTAVDFNRDGTMI  172 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l  172 (321)
                      .+|+..... ...+ .|...|.+++|+|+|..|++++.||.|++||.+.  +...+. |..     .+.+++|+|+|++|
T Consensus        70 ~~~~~~~~~-~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~L  144 (588)
T 2j04_A           70 DFELAQQNG-LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSI  144 (588)
T ss_dssp             TTSCCCSSC-SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCE
T ss_pred             EEEeCCCce-Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEE
Confidence            555543222 1222 4578899999999999999999999999999543  556666 665     49999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCce-------eeee---ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcE---EEEE-
Q 020798          173 VTSSYDGLCRIWDASTGHC-------MKTL---IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKI---LKTY-  238 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~-------~~~~---~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~---~~~~-  238 (321)
                      ++|+.||+|++||+.++..       +..+   ...+...|..++|+|+|  +++++.|+.+++||+..++.   .+.+ 
T Consensus       145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred             EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence            9999999999999988752       3333   24456789999999999  88889999999999988763   3455 


Q ss_pred             eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEe--cCCCceEEEEeecCCccEEEc
Q 020798          239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVAS--HPTENIIASGALDNDRTVKIW  316 (321)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~p~~~~l~s~~~d~~~~i~iw  316 (321)
                      .+|...+..+.+  .   ++.||+++ ++.|++||+.+++......+|.+.|.+++|  +|++..|++++  ++|. ++|
T Consensus       223 ~~h~~~V~svaF--s---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~--edG~-klw  293 (588)
T 2j04_A          223 NASRRKITDLKI--V---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN--KTSY-KVL  293 (588)
T ss_dssp             CCCSSCCCCEEE--E---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS--SCEE-EEE
T ss_pred             ccccCcEEEEEE--E---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc--CCCC-EEE
Confidence            356555555543  2   57888887 699999999988774444489999999999  99999999987  4578 999


Q ss_pred             ccc
Q 020798          317 TQE  319 (321)
Q Consensus       317 ~~~  319 (321)
                      ..+
T Consensus       294 ~~d  296 (588)
T 2j04_A          294 LED  296 (588)
T ss_dssp             ESS
T ss_pred             eec
Confidence            753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4e-37  Score=285.59  Aligned_cols=252  Identities=21%  Similarity=0.403  Sum_probs=224.0

Q ss_pred             cccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           65 PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        65 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      ....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~   84 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            45677899999999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc-CCCEEEEEecCCe
Q 020798          145 KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP-NGKFILVGTLDNT  223 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~~  223 (321)
                      .+++.+..+..|...|++++|+|++..+++++.||.|++||+.++.........+...+.+++|+| +++.+++++.|+.
T Consensus        85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  164 (814)
T 3mkq_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (814)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence            999999999999999999999999999999999999999999877444444456677899999999 8899999999999


Q ss_pred             EEEEeCCCCcEEEEEeccC-CceeEEEeEEEe-cCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCce
Q 020798          224 LRLWNYSTGKILKTYTGHT-NSKYCISSTFSV-TNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENI  301 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  301 (321)
                      |++||+.+++....+..+. ....++.  +.+ +++.++++++.||.|++||+.+++.+..+.+|..+|.+++|+|++++
T Consensus       165 v~vwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  242 (814)
T 3mkq_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVD--YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI  242 (814)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCCCEEE--ECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred             EEEEECCCCcceeEEecCCCCCEEEEE--EEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            9999998887776666544 4443332  221 27899999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCccEEEccccc
Q 020798          302 IASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       302 l~s~~~d~~~~i~iw~~~~  320 (321)
                      |++|+.  ||.|++|+...
T Consensus       243 l~~~~~--dg~v~vwd~~~  259 (814)
T 3mkq_A          243 IISGSE--DGTLKIWNSST  259 (814)
T ss_dssp             EEEEET--TSCEEEEETTT
T ss_pred             EEEEeC--CCeEEEEECCC
Confidence            999984  58999999763

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.9e-37  Score=262.65  Aligned_cols=259  Identities=17%  Similarity=0.255  Sum_probs=216.6

Q ss_pred             ceeeeeccCCcccEEEEEECCC----C---CEEEEecCCceEEEeeccccCCCCCCCCCcccccccc-----cccEEEEE
Q 020798           13 YTLTQTLNGHLRAISSVKFSHD----G---RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH-----EQGVSDLV   80 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~----g---~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~i~~~~   80 (321)
                      ......+.+|...|++++|+|+    |   ++|++++.|+.|++|++.....   ........+..|     ...|.+++
T Consensus        52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~  128 (397)
T 1sq9_A           52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE---TKKVIFEKLDLLDSDMKKHSFWALK  128 (397)
T ss_dssp             GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT---TCCEEEEEECCSCTTGGGSCEEEEE
T ss_pred             CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc---cccccceeecccccccCCCcEEEEE
Confidence            3456777899999999999999    9   9999999999999999875321   111114556677     58999999


Q ss_pred             EC----CCCCE-EEEEeCCCcEEEEecCC------cceee-----ee-------ecCcccEEEEEECCCCCEEEEeeCCC
Q 020798           81 FS----SDSRF-LVSASDDKTIRLWDVPT------ATCLK-----TL-------IGHTNYVFCVNFNPQSNMIVSGAFDE  137 (321)
Q Consensus        81 ~~----~~~~~-l~~~~~d~~i~iwd~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg  137 (321)
                      |+    |++++ |++++.|+.|++||+.+      .+.+.     .+       ..|...+.+++|+|++ .|++++.|+
T Consensus       129 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg  207 (397)
T 1sq9_A          129 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG  207 (397)
T ss_dssp             EECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS
T ss_pred             EeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC
Confidence            99    99999 99999999999999988      66555     55       3488889999999999 999999999


Q ss_pred             cEEEEecCCCEEEEEEeC---C---CCCeeEEEEccCCCEEEEEeCC---CeEEEEeCCCCceeeeeccC----------
Q 020798          138 TVRIWDVKTGKCLKVLPA---H---SDPVTAVDFNRDGTMIVTSSYD---GLCRIWDASTGHCMKTLIDD----------  198 (321)
Q Consensus       138 ~i~~wd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~----------  198 (321)
                      .|++||+++++.+..+..   |   ...+.+++|+|++.+|++++.|   +.|++||+++++.+..+...          
T Consensus       208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  287 (397)
T 1sq9_A          208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE  287 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred             cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccc
Confidence            999999999999999988   8   9999999999999999999999   99999999988877666431          


Q ss_pred             --CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEe------cc---------------CCceeEEEeEEEec
Q 020798          199 --ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT------GH---------------TNSKYCISSTFSVT  255 (321)
Q Consensus       199 --~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~---------------~~~~~~~~~~~~~~  255 (321)
                        +...+..++|+|++++|++++.|+.|++||+++++.+..+.      .|               ...+..+   ...+
T Consensus       288 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~---~~~~  364 (397)
T 1sq9_A          288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV---KFLK  364 (397)
T ss_dssp             BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE---EEEC
T ss_pred             cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE---Eecc
Confidence              56779999999999999999999999999999999999998      66               5554443   3346


Q ss_pred             CC----------eEEEEeCCCCeEEEEEcccce
Q 020798          256 NG----------KYIVSGSEDSCVYLWELQSRK  278 (321)
Q Consensus       256 ~~----------~~l~~~~~dg~i~vwd~~~~~  278 (321)
                      ++          .+|++++.||.|++|++.+++
T Consensus       365 ~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          365 KGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            66          799999999999999998753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-38  Score=271.98  Aligned_cols=273  Identities=12%  Similarity=0.274  Sum_probs=214.3

Q ss_pred             EECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccc-ccccccEEEEEECC-CCCEEEEEeCCCcEEEEecCC---
Q 020798           30 KFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF-TGHEQGVSDLVFSS-DSRFLVSASDDKTIRLWDVPT---  104 (321)
Q Consensus        30 ~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~---  104 (321)
                      .|+|+++.+++++      .|+.         ....+..+ .+|.+.|.+++|+| ++++|++|+.||.|++||+.+   
T Consensus        34 ~f~~~~~~~~~~~------~w~~---------~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~   98 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNL---------RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV   98 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGC---------CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT
T ss_pred             hcCCccccccccc------cccc---------cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECccccc
Confidence            4677888777665      2532         23445666 78999999999999 999999999999999999866   


Q ss_pred             ccee--eeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC---CCEEEEEEe----------C--CCCCeeEEE--E
Q 020798          105 ATCL--KTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK---TGKCLKVLP----------A--HSDPVTAVD--F  165 (321)
Q Consensus       105 ~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~---~~~~~~~~~----------~--~~~~v~~~~--~  165 (321)
                      +...  .....|...|.+++|+|++++|++++.||.|++||+.   +++......          .  +...+.++.  +
T Consensus        99 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  178 (437)
T 3gre_A           99 GEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV  178 (437)
T ss_dssp             TCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE
T ss_pred             CcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEE
Confidence            3211  1122589999999999999999999999999999984   443333222          1  455666666  5


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC-CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEe-ccCC
Q 020798          166 NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD-ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT-GHTN  243 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~  243 (321)
                      ++++..+++++.|+.|++||+++++.+..+... +...+.+++|+|++++|++++.|+.|++||+++++.+..+. .+..
T Consensus       179 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  258 (437)
T 3gre_A          179 NEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA  258 (437)
T ss_dssp             CSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE
T ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC
Confidence            678999999999999999999998887776543 56689999999999999999999999999999999988886 4444


Q ss_pred             ceeEEEeE-EEecCCeEEEEeCCCCeEEEEEcccceEEEEecC--------------------------CCCCeEEEEec
Q 020798          244 SKYCISST-FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG--------------------------HTDPVISVASH  296 (321)
Q Consensus       244 ~~~~~~~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------------------------h~~~v~~~~~~  296 (321)
                      .+.++... ...+++.+|++|+.||.|++||+++++.+..+.+                          |..+|++++|+
T Consensus       259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~  338 (437)
T 3gre_A          259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS  338 (437)
T ss_dssp             EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred             ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence            43333221 2235788999999999999999999887776664                          44557788888


Q ss_pred             CCCceEEEEeecCCccEEEccccc
Q 020798          297 PTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       297 p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                       ++++|++|+.  |+.|++||++.
T Consensus       339 -~~~~l~s~~~--d~~i~~wd~~~  359 (437)
T 3gre_A          339 -NDKILLTDEA--TSSIVMFSLNE  359 (437)
T ss_dssp             -TTEEEEEEGG--GTEEEEEETTC
T ss_pred             -CceEEEecCC--CCeEEEEECCC
Confidence             6789999985  48999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-36  Score=253.59  Aligned_cols=250  Identities=21%  Similarity=0.404  Sum_probs=215.6

Q ss_pred             ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC
Q 020798           66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK  145 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  145 (321)
                      ...+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEeCCCCceeeee----------ccCCC--CCeEEEEE
Q 020798          146 TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD-----GLCRIWDASTGHCMKTL----------IDDEN--PPVSFVKF  208 (321)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~----------~~~~~--~~~~~~~~  208 (321)
                      +++....+. +..++.+++|+|++..+++++.+     +.+++||++.......+          ...+.  ..+..++|
T Consensus       105 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          105 NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            999888887 78899999999999999999998     99999998754321111          11122  27899999


Q ss_pred             ccCCCEEEEEecCCeEEEEeCCC-CcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC
Q 020798          209 SPNGKFILVGTLDNTLRLWNYST-GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT  287 (321)
Q Consensus       209 ~~~g~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~  287 (321)
                      +|+++++++++.|+.|++||+++ .+.+..+..|...+.++   ...+++.+|++++.||.|++||+++++.+..+. +.
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~  259 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM---QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TD  259 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE---EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE---EECCCCCEEEEecCCceEEEEECCCCceeeeec-CC
Confidence            99999999999999999999998 78888888877765443   334789999999999999999999998888777 67


Q ss_pred             CCeEEEEecCCCceEEEEeecCCc------------cEEEccccc
Q 020798          288 DPVISVASHPTENIIASGALDNDR------------TVKIWTQEK  320 (321)
Q Consensus       288 ~~v~~~~~~p~~~~l~s~~~d~~~------------~i~iw~~~~  320 (321)
                      .++.+++|+|+++++++++.++..            .|++|+.+.
T Consensus       260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  304 (369)
T 3zwl_B          260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF  304 (369)
T ss_dssp             SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT
T ss_pred             CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC
Confidence            899999999999999999854211            788998753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.1e-36  Score=256.31  Aligned_cols=248  Identities=25%  Similarity=0.407  Sum_probs=208.1

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLW  100 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iw  100 (321)
                      .|...|++++|+|++++|++|+.||.+++|++..        ...+..+.+|...|.+++|  ++++|++++.|+.|++|
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~  201 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES--------QTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHH  201 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--------CCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC--------CeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEE
Confidence            3889999999999999999999999999998753        2345677799999999999  56799999999999999


Q ss_pred             ecC-CcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC-EEEEEe--
Q 020798          101 DVP-TATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT-MIVTSS--  176 (321)
Q Consensus       101 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--  176 (321)
                      |++ .......+.+|...|.+++|+|++++|++++.|+.|++||+++++....+..|...|.+++|+|++. ++++++  
T Consensus       202 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs  281 (401)
T 4aez_A          202 DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT  281 (401)
T ss_dssp             ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCT
T ss_pred             ecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCC
Confidence            998 4566777889999999999999999999999999999999999988888889999999999999765 556654  


Q ss_pred             CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEeCCCCcEEEE--EeccCCceeEEEeEE
Q 020798          177 YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT--LDNTLRLWNYSTGKILKT--YTGHTNSKYCISSTF  252 (321)
Q Consensus       177 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~--~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~  252 (321)
                      .|+.|++||+++++....+.  ....+..++|+|+++++++++  .|+.|++||+.+++....  +.+|...+.++   .
T Consensus       282 ~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~---~  356 (401)
T 4aez_A          282 MDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS---A  356 (401)
T ss_dssp             TTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEE---E
T ss_pred             CCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEE---E
Confidence            79999999999988777663  445799999999999999954  899999999998665544  55676665444   3


Q ss_pred             EecCCeEEEEeCCCCeEEEEEcccceEEEEe
Q 020798          253 SVTNGKYIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      ..+++.+|++++.||.|++|++.+++.+...
T Consensus       357 ~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          357 LSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             ECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            3478999999999999999999988776544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.7e-37  Score=264.61  Aligned_cols=237  Identities=16%  Similarity=0.147  Sum_probs=175.6

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEecCCccee-----eeeecCcccEEEEEECC--------CCCEEEEeeCCCcEEEEecC
Q 020798           79 LVFSSDSRFLVSASDDKTIRLWDVPTATCL-----KTLIGHTNYVFCVNFNP--------QSNMIVSGAFDETVRIWDVK  145 (321)
Q Consensus        79 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~~wd~~  145 (321)
                      ..+++++++|++++.|++|++||..+++..     ..+.+|.+.|.+++|+|        ++++|++++.|++|++||++
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence            344456678999999999999999887543     34578999999999997        78899999999999999999


Q ss_pred             CCEEEEEEeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEeCCCCceeeeec------------------------cCCC
Q 020798          146 TGKCLKVLPAHSDPVTAVDFNRDGT-MIVTSSYDGLCRIWDASTGHCMKTLI------------------------DDEN  200 (321)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~------------------------~~~~  200 (321)
                      ++.+...+..|..++.+++|+|++. +|++++.|++|++||+++++......                        ..+.
T Consensus       175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  254 (393)
T 4gq1_A          175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA  254 (393)
T ss_dssp             TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred             CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence            8888877788899999999999875 79999999999999998765432211                        1233


Q ss_pred             CCeEEEEEc-cCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCcee----------------EEEeEEEe-cCCeEEEE
Q 020798          201 PPVSFVKFS-PNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKY----------------CISSTFSV-TNGKYIVS  262 (321)
Q Consensus       201 ~~~~~~~~~-~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~----------------~~~~~~~~-~~~~~l~~  262 (321)
                      ..+..+.|. |+++.+++++.|+.+++||+..++....+..+.....                .+...+.+ .++.++++
T Consensus       255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (393)
T 4gq1_A          255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA  334 (393)
T ss_dssp             SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred             ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence            456677776 7999999999999999999988766555543322111                11122222 35667888


Q ss_pred             eCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          263 GSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      |+.||.|++||+.+++.+....+|..+|++++|+|+|++||+++.|  | +.+|++
T Consensus       335 gs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~--G-v~lvrL  387 (393)
T 4gq1_A          335 HSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG--S-VLLTRL  387 (393)
T ss_dssp             ETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS--E-EEEEEE
T ss_pred             ECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC--C-eEEEEE
Confidence            9999999999999998887788899999999999999999999843  3 555554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.7e-36  Score=261.58  Aligned_cols=247  Identities=19%  Similarity=0.403  Sum_probs=207.5

Q ss_pred             ccccccccEEEEEECCC-CCEEEEEeCCCcEEEEecCC----------cceeeeeecCcccEEEEEECCCCC-EEEEeeC
Q 020798           68 KFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWDVPT----------ATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAF  135 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~  135 (321)
                      ....|.+.|.+++|+|+ +++|++++.+|.|++|++.+          ......+.+|...+.+++|+|++. +|++++.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            44679999999999997 67999999999999999976          466777889999999999999988 9999999


Q ss_pred             CCcEEEEecCCCEE-------EEEEeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEeCCCC---ceeeeeccCCCCCeE
Q 020798          136 DETVRIWDVKTGKC-------LKVLPAHSDPVTAVDFNR-DGTMIVTSSYDGLCRIWDASTG---HCMKTLIDDENPPVS  204 (321)
Q Consensus       136 dg~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~~~~  204 (321)
                      ||.|++||+..+..       ...+..|...|.+++|+| ++..|++++.|+.|++||++++   .....+ ..+...+.
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~  281 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-DAHTAEVN  281 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE-ECCSSCEE
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe-ecCCCCeE
Confidence            99999999987321       345668999999999999 6778999999999999999876   333333 35667899


Q ss_pred             EEEEccCCC-EEEEEecCCeEEEEeCCC-CcEEEEEeccCCceeEEEeEEEecCC-eEEEEeCCCCeEEEEEccc-----
Q 020798          205 FVKFSPNGK-FILVGTLDNTLRLWNYST-GKILKTYTGHTNSKYCISSTFSVTNG-KYIVSGSEDSCVYLWELQS-----  276 (321)
Q Consensus       205 ~~~~~~~g~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~-----  276 (321)
                      +++|+|+++ ++++++.|+.|++||+++ ...+..+..|...+.++  .+ .+++ .+|++++.||.|++||+..     
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i--~~-sp~~~~~l~s~~~d~~i~iwd~~~~~~~~  358 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV--QW-SPHNETILASSGTDRRLHVWDLSKIGEEQ  358 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEE--EE-CSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEE--EE-CCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence            999999987 688999999999999987 56677888887765544  33 3555 5799999999999999987     


Q ss_pred             ---------ceEEEEecCCCCCeEEEEecCCCc-eEEEEeecCCccEEEccccc
Q 020798          277 ---------RKVVQKLEGHTDPVISVASHPTEN-IIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       277 ---------~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~d~~~~i~iw~~~~  320 (321)
                               .+++..+.+|...|++++|+|++. +|++++  .|+.|+||++..
T Consensus       359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s--~dg~i~iw~~~~  410 (430)
T 2xyi_A          359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS--EDNIMQVWQMAE  410 (430)
T ss_dssp             CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE--TTSEEEEEEECH
T ss_pred             CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE--CCCCEEEeEccc
Confidence                     367778889999999999999999 788887  458999999853

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-35  Score=254.23  Aligned_cols=243  Identities=24%  Similarity=0.428  Sum_probs=206.6

Q ss_pred             ccccccEEEEEECCCCC-EEEEEeCCCcEEEEec----CCcc------eeeeeec----------CcccEEEEEECCCCC
Q 020798           70 TGHEQGVSDLVFSSDSR-FLVSASDDKTIRLWDV----PTAT------CLKTLIG----------HTNYVFCVNFNPQSN  128 (321)
Q Consensus        70 ~~h~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~  128 (321)
                      ..|...|.+++|+|+++ +|++++.|+.|++|++    .+++      ....+..          |...|.+++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            45668999999999999 9999999999999999    8777      3443433          677999999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee-------------
Q 020798          129 MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL-------------  195 (321)
Q Consensus       129 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------------  195 (321)
                      +|++++.||.|++|| .+++....+..|..+|.+++|+|+++.|++++.|+.+++||+++++....+             
T Consensus       122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  200 (425)
T 1r5m_A          122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE  200 (425)
T ss_dssp             EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred             EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence            999999999999999 667778888899999999999999999999999999999999876543321             


Q ss_pred             ------------------------------------------ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc
Q 020798          196 ------------------------------------------IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK  233 (321)
Q Consensus       196 ------------------------------------------~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~  233 (321)
                                                                ...+...+..++|+|++++|++++.|+.|++||+++++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  280 (425)
T 1r5m_A          201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN  280 (425)
T ss_dssp             -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS
T ss_pred             cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence                                                      11234568889999999999999999999999999998


Q ss_pred             EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccE
Q 020798          234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTV  313 (321)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i  313 (321)
                      .+..+..|.....++.   ..+++ ++++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++  .|+.|
T Consensus       281 ~~~~~~~~~~~i~~~~---~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i  354 (425)
T 1r5m_A          281 SQNCFYGHSQSIVSAS---WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF--MDGQV  354 (425)
T ss_dssp             CSEEECCCSSCEEEEE---EETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE--TTSCE
T ss_pred             cceEecCCCccEEEEE---ECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE--CCCeE
Confidence            8888887776654433   33677 899999999999999999999999999999999999999999999998  45899


Q ss_pred             EEcccc
Q 020798          314 KIWTQE  319 (321)
Q Consensus       314 ~iw~~~  319 (321)
                      ++|+.+
T Consensus       355 ~i~~~~  360 (425)
T 1r5m_A          355 NVYDLK  360 (425)
T ss_dssp             EEEECH
T ss_pred             EEEECC
Confidence            999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=261.97  Aligned_cols=243  Identities=14%  Similarity=0.322  Sum_probs=199.6

Q ss_pred             cccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc-----------eeeeeecCc------------ccEEEEEECCCC
Q 020798           71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT-----------CLKTLIGHT------------NYVFCVNFNPQS  127 (321)
Q Consensus        71 ~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~  127 (321)
                      .|.+.|.+++|+|++++|++|+.||.|++||+.+++           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            357899999999999999999999999999998776           466788898            889999999998


Q ss_pred             --CEEEEeeCCCcEEEEecCCCEEE---------------------------------------EE-EeCCCCCeeEEEE
Q 020798          128 --NMIVSGAFDETVRIWDVKTGKCL---------------------------------------KV-LPAHSDPVTAVDF  165 (321)
Q Consensus       128 --~~l~~~~~dg~i~~wd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~  165 (321)
                        ..|++++.|+.|++||+.++...                                       .. ...|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              78999999999999998764431                                       12 3578999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCC-Cceeeee------ccCCCCCeEEEEEccCC-CEEEEEecCCeEEEEeCCCCcE---
Q 020798          166 NRDGTMIVTSSYDGLCRIWDAST-GHCMKTL------IDDENPPVSFVKFSPNG-KFILVGTLDNTLRLWNYSTGKI---  234 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~------~~~~~~~~~~~~~~~~g-~~l~~~~~d~~i~i~d~~~~~~---  234 (321)
                      +|+++.|+++ .|+.|++||++. .+....+      ...+...+..++|+|++ ++|++++.|+.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 899999999984 3333322      34566789999999998 9999999999999999998876   


Q ss_pred             -EEEEeccCC------------ceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc-ceEEEEecCCCCC-----------
Q 020798          235 -LKTYTGHTN------------SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS-RKVVQKLEGHTDP-----------  289 (321)
Q Consensus       235 -~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~-----------  289 (321)
                       +..+..+..            .+   ......+++++|++++. +.|++||+++ ++.+..+.+|...           
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSI---SDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCE---EEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred             eeeEeccCCCccccccccccCceE---EEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence             677777654            33   33344578999999998 9999999987 7788888888532           


Q ss_pred             ----eEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          290 ----VISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       290 ----v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                          +..++|+|++++|++|+.  |+.|++||.+.
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~--dg~v~iwd~~~  373 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSY--NNFFRMFDRNT  373 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECS--TTEEEEEETTT
T ss_pred             ccccceEEEECCCCCEEEEecc--CCEEEEEEcCC
Confidence                334999999999999984  58999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-36  Score=278.52  Aligned_cols=248  Identities=23%  Similarity=0.424  Sum_probs=209.1

Q ss_pred             cccccccccEEEEEECCCCCEEEEEeCCCcEEEEecC--CcceeeeeecCcccEEEEEECCC--CCEEEEeeCCCcEEEE
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP--TATCLKTLIGHTNYVFCVNFNPQ--SNMIVSGAFDETVRIW  142 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~w  142 (321)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.  +.+....+.+|...|.+++|+|+  +++|++|+.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            3567899999999999999999999999999999997  45667778899999999999988  8999999999999999


Q ss_pred             ecCCCE--EEEEEeCCCCCeeEEEEccC--CCEEEEEeCCCeEEEEeCCCCcee-eeeccCCCCCeEEEEEcc-------
Q 020798          143 DVKTGK--CLKVLPAHSDPVTAVDFNRD--GTMIVTSSYDGLCRIWDASTGHCM-KTLIDDENPPVSFVKFSP-------  210 (321)
Q Consensus       143 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-------  210 (321)
                      |+.+++  ....+..|..+|.+++|+|+  +..+++++.||.|++||++++... ......+...+..+.|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999887  66777889999999999999  999999999999999999876322 222345667899999999       


Q ss_pred             ------CCCEEEEEecCCeEEEEeCCCC----cEEEEEeccCCceeEEEeEEEecC---CeEEEEeCCCCeEEEEEcccc
Q 020798          211 ------NGKFILVGTLDNTLRLWNYSTG----KILKTYTGHTNSKYCISSTFSVTN---GKYIVSGSEDSCVYLWELQSR  277 (321)
Q Consensus       211 ------~g~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~  277 (321)
                            ++.++++++.||.|++||++++    .....+.+|...+.++.   ..++   +.+|++|+.||.|++||+.++
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~---~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA---WSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE---ECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE---eccCCCCCCEEEEEecCCEEEEecCCCC
Confidence                  5899999999999999999876    45667777777655443   3466   899999999999999999886


Q ss_pred             e-----EEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          278 K-----VVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       278 ~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +     .+.....|...|++++|+|++++|++|+.  ||.|++|+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~--Dg~I~vwd~~  284 (753)
T 3jro_A          240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKEN  284 (753)
T ss_dssp             SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS--SSCEECCBCC
T ss_pred             CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC--CCEEEEEecC
Confidence            4     33344568899999999999999999984  5899999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-36  Score=255.95  Aligned_cols=245  Identities=15%  Similarity=0.319  Sum_probs=206.6

Q ss_pred             cccccccEEEEEECCC----CCEEEEEeCCCcEEEEecCCcceeeeeec-----CcccEEEEEECCC----CCEEEEeeC
Q 020798           69 FTGHEQGVSDLVFSSD----SRFLVSASDDKTIRLWDVPTATCLKTLIG-----HTNYVFCVNFNPQ----SNMIVSGAF  135 (321)
Q Consensus        69 ~~~h~~~i~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~  135 (321)
                      ..+|...|.+++|+|+    ...+++++.++.|++||+.+++.+..+..     |...+.+++|+|+    +.+|++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            3479999999999984    45667777777999999998876665543     5577999999998    668999999


Q ss_pred             CCcEEEEecCCCEEEEEEeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeeec--cCCCCCeEEEEEccCC
Q 020798          136 DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR-DGTMIVTSSYDGLCRIWDASTGHCMKTLI--DDENPPVSFVKFSPNG  212 (321)
Q Consensus       136 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~g  212 (321)
                      ||.|++||+.+++.+..+..|..+|.+++|+| ++..|++++.||.|++||+++++....+.  ..+...+..++|+|++
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  173 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG  173 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC
Confidence            99999999999999999999999999999999 89999999999999999999887766652  4567789999999999


Q ss_pred             CEEEEEecCCeEEEEeCCCCcEEEEEe----------------------------ccCCceeEEEeEEEecCCeEEEEeC
Q 020798          213 KFILVGTLDNTLRLWNYSTGKILKTYT----------------------------GHTNSKYCISSTFSVTNGKYIVSGS  264 (321)
Q Consensus       213 ~~l~~~~~d~~i~i~d~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~l~~~~  264 (321)
                      ++|++++.|+.|++||+++++.+..+.                            .|...+.++..  .   +.++++++
T Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~---~~~l~~~~  248 (366)
T 3k26_A          174 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW--L---GDLILSKS  248 (366)
T ss_dssp             SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE--E---TTEEEEEC
T ss_pred             CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE--c---CCEEEEEe
Confidence            999999999999999998765433222                            25555555443  2   67999999


Q ss_pred             CCCeEEEEEcccce--------------EEEEecCCCCCeEEEEecCC--CceEEEEeecCCccEEEccccc
Q 020798          265 EDSCVYLWELQSRK--------------VVQKLEGHTDPVISVASHPT--ENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       265 ~dg~i~vwd~~~~~--------------~~~~~~~h~~~v~~~~~~p~--~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .||.|++||+.+.+              .+..+.+|..+|.+++|+|+  +++|++|+  .|+.|++|+++.
T Consensus       249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~--~dg~i~vwd~~~  318 (366)
T 3k26_A          249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN--QVGKLYVWDLEV  318 (366)
T ss_dssp             SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC--TTSCEEEEECCS
T ss_pred             cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe--cCCcEEEEECCC
Confidence            99999999998763              37788899999999999999  99999998  458999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-37  Score=282.24  Aligned_cols=252  Identities=19%  Similarity=0.298  Sum_probs=205.4

Q ss_pred             eeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC--CCEEEEEeC
Q 020798           16 TQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD--SRFLVSASD   93 (321)
Q Consensus        16 ~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~~~~~   93 (321)
                      ...+.+|.+.|++++|+|+|++|++|+.||.|++|++...      .......+.+|.+.|.+++|+|+  +++|++|+.
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~   75 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   75 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC------CCccceeccCCcCceEEEEecCCCCCCEEEEEeC
Confidence            3567899999999999999999999999999999987521      12345677899999999999988  999999999


Q ss_pred             CCcEEEEecCCcc--eeeeeecCcccEEEEEECCC--CCEEEEeeCCCcEEEEecCCCE--EEEEEeCCCCCeeEEEEcc
Q 020798           94 DKTIRLWDVPTAT--CLKTLIGHTNYVFCVNFNPQ--SNMIVSGAFDETVRIWDVKTGK--CLKVLPAHSDPVTAVDFNR  167 (321)
Q Consensus        94 d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~~~  167 (321)
                      ||.|++||+.+++  ....+.+|...|.+++|+|+  ++.+++++.||.|++||++++.  ....+..|...|.+++|+|
T Consensus        76 Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p  155 (753)
T 3jro_A           76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  155 (753)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred             CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence            9999999998886  56777889999999999999  9999999999999999998763  3445678999999999999


Q ss_pred             -------------CCCEEEEEeCCCeEEEEeCCCCce---eeeeccCCCCCeEEEEEccC---CCEEEEEecCCeEEEEe
Q 020798          168 -------------DGTMIVTSSYDGLCRIWDASTGHC---MKTLIDDENPPVSFVKFSPN---GKFILVGTLDNTLRLWN  228 (321)
Q Consensus       168 -------------~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~---g~~l~~~~~d~~i~i~d  228 (321)
                                   ++..+++++.||.|++||++++..   .......+...+.+++|+|+   ++++++++.||.|++||
T Consensus       156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                         588999999999999999987632   22233456778999999999   89999999999999999


Q ss_pred             CCCCcE-----EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          229 YSTGKI-----LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       229 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      +.+++.     +.....+...+.++   ...+++.++++|+.||.|++|++..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~l---~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          236 QDNEQGPWKKTLLKEEKFPDVLWRA---SWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             ESSSSSCCBCCBSSSSCCSSCCCCE---EECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CCCCCCcceeEEeccCCCCCceEEE---EEcCCCCEEEEEcCCCEEEEEecCC
Confidence            987631     11122233433333   3357899999999999999999873

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.3e-36  Score=251.33  Aligned_cols=247  Identities=15%  Similarity=0.268  Sum_probs=199.9

Q ss_pred             cccccccccEEEEEECCCCCEE-EEEeC---CCcEEEEecCCcceeee-eecCcccEEEEEECCC---CCEEEEeeCCCc
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFL-VSASD---DKTIRLWDVPTATCLKT-LIGHTNYVFCVNFNPQ---SNMIVSGAFDET  138 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l-~~~~~---d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~---~~~l~~~~~dg~  138 (321)
                      ..+.+|...|.+++|+|+++.+ ++++.   |+.|++||+.+++.... ..+|...|.+++|+|+   +++|++++.||.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            3456799999999999998655 45655   89999999998876443 3478899999999998   699999999999


Q ss_pred             EEEEecCCCE-EEEEEeCCCCCeeEEEE------ccCCCEEEEEeCCCeEEEEeCCCCc-eeeeeccC---CCCCeEEEE
Q 020798          139 VRIWDVKTGK-CLKVLPAHSDPVTAVDF------NRDGTMIVTSSYDGLCRIWDASTGH-CMKTLIDD---ENPPVSFVK  207 (321)
Q Consensus       139 i~~wd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~---~~~~~~~~~  207 (321)
                      |++||+.+++ ....+..|...|.+++|      +|+++.|++++.|+.|++||++++. ....+...   ....+..++
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA  171 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence            9999999887 77888899999999954      6889999999999999999998876 34443221   133677777


Q ss_pred             ----EccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEec---CCeEEEEeCCCCeEEEEEcccceEE
Q 020798          208 ----FSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVT---NGKYIVSGSEDSCVYLWELQSRKVV  280 (321)
Q Consensus       208 ----~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~  280 (321)
                          |+|+++++++++.|+.|++||+++++.... ..+.....++   ...+   ++.+|++++.||.|++||+++++.+
T Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~---~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  247 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSL---EFDRKDISMNKLVATSLEGKFHVFDMRTQHPT  247 (357)
T ss_dssp             EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEE---EESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred             EEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEE---EcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence                788999999999999999999999887554 3444444333   3345   7899999999999999999887654


Q ss_pred             EEe-----cCCCCCeEEEEecCCCc-eEEEEeecCCccEEEcccc
Q 020798          281 QKL-----EGHTDPVISVASHPTEN-IIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       281 ~~~-----~~h~~~v~~~~~~p~~~-~l~s~~~d~~~~i~iw~~~  319 (321)
                      ..+     .+|..+|.+++|+|+++ +|++|+  .|+.|++|+++
T Consensus       248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~  290 (357)
T 3i2n_A          248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAG--GAGGLHLWKYE  290 (357)
T ss_dssp             TEEEEEEEECCSSCEEEEEEETTEEEEEEEEE--TTSEEEEEEEE
T ss_pred             cceeeeccCCCcCCEEEEEECCCCCcEEEEEe--CCCcEEEeecC
Confidence            444     38999999999999998 899988  45899999986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-35  Score=240.70  Aligned_cols=242  Identities=25%  Similarity=0.444  Sum_probs=206.0

Q ss_pred             CcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 020798           64 SPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD  143 (321)
Q Consensus        64 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  143 (321)
                      .....+.+|.+.|.+++| +++++|++++.||.|++||+.+++....+..|...+.+++|+|++++|++++.|+.|++|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            456678899999999999 9999999999999999999999888888889999999999999999999999999999999


Q ss_pred             cCCC---EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc-CCCEEEEEe
Q 020798          144 VKTG---KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP-NGKFILVGT  219 (321)
Q Consensus       144 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~  219 (321)
                      +...   +....+..|...+.+++|  +++.+++++.|+.+++||  .++....+ ..+...+..+.+.| +++++++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~  162 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWDAKVVSFSENKFLTAS  162 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEE
T ss_pred             eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec-ccCCCceeEEEEccCCCCEEEEEE
Confidence            8654   556677889999999999  567999999999999999  33434333 34567788899988 899999999


Q ss_pred             cCCeEEEEeCCCCcEEEEEec-cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCC
Q 020798          220 LDNTLRLWNYSTGKILKTYTG-HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT  298 (321)
Q Consensus       220 ~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  298 (321)
                      .|+.|++||  ..+.+..+.. +.....++   ...+++. +++++.||.|++||+++++.+..+.+|..+|.+++|+|+
T Consensus       163 ~d~~i~i~d--~~~~~~~~~~~~~~~i~~~---~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  236 (313)
T 3odt_A          163 ADKTIKLWQ--NDKVIKTFSGIHNDVVRHL---AVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN  236 (313)
T ss_dssp             TTSCEEEEE--TTEEEEEECSSCSSCEEEE---EEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             CCCCEEEEe--cCceEEEEeccCcccEEEE---EEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC
Confidence            999999999  4556666765 55544333   3346777 889999999999999999999999999999999999999


Q ss_pred             CceEEEEeecCCccEEEccccc
Q 020798          299 ENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       299 ~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      + .|++++  .|+.|++||.+.
T Consensus       237 ~-~l~~~~--~dg~v~iwd~~~  255 (313)
T 3odt_A          237 G-DIVSCG--EDRTVRIWSKEN  255 (313)
T ss_dssp             S-CEEEEE--TTSEEEEECTTT
T ss_pred             C-CEEEEe--cCCEEEEEECCC
Confidence            9 688887  458999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.1e-35  Score=252.93  Aligned_cols=258  Identities=24%  Similarity=0.418  Sum_probs=210.2

Q ss_pred             eccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcE
Q 020798           18 TLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTI   97 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i   97 (321)
                      .+.+|...|++++|+|+|++||+|+.|+.|++|++..        ...+..+.+|...+.++.++  +++|++|+.|+.+
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--------~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i  211 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHI  211 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--------TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEE
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--------CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCce
Confidence            3457888999999999999999999999999998754        24567788999999988874  6799999999999


Q ss_pred             EEEecCCc-ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE----EEEEEeCCCCCeeEEEEccCCC-E
Q 020798           98 RLWDVPTA-TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK----CLKVLPAHSDPVTAVDFNRDGT-M  171 (321)
Q Consensus        98 ~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~  171 (321)
                      ++||.... ..+..+.+|...+..+.++|+++++++++.|+.+++|+..+++    .+.....|...|.+++|+|.+. .
T Consensus       212 ~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~  291 (420)
T 4gga_A          212 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV  291 (420)
T ss_dssp             EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred             eEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE
Confidence            99998765 4456778999999999999999999999999999999998764    3445667889999999999765 5


Q ss_pred             EEEE--eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEeCCCCcEEEEEeccCCceeE
Q 020798          172 IVTS--SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT--LDNTLRLWNYSTGKILKTYTGHTNSKYC  247 (321)
Q Consensus       172 l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~  247 (321)
                      ++++  +.|+.|++||++++.+...+..  ...+..+.|+|+++.+++++  .|+.|++||+.+++.+..+.+|...+.+
T Consensus       292 la~~~gs~D~~I~iwd~~t~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~  369 (420)
T 4gga_A          292 LATGGGTSDRHIRIWNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS  369 (420)
T ss_dssp             EEEEECTTTCEEEEEETTTTEEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEEeecCCCEEEEEeCCccccceeecc--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence            5543  4799999999999987776643  34678899999999988765  6899999999999999999999887655


Q ss_pred             EEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCe
Q 020798          248 ISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV  290 (321)
Q Consensus       248 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v  290 (321)
                      +.   ..++|++|++|+.|++|+|||+.......+.+.+...+
T Consensus       370 l~---~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~  409 (420)
T 4gga_A          370 LT---MSPDGATVASAAADETLRLWRCFELDPARRREREKASA  409 (420)
T ss_dssp             EE---ECTTSSCEEEEETTTEEEEECCSCSSCC----------
T ss_pred             EE---EcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCc
Confidence            43   35799999999999999999998765555554444433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-35  Score=254.21  Aligned_cols=257  Identities=18%  Similarity=0.307  Sum_probs=210.2

Q ss_pred             eeccCCcccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC-CEEEEEeCC
Q 020798           17 QTLNGHLRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS-RFLVSASDD   94 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d   94 (321)
                      ..+.+|...|++++|+| ++++|++|+.|+.|++|++....... ....++..+.+|...|.+++|+|++ ++|++++.|
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            45679999999999999 99999999999999999986532211 1124567788999999999999998 699999999


Q ss_pred             CcEEEEecCCcceeeee--ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE-eCCCCC-eeEEEEccCCC
Q 020798           95 KTIRLWDVPTATCLKTL--IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL-PAHSDP-VTAVDFNRDGT  170 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~~~~~~  170 (321)
                      +.|++||+.+++....+  .+|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..|... +..+.|+|++.
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK  233 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence            99999999999988888  789999999999999999999999999999999999988888 677765 89999999999


Q ss_pred             EEEEE---eCCCeEEEEeCCCCce-eeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcE-EEEEeccC--
Q 020798          171 MIVTS---SYDGLCRIWDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKI-LKTYTGHT--  242 (321)
Q Consensus       171 ~l~~~---~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~--  242 (321)
                      +++++   +.|+.|++||++++.. .......+...+..++|+|+++++++++ .|+.|++||+.+++. +..+..+.  
T Consensus       234 ~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~  313 (402)
T 2aq5_A          234 ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSK  313 (402)
T ss_dssp             EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCS
T ss_pred             EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccC
Confidence            99988   7899999999987654 2333334556788999999999997554 799999999998873 44444433  


Q ss_pred             CceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceE
Q 020798          243 NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV  279 (321)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (321)
                      .....+   ...+++.++++  .++.+++|++.+++.
T Consensus       314 ~~v~~~---~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          314 ESQRGM---GYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             SCCSEE---EECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             Ccccce---EEeccccccee--cceeEEEEEcCCCcE
Confidence            444333   23467777654  567999999987653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3.4e-35  Score=247.03  Aligned_cols=285  Identities=12%  Similarity=0.178  Sum_probs=205.9

Q ss_pred             CCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEE-
Q 020798           10 FRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL-   88 (321)
Q Consensus        10 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-   88 (321)
                      +...+....+++|...|++++|+|||++|++|+.++ +++|++....        .  ....+..++..+.+.++++.+ 
T Consensus         6 ~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~   74 (355)
T 3vu4_A            6 MITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA--------H--IMSQEMRHLSKVRMLHRTNYVA   74 (355)
T ss_dssp             -------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE--------E--EEEEECSCCCEEEECTTSSEEE
T ss_pred             ccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc--------e--eeeeecCCeEEEEEcCCCCEEE
Confidence            333444456688999999999999999999998775 6799865321        1  112222357888899988877 


Q ss_pred             EEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC-EEEEEEeCCCCCeeEEEEcc
Q 020798           89 VSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG-KCLKVLPAHSDPVTAVDFNR  167 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~  167 (321)
                      ++++.|+.|++||+.+++++..+. +...+.++.++++.  ++++ .++.|++||+.++ +.+..+..   +...+++++
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~  147 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN  147 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET
T ss_pred             EEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc
Confidence            567888999999999998877776 66789999998764  4443 4789999999887 55554443   444566777


Q ss_pred             CCCEEEE--EeCCCeEEEEeCCCCce--------------e-eeeccCCCCCeEEEEEccCCCEEEEEecCCe-EEEEeC
Q 020798          168 DGTMIVT--SSYDGLCRIWDASTGHC--------------M-KTLIDDENPPVSFVKFSPNGKFILVGTLDNT-LRLWNY  229 (321)
Q Consensus       168 ~~~~l~~--~~~dg~i~~~d~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~-i~i~d~  229 (321)
                        ..+++  ++.+|.|++||++++..              . ......|...|.+++|+|+|++|++++.|++ |++||+
T Consensus       148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~  225 (355)
T 3vu4_A          148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT  225 (355)
T ss_dssp             --TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred             --cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence              55655  57899999999987541              0 2334567788999999999999999999998 999999


Q ss_pred             CCCcEEEEEe-c-cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceE--EEEec---------------------
Q 020798          230 STGKILKTYT-G-HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV--VQKLE---------------------  284 (321)
Q Consensus       230 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~---------------------  284 (321)
                      ++++.+..+. + |...+.++   .+.+++.+|++++.|+.|++||++....  ...+.                     
T Consensus       226 ~~~~~~~~~~~g~h~~~v~~~---~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (355)
T 3vu4_A          226 EDGVLVREFRRGLDRADVVDM---KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV  302 (355)
T ss_dssp             TTCCEEEEEECTTCCSCEEEE---EECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC
T ss_pred             CCCcEEEEEEcCCCCCcEEEE---EECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc
Confidence            9999999997 4 66655443   3457899999999999999999976431  11111                     


Q ss_pred             CCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          285 GHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       285 ~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .+..+...++|+|++++|++++  .||.+++|++.
T Consensus       303 ~~~~~~~~~a~~~d~~~l~~~~--~dg~~~~~~~~  335 (355)
T 3vu4_A          303 DKHVRGCKIAWISESSLVVVWP--HTRMIETFKVV  335 (355)
T ss_dssp             CTTCCCCEEEESSSSEEEEEET--TTTEEEEEEEE
T ss_pred             CCCCCceEEEEeCCCCEEEEEe--CCCeEEEEEEE
Confidence            1122347799999999999998  46899999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3e-35  Score=249.95  Aligned_cols=245  Identities=14%  Similarity=0.245  Sum_probs=197.7

Q ss_pred             cccccccccccEEEEEECCCC-CEEEEEeCCCcEEEEecCCcceeeeee--cCcccEEEEEECC-CCCEEEEeeCCCcEE
Q 020798           65 PLQKFTGHEQGVSDLVFSSDS-RFLVSASDDKTIRLWDVPTATCLKTLI--GHTNYVFCVNFNP-QSNMIVSGAFDETVR  140 (321)
Q Consensus        65 ~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  140 (321)
                      ....+.+|...|.+++|+|++ ++|++|+.|+.|++||+.+++....+.  +|...|.+++|+| ++++|++++.|+.|+
T Consensus        65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~  144 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT  144 (383)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred             eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence            345667899999999999999 899999999999999999887665554  6999999999999 678999999999999


Q ss_pred             EEecCCCEEEEEEeCC---CCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCC-EEE
Q 020798          141 IWDVKTGKCLKVLPAH---SDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK-FIL  216 (321)
Q Consensus       141 ~wd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~  216 (321)
                      +||+++. ....+..+   ...+.+++|+|+++.+++++.|+.|++||++ ++....+. .+...+..++|+|+++ +++
T Consensus       145 iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~-~h~~~v~~~~~~~~~~~~l~  221 (383)
T 3ei3_B          145 LRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK-LHKAKVTHAEFNPRCDWLMA  221 (383)
T ss_dssp             EEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE-CSSSCEEEEEECSSCTTEEE
T ss_pred             EEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec-cCCCcEEEEEECCCCCCEEE
Confidence            9999864 44444433   4789999999999999999999999999995 44454443 4567899999999999 899


Q ss_pred             EEecCCeEEEEeCCC----CcEEEEEeccCCceeEEEeEEEec-CCeEEEEeCCCCeEEEEEcccceEEEEecCCC----
Q 020798          217 VGTLDNTLRLWNYST----GKILKTYTGHTNSKYCISSTFSVT-NGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT----  287 (321)
Q Consensus       217 ~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~----  287 (321)
                      +++.|+.|++||+++    +..+..+ +|...+.++   ...+ ++.+|++++.|+.|++||+++++.+..+.+|.    
T Consensus       222 s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~---~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  297 (383)
T 3ei3_B          222 TSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAA---YFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF  297 (383)
T ss_dssp             EEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEE---EECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred             EEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEE---EEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence            999999999999987    5666666 465554443   3346 89999999999999999999877655555442    


Q ss_pred             -------------CCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          288 -------------DPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       288 -------------~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                                   ..+..++|+|++++  +|+  .|+.|++||.+.
T Consensus       298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s--~d~~i~iwd~~~  339 (383)
T 3ei3_B          298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLN--DKRTIDIYDANS  339 (383)
T ss_dssp             TTSCCCCCEECSSSSEEEEECBCCTTT--CTT--CCCCEEEEETTT
T ss_pred             ccccceEEeccCCCCceEEEecCCccc--ccC--CCCeEEEEecCC
Confidence                         23444666666666  555  468999999853

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-36  Score=253.67  Aligned_cols=268  Identities=12%  Similarity=0.099  Sum_probs=202.3

Q ss_pred             EEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecC-----
Q 020798           29 VKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP-----  103 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-----  103 (321)
                      ..+.+++++|++|+.|+.|++|++....        .+..+.  ...|.++.|+|+   +++++.|+.|++|+..     
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~--------~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~  108 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSK--------TITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI  108 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSS--------CEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCc--------EEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence            3456788999999999999999986422        222222  456777888887   9999999999999765     


Q ss_pred             ----Ccceeeee-ecCcccEEEEEECC--CCCEEEEeeCCCcEEEEecCCCEEEEEEe-CCCCCeeEEEEccCCCEEEEE
Q 020798          104 ----TATCLKTL-IGHTNYVFCVNFNP--QSNMIVSGAFDETVRIWDVKTGKCLKVLP-AHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus       104 ----~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~  175 (321)
                          +.+.+... .+|...|.+++++|  +++++++++.||.|++||+++++...... .+...+.+++|+|++.++++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg  188 (343)
T 3lrv_A          109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY  188 (343)
T ss_dssp             EETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred             eecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence                34433333 36778899999999  99999999999999999999988866553 455689999999999999999


Q ss_pred             eCCCeEEEEeCCCCcee-eeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec---cCCceeEEEeE
Q 020798          176 SYDGLCRIWDASTGHCM-KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG---HTNSKYCISST  251 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~  251 (321)
                      +.||.|++||+++++.. ..+...+...+..++|+|+|.+|++++ ++.|++||+++++.+..+..   +...... ...
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~  266 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGT-VTY  266 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CC-EEE
T ss_pred             cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccc-eEE
Confidence            99999999999998876 444433678899999999999999999 55999999998876544432   1111111 123


Q ss_pred             EEecCCeEEEEeCC-CCeEEEEEcccceEEEEecCCCCCeEEEEecC---CCceEEEEeecCCccEEEcc
Q 020798          252 FSVTNGKYIVSGSE-DSCVYLWELQSRKVVQKLEGHTDPVISVASHP---TENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       252 ~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ...+++++|++++. |+.|++|++.........    .++..++|+|   +...+++++.|  +.+.++-
T Consensus       267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d--~~~~~~~  330 (343)
T 3lrv_A          267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGD--GGIAAIL  330 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEET--TEEEEEE
T ss_pred             EECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecC--CceEEEE
Confidence            34578999999888 999999999665432222    5678888888   78888888754  5666653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.6e-35  Score=247.54  Aligned_cols=241  Identities=13%  Similarity=0.163  Sum_probs=202.1

Q ss_pred             cccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc---eeeeeecCcccEEEEEECCCCC-EEEEeeCCCcEEEEec
Q 020798           69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT---CLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDV  144 (321)
Q Consensus        69 ~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~  144 (321)
                      ..+|...|.+++|+|++++|++++.|+.|++|++.++.   ......+|...|.+++|+|+++ +|++++.||.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            34789999999999999999999999999999998776   3455668999999999999999 9999999999999999


Q ss_pred             -CCCEEEEEEeC--CCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCC---------CceeeeeccCCCCCeEEEEEccCC
Q 020798          145 -KTGKCLKVLPA--HSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST---------GHCMKTLIDDENPPVSFVKFSPNG  212 (321)
Q Consensus       145 -~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~g  212 (321)
                       .+++. ..+..  |...|.+++|+| +..+++++.|+.|++||+++         +++...+.  +...+..++|+|++
T Consensus        87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~  162 (342)
T 1yfq_A           87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR  162 (342)
T ss_dssp             SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE
T ss_pred             ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCc
Confidence             77754 56677  999999999999 99999999999999999886         55444432  56678999999987


Q ss_pred             CEEEEEecCCeEEEEeCCC-CcE--EEEEeccCCceeEEEeEEEec-CCeEEEEeCCCCeEEEEEcccc------eEEEE
Q 020798          213 KFILVGTLDNTLRLWNYST-GKI--LKTYTGHTNSKYCISSTFSVT-NGKYIVSGSEDSCVYLWELQSR------KVVQK  282 (321)
Q Consensus       213 ~~l~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~------~~~~~  282 (321)
                        +++++.|+.|++||+++ +..  ......+.....+   ....+ ++.++++++.||.|++|++...      +....
T Consensus       163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~---i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD---VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEE---EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             --EEEEeCCCeEEEEECCccccccceeeecCCCCceeE---EEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence              88999999999999987 542  3333344444333   33446 7899999999999999999876      66777


Q ss_pred             ecCCCC---------CeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          283 LEGHTD---------PVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       283 ~~~h~~---------~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +..|..         +|.+++|+|++++|++|+  .|+.|++||.+.
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~vwd~~~  282 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG--SDGIISCWNLQT  282 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE--TTSCEEEEETTT
T ss_pred             eecccccccccccceeEEEEEEcCCCCEEEEec--CCceEEEEcCcc
Confidence            777755         999999999999999998  458999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.8e-35  Score=252.46  Aligned_cols=257  Identities=23%  Similarity=0.383  Sum_probs=210.4

Q ss_pred             eeccCCcccEEEEEECCC-CCEEEEecCCceEEEeeccccCCCCC--CCCCcccccccccccEEEEEECCCCC-EEEEEe
Q 020798           17 QTLNGHLRAISSVKFSHD-GRLLASSSADKTLLTYSLSSISNSDS--TPPSPLQKFTGHEQGVSDLVFSSDSR-FLVSAS   92 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~-g~~l~~~~~d~~v~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~~~~   92 (321)
                      ..+.+|.+.|++++|+|+ +++||+++.+|.|++|++........  ....++..+.+|...|.+++|+|+++ +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445689999999999997 68999999999999999875322111  12345677889999999999999988 999999


Q ss_pred             CCCcEEEEecCCcce-------eeeeecCcccEEEEEECC-CCCEEEEeeCCCcEEEEecCCC---EEEEEEeCCCCCee
Q 020798           93 DDKTIRLWDVPTATC-------LKTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVKTG---KCLKVLPAHSDPVT  161 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~  161 (321)
                      .||.|++|++..+..       ...+.+|...|.+++|+| ++..|++++.|+.|++||++++   +....+..|...|.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987321       345668999999999999 6788999999999999999876   46667778999999


Q ss_pred             EEEEccCCC-EEEEEeCCCeEEEEeCCCCc-eeeeeccCCCCCeEEEEEccCCC-EEEEEecCCeEEEEeCCC-------
Q 020798          162 AVDFNRDGT-MIVTSSYDGLCRIWDASTGH-CMKTLIDDENPPVSFVKFSPNGK-FILVGTLDNTLRLWNYST-------  231 (321)
Q Consensus       162 ~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~d~~i~i~d~~~-------  231 (321)
                      +++|+|++. ++++++.||.|++||+++.. .+..+ ..+...+..++|+|+++ +|++++.|+.|++||+..       
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe-ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            999999987 68899999999999998743 33333 44667899999999985 688999999999999976       


Q ss_pred             -------CcEEEEEeccCCceeEEEeEEEecCCe-EEEEeCCCCeEEEEEcccc
Q 020798          232 -------GKILKTYTGHTNSKYCISSTFSVTNGK-YIVSGSEDSCVYLWELQSR  277 (321)
Q Consensus       232 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~  277 (321)
                             .+++..+.+|...+..+   ...+++. +|++++.||.|++|++...
T Consensus       361 ~~~~~~~~~~~~~~~~h~~~v~~~---~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          361 EDAEDGPPELLFIHGGHTAKISDF---SWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HHHHHCCTTEEEECCCCSSCEEEE---EECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cccccCCcceEEEcCCCCCCceEE---EECCCCCCEEEEEECCCCEEEeEcccc
Confidence                   35677777776655443   3346677 8999999999999999754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.8e-34  Score=246.35  Aligned_cols=293  Identities=13%  Similarity=0.180  Sum_probs=232.1

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      ....+..+ ..+.+++|+|++.++++++.++.|.+|++......   ...+...+.+|...|.+++|+++++++++++.|
T Consensus       115 ~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  190 (433)
T 3bws_A          115 FISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV---RLSPPEKYKKKLGFVETISIPEHNELWVSQMQA  190 (433)
T ss_dssp             EEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE---EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred             EEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe---eecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence            34444444 34558999998888899999999999997643211   001112456888999999999999999999999


Q ss_pred             CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEE
Q 020798           95 KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV  173 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  173 (321)
                      +.|++||+.+++....+..|...+.+++|+|+++.++ +++.++.|++||+++++....+..+ ..+.+++|+|+++.++
T Consensus       191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELY  269 (433)
T ss_dssp             TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEE
T ss_pred             CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEE
Confidence            9999999999988888888999999999999999875 4558999999999999887777654 4589999999999988


Q ss_pred             EEe--------CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEE-EEEecCCeEEEEeCCCCcEEEEEeccCCc
Q 020798          174 TSS--------YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFI-LVGTLDNTLRLWNYSTGKILKTYTGHTNS  244 (321)
Q Consensus       174 ~~~--------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  244 (321)
                      +++        .|+.|++||+++++......  +...+..++|+|+++.+ ++++.++.|++||+.+++.+..+.. ...
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~  346 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV-FDK  346 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC-SSS
T ss_pred             EEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC-CCC
Confidence            887        48899999999887655542  22357789999999765 5557899999999999988877753 233


Q ss_pred             eeEEEeEEEecCCeEEEEeCC---------------CCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecC
Q 020798          245 KYCISSTFSVTNGKYIVSGSE---------------DSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDN  309 (321)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~  309 (321)
                      ..   .....++++++++++.               ||.|++||+.+++.+..+..+ ..+.+++|+|++++|++++. .
T Consensus       347 ~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~-~  421 (433)
T 3bws_A          347 PN---TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDF-L  421 (433)
T ss_dssp             EE---EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEET-T
T ss_pred             CC---eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEEC-C
Confidence            22   2334478887777765               579999999999988888764 57899999999999988764 3


Q ss_pred             CccEEEccccc
Q 020798          310 DRTVKIWTQEK  320 (321)
Q Consensus       310 ~~~i~iw~~~~  320 (321)
                      |+.|++|+++.
T Consensus       422 d~~i~v~~~~~  432 (433)
T 3bws_A          422 DHQIRVYRRDG  432 (433)
T ss_dssp             TTEEEEEEETT
T ss_pred             CCeEEEEEecC
Confidence            68999999863

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-35  Score=252.47  Aligned_cols=275  Identities=13%  Similarity=0.070  Sum_probs=205.3

Q ss_pred             CCccccccCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEE
Q 020798            2 SSDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVF   81 (321)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~   81 (321)
                      |.|.+++  + .+..+.+++|...|.+++|+|+|       .++.+.+|+...         .....+ .|...|.+++|
T Consensus        34 s~D~TV~--d-~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~---------~~~~~~-~~~~~V~~vaw   93 (588)
T 2j04_A           34 FPDISIG--Q-PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ---------NGLLNS-QPVCYPRVCKP   93 (588)
T ss_dssp             SSSEEEE--E-ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS---------SCSSTT-SCSCCEEEEEE
T ss_pred             cCCceee--c-ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCC---------ceEeec-CCCCcEEEEEE
Confidence            3444555  2 23335568999999999999999       355544443211         111222 45788999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcc-----cEEEEEECCCCCEEEEeeCCCcEEEEecCCCE-------E
Q 020798           82 SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTN-----YVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK-------C  149 (321)
Q Consensus        82 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-------~  149 (321)
                      +|+|++||+++.||.|++||...  ++..+. |..     .+.+++|+|+|++|++|+.||+|++||++++.       .
T Consensus        94 SPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~  170 (588)
T 2j04_A           94 SPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYF  170 (588)
T ss_dssp             CSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEE
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccccee
Confidence            99999999999999999999644  455555 554     49999999999999999999999999998874       2


Q ss_pred             EEEE----eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCcee---eeeccCCCCCeEEEEEccCCCEEEEEecCC
Q 020798          150 LKVL----PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM---KTLIDDENPPVSFVKFSPNGKFILVGTLDN  222 (321)
Q Consensus       150 ~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~  222 (321)
                      +..+    .+|...|.+++|+|+|  +++++.|+++++||+.++...   ..+...+...|..++|+  |+.+++++ ++
T Consensus       171 l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~  245 (588)
T 2j04_A          171 ESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PG  245 (588)
T ss_dssp             EEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SS
T ss_pred             eeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CC
Confidence            4555    5677899999999999  889999999999999876632   23333555678999999  68888886 69


Q ss_pred             eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce-----------------------E
Q 020798          223 TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK-----------------------V  279 (321)
Q Consensus       223 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------------------~  279 (321)
                      .|++||+.+++......+|......+.. ...+++..+++++.||+ ++|....-.                       .
T Consensus       246 tIkLWd~~~~~~~~~~~gh~~~V~~va~-~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~  323 (588)
T 2j04_A          246 YVHKIDLKNYSISSLKTGSLENFHIIPL-NHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNE  323 (588)
T ss_dssp             EEEEEETTTTEEEEEECSCCSCCCEEEE-TTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTS
T ss_pred             eEEEEECCCCeEEEEEcCCCceEEEEEe-eeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCc
Confidence            9999999988774444477776655432 01478999999999999 999873211                       1


Q ss_pred             EEEecCCCCCeEEEEecCCCceEEEEee
Q 020798          280 VQKLEGHTDPVISVASHPTENIIASGAL  307 (321)
Q Consensus       280 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~  307 (321)
                      +..+++ ...|.+++|+|+|..+|+++.
T Consensus       324 l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          324 FNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            111222 335899999999999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.4e-34  Score=245.46  Aligned_cols=234  Identities=33%  Similarity=0.638  Sum_probs=206.7

Q ss_pred             cccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE
Q 020798           69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK  148 (321)
Q Consensus        69 ~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  148 (321)
                      ..+|...|.++.+  ++++|++|+.||.|++||+.+++....+.+|...|.++++  +++.|++|+.||.|++||+.+++
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~  204 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE  204 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence            3456778998887  7899999999999999999999999999999999999988  67899999999999999999999


Q ss_pred             EEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceee--eeccCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 020798          149 CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK--TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL  226 (321)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i  226 (321)
                      .+..+..|...|.+++|++  ..+++++.||.|++||++++....  .....+...+..+.+  +++++++++.|+.|++
T Consensus       205 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v  280 (435)
T 1p22_A          205 MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV  280 (435)
T ss_dssp             EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred             EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence            9999999999999999974  589999999999999998776442  334556677888888  7889999999999999


Q ss_pred             EeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          227 WNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       227 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      ||+++++.+..+.+|.....++..     ++.++++|+.||.|++||+++++.+..+.+|..+|.+++|  ++.+|++|+
T Consensus       281 wd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~  353 (435)
T 1p22_A          281 WNTSTCEFVRTLNGHKRGIACLQY-----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA  353 (435)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEE-----ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred             EECCcCcEEEEEcCCCCcEEEEEe-----CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence            999999999999988877655432     4789999999999999999999999999999999999999  688999998


Q ss_pred             ecCCccEEEcccc
Q 020798          307 LDNDRTVKIWTQE  319 (321)
Q Consensus       307 ~d~~~~i~iw~~~  319 (321)
                      .  ||.|++||.+
T Consensus       354 ~--dg~i~vwd~~  364 (435)
T 1p22_A          354 Y--DGKIKVWDLV  364 (435)
T ss_dssp             T--TSCEEEEEHH
T ss_pred             C--CCcEEEEECC
Confidence            4  5899999974

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.2e-35  Score=251.09  Aligned_cols=248  Identities=17%  Similarity=0.270  Sum_probs=193.8

Q ss_pred             ccccccccEEEEEECC-CCCEEEEEeCCCcEEEEecCCcce--eeeeecCcccEEEEEECC-CCCEEEEeeCCCcEEEEe
Q 020798           68 KFTGHEQGVSDLVFSS-DSRFLVSASDDKTIRLWDVPTATC--LKTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWD  143 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd  143 (321)
                      ...+|...|++|+|+| ++++||+|+.||.|+|||+.+++.  ...+.+|...|.+++|+| ++++|++++.||+|++||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            4457888999999999 467899999999999999987653  344568999999999998 678999999999999999


Q ss_pred             cCCCEEEEEEeC--CCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCC-EEEEEec
Q 020798          144 VKTGKCLKVLPA--HSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK-FILVGTL  220 (321)
Q Consensus       144 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~  220 (321)
                      ++++........  +...+.+++|+|++.+|++++.||.|++||++.. .+..+ ..+...|..++|+|++. ++++++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~  271 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL-RMHKKKVTHVALNPCCDWFLATASV  271 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS-BCCSSCEEEEEECTTCSSEEEEEET
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE-ecccceEEeeeecCCCceEEEEecC
Confidence            987654443333  3345788999999999999999999999998754 33333 35667899999999876 6778999


Q ss_pred             CCeEEEEeCCCCcEEEEE---eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCC------CeE
Q 020798          221 DNTLRLWNYSTGKILKTY---TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD------PVI  291 (321)
Q Consensus       221 d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~------~v~  291 (321)
                      |+.|++||+++.+....+   .+|...+.+   ..+.+++.+|++++.||.|++||+.+++....+..|..      .+.
T Consensus       272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~---~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  348 (435)
T 4e54_B          272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNA---ACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI  348 (435)
T ss_dssp             TSBCCEEETTTCCSSSCCSBCCBCSSCEEE---CCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCC
T ss_pred             cceeeEEecccccccceEEEeeeccccccc---eeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeE
Confidence            999999999876543332   345554433   33457899999999999999999999887776666542      234


Q ss_pred             EEEecCCCceEEEEeec----------CCccEEEccccc
Q 020798          292 SVASHPTENIIASGALD----------NDRTVKIWTQEK  320 (321)
Q Consensus       292 ~~~~~p~~~~l~s~~~d----------~~~~i~iw~~~~  320 (321)
                      .+.|+|++..+++++.+          +++.|++||.+.
T Consensus       349 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~  387 (435)
T 4e54_B          349 KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS  387 (435)
T ss_dssp             BCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred             EEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence            56788888887777532          235799999754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.5e-34  Score=238.81  Aligned_cols=252  Identities=18%  Similarity=0.317  Sum_probs=201.0

Q ss_pred             CCCcccccccccccEEEEEECCC---CCEEEEEeCCCcEEEEecCC-ccee-eeeecCcccEEEEEECCCCCEEEEeeCC
Q 020798           62 PPSPLQKFTGHEQGVSDLVFSSD---SRFLVSASDDKTIRLWDVPT-ATCL-KTLIGHTNYVFCVNFNPQSNMIVSGAFD  136 (321)
Q Consensus        62 ~~~~~~~~~~h~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d  136 (321)
                      +...+..+.+|...|.+++|+|+   |++|++|+.||.|++||+.+ +... ..+.+|...|.+++|+|++++|++++.|
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence            44556778899999999999999   59999999999999999987 4444 6778899999999999999999999999


Q ss_pred             CcEEEEecCCCEEEEEEeCCCCCeeEEEE--ccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCE
Q 020798          137 ETVRIWDVKTGKCLKVLPAHSDPVTAVDF--NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKF  214 (321)
Q Consensus       137 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  214 (321)
                      |.|++||+++++... +..|..+|.+++|  +|++..+++++.|+.|++||+++++....+...  ..+..+.+  ....
T Consensus       108 g~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~--~~~~  182 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--ERCYCADV--IYPM  182 (368)
T ss_dssp             SEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS--SCEEEEEE--ETTE
T ss_pred             CcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC--CCceEEEe--cCCe
Confidence            999999999988766 4568999999999  899999999999999999999988776665432  23444444  4558


Q ss_pred             EEEEecCCeEEEEeCCCCcEEEEEec--cCCceeEEEeEEEec-CCeEEEEeCCCCeEEEEEcccc---eEEEEecCCCC
Q 020798          215 ILVGTLDNTLRLWNYSTGKILKTYTG--HTNSKYCISSTFSVT-NGKYIVSGSEDSCVYLWELQSR---KVVQKLEGHTD  288 (321)
Q Consensus       215 l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~  288 (321)
                      +++++.++.+.+|++...........  ......++....... ....+++++.||.|++||+...   +.+..+.+|..
T Consensus       183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  262 (368)
T 3mmy_A          183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS  262 (368)
T ss_dssp             EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred             eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence            88999999999999987654433322  122223333222111 1234999999999999999876   45667777765


Q ss_pred             ------------CeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          289 ------------PVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       289 ------------~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                                  +|.+++|+|++++|++|+.  |+.|++||.+.
T Consensus       263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--dg~i~iwd~~~  304 (368)
T 3mmy_A          263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGS--DGRFSFWDKDA  304 (368)
T ss_dssp             C----CCCEEECCEEEEEECTTTCCEEEEET--TSCEEEEETTT
T ss_pred             ccccccccccccceEEEEEecCCCEEEEEcc--CCeEEEEECCC
Confidence                        7999999999999999984  58999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.5e-34  Score=243.22  Aligned_cols=283  Identities=21%  Similarity=0.383  Sum_probs=198.5

Q ss_pred             cCCcccEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC---CEEEEEeCCC
Q 020798           20 NGHLRAISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS---RFLVSASDDK   95 (321)
Q Consensus        20 ~~h~~~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~---~~l~~~~~d~   95 (321)
                      .+|...|.+++|+| ++++|++++.|+.+++|++...        .....+ .+...+.++.+++.+   .++++++.|+
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL--------QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGP  166 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT--------EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC--------ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCC
Confidence            46999999999999 7889999999999999987642        222223 367789999999854   4999999999


Q ss_pred             cEEEEecCCcceeeeeecCcccEEEEEECCCCC-EEEEeeCCCcEEEEecCCCE-EEEEE---------------eCCCC
Q 020798           96 TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGK-CLKVL---------------PAHSD  158 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~-~~~~~---------------~~~~~  158 (321)
                      .|++||+.+++....+.+|...+.+++|+|++. .|++++.||.|++||++++. ....+               ..|..
T Consensus       167 ~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (408)
T 4a11_B          167 KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG  246 (408)
T ss_dssp             SEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred             eEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence            999999999988888999999999999999998 58899999999999998764 22332               46788


Q ss_pred             CeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC----CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcE
Q 020798          159 PVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD----ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKI  234 (321)
Q Consensus       159 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~  234 (321)
                      .|.+++|+|+++.+++++.|+.+++||+++++........    .............+..+++++.++.|++||+.+++.
T Consensus       247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~  326 (408)
T 4a11_B          247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ  326 (408)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence            9999999999999999999999999999987654332211    111122222333455677778899999999999999


Q ss_pred             EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCC-ceEEEEeecCCccE
Q 020798          235 LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE-NIIASGALDNDRTV  313 (321)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~d~~~~i  313 (321)
                      +..+.+|...+.++   ...+++++|++|+.||.|++||+.+.+.+.....+.   ....+.|.. ..+.+.+  .++.+
T Consensus       327 ~~~~~~~~~~v~~~---~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~  398 (408)
T 4a11_B          327 ITMLKGHYKTVDCC---VFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSD--EEGGT  398 (408)
T ss_dssp             EEEECCCSSCEEEE---EEETTTTEEEEEETTSCEEEEEECC--------------------------------------
T ss_pred             eeeeccCCCeEEEE---EEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccC--ccCce
Confidence            99999888776554   334789999999999999999999988765544332   223334433 3333333  46889


Q ss_pred             EEcccc
Q 020798          314 KIWTQE  319 (321)
Q Consensus       314 ~iw~~~  319 (321)
                      ++|+..
T Consensus       399 ~~W~~~  404 (408)
T 4a11_B          399 SAWSHP  404 (408)
T ss_dssp             ------
T ss_pred             eecCCc
Confidence            999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.5e-34  Score=243.81  Aligned_cols=252  Identities=12%  Similarity=0.171  Sum_probs=191.1

Q ss_pred             eccCCcccEEEEEECCCCCEEEE-----------ecCCceEEEeeccccCCCCCC-CCCcccccccccccEEEEEECCCC
Q 020798           18 TLNGHLRAISSVKFSHDGRLLAS-----------SSADKTLLTYSLSSISNSDST-PPSPLQKFTGHEQGVSDLVFSSDS   85 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~-----------~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~~   85 (321)
                      .|.+|...|.+++++  ++.+++           ++.|+.+++|++......... ..........+...+.+++|+|||
T Consensus        68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            467888889888765  445554           456788999987543210000 000111223455678999999999


Q ss_pred             CEEEEE--eCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE--EEeCCCCCee
Q 020798           86 RFLVSA--SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK--VLPAHSDPVT  161 (321)
Q Consensus        86 ~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~  161 (321)
                      ++++++  +.|+.|++||+.+++++..+. |...|.+++|+|+++++++++.+ .+.+|+..+++...  ....|...+.
T Consensus       146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (365)
T 4h5i_A          146 TVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLS  223 (365)
T ss_dssp             SCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred             CEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEE
Confidence            998754  478999999999998877765 77789999999999999998855 46666666665443  3346778899


Q ss_pred             EEEEccCCCEEEEEeCCC----eEEEEeCCCCcee---eeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcE
Q 020798          162 AVDFNRDGTMIVTSSYDG----LCRIWDASTGHCM---KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKI  234 (321)
Q Consensus       162 ~~~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~  234 (321)
                      +++|+|++..+++++.++    .+++|++......   ......+...|.+++|+|+|++|++|+.|+.|+|||++++++
T Consensus       224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~  303 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM  303 (365)
T ss_dssp             EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence            999999999999998877    6888988765432   122345567799999999999999999999999999999999


Q ss_pred             EEEE-eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          235 LKTY-TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       235 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      +..+ .+|...+.++.   +.|||++||+|+.|++|+|||+..
T Consensus       304 ~~~~~~gH~~~V~~v~---fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          304 SKIFKQAHSFAITEVT---ISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEETTSSSSCEEEEE---ECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEEecCcccCCEEEEE---ECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9886 67887765543   358999999999999999999954

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2e-33  Score=227.65  Aligned_cols=251  Identities=14%  Similarity=0.145  Sum_probs=184.7

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC----CCEE
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD----SRFL   88 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~----~~~l   88 (321)
                      +.+.+++++|..+|..+.|.||-.-|+...         +.                .-+...|+.++++|+    ++.+
T Consensus        76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~----------------~~~~~~v~sla~spd~~~~~~~l  130 (356)
T 2w18_A           76 WEKLYTWHFAEVPVLQIVPVPDVYNLVCVA---------LG----------------NLEIREIRALFCSSDDESEKQVL  130 (356)
T ss_dssp             EEEEEEEECCSSCEEEECCCTTCCSCEEEE---------EC----------------SSSEEEEEEECC------CCEEE
T ss_pred             ceeeEEEeccCceeEEEEEcCcccceeeee---------ec----------------cccccceEEEEECCCccccccEE
Confidence            356788899999999999999764333211         11                013467899999999    8889


Q ss_pred             EEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEee--CCCcEEEEecC-CCEEEEEEeCCCCCeeEEEE
Q 020798           89 VSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA--FDETVRIWDVK-TGKCLKVLPAHSDPVTAVDF  165 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~  165 (321)
                      ++++.+  +++|++.+                      ++.+.+++  .|+.|++|++. +++.+..+..|...+..++|
T Consensus       131 ~s~g~~--~~v~~l~~----------------------g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~f  186 (356)
T 2w18_A          131 LKSGNI--KAVLGLTK----------------------RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTF  186 (356)
T ss_dssp             EEEEEE--EEEEEETT----------------------TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEE
T ss_pred             EeCCCe--EEEEecCC----------------------CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEe
Confidence            887743  66775433                      33333322  57788888873 36666677789999999999


Q ss_pred             cc---CCCEEEEEeCCCeEEEEeCCCCceeeeeccCC--CCCeEEEEEccCCCEE------------EEEecCCeEEEEe
Q 020798          166 NR---DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDE--NPPVSFVKFSPNGKFI------------LVGTLDNTLRLWN  228 (321)
Q Consensus       166 ~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~l------------~~~~~d~~i~i~d  228 (321)
                      +|   ++..|++++.|++|++||++++++++.+...+  ...+..++|+|+|+++            ++|+.|++|++||
T Consensus       187 s~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          187 AEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             EEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred             eccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence            99   77999999999999999999999888875432  2356778999999887            4577889999999


Q ss_pred             CCCCcEEEEEe-----ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeE-EEEecCCCceE
Q 020798          229 YSTGKILKTYT-----GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVI-SVASHPTENII  302 (321)
Q Consensus       229 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l  302 (321)
                      ..+++.+..+.     +|...  .+...   .++.++++|+.|++|+|||+.+++.+..+.+|...+. .++|+|+|++|
T Consensus       267 ~~tgk~l~v~~~~~p~Gh~~~--~lsg~---~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L  341 (356)
T 2w18_A          267 PKTTLSVGVMLYCLPPGQAGR--FLEGD---VKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL  341 (356)
T ss_dssp             TTTTEEEEEEEECCCTTCCCC--EEEEE---EETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred             CCCCEEEEEEEeeccCCCcce--eEccc---cCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence            99998877652     44332  22221   2367899999999999999999999999999987765 58999999999


Q ss_pred             EEEeecCCccEEEcccc
Q 020798          303 ASGALDNDRTVKIWTQE  319 (321)
Q Consensus       303 ~s~~~d~~~~i~iw~~~  319 (321)
                      ++|+.  |++|||||..
T Consensus       342 aSGS~--D~TIklWd~~  356 (356)
T 2w18_A          342 LAGQK--DGNIFVYHYS  356 (356)
T ss_dssp             EEECT--TSCEEEEEEC
T ss_pred             EEEEC--CCcEEEecCC
Confidence            99994  5899999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=7.4e-32  Score=229.62  Aligned_cols=265  Identities=12%  Similarity=0.137  Sum_probs=211.7

Q ss_pred             CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEE-EEEeCCCcEEEEecCCcceeeeeecC
Q 020798           36 RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL-VSASDDKTIRLWDVPTATCLKTLIGH  114 (321)
Q Consensus        36 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~  114 (321)
                      .++++++.|+.|++|++...        ..+..+..| ..+.+++|+|+++++ ++++.|+.|++||+.+++....+..+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~--------~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~   73 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN--------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG   73 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT--------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             EEEEEcCCCCEEEEEECCCC--------eEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC
Confidence            46788999999999987532        234445555 458999999999977 56778999999999999887777655


Q ss_pred             cccEEEEEECCCCCEEE-EeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE-EEEeCCCeEEEEeCCCCcee
Q 020798          115 TNYVFCVNFNPQSNMIV-SGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI-VTSSYDGLCRIWDASTGHCM  192 (321)
Q Consensus       115 ~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~  192 (321)
                      . .+.+++|+|++++++ +++.++.|++||+.+++....+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++..
T Consensus        74 ~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           74 S-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             C-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            5 899999999999875 4556799999999999988877654 468999999999977 67788999999999988776


Q ss_pred             eeeccCCCCCeEEEEEccCCCEE-EEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeC---CCCe
Q 020798          193 KTLIDDENPPVSFVKFSPNGKFI-LVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS---EDSC  268 (321)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~g~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~  268 (321)
                      ..+..  ...+..++|+|+++++ +++..++.|++||+++++.+..+..+. ..   ......++++++++++   .++.
T Consensus       152 ~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~---~~~~~~~~g~~l~~~~~~~~~~~  225 (391)
T 1l0q_A          152 NTVSV--GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-AP---SGIAVNPEGTKAYVTNVDKYFNT  225 (391)
T ss_dssp             EEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-EE---EEEEECTTSSEEEEEEECSSCCE
T ss_pred             EEEec--CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC-Cc---cceEECCCCCEEEEEecCcCCCc
Confidence            66543  3456889999999988 456678999999999998887775432 22   2233457888888777   6899


Q ss_pred             EEEEEcccceEEEEecCCCCCeEEEEecCCCceE-EEEeecCCccEEEccccc
Q 020798          269 VYLWELQSRKVVQKLEGHTDPVISVASHPTENII-ASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       269 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~~~d~~~~i~iw~~~~  320 (321)
                      |++||+.+++.+..+..|. .+.+++|+|++++| ++++  .|+.|++||.+.
T Consensus       226 v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~--~d~~v~v~d~~~  275 (391)
T 1l0q_A          226 VSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALS--FXNTVSVIDTAT  275 (391)
T ss_dssp             EEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEET--TTTEEEEEETTT
T ss_pred             EEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcC--CCCEEEEEECCC
Confidence            9999999999888888765 47899999999887 4544  468999999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-34  Score=238.44  Aligned_cols=231  Identities=10%  Similarity=0.070  Sum_probs=183.3

Q ss_pred             EECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC---------CCEEE
Q 020798           80 VFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK---------TGKCL  150 (321)
Q Consensus        80 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~---------~~~~~  150 (321)
                      .+.+++++|++|+.||.|++||+.+++.+..+.  ...+.++.++|+   +++++.|+.|++|+..         +++.+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            344678899999999999999999988776665  456777788887   9999999999999765         44434


Q ss_pred             EEEe-CCCCCeeEEEEcc--CCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 020798          151 KVLP-AHSDPVTAVDFNR--DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW  227 (321)
Q Consensus       151 ~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~  227 (321)
                      ..+. .|..+|.+++|+|  +++++++++.||+|++||+++++........+...+.+++|+|+|.+|++|+.|+.|++|
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw  197 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY  197 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence            4333 5678899999999  999999999999999999999887655544555568999999999999999999999999


Q ss_pred             eCCCCcEE-EEEec-cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC---CCCCeE--EEEecCCCc
Q 020798          228 NYSTGKIL-KTYTG-HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG---HTDPVI--SVASHPTEN  300 (321)
Q Consensus       228 d~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---h~~~v~--~~~~~p~~~  300 (321)
                      |+++++.+ ..+.. |...+.++   .+.+++.+|++++ ++.|++||+++.+.+..+..   |..++.  +++|+|+++
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~l---~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  273 (343)
T 3lrv_A          198 NLSSPDQASSRFPVDEEAKIKEV---KFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK  273 (343)
T ss_dssp             ESSCTTSCCEECCCCTTSCEEEE---EECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred             ECCCCCCCccEEeccCCCCEEEE---EEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence            99999877 77777 77665444   3357899999999 55999999998876554443   444444  699999999


Q ss_pred             eEEEEeecCCccEEEccccc
Q 020798          301 IIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       301 ~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +|++++. +|+.|++|+.++
T Consensus       274 ~l~~~s~-~d~~i~v~~~~~  292 (343)
T 3lrv_A          274 NMIAYSN-ESNSLTIYKFDK  292 (343)
T ss_dssp             EEEEEET-TTTEEEEEEECT
T ss_pred             EEEEecC-CCCcEEEEEEcc
Confidence            9999874 257899998754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.9e-32  Score=224.04  Aligned_cols=244  Identities=25%  Similarity=0.426  Sum_probs=202.7

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEE
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIR   98 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~   98 (321)
                      +.+|...|++++|+|+|++|++|+.|+.|++|++..        ...+..+.+|...+.++.+  +++.+++++.++.++
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~--------~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~  132 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--------QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIH  132 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT--------TEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC--------ceeEEEecCccceEEEeec--CCCEEEEEecCCceE
Confidence            457888999999999999999999999999998754        2356677889888877655  567899999999999


Q ss_pred             EEecCCc-ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEE----EEEEeCCCCCeeEEEEccCCCEE-
Q 020798           99 LWDVPTA-TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKC----LKVLPAHSDPVTAVDFNRDGTMI-  172 (321)
Q Consensus        99 iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l-  172 (321)
                      +|+.... .....+.+|...+..+.+.++++++++++.|+.|++||+++++.    ......+...+..++++|++..+ 
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  212 (318)
T 4ggc_A          133 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL  212 (318)
T ss_dssp             EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEE
T ss_pred             eeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEE
Confidence            9998765 44566788999999999999999999999999999999987642    33455678889999999976533 


Q ss_pred             --EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEeCCCCcEEEEEeccCCceeEE
Q 020798          173 --VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT--LDNTLRLWNYSTGKILKTYTGHTNSKYCI  248 (321)
Q Consensus       173 --~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  248 (321)
                        ++++.++.|++||.+.........  ....+..+.++|+++.+++++  .|+.|++||+++++++..+.+|...+.++
T Consensus       213 ~~~~~~~~~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l  290 (318)
T 4ggc_A          213 ATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL  290 (318)
T ss_dssp             EEEECTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EEEecCCCCEEEEEeccccccccccc--ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence              355678999999998876655442  345688899999999888765  78999999999999999999998876554


Q ss_pred             EeEEEecCCeEEEEeCCCCeEEEEEcccc
Q 020798          249 SSTFSVTNGKYIVSGSEDSCVYLWELQSR  277 (321)
Q Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (321)
                      .   ..+++++|++|+.||+|+|||+...
T Consensus       291 ~---~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          291 T---MSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             E---ECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             E---EcCCCCEEEEEecCCeEEEEECCCC
Confidence            3   3578999999999999999998654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.5e-32  Score=230.82  Aligned_cols=238  Identities=14%  Similarity=0.189  Sum_probs=183.7

Q ss_pred             cccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEE-EEeeCCCcEEEEe
Q 020798           65 PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWD  143 (321)
Q Consensus        65 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd  143 (321)
                      ++..+..|...|.+++|+|+|++|++|+.++ +++|++.+.+.......  ..+..+++.++++.+ ++++.|+.|++||
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWD   87 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence            4556678999999999999999999888775 78999988765544322  246778888888877 5678889999999


Q ss_pred             cCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCC-ceeeeeccCCCCCeEEEEEccCCCEEEE--Eec
Q 020798          144 VKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG-HCMKTLIDDENPPVSFVKFSPNGKFILV--GTL  220 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~--~~~  220 (321)
                      .++++++..+. +..+|.+++++++.  ++++ .++.+++||+.++ +.+..+..    +...+++++  .++++  ++.
T Consensus        88 ~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~  157 (355)
T 3vu4_A           88 DVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFN  157 (355)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSC
T ss_pred             CCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCc
Confidence            99999888876 56789999998764  3333 4789999999887 54444322    344566777  56666  578


Q ss_pred             CCeEEEEeCCCCc---------------E-EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCe-EEEEEcccceEEEEe
Q 020798          221 DNTLRLWNYSTGK---------------I-LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSC-VYLWELQSRKVVQKL  283 (321)
Q Consensus       221 d~~i~i~d~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~  283 (321)
                      ||.|++||+.+++               + +..+.+|...+.++.   ..+++.+|++|+.||+ |++||+++++.+..+
T Consensus       158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~---~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR---LNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             TTCEEEEECCC------------------CCEEECCCSSCEEEEE---ECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE---ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            9999999998765               1 677888887765543   3579999999999998 999999999999999


Q ss_pred             c-C-CCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          284 E-G-HTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       284 ~-~-h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      . + |..+|.+++|+|++++|++|+.  |+.|+|||++.
T Consensus       235 ~~g~h~~~v~~~~~s~~~~~l~s~s~--d~~v~iw~~~~  271 (355)
T 3vu4_A          235 RRGLDRADVVDMKWSTDGSKLAVVSD--KWTLHVFEIFN  271 (355)
T ss_dssp             ECTTCCSCEEEEEECTTSCEEEEEET--TCEEEEEESSC
T ss_pred             EcCCCCCcEEEEEECCCCCEEEEEEC--CCEEEEEEccC
Confidence            8 5 9999999999999999999984  58999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.4e-30  Score=221.71  Aligned_cols=259  Identities=15%  Similarity=0.170  Sum_probs=205.8

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEE-EEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE-
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLL-ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS-   90 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~-   90 (321)
                      .++.+.+.+|. .+.+++|+|+|++| ++++.|+.|++|++...        ..+..+..+. .+.+++|+|++++|++ 
T Consensus        22 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--------~~~~~~~~~~-~v~~~~~spdg~~l~~~   91 (391)
T 1l0q_A           22 NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------NVIATVPAGS-SPQGVAVSPDGKQVYVT   91 (391)
T ss_dssp             TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------EEEEEEECSS-SEEEEEECTTSSEEEEE
T ss_pred             CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC--------eEEEEEECCC-CccceEECCCCCEEEEE
Confidence            34556666664 58999999999976 67779999999987532        2334444443 8999999999998764 


Q ss_pred             EeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEE-EEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCC
Q 020798           91 ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG  169 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (321)
                      ++.++.|++||+.+++....+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++....+..+ ..+..++|+|++
T Consensus        92 ~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg  169 (391)
T 1l0q_A           92 NMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDG  169 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTS
T ss_pred             ECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCC
Confidence            456799999999999877766644 467899999999977 67888999999999999988887765 456899999999


Q ss_pred             CEE-EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe---cCCeEEEEeCCCCcEEEEEeccCCce
Q 020798          170 TMI-VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT---LDNTLRLWNYSTGKILKTYTGHTNSK  245 (321)
Q Consensus       170 ~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~  245 (321)
                      +.+ ++++.++.|++||+++++....+.  ....+..++|+|+|+++++++   .++.|++||+.+++.+..+..+.. .
T Consensus       170 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~  246 (391)
T 1l0q_A          170 TKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-P  246 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-E
T ss_pred             CEEEEEeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-c
Confidence            877 567788999999999887665553  234678899999999999887   689999999999998888876543 2


Q ss_pred             eEEEeEEEecCCeEE-EEeCCCCeEEEEEcccceEEEEecCCCCC
Q 020798          246 YCISSTFSVTNGKYI-VSGSEDSCVYLWELQSRKVVQKLEGHTDP  289 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~  289 (321)
                         ......++++++ ++++.|+.|++||+.+++.+..+..|..+
T Consensus       247 ---~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          247 ---AGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP  288 (391)
T ss_dssp             ---EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             ---cEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence               222334677766 67789999999999999988888776554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=238.21  Aligned_cols=239  Identities=14%  Similarity=0.185  Sum_probs=196.4

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc---eeeeee--------------------------------------
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT---CLKTLI--------------------------------------  112 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~--------------------------------------  112 (321)
                      .++.+++|+++|++|+++ .++.|++||+.+++   .+..+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            467899999999966655 57899999998887   444333                                      


Q ss_pred             ----------------cCcccEEEEEECCCCCEE-EEeeCCCcEEEEecC--CCEEEEEEe--CCCCCeeEEEEccCCCE
Q 020798          113 ----------------GHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVK--TGKCLKVLP--AHSDPVTAVDFNRDGTM  171 (321)
Q Consensus       113 ----------------~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~  171 (321)
                                      +|...|.+++|+|++++| ++++.||.|++||+.  +++....+.  .|...|.+++|+|++..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                            233369999999999996 889999999999998  777777665  56788999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceee---eeccCCCCCeEEEEEccC---CCEEEEEecCCeEEEEeCCCCcEEEE-EeccCCc
Q 020798          172 IVTSSYDGLCRIWDASTGHCMK---TLIDDENPPVSFVKFSPN---GKFILVGTLDNTLRLWNYSTGKILKT-YTGHTNS  244 (321)
Q Consensus       172 l~~~~~dg~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~---g~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~  244 (321)
                      |++++.+|.+++|++.++....   .....+...+.+++|+|+   +++|++++.|+.|++||+++++.+.. +.+|...
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            9999999999999998765432   122345678999999999   99999999999999999999988877 4467666


Q ss_pred             eeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC-------------------------CCCCeEEEEecCCC
Q 020798          245 KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG-------------------------HTDPVISVASHPTE  299 (321)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------------------h~~~v~~~~~~p~~  299 (321)
                      +.++.  + . ++.+|++|+.|+.|++||+.+++.+..+..                         ....|.+++|+|++
T Consensus       244 v~~~~--~-s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  319 (450)
T 2vdu_B          244 VSSIC--C-G-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL  319 (450)
T ss_dssp             EEEEE--E-C-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred             eEEEE--E-C-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence            55543  3 3 899999999999999999999988777653                         23578999999999


Q ss_pred             ceEEEEeecCCccEEEccc
Q 020798          300 NIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       300 ~~l~s~~~d~~~~i~iw~~  318 (321)
                      ++|++++. .++.|++|++
T Consensus       320 ~~l~~~~~-~d~~i~iw~~  337 (450)
T 2vdu_B          320 PFVAFFVE-ATKCIIILEM  337 (450)
T ss_dssp             SEEEEEET-TCSEEEEEEE
T ss_pred             CEEEEEEC-CCCeEEEEEe
Confidence            99999873 3689999998

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=6.8e-31  Score=226.64  Aligned_cols=287  Identities=13%  Similarity=0.127  Sum_probs=218.2

Q ss_pred             CcccEEEEE---ECCCCCEEEEecC--------------CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC
Q 020798           22 HLRAISSVK---FSHDGRLLASSSA--------------DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD   84 (321)
Q Consensus        22 h~~~v~~~~---~s~~g~~l~~~~~--------------d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~   84 (321)
                      ....+..++   |+|+++.++..+.              ++.+.+|.+...    ......+..+..+ ..+.+++|+|+
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~----~~~~~~~~~~~~~-~~~~~~~~s~~  133 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKE----GITHRFISRFKTG-FQPKSVRFIDN  133 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBT----TCSEEEEEEEECS-SCBCCCEESSS
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCC----CCcceEEEEEcCC-CCceEEEEeCC
Confidence            345778888   9998877654322              222233332210    0111223333333 44668999997


Q ss_pred             CCEEEEEeCCCcEEEEecCCcceee-----eeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCC
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLK-----TLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP  159 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  159 (321)
                      ++++++++.++.|++||+.+++...     .+.+|...+.+++|+|++..+++++.|+.|++||+++++....+..|...
T Consensus       134 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~  213 (433)
T 3bws_A          134 TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW  213 (433)
T ss_dssp             SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS
T ss_pred             CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC
Confidence            7788888889999999999888765     34578889999999999999999999999999999999888888888999


Q ss_pred             eeEEEEccCCCEEEEE-eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe--------cCCeEEEEeCC
Q 020798          160 VTAVDFNRDGTMIVTS-SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT--------LDNTLRLWNYS  230 (321)
Q Consensus       160 v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~--------~d~~i~i~d~~  230 (321)
                      +.+++|+|+++.++++ +.++.|++||+++++....+..  ...+..++|+|+|+++++++        .|+.|++||+.
T Consensus       214 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~  291 (433)
T 3bws_A          214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD  291 (433)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred             eeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence            9999999999987554 4799999999998877655432  34588999999999999887        48899999999


Q ss_pred             CCcEEEEEeccCCceeEEEeEEEecCCe-EEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecC
Q 020798          231 TGKILKTYTGHTNSKYCISSTFSVTNGK-YIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDN  309 (321)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~  309 (321)
                      +++.+..+.. ......   ....++++ .+++++.++.|++||+.+++.+..+. +...+.+++|+|++++|++++.+.
T Consensus       292 ~~~~~~~~~~-~~~~~~---~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~  366 (433)
T 3bws_A          292 KEKLIDTIGP-PGNKRH---IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGP  366 (433)
T ss_dssp             TTEEEEEEEE-EECEEE---EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCC
T ss_pred             CCcEEeeccC-CCCcce---EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCC
Confidence            9887766532 222222   23346664 66777999999999999988887776 667899999999999988887543


Q ss_pred             -------------CccEEEccccc
Q 020798          310 -------------DRTVKIWTQEK  320 (321)
Q Consensus       310 -------------~~~i~iw~~~~  320 (321)
                                   ||.|++||.+.
T Consensus       367 ~~~~~~~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          367 NHPTEGYLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             CCTTTCTTSCCSSCCEEEEEETTT
T ss_pred             CccccccccccccceEEEEEECCC
Confidence                         46999999853

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.4e-31  Score=220.59  Aligned_cols=236  Identities=17%  Similarity=0.303  Sum_probs=176.9

Q ss_pred             cccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc----ceeeeeecCcccEEEEEECC--CCCEEEEeeCCCcEE
Q 020798           67 QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA----TCLKTLIGHTNYVFCVNFNP--QSNMIVSGAFDETVR  140 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~  140 (321)
                      ..+.+|...|.+++|+|++++|++++.||.|++||+.++    +....+.+|...|.+++|+|  ++++|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            456789999999999999999999999999999999876    35566788999999999999  589999999999999


Q ss_pred             EEecCCC---------EEEEEEeCCCCCeeEEEEccC--CCEEEEEeCCCeEEEEeCCCCceeeeec------------c
Q 020798          141 IWDVKTG---------KCLKVLPAHSDPVTAVDFNRD--GTMIVTSSYDGLCRIWDASTGHCMKTLI------------D  197 (321)
Q Consensus       141 ~wd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~------------~  197 (321)
                      +||++++         +....+..|...|.+++|+|+  +..+++++.|+.|++||+++++....+.            .
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999876         567778889999999999999  9999999999999999998765433221            1


Q ss_pred             CCCCCeEEEEEccC---CCEEEEEecCCeEEEEeCCCCcE--EEEEeccCCceeEEEeEEEecCC----eEEEEeCCCCe
Q 020798          198 DENPPVSFVKFSPN---GKFILVGTLDNTLRLWNYSTGKI--LKTYTGHTNSKYCISSTFSVTNG----KYIVSGSEDSC  268 (321)
Q Consensus       198 ~~~~~~~~~~~~~~---g~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~  268 (321)
                      .+...+.++.|+|+   +.++++++.++.+.+|+...++.  +..+.+|...+.++.   ..+++    .+|++|+.||.
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~---~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS---WAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE---ECCCSSCSSEEEEEEETTSC
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE---ECCCCCCcceEEEEEcCCCe
Confidence            34557889999997   99999999999998888877765  556667766654443   34666    89999999999


Q ss_pred             EEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEE
Q 020798          269 VYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG  305 (321)
Q Consensus       269 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  305 (321)
                      |++||++.+........+...+......+....++.+
T Consensus       242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
T 3f3f_A          242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQG  278 (351)
T ss_dssp             EEEEEEEECC---------------------------
T ss_pred             EEEEeCCCCcCccccCCcccceeccCCCccccccccc
Confidence            9999998765444333333333444444444443333

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.1e-32  Score=231.38  Aligned_cols=247  Identities=16%  Similarity=0.132  Sum_probs=174.5

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC--------CCCEEEEEe
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS--------DSRFLVSAS   92 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--------~~~~l~~~~   92 (321)
                      .|...+....+++++++||+++.|++|++|+......   ....++..+.+|.+.|.+++|+|        ++++|++|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~---~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETI---ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEE---EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcc---ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence            3444455555667788999999999999999764321   11123456789999999999987        789999999


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCC-EEEEeeCCCcEEEEecCCCEEEEE-------------------
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGKCLKV-------------------  152 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~-------------------  152 (321)
                      .|++|+|||+.++.....+..|...+.+++|+|++. +|++++.|++|++||+++++....                   
T Consensus       164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~  243 (393)
T 4gq1_A          164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP  243 (393)
T ss_dssp             TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred             CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence            999999999988887888888999999999999874 799999999999999987654322                   


Q ss_pred             ------EeCCCCCeeEEEEc-cCCCEEEEEeCCCeEEEEeCCCCceeeeeccC------------------CCCCeEEEE
Q 020798          153 ------LPAHSDPVTAVDFN-RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD------------------ENPPVSFVK  207 (321)
Q Consensus       153 ------~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------------------~~~~~~~~~  207 (321)
                            ...|...+.++.|. |++..+++++.|+++++||+..++....+...                  ....+. ..
T Consensus       244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  322 (393)
T 4gq1_A          244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG-AC  322 (393)
T ss_dssp             GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC-CE
T ss_pred             ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee-EE
Confidence                  12466778888886 79999999999999999999765543322110                  111111 23


Q ss_pred             Ecc--CCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          208 FSP--NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       208 ~~~--~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      ++|  ++.++++|+.|+.|++||+.+++.+..+..|...+..   ..+.++|++||+++.+| +.+|.+.
T Consensus       323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~s---vafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVD---FCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEE---EEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEE---EEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            333  3445667778999999999999888877777766443   33458999999998766 6666653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.98  E-value=2.5e-29  Score=221.90  Aligned_cols=279  Identities=12%  Similarity=0.127  Sum_probs=216.7

Q ss_pred             EECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec--CCcce
Q 020798           30 KFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV--PTATC  107 (321)
Q Consensus        30 ~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~--~~~~~  107 (321)
                      +|+|++.++++++.|+.|.+||...        ...+..+..+.. +..++|+|+|++|++++.|+.|.+||+  .++++
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t--------~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDS--------KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK  214 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTT--------CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCC--------ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence            4899999999999999999998653        223445552222 889999999999999999999999999  78887


Q ss_pred             eeeeecCcccEEEEEECC----CCCEEEEee-CCCcEEEEecCCCEEEEEEeCC-----------CCCeeEEEEccCCCE
Q 020798          108 LKTLIGHTNYVFCVNFNP----QSNMIVSGA-FDETVRIWDVKTGKCLKVLPAH-----------SDPVTAVDFNRDGTM  171 (321)
Q Consensus       108 ~~~~~~~~~~v~~~~~~~----~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~  171 (321)
                      +..+. +...+..++|+|    +++++++++ .+++|.+||..+++++..+..+           ...+..+.++|++..
T Consensus       215 ~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~  293 (543)
T 1nir_A          215 VAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE  293 (543)
T ss_dssp             EEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred             EEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence            77776 455678999999    999998887 4899999999999888877642           236889999998765


Q ss_pred             -EEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcEEEEEeccCCce--eE
Q 020798          172 -IVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKILKTYTGHTNSK--YC  247 (321)
Q Consensus       172 -l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~--~~  247 (321)
                       +++...++.|.+||..+.+............+..+.|+|+|+++++++ .+++|.+||+.+++++..+.....+.  ..
T Consensus       294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g  373 (543)
T 1nir_A          294 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG  373 (543)
T ss_dssp             EEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTC
T ss_pred             EEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCC
Confidence             456667899999999876543311112344566789999999877665 58899999999999988886422111  11


Q ss_pred             EEeEEEecC-CeEEEEeC-CCCeEEEEEccc-------ceEEEEecCCCCCeEEEEecCCCceEEEEee---c--CCccE
Q 020798          248 ISSTFSVTN-GKYIVSGS-EDSCVYLWELQS-------RKVVQKLEGHTDPVISVASHPTENIIASGAL---D--NDRTV  313 (321)
Q Consensus       248 ~~~~~~~~~-~~~l~~~~-~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~---d--~~~~i  313 (321)
                      ..  +..++ +..++++. .|++|.+||+.+       .++++.+.+|...+..+++||++++|.+++.   |  .+++|
T Consensus       374 ~~--~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v  451 (543)
T 1nir_A          374 AN--FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV  451 (543)
T ss_dssp             EE--EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCE
T ss_pred             cc--cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceE
Confidence            21  22344 77777775 689999999988       8899999999988999999999999999761   1  14689


Q ss_pred             EEccccc
Q 020798          314 KIWTQEK  320 (321)
Q Consensus       314 ~iw~~~~  320 (321)
                      .+||.+.
T Consensus       452 ~v~d~~~  458 (543)
T 1nir_A          452 AVFDLKN  458 (543)
T ss_dssp             EEEETTC
T ss_pred             EEEECCC
Confidence            9999863

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=9.2e-30  Score=206.27  Aligned_cols=218  Identities=13%  Similarity=0.194  Sum_probs=164.7

Q ss_pred             CCcccEEEEEECCC----CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe--CC
Q 020798           21 GHLRAISSVKFSHD----GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS--DD   94 (321)
Q Consensus        21 ~h~~~v~~~~~s~~----g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~--~d   94 (321)
                      -|.+.|.+++|+||    ++++++++.+  +.+|++                              ++++++.+++  .|
T Consensus       109 ~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l------------------------------~~g~lv~ss~~g~d  156 (356)
T 2w18_A          109 LEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL------------------------------TKRRLVSSSGTLSD  156 (356)
T ss_dssp             SSEEEEEEECC------CCEEEEEEEEE--EEEEEE------------------------------TTTEEEEEESSSTT
T ss_pred             ccccceEEEEECCCccccccEEEeCCCe--EEEEec------------------------------CCCcEEEecccCCC
Confidence            36779999999999    9999997733  555532                              3555555533  58


Q ss_pred             CcEEEEec-CCcceeeeeecCcccEEEEEECC---CCCEEEEeeCCCcEEEEecCCCEEEEEEeCCC---CCeeEEEEcc
Q 020798           95 KTIRLWDV-PTATCLKTLIGHTNYVFCVNFNP---QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHS---DPVTAVDFNR  167 (321)
Q Consensus        95 ~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---~~v~~~~~~~  167 (321)
                      +.|++|++ ++++.+..+.+|...+..++|+|   ++..|++++.|++|++||+++++++..+..|.   ..+.+++|+|
T Consensus       157 ~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp  236 (356)
T 2w18_A          157 QQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE  236 (356)
T ss_dssp             CEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE
T ss_pred             CcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC
Confidence            88999998 44777777888999999999999   77999999999999999999999999987654   3567779999


Q ss_pred             CCCEE------------EEEeCCCeEEEEeCCCCceeeeec----cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 020798          168 DGTMI------------VTSSYDGLCRIWDASTGHCMKTLI----DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST  231 (321)
Q Consensus       168 ~~~~l------------~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~  231 (321)
                      ++..+            ++|+.|+++++||..+++.+..+.    ..+...  .+..+.++.++++++.|++|+|||+.+
T Consensus       237 dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~--~lsg~~sg~~lASgS~DgTIkIWDl~t  314 (356)
T 2w18_A          237 MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR--FLEGDVKDHCAAAILTSGTIAIWDLLL  314 (356)
T ss_dssp             TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC--EEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce--eEccccCCCEEEEEcCCCcEEEEECCC
Confidence            99876            567789999999999988765432    222222  233344578899999999999999999


Q ss_pred             CcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          232 GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      ++.+..+.+|......  ...+.|||++|++|+.|++|+|||+
T Consensus       315 Gk~l~tL~gH~~~vvs--~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          315 GQCTALLPPVSDQHWS--FVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CSEEEEECCC--CCCC--EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CcEEEEecCCCCCeEE--EEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999888665432  2234579999999999999999996

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=7.7e-28  Score=212.36  Aligned_cols=292  Identities=11%  Similarity=0.102  Sum_probs=219.2

Q ss_pred             eeeecc-CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECC----CCCEEE
Q 020798           15 LTQTLN-GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSS----DSRFLV   89 (321)
Q Consensus        15 ~~~~~~-~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~----~~~~l~   89 (321)
                      +...+. +|.  +..++|+|||++|++++.|+.|.+||+..      .....+..+. +...+..++|+|    +|++++
T Consensus       171 ~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~------~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~  241 (543)
T 1nir_A          171 IVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWA------KEPTKVAEIK-IGIEARSVESSKFKGYEDRYTI  241 (543)
T ss_dssp             EEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTS------SSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEE
T ss_pred             EEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcC------CCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEE
Confidence            445555 443  88999999999999999999999999831      1122344444 345689999999    999999


Q ss_pred             EEe-CCCcEEEEecCCcceeeeeecC----------c-ccEEEEEECCCCCE-EEEeeCCCcEEEEecCCCEEEE--EEe
Q 020798           90 SAS-DDKTIRLWDVPTATCLKTLIGH----------T-NYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGKCLK--VLP  154 (321)
Q Consensus        90 ~~~-~d~~i~iwd~~~~~~~~~~~~~----------~-~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~--~~~  154 (321)
                      +++ .+++|.+||..+.+++..+..+          . ..+..+.++|++.. +++...++.|.+||..+.+...  .+.
T Consensus       242 v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~  321 (543)
T 1nir_A          242 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG  321 (543)
T ss_dssp             EEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred             EEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence            887 4899999999999887776542          2 26889999998765 5666788999999998765333  343


Q ss_pred             CCCCCeeEEEEccCCCEEEEEe-CCCeEEEEeCCCCceeeeeccC---CCCCeEEEEEccC-CCEEEEEe-cCCeEEEEe
Q 020798          155 AHSDPVTAVDFNRDGTMIVTSS-YDGLCRIWDASTGHCMKTLIDD---ENPPVSFVKFSPN-GKFILVGT-LDNTLRLWN  228 (321)
Q Consensus       155 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~-g~~l~~~~-~d~~i~i~d  228 (321)
                       +...+..++|+|+++++++++ .+++|.+||+.++++...+...   +......+ ++|+ |..++++. .|++|.+||
T Consensus       322 -~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d  399 (543)
T 1nir_A          322 -AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIG  399 (543)
T ss_dssp             -CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred             -cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEE
Confidence             456678899999999776654 6889999999999877665432   22122222 4676 55566654 579999999


Q ss_pred             CCC-------CcEEEEEeccCCceeEEEeEEEecCCeEEEEeC-------CCCeEEEEEcccceEE-EEe--------cC
Q 020798          229 YST-------GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS-------EDSCVYLWELQSRKVV-QKL--------EG  285 (321)
Q Consensus       229 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~~~-~~~--------~~  285 (321)
                      +.+       .+.++.+..+......+.   ..+++++|++++       .+++|.|||+.+.+.. ..+        ..
T Consensus       400 ~~~~~~~~~~~~~v~~l~~~g~~~~~v~---~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~  476 (543)
T 1nir_A          400 TDPKNHPQYAWKKVAELQGQGGGSLFIK---THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE  476 (543)
T ss_dssp             CCTTTCTTTBTSEEEEEECSCSCCCCEE---CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred             eCCCCCchhcCeEEEEEEcCCCCceEEE---cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCC
Confidence            988       889999988765544433   358999999987       2679999999988765 433        35


Q ss_pred             CCCCeEEEEecCCCceEEEEee---cCCccEEEccccc
Q 020798          286 HTDPVISVASHPTENIIASGAL---DNDRTVKIWTQEK  320 (321)
Q Consensus       286 h~~~v~~~~~~p~~~~l~s~~~---d~~~~i~iw~~~~  320 (321)
                      +...+..++|+|+|+.+..+..   +.++.|.|||.+.
T Consensus       477 ~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          477 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             SCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             CCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence            6778999999999999887643   3468999999763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=9e-29  Score=211.99  Aligned_cols=265  Identities=11%  Similarity=0.095  Sum_probs=204.8

Q ss_pred             eeccCCcccEEEEEECC--------------CCCEEEEecCC------ceEEEeeccccCCCCCCCCCcccccccccccE
Q 020798           17 QTLNGHLRAISSVKFSH--------------DGRLLASSSAD------KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGV   76 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~--------------~g~~l~~~~~d------~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i   76 (321)
                      ..+.+|...+..+++++              .+..++.++.+      +.|++||+..         .....+.+|...+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g---------~~~~~l~~~~~~v  181 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG---------YNQFVVHRSPQPL  181 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS---------CSCEEEEEESSCE
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC---------CCCEEEeCCCCcc
Confidence            45778888887777765              15666666554      7999998753         1245677889999


Q ss_pred             EEEEECCCCCEEEEEeCCC---cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCCCc--EEEEecCCCEEE
Q 020798           77 SDLVFSSDSRFLVSASDDK---TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFDET--VRIWDVKTGKCL  150 (321)
Q Consensus        77 ~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~~wd~~~~~~~  150 (321)
                      .+++|+|+|++|++++.++   .|++||+.+++.. .+..|...+.+++|+|+|+.|+ +++.++.  |++||+++++. 
T Consensus       182 ~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-  259 (415)
T 2hqs_A          182 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-  259 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-
Confidence            9999999999999998875   8999999988764 5667888899999999999887 6666554  99999988775 


Q ss_pred             EEEeCCCCCeeEEEEccCCCEEEEEeC-CC--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC---CeE
Q 020798          151 KVLPAHSDPVTAVDFNRDGTMIVTSSY-DG--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD---NTL  224 (321)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d---~~i  224 (321)
                      ..+..|...+.+++|+|+++.|++++. ++  .|.+||+.+++... + ..+...+..++|+|+|++|+.++.+   ..|
T Consensus       260 ~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i  337 (415)
T 2hqs_A          260 RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-I-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHI  337 (415)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-C-CCSSSEEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred             EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-E-ecCCCcccCeEECCCCCEEEEEECcCCceEE
Confidence            456677888999999999998888776 44  67888988776332 2 2234567789999999999988764   589


Q ss_pred             EEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC---eEEEEEcccceEEEEecCCCCCeEEEEecCCCc
Q 020798          225 RLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS---CVYLWELQSRKVVQKLEGHTDPVISVASHPTEN  300 (321)
Q Consensus       225 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~  300 (321)
                      .+||+.+++.. .+..+. ..   ....+.++|++|+.++.++   .|++||+. ++....+.+|.+.|.+++|+|...
T Consensus       338 ~~~d~~~~~~~-~l~~~~-~~---~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          338 AKQDLATGGVQ-VLSSTF-LD---ETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEETTTCCEE-ECCCSS-SC---EEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             EEEECCCCCEE-EecCCC-Cc---CCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            99999988764 344332 22   2233457899888888776   79999987 455677889999999999999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=1.8e-28  Score=225.37  Aligned_cols=285  Identities=13%  Similarity=0.125  Sum_probs=210.8

Q ss_pred             cccEEEEEECCCCCEEEEecC-Cc-----eEEEeeccccCCCCCCCCCcccccccc--c---------------------
Q 020798           23 LRAISSVKFSHDGRLLASSSA-DK-----TLLTYSLSSISNSDSTPPSPLQKFTGH--E---------------------   73 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~-d~-----~v~~~~~~~~~~~~~~~~~~~~~~~~h--~---------------------   73 (321)
                      ...+.+++|||||++|++++. |+     .|.+|++.+..        ....+..+  .                     
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ--------TRLLVDSKVVLPGTETLSDEEKARRERQRIAA  107 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC--------EEEEECGGGTC--------------------C
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc--------eeEccchhhcccccccccchhhhhhhhhhhcc
Confidence            457999999999999999988 88     89999876422        11111111  1                     


Q ss_pred             -ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc--eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEE
Q 020798           74 -QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCL  150 (321)
Q Consensus        74 -~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  150 (321)
                       ..+.+++|+|||++|++++. +.|.+||+.++.  ....+..|...+..++|+|||++|+.++ ++.|++||+.+++..
T Consensus       108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM  185 (741)
T ss_dssp             CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred             ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence             34788999999999998886 899999998872  3455667778899999999999999887 468999999988766


Q ss_pred             EEEeCCCCC----------------eeEEEEccCCCEEEEEeCCC---------------------------------eE
Q 020798          151 KVLPAHSDP----------------VTAVDFNRDGTMIVTSSYDG---------------------------------LC  181 (321)
Q Consensus       151 ~~~~~~~~~----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i  181 (321)
                      .....+...                +..++|+|||+.|++++.|+                                 .|
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            544433332                47899999999998887665                                 78


Q ss_pred             EEEeCCC-Cceeeeecc-CCCCCeEEEEEccCCCEEEEEec-----CCeEEEEeCCCCcEEEEEeccCCcee-EEEeEEE
Q 020798          182 RIWDAST-GHCMKTLID-DENPPVSFVKFSPNGKFILVGTL-----DNTLRLWNYSTGKILKTYTGHTNSKY-CISSTFS  253 (321)
Q Consensus       182 ~~~d~~~-~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~  253 (321)
                      .+||+.+ ++....... .+...+..++| |+|++|+++..     +..|.+||+.+++....+..+...-. .+....+
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  344 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF  344 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence            8999988 765433222 24456788999 99999987654     46799999999887766654432100 0111233


Q ss_pred             ecCCeEEEEeCCCCeEEEEEcc-cceEEEEecCCCCCeEEE-EecCCCceEEEEeec-CCccEEEcccc
Q 020798          254 VTNGKYIVSGSEDSCVYLWELQ-SRKVVQKLEGHTDPVISV-ASHPTENIIASGALD-NDRTVKIWTQE  319 (321)
Q Consensus       254 ~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~-~~~p~~~~l~s~~~d-~~~~i~iw~~~  319 (321)
                      .+||+++++++.||.++||.+. .++ ...+..|...|.++ .|+|+++.|+..+.+ +...++||+.+
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            4788899999999988888775 345 77788888889887 599999877655433 22389999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=2.5e-28  Score=209.21  Aligned_cols=280  Identities=12%  Similarity=0.110  Sum_probs=206.1

Q ss_pred             CcccEEEEEECCCCC-EEEEec----CCc----eEEEeec--cccCCCCCCCCCcc--cccccccccEEEEEECC-----
Q 020798           22 HLRAISSVKFSHDGR-LLASSS----ADK----TLLTYSL--SSISNSDSTPPSPL--QKFTGHEQGVSDLVFSS-----   83 (321)
Q Consensus        22 h~~~v~~~~~s~~g~-~l~~~~----~d~----~v~~~~~--~~~~~~~~~~~~~~--~~~~~h~~~i~~~~~~~-----   83 (321)
                      +...+...+|++.|. ++++|+    .+|    .+++||+  ...        ..+  ..+.+|...+..+++++     
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~~  132 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG--------TVLAQNSYKVNKQWLRYAGHTASDEVF  132 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT--------CEEEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC--------CEEeeeEEEcChhHHHHHHHHHHHHHH
Confidence            345677788888875 565775    467    8999997  432        122  34667777776666553     


Q ss_pred             ---------CCCEEEEEeCC------CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCC---cEEEEecC
Q 020798           84 ---------DSRFLVSASDD------KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE---TVRIWDVK  145 (321)
Q Consensus        84 ---------~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~  145 (321)
                               .+..++.++.+      +.|++||+... ....+.+|...+.+++|+|+|+.|++++.++   .|++||++
T Consensus       133 ~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~  211 (415)
T 2hqs_A          133 EKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA  211 (415)
T ss_dssp             HHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             HHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC
Confidence                     25556655543      79999999754 4567778899999999999999999998875   99999999


Q ss_pred             CCEEEEEEeCCCCCeeEEEEccCCCEEE-EEeCCC--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec-C
Q 020798          146 TGKCLKVLPAHSDPVTAVDFNRDGTMIV-TSSYDG--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL-D  221 (321)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-d  221 (321)
                      +++.. .+..|...+.+++|+|+|+.|+ +++.++  .|++||+++++.. .+ ..+...+..++|+|+|++|+.++. +
T Consensus       212 tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l-~~~~~~~~~~~~spdg~~l~~~s~~~  288 (415)
T 2hqs_A          212 NGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV-TDGRSNNTEPTWFPDSQNLAFTSDQA  288 (415)
T ss_dssp             TCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EC-CCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             CCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eC-cCCCCcccceEECCCCCEEEEEECCC
Confidence            88765 4566788899999999999877 565555  4999999887653 32 344567889999999999988776 4


Q ss_pred             C--eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC---CeEEEEEcccceEEEEecCCCCCeEEEEec
Q 020798          222 N--TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED---SCVYLWELQSRKVVQKLEGHTDPVISVASH  296 (321)
Q Consensus       222 ~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  296 (321)
                      +  .|.+||+.+++.. .+..+...   +......++|++|+.++.+   ..|++||+.+++. ..+..|. .+.+++|+
T Consensus       289 g~~~i~~~d~~~~~~~-~l~~~~~~---~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~s  362 (415)
T 2hqs_A          289 GRPQVYKVNINGGAPQ-RITWEGSQ---NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLA  362 (415)
T ss_dssp             SSCEEEEEETTSSCCE-ECCCSSSE---EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEEC
T ss_pred             CCcEEEEEECCCCCEE-EEecCCCc---ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEc
Confidence            4  6888898887643 33333322   2223445789988887754   5899999998776 3455554 89999999


Q ss_pred             CCCceEEEEeecCC-ccEEEcccc
Q 020798          297 PTENIIASGALDND-RTVKIWTQE  319 (321)
Q Consensus       297 p~~~~l~s~~~d~~-~~i~iw~~~  319 (321)
                      |++++|++++.|+. ..|++|+.+
T Consensus       363 pdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          363 PNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             TTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CCCCEEEEEEcCCCccEEEEEECC
Confidence            99999999886632 268898875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=1.1e-26  Score=193.96  Aligned_cols=272  Identities=11%  Similarity=0.193  Sum_probs=187.5

Q ss_pred             EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC-CcEEEEecC--Ccc--eeeee
Q 020798           37 LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD-KTIRLWDVP--TAT--CLKTL  111 (321)
Q Consensus        37 ~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d-~~i~iwd~~--~~~--~~~~~  111 (321)
                      ++++++.++.|.+|++...     .....+. ...|...+..++|+|++++|++++.+ +.|.+|++.  +++  .+..+
T Consensus         7 l~~~~~~~~~v~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~   80 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHE-----GALTLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   80 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTT-----SCEEEEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEeCCCCCeEEEEEECCC-----CcEEEee-eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence            3445578999999988520     0111122 23466778899999999998888876 899999997  444  23334


Q ss_pred             ecCcccEEEEEECCCCCEEEEee-CCCcEEEEecC---CCEEEEEEeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEeC
Q 020798          112 IGHTNYVFCVNFNPQSNMIVSGA-FDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS-YDGLCRIWDA  186 (321)
Q Consensus       112 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~  186 (321)
                      ..+. .+..++|+|+++++++++ .++.|++||+.   ..+....+.. ...+.+++|+|+++.+++++ .++.+++||+
T Consensus        81 ~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  158 (343)
T 1ri6_A           81 ALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTV  158 (343)
T ss_dssp             ECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence            4333 678899999999876665 48889999994   3334444443 34588999999999888777 8999999999


Q ss_pred             CC-Cceee----eeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCC--CcE--EEEEecc----CCceeEEEeEE
Q 020798          187 ST-GHCMK----TLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST--GKI--LKTYTGH----TNSKYCISSTF  252 (321)
Q Consensus       187 ~~-~~~~~----~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~--~~~--~~~~~~~----~~~~~~~~~~~  252 (321)
                      .+ ++...    .........+..++|+|+|+++++++ .++.|.+|++..  ++.  .......    ..... .....
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~i~  237 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW-AADIH  237 (343)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC-EEEEE
T ss_pred             cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCC-ccceE
Confidence            87 54322    22223344677899999999876655 789999999953  433  2223211    11111 22233


Q ss_pred             EecCCeEEE-EeCCCCeEEEEEcc----cceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          253 SVTNGKYIV-SGSEDSCVYLWELQ----SRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       253 ~~~~~~~l~-~~~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ..+++++|+ ++..++.|++||+.    ..+.+..+..+.. +.+++|+|++++|++++.+ ++.|.+|+.+
T Consensus       238 ~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~-~~~v~v~~~d  307 (343)
T 1ri6_A          238 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQK-SHHISVYEIV  307 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTT-TCEEEEEEEE
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCC-CCeEEEEEEc
Confidence            346787665 56689999999998    3345555655544 8999999999988887643 5889999654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=2.7e-25  Score=186.31  Aligned_cols=271  Identities=11%  Similarity=0.075  Sum_probs=206.4

Q ss_pred             cccEEEEEECCCCCEEEEecC-------CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE-EEeCC
Q 020798           23 LRAISSVKFSHDGRLLASSSA-------DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV-SASDD   94 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~-------d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-~~~~d   94 (321)
                      ...+..++|+|+|+++++++.       ++.|.+||....        ..+..+.. ...+..++|+|++++++ +...+
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~  110 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--------EVTQAIHN-DLKPFGATINNTTQTLWFGNTVN  110 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--------CEEEEEEE-SSCCCSEEEETTTTEEEEEETTT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--------eEEEEEec-CCCcceEEECCCCCEEEEEecCC
Confidence            456889999999998887764       568999976532        22233322 33467899999998655 45557


Q ss_pred             CcEEEEecCCcceeeeeecCcc---------cEEEEEECCCCCEEEEee--CCCcEEEEecCCCEEEEEEeCCCCCeeEE
Q 020798           95 KTIRLWDVPTATCLKTLIGHTN---------YVFCVNFNPQSNMIVSGA--FDETVRIWDVKTGKCLKVLPAHSDPVTAV  163 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  163 (321)
                      +.|.+||..+++....+..+..         .+..++++|+++.+++++  .++.|.+||..+++....++.+...+..+
T Consensus       111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  190 (353)
T 3vgz_A          111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGL  190 (353)
T ss_dssp             TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred             CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceE
Confidence            9999999999987776654432         268899999999877665  47889999999999888887566668899


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC---CCCCeEEEEEccCCCEEEEEec-CCeEEEEeCCCCcEEEEEe
Q 020798          164 DFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD---ENPPVSFVKFSPNGKFILVGTL-DNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       164 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~-d~~i~i~d~~~~~~~~~~~  239 (321)
                      +|+|+++.+++++.++.+.+||+.+++....+...   ....+..++|+|+|++++++.. ++.|.+||+.+++.+..+.
T Consensus       191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            99999999999999999999999988776655431   2334677999999998877765 4899999999999888776


Q ss_pred             ccCCceeEEEeEEEecCCeE-EEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeec
Q 020798          240 GHTNSKYCISSTFSVTNGKY-IVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALD  308 (321)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d  308 (321)
                      ....  ..  ..+ .+++++ +++...++.|.+||..+++.+..+.... .+.+++|+|++++|..+..+
T Consensus       271 ~~~~--~~--~~~-s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          271 APES--LA--VLF-NPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             CSSC--CC--EEE-ETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEEC
T ss_pred             cCCC--ce--EEE-CCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEcc
Confidence            5432  12  223 367764 5555679999999999998888776543 67999999999976665543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=6.5e-26  Score=188.52  Aligned_cols=276  Identities=14%  Similarity=0.187  Sum_probs=195.0

Q ss_pred             EEECCCCCE-EEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC-CCcEEEEecCCcc
Q 020798           29 VKFSHDGRL-LASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD-DKTIRLWDVPTAT  106 (321)
Q Consensus        29 ~~~s~~g~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~  106 (321)
                      ..|.+++++ +++++.++.|.+||....        ..+..+..+...+ .++|+|+++++++++. ++.|.+||+.+++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~   73 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTL--------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP   73 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTC--------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccc--------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            346666554 778888999999987532        2233334445556 9999999997766655 8899999999888


Q ss_pred             e-eeeeecCcccEEEEEECCCCCEEEEeeCCC---cEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEE-EeCCCe-
Q 020798          107 C-LKTLIGHTNYVFCVNFNPQSNMIVSGAFDE---TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT-SSYDGL-  180 (321)
Q Consensus       107 ~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~-  180 (321)
                      . ...+..+.....+++++|++++++++..++   .|++||+.+++.+..++.+ .....++|+|+++.+++ ...++. 
T Consensus        74 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~  152 (331)
T 3u4y_A           74 PKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANT  152 (331)
T ss_dssp             CEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTE
T ss_pred             eeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCce
Confidence            6 566665655555599999999998655553   8999999999888877654 45689999999985554 456678 


Q ss_pred             EEEEeCCCCcee----eeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcE---EEEEeccCCceeEEEeEE
Q 020798          181 CRIWDASTGHCM----KTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKI---LKTYTGHTNSKYCISSTF  252 (321)
Q Consensus       181 i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~  252 (321)
                      +.+|++.....+    .... ........++|+|+|+++++++ .++.|.+||+.+++.   +..+...... ..   ..
T Consensus       153 i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~-~~---~~  227 (331)
T 3u4y_A          153 VRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLP-GT---IV  227 (331)
T ss_dssp             EEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCC-CC---EE
T ss_pred             EEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCC-ce---EE
Confidence            999998753322    1111 2234578899999999776655 588999999998887   7776644322 22   23


Q ss_pred             EecCCeEEEEe-CCCCeEEEEEcccceE--EEEecCC----CCC---eEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          253 SVTNGKYIVSG-SEDSCVYLWELQSRKV--VQKLEGH----TDP---VISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       253 ~~~~~~~l~~~-~~dg~i~vwd~~~~~~--~~~~~~h----~~~---v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ..++|++++++ ..++.|.+||+.+++.  +..+..+    ..+   ...++|+|++++|+.++.+ ++.|++|+++.
T Consensus       228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~d~~~  304 (331)
T 3u4y_A          228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI-SRELKVFTISG  304 (331)
T ss_dssp             ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT-TTEEEEEETTS
T ss_pred             ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC-CCcEEEEEecC
Confidence            34788866544 5678899999998876  4433322    222   2458999999998777654 57899999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=1.6e-26  Score=188.62  Aligned_cols=253  Identities=14%  Similarity=0.156  Sum_probs=184.7

Q ss_pred             EecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC-cceeeeeecC-ccc
Q 020798           40 SSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT-ATCLKTLIGH-TNY  117 (321)
Q Consensus        40 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~-~~~  117 (321)
                      .++.++.|.+|++...         ....+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...
T Consensus        17 ~~~~~~~i~~~d~~~~---------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~   86 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR---------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATIC   86 (297)
T ss_dssp             -CCCCEEEEEEETTTT---------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred             CCCcceeEEEEeCCCC---------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccc
Confidence            4567899999987532         1234556888999999999999999876 78999999998 7765555455 366


Q ss_pred             EEEEEECCCCCEEEEee--CCCcEEE--EecCCCEEEEEEeCCCCCeeEEEEccCCCEEE-EEeCCCeEEEEeCC--CCc
Q 020798          118 VFCVNFNPQSNMIVSGA--FDETVRI--WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV-TSSYDGLCRIWDAS--TGH  190 (321)
Q Consensus       118 v~~~~~~~~~~~l~~~~--~dg~i~~--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~--~~~  190 (321)
                      +.+++|+|++++|++++  .++..++  ++..+++ ...+..+ ..+..++|+|+++.++ ++..++.+++|+++  ++.
T Consensus        87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~  164 (297)
T 2ojh_A           87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV  164 (297)
T ss_dssp             CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence            78899999999999988  3344444  4555544 3333333 3588899999999777 67789999999853  333


Q ss_pred             eeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCC-CCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC--
Q 020798          191 CMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYS-TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED--  266 (321)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--  266 (321)
                      . .. ...+...+..+.|+|+|++++.++ .++.+++|++. .+..+..+..+...   +......+++++|++++.+  
T Consensus       165 ~-~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~  239 (297)
T 2ojh_A          165 E-TR-LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG---DWFPHPSPSGDKVVFVSYDAD  239 (297)
T ss_dssp             E-EE-CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE---EEEEEECTTSSEEEEEEEETT
T ss_pred             c-eE-cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc---cCCeEECCCCCEEEEEEcCCC
Confidence            2 22 233445688999999999888766 58889999875 44555555544322   3333445789988887765  


Q ss_pred             ---------CeEEEEEcccceE--EEEecCCCCCeEEEEecCCCceEEEEeecC
Q 020798          267 ---------SCVYLWELQSRKV--VQKLEGHTDPVISVASHPTENIIASGALDN  309 (321)
Q Consensus       267 ---------g~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~  309 (321)
                               +.|++||+.+++.  +..+.+|...+.+++|+|++++|++++.|.
T Consensus       240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          240 VFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                     5699999988754  445557888999999999999999988663

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=4.1e-27  Score=215.77  Aligned_cols=284  Identities=11%  Similarity=0.094  Sum_probs=197.3

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccc---cEEEEEECCCCCEEEEEeCC-------
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQ---GVSDLVFSSDSRFLVSASDD-------   94 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~~~~~~~~~~l~~~~~d-------   94 (321)
                      .+.+++|+|||+++++ +.|+.+++|++....        ....+..|..   .|.+++|+|||++|++++.+       
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~--------~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~   88 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT--------STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS   88 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC--------CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCc--------EEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence            3667899999998776 789999999886532        2233344443   48999999999999998764       


Q ss_pred             --CcEEEEecCCcceeeee---ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCe---------
Q 020798           95 --KTIRLWDVPTATCLKTL---IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPV---------  160 (321)
Q Consensus        95 --~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v---------  160 (321)
                        +.+.+||+.+++. ..+   .+|...+..++|+|||+.|+.++. +.|++||+.+++.......+...+         
T Consensus        89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v  166 (723)
T 1xfd_A           89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (723)
T ss_dssp             CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             ceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence              6788999998875 223   234445788999999999998876 799999998887665554443333         


Q ss_pred             ---------eEEEEccCCCEEEEEeCCC----------------------------------eEEEEeCCCCceeeeecc
Q 020798          161 ---------TAVDFNRDGTMIVTSSYDG----------------------------------LCRIWDASTGHCMKTLID  197 (321)
Q Consensus       161 ---------~~~~~~~~~~~l~~~~~dg----------------------------------~i~~~d~~~~~~~~~~~~  197 (321)
                               .+++|+|||+.|++++.++                                  .+++||+.+++....+..
T Consensus       167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~  246 (723)
T 1xfd_A          167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP  246 (723)
T ss_dssp             HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred             EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC
Confidence                     7899999999998887543                                  799999988765444322


Q ss_pred             C-----CCCCeEEEEEccCCCEEEEEec----CCeEEEEeCCCCcEEEEEeccC-CceeEE-EeEEEecCCeEEEE--eC
Q 020798          198 D-----ENPPVSFVKFSPNGKFILVGTL----DNTLRLWNYSTGKILKTYTGHT-NSKYCI-SSTFSVTNGKYIVS--GS  264 (321)
Q Consensus       198 ~-----~~~~~~~~~~~~~g~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~l~~--~~  264 (321)
                      .     +...+..++|+|||+++++...    +..|.+||+.+++....+..+. ...... ....+.+||+.|+.  +.
T Consensus       247 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  326 (723)
T 1xfd_A          247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI  326 (723)
T ss_dssp             CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred             CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence            1     1345778999999998876653    2579999999988766554322 111100 01233478886664  45


Q ss_pred             CCC------eEEEEE-cccce--EEEEecCCCCCeEE-EEecCCCceEEEEeecC-CccEEEcccc
Q 020798          265 EDS------CVYLWE-LQSRK--VVQKLEGHTDPVIS-VASHPTENIIASGALDN-DRTVKIWTQE  319 (321)
Q Consensus       265 ~dg------~i~vwd-~~~~~--~~~~~~~h~~~v~~-~~~~p~~~~l~s~~~d~-~~~i~iw~~~  319 (321)
                      .++      .|.+|| ...++  ....+..+...+.. ++|+|+++.|+..+.++ .+.++||+.+
T Consensus       327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence            666      566677 33333  14445544445555 69999999998766442 2679999864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=8.3e-26  Score=206.59  Aligned_cols=281  Identities=16%  Similarity=0.194  Sum_probs=200.5

Q ss_pred             ccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 020798           24 RAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP  103 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  103 (321)
                      ..|.+++|||| ++++.+. ++.+.+|++...         ....+..+...+.+++|+|||++|+++ .++.|++|++.
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~---------~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~  149 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLAR---------KVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGG  149 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTT---------EEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECB
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCC---------ceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecC
Confidence            56999999999 6655553 599999987532         123344556678889999999999885 67999999998


Q ss_pred             C-----cceeeeeecCccc--------------EEEEEECCCCCEEEEee------------------------------
Q 020798          104 T-----ATCLKTLIGHTNY--------------VFCVNFNPQSNMIVSGA------------------------------  134 (321)
Q Consensus       104 ~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~------------------------------  134 (321)
                      +     ++.......+...              +.++.|+|||++|++++                              
T Consensus       150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g  229 (706)
T 2z3z_A          150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG  229 (706)
T ss_dssp             CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred             cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence            8     7654433333332              47899999999999887                              


Q ss_pred             ---CCCcEEEEecCCCEEEEEEe--CCCCCeeEEEEccCCCEEEEEeCCC-----eEEEEeCCCCceeeeeccC-CC---
Q 020798          135 ---FDETVRIWDVKTGKCLKVLP--AHSDPVTAVDFNRDGTMIVTSSYDG-----LCRIWDASTGHCMKTLIDD-EN---  200 (321)
Q Consensus       135 ---~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~-~~---  200 (321)
                         .+..|++||+.+++......  .|...+..++|+|+++.+++++.++     .|++||+.+++....+... ..   
T Consensus       230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence               44679999999887654432  4556789999999999988877665     8999999988333333211 11   


Q ss_pred             CCeEEEEEcc--CCCEEEEEecCCeEEEEeCC-CCcEEEEEeccCCceeEEEeEEEecCCeEEE-EeCCCC----eEEEE
Q 020798          201 PPVSFVKFSP--NGKFILVGTLDNTLRLWNYS-TGKILKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDS----CVYLW  272 (321)
Q Consensus       201 ~~~~~~~~~~--~g~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg----~i~vw  272 (321)
                      ..+..+.|+|  +|++++++..++.+++|++. +++.+..+..+......  .....++++.|+ +++.++    .|..|
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~--~~~~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTN--FAGFDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEE--EEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEe--eeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence            1235678999  99999988889989999875 56667766655433322  123346776665 445544    67777


Q ss_pred             EcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCC--ccEEEccccc
Q 020798          273 ELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDND--RTVKIWTQEK  320 (321)
Q Consensus       273 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~--~~i~iw~~~~  320 (321)
                      |+.+++ ...+. |...+.+++|+|++++++..+.+.+  +.|++|+.+.
T Consensus       388 d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          388 DIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             ETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             EcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence            776665 33443 6677999999999999888755432  5699998754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=1.1e-25  Score=206.78  Aligned_cols=282  Identities=11%  Similarity=0.089  Sum_probs=201.7

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT  104 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  104 (321)
                      .|.+++|||||++|++++. +.|.+|++.....      .....+..|...+..++|+|||++|+.++. +.|++||+.+
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~------~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~  181 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK------AAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLAS  181 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCST------TSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTT
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCc------ceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCC
Confidence            4889999999999999886 8999998864310      023345667788999999999999998874 6899999988


Q ss_pred             cceeeeeecCccc----------------EEEEEECCCCCEEEEeeCCC-------------------------------
Q 020798          105 ATCLKTLIGHTNY----------------VFCVNFNPQSNMIVSGAFDE-------------------------------  137 (321)
Q Consensus       105 ~~~~~~~~~~~~~----------------v~~~~~~~~~~~l~~~~~dg-------------------------------  137 (321)
                      ++.......+...                +..++|+|||++|++++.|+                               
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            7755433333321                36789999999999887665                               


Q ss_pred             --cEEEEecCC-CEEEEEEe--CCCCCeeEEEEccCCCEEEEEeC-----CCeEEEEeCCCCceeeeeccCCCC---CeE
Q 020798          138 --TVRIWDVKT-GKCLKVLP--AHSDPVTAVDFNRDGTMIVTSSY-----DGLCRIWDASTGHCMKTLIDDENP---PVS  204 (321)
Q Consensus       138 --~i~~wd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~---~~~  204 (321)
                        .|++||+.+ ++......  .|...+..++| |+|+.|++++.     +..|++||+.+++...........   .+.
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence              789999988 76544332  36677899999 99998887653     568999999988765443322211   345


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCC-CCcEEEEEeccCCceeEEEeEEEecCCeEE-EEeCCCC--eEEEEEccc-ceE
Q 020798          205 FVKFSPNGKFILVGTLDNTLRLWNYS-TGKILKTYTGHTNSKYCISSTFSVTNGKYI-VSGSEDS--CVYLWELQS-RKV  279 (321)
Q Consensus       205 ~~~~~~~g~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg--~i~vwd~~~-~~~  279 (321)
                      .++|+|+|++++++..++.++||.+. +++ ...+..+......  .....++++.| ++++.++  .+++|++.. +..
T Consensus       341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~--~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~  417 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDE--LLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ  417 (741)
T ss_dssp             CCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEE--EEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC
T ss_pred             ceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEe--EeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC
Confidence            68999999988888888877777665 344 5666555443322  22234677655 4556565  899999864 454


Q ss_pred             EEEecCCCCCeEEEEecCCCceEEEEeecCC--ccEEEcccc
Q 020798          280 VQKLEGHTDPVISVASHPTENIIASGALDND--RTVKIWTQE  319 (321)
Q Consensus       280 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~--~~i~iw~~~  319 (321)
                      ...+.. ...+.+++|+|++++|+....+.+  ..+.+|+.+
T Consensus       418 ~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          418 PQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             CEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             eeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence            556665 567889999999999888754422  457777653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=5.7e-25  Score=208.94  Aligned_cols=279  Identities=15%  Similarity=0.111  Sum_probs=215.2

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      +.+.+|...+.++.|+++ .++++++.++.+.+|.+...       ......+..|. .+...+|+|+|++|+.+ .++.
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~-------g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~  266 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD-------GKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGS  266 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT-------SCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTE
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC-------CCcceEecCCC-CcceeeEcCCCCEEEEE-eCCE
Confidence            345789999999999998 67778888899999976421       11223344444 45677999999999887 4889


Q ss_pred             EEEEecCCcceeeeeec-----------CcccEEEEEEC-CCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCC-CeeEE
Q 020798           97 IRLWDVPTATCLKTLIG-----------HTNYVFCVNFN-PQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD-PVTAV  163 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~  163 (321)
                      |.+|++...+ +..+..           |...+..++|+ |+|+.|++++ ++.+++|++..++... +..|.. .+..+
T Consensus       267 i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~  343 (1045)
T 1k32_A          267 IYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRR  343 (1045)
T ss_dssp             EEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEE
T ss_pred             EEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEee
Confidence            9999985443 334433           34468899999 9999988877 7899999998776443 555666 78999


Q ss_pred             EEccCCCEEEEEeCCCeEE-EEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccC
Q 020798          164 DFNRDGTMIVTSSYDGLCR-IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT  242 (321)
Q Consensus       164 ~~~~~~~~l~~~~~dg~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  242 (321)
                      +|+ +++.++.++.++.+. +||+.+++.. .+. .+...+..++|+|+|++|++++.++.|++||+.+++.......+.
T Consensus       344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~  420 (1045)
T 1k32_A          344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE  420 (1045)
T ss_dssp             CSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             eEc-CCCeEEEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC
Confidence            999 999999988888888 9998876543 333 455678899999999999999999999999999998877776665


Q ss_pred             CceeEEEeEEEecCCeEEEEeCCC----------CeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCcc
Q 020798          243 NSKYCISSTFSVTNGKYIVSGSED----------SCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT  312 (321)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~  312 (321)
                      .....+   .+.+||++|++++.+          +.|++||+.+++ +..+..|...+.+++|+|+|++|+.++.+  +.
T Consensus       421 ~~v~~~---~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~--~~  494 (1045)
T 1k32_A          421 AMITDF---TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYR--SL  494 (1045)
T ss_dssp             SCCCCE---EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESC--CC
T ss_pred             CCccce---EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecc--cC
Confidence            554333   335899999887654          489999999877 66778888889999999999999988743  44


Q ss_pred             EEEcc
Q 020798          313 VKIWT  317 (321)
Q Consensus       313 i~iw~  317 (321)
                      ..+|+
T Consensus       495 ~~~~~  499 (1045)
T 1k32_A          495 DPSPD  499 (1045)
T ss_dssp             CCEEC
T ss_pred             CcCcc
Confidence            55554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=5e-24  Score=178.43  Aligned_cols=270  Identities=14%  Similarity=0.246  Sum_probs=179.6

Q ss_pred             CCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC---CCcEEEEecCCcc--eeeeeecCccc
Q 020798           43 ADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD---DKTIRLWDVPTAT--CLKTLIGHTNY  117 (321)
Q Consensus        43 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~--~~~~~~~~~~~  117 (321)
                      .++.+.+|.+.....    .... .....+...+..++|+|+|+ |++++.   ++.|.+|++.+++  .+..+..+...
T Consensus        14 ~~~~i~v~~~d~~tg----~~~~-~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~   87 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAK----TLTN-DGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTP   87 (347)
T ss_dssp             SCCEEEEEEEETTTT----EEEE-EEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCC
T ss_pred             CCCCEEEEEEcCCCC----eEEE-eeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCC
Confidence            356677877643110    0011 11233456678899999999 555544   6899999997665  33344456667


Q ss_pred             EEEEEECCCCCEEEEee-CCCcEEEEecCC-C--EEEEEEeCC---------CCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 020798          118 VFCVNFNPQSNMIVSGA-FDETVRIWDVKT-G--KCLKVLPAH---------SDPVTAVDFNRDGTMIVTSSYDGLCRIW  184 (321)
Q Consensus       118 v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~-~--~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~~~  184 (321)
                      +..++++|++++|++++ .++.+.+|++.. +  +.+..+...         ...+..++|+|+++++++...++.+++|
T Consensus        88 p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~  167 (347)
T 3hfq_A           88 PAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVY  167 (347)
T ss_dssp             CSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEE
Confidence            78899999999888877 678999999953 3  223333221         1247889999999966666678899999


Q ss_pred             eCC-CCceee--eeccCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEeCCC--CcE--EEEEeccCCc---eeEEEeEEE
Q 020798          185 DAS-TGHCMK--TLIDDENPPVSFVKFSPNGKFILVG-TLDNTLRLWNYST--GKI--LKTYTGHTNS---KYCISSTFS  253 (321)
Q Consensus       185 d~~-~~~~~~--~~~~~~~~~~~~~~~~~~g~~l~~~-~~d~~i~i~d~~~--~~~--~~~~~~~~~~---~~~~~~~~~  253 (321)
                      |+. +++...  .........+..++|+|+|++++++ ..++.+.+|++..  ++.  +..+......   .........
T Consensus       168 ~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~  247 (347)
T 3hfq_A          168 NVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRL  247 (347)
T ss_dssp             EECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEE
T ss_pred             EECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEE
Confidence            998 443321  1222233456789999999977664 5678999999864  443  2223221111   012233344


Q ss_pred             ecCCeEE-EEeCCCCeEEEEEccc---ceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          254 VTNGKYI-VSGSEDSCVYLWELQS---RKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       254 ~~~~~~l-~~~~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .++|++| ++...++.|.+|++..   .+.+..+..+...+.+++|+|++++|++++.+ ++.|.+|+.+
T Consensus       248 spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~~~d  316 (347)
T 3hfq_A          248 SHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN-TDNATLYARD  316 (347)
T ss_dssp             CTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT-TTEEEEEEEC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC-CCcEEEEEEe
Confidence            5789876 5556789999999973   24566666667778999999999999888754 4789999553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=9.2e-25  Score=199.71  Aligned_cols=279  Identities=10%  Similarity=0.129  Sum_probs=193.8

Q ss_pred             EEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccc-----------------cccEEEEEECCCCCEE
Q 020798           26 ISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH-----------------EQGVSDLVFSSDSRFL   88 (321)
Q Consensus        26 v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h-----------------~~~i~~~~~~~~~~~l   88 (321)
                      +..+.|.  |+.+++++.++ | +||+.+....       ...+..|                 ...|.+++|+|+ +.+
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~-------~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~   95 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSA-------QTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLV   95 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC--------------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEE
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEe-------eEEeechhHhhhhccchhccccccccCceeEEECCC-CeE
Confidence            4446777  66677777788 7 9987643210       0111111                 146999999999 666


Q ss_pred             EEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC-----CEEEEEEeCCCCC----
Q 020798           89 VSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT-----GKCLKVLPAHSDP----  159 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-----~~~~~~~~~~~~~----  159 (321)
                      +.+. ++.+++||+.+++.. .+..+...+..++|+|+|+.|+++ .++.|++||+.+     ++.......+...    
T Consensus        96 ~~~~-~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g  172 (706)
T 2z3z_A           96 VLFT-QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG  172 (706)
T ss_dssp             EEEE-TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred             EEEE-CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence            5553 599999999888653 444566678889999999999885 679999999988     7655443333332    


Q ss_pred             ----------eeEEEEccCCCEEEEEe---------------------------------CCCeEEEEeCCCCceeeeec
Q 020798          160 ----------VTAVDFNRDGTMIVTSS---------------------------------YDGLCRIWDASTGHCMKTLI  196 (321)
Q Consensus       160 ----------v~~~~~~~~~~~l~~~~---------------------------------~dg~i~~~d~~~~~~~~~~~  196 (321)
                                +.+++|+|||+.|++++                                 .+..|++||+.+++......
T Consensus       173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~  252 (706)
T 2z3z_A          173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT  252 (706)
T ss_dssp             SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred             cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence                      47899999999999887                                 44679999999876543322


Q ss_pred             c-CCCCCeEEEEEccCCCEEEEEecCC-----eEEEEeCCCCcEEEEEe-ccCCc-eeEEEeEEEec--CCeEEEEeCCC
Q 020798          197 D-DENPPVSFVKFSPNGKFILVGTLDN-----TLRLWNYSTGKILKTYT-GHTNS-KYCISSTFSVT--NGKYIVSGSED  266 (321)
Q Consensus       197 ~-~~~~~~~~~~~~~~g~~l~~~~~d~-----~i~i~d~~~~~~~~~~~-~~~~~-~~~~~~~~~~~--~~~~l~~~~~d  266 (321)
                      . .+...+..++|+|+|++|++++.++     .|.+||+.+++....+. ..... ...+......+  +|+++++++.|
T Consensus       253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~  332 (706)
T 2z3z_A          253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD  332 (706)
T ss_dssp             CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred             CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence            2 3345678999999999999887775     89999999884333332 21111 00011123346  89999999999


Q ss_pred             CeEEEEEcc-cceEEEEecCCCCCeEE-EEecCCCceEEEEeecCC---ccEEEcccc
Q 020798          267 SCVYLWELQ-SRKVVQKLEGHTDPVIS-VASHPTENIIASGALDND---RTVKIWTQE  319 (321)
Q Consensus       267 g~i~vwd~~-~~~~~~~~~~h~~~v~~-~~~~p~~~~l~s~~~d~~---~~i~iw~~~  319 (321)
                      |.+++|++. .++.+..+..|...+.+ ++|+|+++.|+.++.+++   ..|..|+.+
T Consensus       333 g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  390 (706)
T 2z3z_A          333 GWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK  390 (706)
T ss_dssp             SSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred             CccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence            999999886 56777788888888887 799999998877765432   255555543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=3.1e-25  Score=203.33  Aligned_cols=283  Identities=12%  Similarity=0.056  Sum_probs=192.0

Q ss_pred             eeeeccCCcc---cEEEEEECCCCCEEEEecCC---------ceEEEeeccccCCCCCCCCCcccccccccccEEEEEEC
Q 020798           15 LTQTLNGHLR---AISSVKFSHDGRLLASSSAD---------KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFS   82 (321)
Q Consensus        15 ~~~~~~~h~~---~v~~~~~s~~g~~l~~~~~d---------~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~   82 (321)
                      ..+.+.+|..   .|.+++|||||++|++++.+         +.+.+|++.....      ..+....+|...+..++|+
T Consensus        49 ~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~~~~S  122 (723)
T 1xfd_A           49 STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------QSLDPPEVSNAKLQYAGWG  122 (723)
T ss_dssp             CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------EECCCTTCCSCCCSBCCBC
T ss_pred             EEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce------EeccCCccccccccccEEC
Confidence            3445556654   49999999999999998764         7788998864321      1222334555568899999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccE------------------EEEEECCCCCEEEEeeCCC-------
Q 020798           83 SDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYV------------------FCVNFNPQSNMIVSGAFDE-------  137 (321)
Q Consensus        83 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~l~~~~~dg-------  137 (321)
                      |||+.|+.++. +.|++||+.+++.......+...+                  ..++|+|||+.|++++.++       
T Consensus       123 PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~  201 (723)
T 1xfd_A          123 PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME  201 (723)
T ss_dssp             SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred             CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEE
Confidence            99999998876 789999998887655444333322                  6899999999998887543       


Q ss_pred             ---------------------------cEEEEecCCCEEEEEEeCC------CCCeeEEEEccCCCEEEEEeC----CCe
Q 020798          138 ---------------------------TVRIWDVKTGKCLKVLPAH------SDPVTAVDFNRDGTMIVTSSY----DGL  180 (321)
Q Consensus       138 ---------------------------~i~~wd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~----dg~  180 (321)
                                                 .|++||+.+++....+..+      ...+..++|+|||+.+++...    +..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  281 (723)
T 1xfd_A          202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI  281 (723)
T ss_dssp             ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE
T ss_pred             eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEE
Confidence                                       7999999888754555443      456889999999998876643    357


Q ss_pred             EEEEeCCCCceeeeeccCCCCCe----EEEEEccCCCEEEEE--ecCC------eEEEEe-CCCCcE--EEEEeccCCce
Q 020798          181 CRIWDASTGHCMKTLIDDENPPV----SFVKFSPNGKFILVG--TLDN------TLRLWN-YSTGKI--LKTYTGHTNSK  245 (321)
Q Consensus       181 i~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~l~~~--~~d~------~i~i~d-~~~~~~--~~~~~~~~~~~  245 (321)
                      |++||+.+++........+...+    ..++|+|+|+.|+..  ..++      .|.+|| ...++.  ...+.......
T Consensus       282 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  361 (723)
T 1xfd_A          282 LTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV  361 (723)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred             EEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence            99999998876544322222222    267899999977654  4566      577777 344431  33333222221


Q ss_pred             eEEEeEEEecCCeEEEEe-CCC--CeEEEEEcccce--EEEEecC---CCCCeEEEEecCCCceEEEEe
Q 020798          246 YCISSTFSVTNGKYIVSG-SED--SCVYLWELQSRK--VVQKLEG---HTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~-~~d--g~i~vwd~~~~~--~~~~~~~---h~~~v~~~~~~p~~~~l~s~~  306 (321)
                        .......++|+.|+.. ..+  +.+++|++....  ....+..   |...+..++|+|++++|+...
T Consensus       362 --~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          362 --TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             --EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             --EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence              2222345788877654 444  789999986432  2334443   567789999999999888754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=1.8e-24  Score=180.02  Aligned_cols=263  Identities=11%  Similarity=0.104  Sum_probs=191.0

Q ss_pred             CEEEEecCCceEEEeeccccCCCCCCCCCcccccc-cccc-cEEEEEECCCCCEEE-EEeCCCcEEEEecCCcceeeeee
Q 020798           36 RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFT-GHEQ-GVSDLVFSSDSRFLV-SASDDKTIRLWDVPTATCLKTLI  112 (321)
Q Consensus        36 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~  112 (321)
                      ++|++++.++.|.+||....        ..+..+. ++.. .+..++|+|++++++ ++..++.|.+||+.+++....+.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~   73 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM--------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID   73 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred             cEEEEcCCCCeEEEEECCCC--------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence            47889999999999987532        1222332 1211 478899999998664 55667899999999888766554


Q ss_pred             c-C----cccEEEEEECCCCCEEEEee------------CCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE
Q 020798          113 G-H----TNYVFCVNFNPQSNMIVSGA------------FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus       113 ~-~----~~~v~~~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      . +    ...+..++++|++++++++.            .++.|.+||+.+++....+.. ...+..++|+|+++.++++
T Consensus        74 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~  152 (337)
T 1pby_B           74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE
T ss_pred             cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe
Confidence            2 1    22566889999999988875            579999999999888777765 4457889999999988777


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCC-CCCeEEEEEccCCCEEEEEecCC------------------------eEEEEeCC
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDE-NPPVSFVKFSPNGKFILVGTLDN------------------------TLRLWNYS  230 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~d~------------------------~i~i~d~~  230 (321)
                        ++.+.+||+.+++....+.... ..+   +.|+|+|+.++.....+                        .|.+||+.
T Consensus       153 --~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  227 (337)
T 1pby_B          153 --GRDLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             --SSSEEEEETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             --CCeEEEEECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence              6889999999887765553332 122   26789888765544322                        47899999


Q ss_pred             CCcEEE-EEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecC
Q 020798          231 TGKILK-TYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDN  309 (321)
Q Consensus       231 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~  309 (321)
                      +++... .+..+.....   .....+++++++++  ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.  
T Consensus       228 ~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~--  299 (337)
T 1pby_B          228 TGEMAMREVRIMDVFYF---STAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGA--  299 (337)
T ss_dssp             TCCEEEEEEEECSSCEE---EEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESB--
T ss_pred             CCCceEeecCCCCCcee---eEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcC--
Confidence            887652 1222222222   23345788888887  799999999998888777644 45789999999998888753  


Q ss_pred             CccEEEccccc
Q 020798          310 DRTVKIWTQEK  320 (321)
Q Consensus       310 ~~~i~iw~~~~  320 (321)
                      ++.|++||.+.
T Consensus       300 ~~~i~v~d~~~  310 (337)
T 1pby_B          300 LGDLAAYDAET  310 (337)
T ss_dssp             SSEEEEEETTT
T ss_pred             CCcEEEEECcC
Confidence            58899999863

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=8.9e-24  Score=176.19  Aligned_cols=269  Identities=11%  Similarity=0.159  Sum_probs=180.9

Q ss_pred             CCcccEEEEEECCCCCEEEEecCC-ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC-CCcEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSAD-KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD-DKTIR   98 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d-~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-d~~i~   98 (321)
                      .|...+.+++|+|+|++|++++.+ +.+.+|++...    ......+..+..+. .+..++|+|++++|++++. ++.|.
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~  109 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD----DGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVS  109 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT----TCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC----CCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEE
Confidence            466788999999999988888776 99999987521    01111223333333 7889999999998876654 78899


Q ss_pred             EEecC---CcceeeeeecCcccEEEEEECCCCCEEEEee-CCCcEEEEecCC-CEEEE----EEeC-CCCCeeEEEEccC
Q 020798           99 LWDVP---TATCLKTLIGHTNYVFCVNFNPQSNMIVSGA-FDETVRIWDVKT-GKCLK----VLPA-HSDPVTAVDFNRD  168 (321)
Q Consensus        99 iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~-~~~~~----~~~~-~~~~v~~~~~~~~  168 (321)
                      +||+.   ..+....+.. ...+.+++|+|+++++++++ .++.|++||+.+ ++...    .... ....+..++|+|+
T Consensus       110 ~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd  188 (343)
T 1ri6_A          110 VTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  188 (343)
T ss_dssp             EEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             EEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence            99994   3333333333 34578899999999888776 889999999987 54332    2222 3456788999999


Q ss_pred             CCEEEEEe-CCCeEEEEeCCC--Cce--eeeec--c-C--CCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCC--C--Cc
Q 020798          169 GTMIVTSS-YDGLCRIWDAST--GHC--MKTLI--D-D--ENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYS--T--GK  233 (321)
Q Consensus       169 ~~~l~~~~-~dg~i~~~d~~~--~~~--~~~~~--~-~--~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~--~--~~  233 (321)
                      ++.+++++ .++.+.+||+..  +..  .....  . .  ....+..++|+|+|++|+++. .++.|.+||+.  +  .+
T Consensus       189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~  268 (343)
T 1ri6_A          189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS  268 (343)
T ss_dssp             SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence            99776554 789999999953  322  11111  1 1  122456799999999887655 68999999998  2  33


Q ss_pred             EEEEEeccCCceeEEEeEEEecCCeEEEEeC-CCCeEEEEEcc--cce--EEEEecCCCCCeEEEEecCCCc
Q 020798          234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGS-EDSCVYLWELQ--SRK--VVQKLEGHTDPVISVASHPTEN  300 (321)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~--~~~--~~~~~~~h~~~v~~~~~~p~~~  300 (321)
                      .+..+..+.. ...   ....+++++|++++ .++.|.+|++.  +++  .+..+... ....+++|.|+.+
T Consensus       269 ~~~~~~~~~~-~~~---~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~  335 (343)
T 1ri6_A          269 KEGFQPTETQ-PRG---FNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEG  335 (343)
T ss_dssp             EEEEEECSSS-CCC---EEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred             EeeeecCCCc-cce---EEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccC
Confidence            4444443332 222   23347888777776 68999999654  443  34444442 3457778877654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=2.3e-24  Score=204.84  Aligned_cols=275  Identities=12%  Similarity=0.080  Sum_probs=207.4

Q ss_pred             CcccEEEEEEC-CCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccc-cEEEEEECCCCCEEEEEeCCCcEE-
Q 020798           22 HLRAISSVKFS-HDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQ-GVSDLVFSSDSRFLVSASDDKTIR-   98 (321)
Q Consensus        22 h~~~v~~~~~s-~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~~~~~~l~~~~~d~~i~-   98 (321)
                      |...+.+++|+ |||++|++++ ++.+.+|+....         ....+..|.. .+..++|+ +|+.|++++.++.+. 
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~  362 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT---------YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLG  362 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS---------BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC---------ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEE
Confidence            45578999999 9999999887 788988876431         1233456666 89999999 999999998888888 


Q ss_pred             EEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCC
Q 020798           99 LWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD  178 (321)
Q Consensus        99 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  178 (321)
                      +|++.+++.. .+.+|...+..++|+|+|++|++++.++.|++||+.+++.......|...+..++|+|+|+.+++++.+
T Consensus       363 ~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          363 IYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             EEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             EEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecC
Confidence            8998877643 344777889999999999999999999999999999998877777888899999999999999887764


Q ss_pred             C----------eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcE-------E------
Q 020798          179 G----------LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKI-------L------  235 (321)
Q Consensus       179 g----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~-------~------  235 (321)
                      +          .+++||+.+++ ...+ ..+...+..++|+|+|++|+.++.++...+|+......       +      
T Consensus       442 ~~~~~~~~~~~~i~l~d~~~g~-~~~l-~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (1045)
T 1k32_A          442 KHGETDGYVMQAIHVYDMEGRK-IFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI  519 (1045)
T ss_dssp             CSSTTCSCCEEEEEEEETTTTE-EEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESS
T ss_pred             ccccccCCCCCeEEEEECCCCc-EEEe-eCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeC
Confidence            4          89999999876 3333 33445577899999999999988877777776433221       0      


Q ss_pred             ------------------------------EEEeccCCceeEEEeEEEecCCeEEEE-------------eCCCCeEEEE
Q 020798          236 ------------------------------KTYTGHTNSKYCISSTFSVTNGKYIVS-------------GSEDSCVYLW  272 (321)
Q Consensus       236 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------~~~dg~i~vw  272 (321)
                                                    ..+..+...   +......+++.++++             ......|.+|
T Consensus       520 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~---~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~  596 (1045)
T 1k32_A          520 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD---YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY  596 (1045)
T ss_dssp             TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC---EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEE
T ss_pred             CCCCCccccCcCccccccccccccCHhHceEEcCCCCCC---hhheEEcCCCeEEEEecccCcccccccccCCCceEEEE
Confidence                                          111111111   222333567887775             1235578899


Q ss_pred             EcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          273 ELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       273 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      |+.+++.. .+.   ..+.+++|+|||++|++++.|   .|++|+.+.
T Consensus       597 d~~~~~~~-~l~---~~v~~~~~S~DG~~l~~~~~~---~i~~~d~~~  637 (1045)
T 1k32_A          597 DVKTRKVT-EVK---NNLTDLRLSADRKTVMVRKDD---GKIYTFPLE  637 (1045)
T ss_dssp             ETTTCCEE-EEE---EEEEEEEECTTSCEEEEEETT---SCEEEEESS
T ss_pred             ECCCCcEE-Eee---cCcceEEECCCCCEEEEEcCC---cEEEEeCcc
Confidence            99887643 232   568899999999999998633   699999854

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.94  E-value=8.9e-25  Score=195.45  Aligned_cols=274  Identities=12%  Similarity=0.045  Sum_probs=192.6

Q ss_pred             cccEEEEEECCCCCEEEEecC-CceEEEeeccccCCCCCCCCCccccccccc-ccEEEEEECCCCCEEEEEeC---CCcE
Q 020798           23 LRAISSVKFSHDGRLLASSSA-DKTLLTYSLSSISNSDSTPPSPLQKFTGHE-QGVSDLVFSSDSRFLVSASD---DKTI   97 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~l~~~~~---d~~i   97 (321)
                      ..+|.+++|+|||++||+++. |+.+.+|++...         ....+..|. ..+..++|+|| +.++++..   +...
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---------~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~   90 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---------ETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH   90 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------EEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---------CcEeeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence            557999999999999999887 999999986321         123344455 68999999999 77777765   4556


Q ss_pred             EEEecCC--cceeeeeecCcccEEEEEECCCCCE-EEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEE
Q 020798           98 RLWDVPT--ATCLKTLIGHTNYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus        98 ~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      ++|.+..  ......+.... .....+|+|+++. +++.+.++.+.+||+.+++.......+.   .+++|+|||+.+++
T Consensus        91 ~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~  166 (582)
T 3o4h_A           91 ALFKVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAG  166 (582)
T ss_dssp             EEEEEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred             EEEEEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence            6665433  21112332222 2335678888753 3344444555699999887665544333   78999999999998


Q ss_pred             EeCC----CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCC--eEEEEeCCCCcEEEEEeccCCceeEE
Q 020798          175 SSYD----GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN--TLRLWNYSTGKILKTYTGHTNSKYCI  248 (321)
Q Consensus       175 ~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~  248 (321)
                      ++.+    +.|++||+.+++.. .+ ..+...+..++|+|||+.|+++..++  .|.+||+.+++.. .+..+......+
T Consensus       167 ~~~~~~~~~~i~~~d~~~g~~~-~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~  243 (582)
T 3o4h_A          167 LGFFGGGRVSLFTSNLSSGGLR-VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSY  243 (582)
T ss_dssp             EEEEETTEEEEEEEETTTCCCE-EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHH
T ss_pred             EEEcCCCCeEEEEEcCCCCCce-Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhh
Confidence            8766    78999999887654 33 34455678899999999999877888  8999999988877 555544322211


Q ss_pred             -----EeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCC-ccEEEcccc
Q 020798          249 -----SSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDND-RTVKIWTQE  319 (321)
Q Consensus       249 -----~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~-~~i~iw~~~  319 (321)
                           ......+||.++++++.++.+++|++  ++...   .+...|.+++|+ +++++++++.+.. ..+.+|+.+
T Consensus       244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          244 RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence                 11113478888999999999999999  65543   345678999999 9999988876532 446677653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=1e-23  Score=181.32  Aligned_cols=208  Identities=16%  Similarity=0.119  Sum_probs=158.3

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCC--cc-----cccccccccEEEEEECCCCCEEE----EE
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPS--PL-----QKFTGHEQGVSDLVFSSDSRFLV----SA   91 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~--~~-----~~~~~h~~~i~~~~~~~~~~~l~----~~   91 (321)
                      ...++.+++++++.++++++.++ +++|+.............  .+     .....+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44688999999999999999888 888876543221111000  00     01123556799999999999999    78


Q ss_pred             eCCCcEEEEecCCc--------ce---eeeeecCcccEEEEEECCC-CCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCC
Q 020798           92 SDDKTIRLWDVPTA--------TC---LKTLIGHTNYVFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP  159 (321)
Q Consensus        92 ~~d~~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  159 (321)
                      +.|+.|++||+.+.        +.   ...+.+|...|.+++|+|+ +++|++++.||+|++||++++........|...
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            88999999998654        11   3445679999999999998 789999999999999999998776666778889


Q ss_pred             eeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC------CCCCeEEEEEccCCCEEEEEe-cCC------eEEE
Q 020798          160 VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD------ENPPVSFVKFSPNGKFILVGT-LDN------TLRL  226 (321)
Q Consensus       160 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~-~d~------~i~i  226 (321)
                      +.+++|+|++++|++++.||.|++||.+ ++....+...      +...+..+.|++++.++++.. .+|      .+++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i  273 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM  273 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence            9999999999999999999999999998 4433333211      112678899999988776543 343      3899


Q ss_pred             EeCCCC
Q 020798          227 WNYSTG  232 (321)
Q Consensus       227 ~d~~~~  232 (321)
                      |++++.
T Consensus       274 ~~l~~~  279 (434)
T 2oit_A          274 ALLPKK  279 (434)
T ss_dssp             EECCCT
T ss_pred             EEeccC
Confidence            998764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=6.9e-23  Score=170.23  Aligned_cols=274  Identities=11%  Similarity=0.139  Sum_probs=181.2

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecC-CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSA-DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      ++...+..+...+ .++|+|+|+++++++. ++.+.+|+......       ....+..+.....+++|+|++++++++.
T Consensus        31 ~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~~l~~~~  102 (331)
T 3u4y_A           31 EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-------KVVAIQEGQSSMADVDITPDDQFAVTVT  102 (331)
T ss_dssp             CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-------EEEEEEECSSCCCCEEECTTSSEEEECC
T ss_pred             ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-------eEEecccCCCCccceEECCCCCEEEEec
Confidence            3444445556667 9999999997666554 88999998754211       1334445555555599999999998555


Q ss_pred             CCC---cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEe-eCCCc-EEEEecCCCEEE----EEEeCCCCCeeEE
Q 020798           93 DDK---TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG-AFDET-VRIWDVKTGKCL----KVLPAHSDPVTAV  163 (321)
Q Consensus        93 ~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~~wd~~~~~~~----~~~~~~~~~v~~~  163 (321)
                      .++   .|.+||+.+++.+..+.. ......++|+|++++++++ ..++. |.+|++.....+    ............+
T Consensus       103 ~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~  181 (331)
T 3u4y_A          103 GLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNI  181 (331)
T ss_dssp             CSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEE
T ss_pred             CCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccce
Confidence            553   899999999887766554 3446899999999865544 55688 999998754322    1122334567899


Q ss_pred             EEccCCCEEEEE-eCCCeEEEEeCCCCce---eeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcE--EE
Q 020798          164 DFNRDGTMIVTS-SYDGLCRIWDASTGHC---MKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKI--LK  236 (321)
Q Consensus       164 ~~~~~~~~l~~~-~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~--~~  236 (321)
                      +|+|+++.++++ ..++.|.+||+.+++.   +..+..  ...+..++|+|+|++++++. .++.|.+||+.+++.  +.
T Consensus       182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~  259 (331)
T 3u4y_A          182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVK  259 (331)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeec
Confidence            999999966554 5689999999998876   555432  24456789999999877665 467899999998876  44


Q ss_pred             EEecc----CCceeEEEeEEEecCCeEEE-EeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCC
Q 020798          237 TYTGH----TNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE  299 (321)
Q Consensus       237 ~~~~~----~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~  299 (321)
                      .+...    .............+++++|+ ++..++.|.+||+..... ..+.+....-....++|+.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          260 SFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV-GYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             EEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE-EECTTCCCBSCEEECCCC-
T ss_pred             ccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc-cceecccccCCeEEECCcc
Confidence            44322    11111101123347787765 455677999999976543 3333333222234445543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.93  E-value=6.1e-24  Score=180.48  Aligned_cols=293  Identities=12%  Similarity=0.078  Sum_probs=193.3

Q ss_pred             eeeeccCCcccEEE-----EEECCCCCEEEEecC-Cce--EEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCC
Q 020798           15 LTQTLNGHLRAISS-----VKFSHDGRLLASSSA-DKT--LLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR   86 (321)
Q Consensus        15 ~~~~~~~h~~~v~~-----~~~s~~g~~l~~~~~-d~~--v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~   86 (321)
                      ....+..|......     ++|||||++|+.++. ++.  +.+|++...        ...+...++...+..+.|+|+|+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--------~~~~lt~~~~~~~~~~~~spdg~   93 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--------VATQLTEGRGDNTFGGFLSPDDD   93 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC--------EEEECCCSSCBCSSSCEECTTSS
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC--------ceEEeeeCCCCCccceEEcCCCC
Confidence            34556777766666     899999999998887 664  666665432        12223334444455678999999


Q ss_pred             EEEEEeCCCcEEEEecCCcceeeeeecCcccEEEE--EECCCCCEEEEe----------------------eCCCcEEEE
Q 020798           87 FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCV--NFNPQSNMIVSG----------------------AFDETVRIW  142 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~----------------------~~dg~i~~w  142 (321)
                      .|+.++.++.|++||+.+++.......+...+...  .++|++..++..                      ..+..|++|
T Consensus        94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (388)
T 3pe7_A           94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV  173 (388)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence            99999999999999999987655555555544333  348999888742                      244689999


Q ss_pred             ecCCCEEEEEEeCCCCCeeEEEEcc-CCCEEEEEeCC------CeEEEEeCCCCceeeeeccCCC-CCeEEEEEccCCCE
Q 020798          143 DVKTGKCLKVLPAHSDPVTAVDFNR-DGTMIVTSSYD------GLCRIWDASTGHCMKTLIDDEN-PPVSFVKFSPNGKF  214 (321)
Q Consensus       143 d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~  214 (321)
                      |+.+++.... ..+...+..++|+| +++.++.+..+      ..+.++|...+.. ..+..... ..+....|+|+|+.
T Consensus       174 d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          174 DLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSA  251 (388)
T ss_dssp             ETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSC
T ss_pred             ECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCE
Confidence            9998865443 34566789999999 99988877653      3788888765543 23322221 24667899999997


Q ss_pred             EEEEec-CC----eEEEEeCCCCcEEE--EEeccCCceeEEEeEEEecCCeEEEEe---------CCCCeEEEEEcccce
Q 020798          215 ILVGTL-DN----TLRLWNYSTGKILK--TYTGHTNSKYCISSTFSVTNGKYIVSG---------SEDSCVYLWELQSRK  278 (321)
Q Consensus       215 l~~~~~-d~----~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~dg~i~vwd~~~~~  278 (321)
                      |+..+. ++    .|.+||+.+++...  .+.++.............+||+.|+..         ..+..|++||+.+++
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence            765443 22    39999999887433  232210000000000123577766643         456789999998876


Q ss_pred             EEEEecCCCC-----------CeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          279 VVQKLEGHTD-----------PVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       279 ~~~~~~~h~~-----------~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      . ..+..|..           .+.+++|+|||+.|+..+. .++...||.++
T Consensus       332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~-~~g~~~l~~~~  381 (388)
T 3pe7_A          332 Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD-VHGKPALYLAT  381 (388)
T ss_dssp             E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC-TTSSCEEEEEE
T ss_pred             e-EEeccccCcccccccccccCCCCccCCCCCCEEEEEec-CCCceeEEEEE
Confidence            5 44555554           5788999999999998774 45677777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=1.4e-22  Score=170.48  Aligned_cols=276  Identities=13%  Similarity=0.198  Sum_probs=178.6

Q ss_pred             CCCEEEEe----cCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC----CcEEEEecCC-
Q 020798           34 DGRLLASS----SADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD----KTIRLWDVPT-  104 (321)
Q Consensus        34 ~g~~l~~~----~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~-  104 (321)
                      +..++++|    +.++.+.+|.+....    .....+...  +...+..++|+|+|++|++++.+    +.|.+|++.. 
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~----g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~   85 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEET----GESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE   85 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTT----CCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCC----CCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC
Confidence            33455555    345688888764311    111122222  56667889999999999988876    7999998865 


Q ss_pred             -cc--eeeeeecCcccEEEEEECCCCCEEEEee-CCCcEEEEecCCCEEEEE----Ee--C--------CCCCeeEEEEc
Q 020798          105 -AT--CLKTLIGHTNYVFCVNFNPQSNMIVSGA-FDETVRIWDVKTGKCLKV----LP--A--------HSDPVTAVDFN  166 (321)
Q Consensus       105 -~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~----~~--~--------~~~~v~~~~~~  166 (321)
                       ++  .+.....+......+++  +++++++++ .++.+.+|++.....+..    ..  .        +...+.+++|+
T Consensus        86 ~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s  163 (361)
T 3scy_A           86 KGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT  163 (361)
T ss_dssp             TTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC
T ss_pred             CCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC
Confidence             33  22333334555667777  777776665 678999999875432211    11  1        12235789999


Q ss_pred             cCCCEEEEEe-CCCeEEEEeCCCCce------e------eeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCC
Q 020798          167 RDGTMIVTSS-YDGLCRIWDASTGHC------M------KTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTG  232 (321)
Q Consensus       167 ~~~~~l~~~~-~dg~i~~~d~~~~~~------~------~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~  232 (321)
                      |+++.+++++ .++.+.+|++.....      +      .............++|+|+|++++++. .++.|.+||+.++
T Consensus       164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          164 PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred             CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence            9999766555 588999998764321      1      122223344577899999999888777 5899999999876


Q ss_pred             cE--EEEEeccCCceeEEEeEEEecCCeEEEEeCC--CCeEEEEEcc--cce--EEEEecCCCCCeEEEEecCCCceEEE
Q 020798          233 KI--LKTYTGHTNSKYCISSTFSVTNGKYIVSGSE--DSCVYLWELQ--SRK--VVQKLEGHTDPVISVASHPTENIIAS  304 (321)
Q Consensus       233 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~--~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s  304 (321)
                      +.  +..+................++|++|++++.  ++.|.+|++.  +++  .+..+.. ...+.+++|+|++++|++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~  322 (361)
T 3scy_A          244 MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLV  322 (361)
T ss_dssp             EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEE
T ss_pred             ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEE
Confidence            54  2333222111111223334578988866554  5899999995  343  4444544 456789999999999988


Q ss_pred             EeecCCccEEEcccc
Q 020798          305 GALDNDRTVKIWTQE  319 (321)
Q Consensus       305 ~~~d~~~~i~iw~~~  319 (321)
                      ++.+ ++.|.+|..+
T Consensus       323 ~~~~-~~~v~v~~~d  336 (361)
T 3scy_A          323 ACRD-TNVIQIFERD  336 (361)
T ss_dssp             EETT-TTEEEEEEEC
T ss_pred             EECC-CCCEEEEEEE
Confidence            8754 4789997654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.5e-22  Score=169.49  Aligned_cols=243  Identities=13%  Similarity=0.113  Sum_probs=182.8

Q ss_pred             cccEEEEEECCCCCEEEEEeC-------CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCCCcEEEEec
Q 020798           73 EQGVSDLVFSSDSRFLVSASD-------DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFDETVRIWDV  144 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~  144 (321)
                      ...+..++|+|+++++++++.       ++.|.+||..+++....+.. ...+..++++|+++.++ +...++.|.+||.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            456889999999998887764       56899999999887766653 33467889999999654 5556799999999


Q ss_pred             CCCEEEEEEeCCCCC---------eeEEEEccCCCEEEEEe--CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCC
Q 020798          145 KTGKCLKVLPAHSDP---------VTAVDFNRDGTMIVTSS--YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK  213 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~  213 (321)
                      .+++....+..+...         +..++|+|+++.+++++  .++.|.+||..+++....+. .....+..++|+|+|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTT
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCC
Confidence            999888777665422         67899999999777665  47899999999887766653 1233466789999999


Q ss_pred             EEEEEecCCeEEEEeCCCCcEEEEEeccCC-ceeEEEeEEEecCCeEEEEe-CCCCeEEEEEcccceEEEEecCCCCCeE
Q 020798          214 FILVGTLDNTLRLWNYSTGKILKTYTGHTN-SKYCISSTFSVTNGKYIVSG-SEDSCVYLWELQSRKVVQKLEGHTDPVI  291 (321)
Q Consensus       214 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~  291 (321)
                      +++++..++.|.+||+.+++.+..+..... ...........+++++++++ ..++.|.+||+.+++.+..+.... + .
T Consensus       198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~  275 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-S-L  275 (353)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-C-C
T ss_pred             EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-C-c
Confidence            999999999999999999998877754221 11112222334677655544 556999999999998887776543 2 6


Q ss_pred             EEEecCCCceEEEEeecCCccEEEccccc
Q 020798          292 SVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       292 ~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .++|+|+++++..+.. .++.|.+||.+.
T Consensus       276 ~~~~s~dg~~l~v~~~-~~~~v~~~d~~~  303 (353)
T 3vgz_A          276 AVLFNPARNEAYVTHR-QAGKVSVIDAKS  303 (353)
T ss_dssp             CEEEETTTTEEEEEET-TTTEEEEEETTT
T ss_pred             eEEECCCCCEEEEEEC-CCCeEEEEECCC
Confidence            7999999997666543 358999999853

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=2.7e-23  Score=169.44  Aligned_cols=233  Identities=18%  Similarity=0.211  Sum_probs=165.3

Q ss_pred             eccCCcccEEEEEECCCCCEEEEecCCceEEEeeccc-cCCCCCCCCCcccccccc-cccEEEEEECCCCCEEEEEe--C
Q 020798           18 TLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSS-ISNSDSTPPSPLQKFTGH-EQGVSDLVFSSDSRFLVSAS--D   93 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~l~~~~--~   93 (321)
                      .+..|...|.+++|+|+|++|++++ ++.+.+|++.. ..        .......| ...+.+++|+|++++|++++  .
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  106 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS--------PEKVDTGFATICNNDHGISPDGALYAISDKVE  106 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS--------CEECCCTTCCCBCSCCEECTTSSEEEEEECTT
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC--------ceEeccccccccccceEECCCCCEEEEEEeCC
Confidence            4556888999999999999999987 78999998764 21        12223333 36788999999999999988  3


Q ss_pred             CCcEEEEe--cCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCCCcEEEEecC--CCEEEEEEeCCCCCeeEEEEccC
Q 020798           94 DKTIRLWD--VPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFDETVRIWDVK--TGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        94 d~~i~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      ++...+|.  ..++. ...+..+ ..+..++|+|+++.|+ +++.++.+++|++.  +++ ...+..+...+.+++|+|+
T Consensus       107 ~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~d  183 (297)
T 2ojh_A          107 FGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPD  183 (297)
T ss_dssp             TSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTT
T ss_pred             CCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCC
Confidence            34555554  44444 3333333 3488899999999877 77889999999853  333 4455667788999999999


Q ss_pred             CCEEEEEe-CCCeEEEEeCC-CCceeeeeccCCCCCeEEEEEccCCCEEEEEecC-----------CeEEEEeCCCCcEE
Q 020798          169 GTMIVTSS-YDGLCRIWDAS-TGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD-----------NTLRLWNYSTGKIL  235 (321)
Q Consensus       169 ~~~l~~~~-~dg~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d-----------~~i~i~d~~~~~~~  235 (321)
                      ++.+++++ .++.+++|++. .+.....+ ..+...+..+.|+|+|++|++++.+           +.|.+||+.+++..
T Consensus       184 g~~l~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  262 (297)
T 2ojh_A          184 GRWIYFNSSRTGQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE  262 (297)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred             CCEEEEEecCCCCccEEEECCCCCCcEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence            99887666 58889999875 33333333 3344567789999999999888765           56999999887653


Q ss_pred             E--EEeccCCceeEEEeEEEecCCeEEEEeCCC
Q 020798          236 K--TYTGHTNSKYCISSTFSVTNGKYIVSGSED  266 (321)
Q Consensus       236 ~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  266 (321)
                      .  .+.++......+   .+.+++++|++++.+
T Consensus       263 ~~~~~~~~~~~~~~~---~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          263 TLFDLFGGQGTMNSP---NWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EEEEEEESTTTSCSC---CBCTTSSEEEEEEEC
T ss_pred             eeeccCCCCcccccc---eECCCCCEEEEEEec
Confidence            3  333444443332   234788888777654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1.4e-22  Score=168.51  Aligned_cols=245  Identities=12%  Similarity=0.096  Sum_probs=179.1

Q ss_pred             cEEEEEECCCCCEE-EEecCCceEEEeeccccCCCCCCCCCccccccc-----ccccEEEEEECCCCCEEEEEe------
Q 020798           25 AISSVKFSHDGRLL-ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTG-----HEQGVSDLVFSSDSRFLVSAS------   92 (321)
Q Consensus        25 ~v~~~~~s~~g~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~i~~~~~~~~~~~l~~~~------   92 (321)
                      .+..++|+|+|+++ ++++.++.|.+|++....        .+..+..     |...+..++|+|+|++|+++.      
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  106 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE  106 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--------eEeeEEcCCcccccccccceEECCCCCEEEEEecccccc
Confidence            47789999999865 556678899999875421        1222221     223567899999999988886      


Q ss_pred             ------CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEc
Q 020798           93 ------DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFN  166 (321)
Q Consensus        93 ------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  166 (321)
                            .++.|.+||+.+++....+.. ...+..++|+|++++++++  ++.|++||+.+++....+..+... ..+.|+
T Consensus       107 ~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s  182 (337)
T 1pby_B          107 LTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQ  182 (337)
T ss_dssp             SSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCC
T ss_pred             cccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeC
Confidence                  579999999998877665543 4456788999999988877  688999999999887776654311 133788


Q ss_pred             cCCCEEEEEeC-CC-----------------------eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCC
Q 020798          167 RDGTMIVTSSY-DG-----------------------LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN  222 (321)
Q Consensus       167 ~~~~~l~~~~~-dg-----------------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~  222 (321)
                      |++..++..+. ++                       .+.+||+.+++............+..++|+|+|++++++  ++
T Consensus       183 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~  260 (337)
T 1pby_B          183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YN  260 (337)
T ss_dssp             CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ES
T ss_pred             CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CC
Confidence            98876654432 22                       468999988776422222333456789999999999887  78


Q ss_pred             eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC
Q 020798          223 TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT  287 (321)
Q Consensus       223 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~  287 (321)
                      .|.+||+.+++.+..+..... ...   ....+++++|++++.++.|++||+.+++.+..+..+.
T Consensus       261 ~v~~~d~~~~~~~~~~~~~~~-~~~---~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          261 VLESFDLEKNASIKRVPLPHS-YYS---VNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             EEEEEETTTTEEEEEEECSSC-CCE---EEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             eEEEEECCCCcCcceecCCCc-eee---EEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence            999999999988877764432 222   2334788888888899999999999998887776543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=6.5e-22  Score=165.36  Aligned_cols=234  Identities=12%  Similarity=0.109  Sum_probs=172.0

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCc-ccEEEEEECCCCCEEE-EeeCCCcEEEEecCCCEEEEEEeCC
Q 020798           79 LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHT-NYVFCVNFNPQSNMIV-SGAFDETVRIWDVKTGKCLKVLPAH  156 (321)
Q Consensus        79 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~  156 (321)
                      ++++++++++++++.++.|.+||+.+++....+..+. ..+..++++|+++.++ ++..++.|.+||+.+++....+...
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence            4677888899999999999999999988777665443 1467889999998654 5567899999999999887776643


Q ss_pred             C------CCeeEEEEccCCCEEEEEeCC------------CeEEEEeCCCCceeeeec-cCCCCCeEEEEEccCCCEEEE
Q 020798          157 S------DPVTAVDFNRDGTMIVTSSYD------------GLCRIWDASTGHCMKTLI-DDENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       157 ~------~~v~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~  217 (321)
                      .      ..+..++|+|+++.+++++.+            +.|.+||+.+++...... ......+..++|+|+|+ +++
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~  163 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYV  163 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEE
T ss_pred             cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEE
Confidence            3      237889999999999888865            899999998754322111 11223467788999999 555


Q ss_pred             EecCCeEEEEeCCCCcEEEEEeccCC------------------------ceeEE-------------------------
Q 020798          218 GTLDNTLRLWNYSTGKILKTYTGHTN------------------------SKYCI-------------------------  248 (321)
Q Consensus       218 ~~~d~~i~i~d~~~~~~~~~~~~~~~------------------------~~~~~-------------------------  248 (321)
                      ++  +.|.+||+.+++.+..+.....                        ....+                         
T Consensus       164 ~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  241 (349)
T 1jmx_B          164 AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK  241 (349)
T ss_dssp             ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred             cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence            43  3499999999888777653320                        00000                         


Q ss_pred             ----------------EeEEEec-CCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCc
Q 020798          249 ----------------SSTFSVT-NGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDR  311 (321)
Q Consensus       249 ----------------~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~  311 (321)
                                      ......+ ++++++++  ++.|.+||+.+++.+..+... ..+.+++|+|++++|++++  .++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~--~~~  316 (349)
T 1jmx_B          242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGG--TFN  316 (349)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEES--BSS
T ss_pred             CCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEec--CCC
Confidence                            0111225 78888877  889999999999887777643 3578999999999888865  358


Q ss_pred             cEEEccccc
Q 020798          312 TVKIWTQEK  320 (321)
Q Consensus       312 ~i~iw~~~~  320 (321)
                      .|++||.+.
T Consensus       317 ~v~v~d~~~  325 (349)
T 1jmx_B          317 DLAVFNPDT  325 (349)
T ss_dssp             EEEEEETTT
T ss_pred             eEEEEeccc
Confidence            999999863

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=1.4e-21  Score=163.52  Aligned_cols=249  Identities=12%  Similarity=0.166  Sum_probs=165.4

Q ss_pred             CCcccEEEEEECCCCCEEEEecC---CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe-CCCc
Q 020798           21 GHLRAISSVKFSHDGRLLASSSA---DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS-DDKT   96 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~-~d~~   96 (321)
                      .+...+..++|+|+|+ |++++.   ++.|.+|++....      ...+..+..+...+..++|+|+|++|++++ .++.
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~------~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~  109 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT------AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGT  109 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE------EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc------EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCE
Confidence            4556777899999999 555543   6899999884311      112333345667788999999999888887 7789


Q ss_pred             EEEEecCC-cc--eeeeeec---------CcccEEEEEECCCCCEEEEeeCCCcEEEEecC-CCEEEE--EEeCC-CCCe
Q 020798           97 IRLWDVPT-AT--CLKTLIG---------HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK-TGKCLK--VLPAH-SDPV  160 (321)
Q Consensus        97 i~iwd~~~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~--~~~~~-~~~v  160 (321)
                      +.+|++.. +.  .+..+..         ....+.+++|+|+++.+++...++.|++|++. +++...  .+..+ ....
T Consensus       110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p  189 (347)
T 3hfq_A          110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP  189 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred             EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence            99999963 22  2222221         12347889999999966666678899999998 454322  22222 3357


Q ss_pred             eEEEEccCCCEEEE-EeCCCeEEEEeCCC--Ccee--eeeccCC-----CCCeEEEEEccCCCEEEE-EecCCeEEEEeC
Q 020798          161 TAVDFNRDGTMIVT-SSYDGLCRIWDAST--GHCM--KTLIDDE-----NPPVSFVKFSPNGKFILV-GTLDNTLRLWNY  229 (321)
Q Consensus       161 ~~~~~~~~~~~l~~-~~~dg~i~~~d~~~--~~~~--~~~~~~~-----~~~~~~~~~~~~g~~l~~-~~~d~~i~i~d~  229 (321)
                      ..++|+|+|+++++ ...++.+.+|++..  ++..  .......     ...+..++|+|+|++|++ ...++.|.+|++
T Consensus       190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            78999999996655 55788999998763  4321  1111111     134778999999998855 456899999998


Q ss_pred             CCC---cEEEEEeccCCceeEEEeEEEecCCeEEEEeCC-CCeEEEEEc--ccceE
Q 020798          230 STG---KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSE-DSCVYLWEL--QSRKV  279 (321)
Q Consensus       230 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~--~~~~~  279 (321)
                      ...   +.+..+..+......+   ...++|++|++++. ++.|.+|++  .++++
T Consensus       270 ~~~g~~~~~~~~~~~~~~~~~~---~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          270 TADGHLTLIQQISTEGDFPRDF---DLDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             CGGGCEEEEEEEECSSSCCCEE---EECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             CCCCcEEEeEEEecCCCCcCeE---EECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            732   3444554433222222   23478887777654 589999955  45554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=6.9e-23  Score=187.66  Aligned_cols=281  Identities=12%  Similarity=0.069  Sum_probs=183.1

Q ss_pred             cEEEEEECCCCCEEEEecC---------CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           25 AISSVKFSHDGRLLASSSA---------DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~---------d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      .+.+++|||||++|++++.         ++.+.+|++.+.....      ...+   ...+..++|+|||+.|+.+. ++
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~------~~~l---~~~~~~~~~SPDG~~la~~~-~~  130 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR------GNEL---PRPIQYLCWSPVGSKLAYVY-QN  130 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------SSCC---CSSBCCEEECSSTTCEEEEE-TT
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc------ceec---CcccccceECCCCCEEEEEE-CC
Confidence            3899999999999999876         7899999986532100      0111   24578899999999999875 78


Q ss_pred             cEEEEecCCcceeeee-ecCcccE-----------------EEEEECCCCCEEEEeeCCC--------------------
Q 020798           96 TIRLWDVPTATCLKTL-IGHTNYV-----------------FCVNFNPQSNMIVSGAFDE--------------------  137 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~~~~~dg--------------------  137 (321)
                      .|++|++.+++..... .++...+                 .+++|+|||+.|++++.|.                    
T Consensus       131 ~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~  210 (719)
T 1z68_A          131 NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTI  210 (719)
T ss_dssp             EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEE
T ss_pred             eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccce
Confidence            9999999887654322 2222222                 4799999999999887552                    


Q ss_pred             --------------cEEEEecCCCEEE---E-----EEeCCCCCeeEEEEccCCCEEEEEeCC----CeEEEEe----CC
Q 020798          138 --------------TVRIWDVKTGKCL---K-----VLPAHSDPVTAVDFNRDGTMIVTSSYD----GLCRIWD----AS  187 (321)
Q Consensus       138 --------------~i~~wd~~~~~~~---~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d----~~  187 (321)
                                    .|++||+.+++..   .     .+..|...+..++|+||++++++....    ..|.+||    +.
T Consensus       211 ~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~  290 (719)
T 1z68_A          211 NIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ  290 (719)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred             eecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC
Confidence                          7889999877642   1     123467778999999998766664332    2488899    77


Q ss_pred             CCceeeeec---cCCCCCeE-----EEEEccCCCEEEE--EecCC--eEEEEeCCCCcEEEEEeccCCceeEEEeEEEec
Q 020798          188 TGHCMKTLI---DDENPPVS-----FVKFSPNGKFILV--GTLDN--TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVT  255 (321)
Q Consensus       188 ~~~~~~~~~---~~~~~~~~-----~~~~~~~g~~l~~--~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (321)
                      ++++.....   ..+...+.     .+.|+|+|+.++.  +..++  .|.+||+.+++ ...+..+......  ..++ +
T Consensus       291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~--~~~~-d  366 (719)
T 1z68_A          291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAIN--IFRV-T  366 (719)
T ss_dssp             SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEE--EEEE-C
T ss_pred             CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEE--EEEE-e
Confidence            765443321   22333343     6789999996654  33444  57778887766 3344433322222  2333 3


Q ss_pred             CCeEEEEeCC----CCeEEEEEccc--ce-EEEEec----CCCCCeEEEEecCCCceEEEE-eecCCccEEEcccc
Q 020798          256 NGKYIVSGSE----DSCVYLWELQS--RK-VVQKLE----GHTDPVISVASHPTENIIASG-ALDNDRTVKIWTQE  319 (321)
Q Consensus       256 ~~~~l~~~~~----dg~i~vwd~~~--~~-~~~~~~----~h~~~v~~~~~~p~~~~l~s~-~~d~~~~i~iw~~~  319 (321)
                      ++..++++..    ++..++|.+..  +. ....+.    +|...+..+.|+|++++++.. +.+....+.+|+.+
T Consensus       367 ~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~  442 (719)
T 1z68_A          367 QDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR  442 (719)
T ss_dssp             SSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred             CCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence            4444445544    58888998764  32 123333    256678899999999887754 33333467888764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=2.6e-22  Score=172.57  Aligned_cols=230  Identities=12%  Similarity=0.142  Sum_probs=162.5

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc----------eee-----eeecCcccEEEEEECCCCCEEE----Eee
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT----------CLK-----TLIGHTNYVFCVNFNPQSNMIV----SGA  134 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------~~~-----~~~~~~~~v~~~~~~~~~~~l~----~~~  134 (321)
                      ..++.+++++++.++++++.++ +++|+.....          ...     ....+...+.+++|+|++++|+    +++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            3578899999999999999888 8888753110          000     1123566799999999999999    788


Q ss_pred             CCCcEEEEecCCC--------E---EEEEEeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCC
Q 020798          135 FDETVRIWDVKTG--------K---CLKVLPAHSDPVTAVDFNRD-GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPP  202 (321)
Q Consensus       135 ~dg~i~~wd~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  202 (321)
                      .|+.|++||++++        +   ....+..|...|.+++|+|+ +.+|++++.||+|++||++++....... .+...
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-~~~~~  194 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-PSTVA  194 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-CGGGC
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-CCCCc
Confidence            9999999998654        1   23445668899999999998 7899999999999999999875543332 34567


Q ss_pred             eEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCC-----ceeEEEeEEEecCCeEEEE-eCCCC------eEE
Q 020798          203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN-----SKYCISSTFSVTNGKYIVS-GSEDS------CVY  270 (321)
Q Consensus       203 ~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~-~~~dg------~i~  270 (321)
                      +.+++|+|+|++|++|+.|+.|++||++ ++....+..+..     ........+. +++.++++ .+.+|      .++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~-~~~~~l~~~~~~dg~~~~~~~v~  272 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI-GTYVFAIVYAAADGTLETSPDVV  272 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE-ETTEEEEEEEETTCCSSSCCEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe-cCceEEEEEccCCCccCCCCceE
Confidence            9999999999999999999999999998 666666654422     1233444444 56666643 33443      389


Q ss_pred             EEEcccce-----EEEEec-------CCCCCeEEEEecCCCceEEEEee
Q 020798          271 LWELQSRK-----VVQKLE-------GHTDPVISVASHPTENIIASGAL  307 (321)
Q Consensus       271 vwd~~~~~-----~~~~~~-------~h~~~v~~~~~~p~~~~l~s~~~  307 (321)
                      +|++...+     ....+.       +...+-..+.+-++.+++++++.
T Consensus       273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~  321 (434)
T 2oit_A          273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA  321 (434)
T ss_dssp             EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred             EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC
Confidence            99997542     122221       22233344445577777777653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=8.7e-22  Score=164.58  Aligned_cols=241  Identities=12%  Similarity=0.099  Sum_probs=174.3

Q ss_pred             EEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccccccc-ccEEEEEECCCCCEEE-EEeCCCcEEEEecCCc
Q 020798           28 SVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHE-QGVSDLVFSSDSRFLV-SASDDKTIRLWDVPTA  105 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~  105 (321)
                      .++++++++++++++.++.|.+||....        ..+..+..+. ..+..++|+|++++++ ++..++.|.+||+.++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~   75 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC   75 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCC--------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence            4578899999999999999999987542        1223333222 2577899999998665 5557889999999988


Q ss_pred             ceeeeeecC------cccEEEEEECCCCCEEEEeeCC------------CcEEEEecCCCE---EEEEEeCCCCCeeEEE
Q 020798          106 TCLKTLIGH------TNYVFCVNFNPQSNMIVSGAFD------------ETVRIWDVKTGK---CLKVLPAHSDPVTAVD  164 (321)
Q Consensus       106 ~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d------------g~i~~wd~~~~~---~~~~~~~~~~~v~~~~  164 (321)
                      +....+...      ...+..++++|+++++++++.+            +.|.+||+.+++   .+..+.. ...+.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~  154 (349)
T 1jmx_B           76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMR  154 (349)
T ss_dssp             EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEE
T ss_pred             cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCccccee
Confidence            876655432      2336788999999999988865            899999998743   2233333 34678899


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCC---------------------------------------------
Q 020798          165 FNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDE---------------------------------------------  199 (321)
Q Consensus       165 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---------------------------------------------  199 (321)
                      |+|+++ +++++.  .+.+||+.+++....+....                                             
T Consensus       155 ~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  231 (349)
T 1jmx_B          155 AADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  231 (349)
T ss_dssp             ECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             ECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence            999999 555544  49999998877654432211                                             


Q ss_pred             ----------------------CCCeEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecC
Q 020798          200 ----------------------NPPVSFVKFSP-NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       200 ----------------------~~~~~~~~~~~-~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (321)
                                            ...+..++++| +|++++++  ++.|.+||+.+++.+..+..... ...   ....++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~-~~~---~~~s~d  305 (349)
T 1jmx_B          232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT-YYC---VAFDKK  305 (349)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC-CCE---EEECSS
T ss_pred             ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC-ccc---eEECCC
Confidence                                  01234567779 99998887  88999999999988877764332 222   233467


Q ss_pred             CeEEEEeCCCCeEEEEEcccceEEEEecCC
Q 020798          257 GKYIVSGSEDSCVYLWELQSRKVVQKLEGH  286 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h  286 (321)
                      +++|++++.++.|++||+.+++.+..+..+
T Consensus       306 g~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          306 GDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            888888888999999999999888776544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.90  E-value=1e-21  Score=165.57  Aligned_cols=244  Identities=12%  Similarity=0.133  Sum_probs=166.3

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccceeeeee--cCcccEEEEEECCCCCE--EEEee-------------C
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVP-TATCLKTLI--GHTNYVFCVNFNPQSNM--IVSGA-------------F  135 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~--l~~~~-------------~  135 (321)
                      ..+..++|+|+|++|++++.+ .|.+|++. +++......  .+ +....++++|++++  +++++             .
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            357789999999999988887 99999987 665433221  11 22445789999984  45553             6


Q ss_pred             CCcEEEEecC-CCEEEEEEe----CCCCCeeEEEEccCCCEEEEEe-CCCeEEEEeCC-CCceee--eeccC-CCCCeEE
Q 020798          136 DETVRIWDVK-TGKCLKVLP----AHSDPVTAVDFNRDGTMIVTSS-YDGLCRIWDAS-TGHCMK--TLIDD-ENPPVSF  205 (321)
Q Consensus       136 dg~i~~wd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~-~~~~~~--~~~~~-~~~~~~~  205 (321)
                      ++.+.+|++. +++....+.    .+...+..++|+|+|+.++++. .++.|++||+. +++...  .+... +...+..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            8999999997 455443333    2456789999999999887765 46799999998 665422  22111 2445788


Q ss_pred             EEEccCCCEEEEEec-CCeEEEEeCC--CCcEEE---EEeccC----Ccee------EEEeEE-EecCCeEEEEeCCC-C
Q 020798          206 VKFSPNGKFILVGTL-DNTLRLWNYS--TGKILK---TYTGHT----NSKY------CISSTF-SVTNGKYIVSGSED-S  267 (321)
Q Consensus       206 ~~~~~~g~~l~~~~~-d~~i~i~d~~--~~~~~~---~~~~~~----~~~~------~~~~~~-~~~~~~~l~~~~~d-g  267 (321)
                      ++|+|+|++++++.. ++.|.+|++.  +++...   .+....    ....      ...... ..+||++|++++.+ .
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~  277 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence            999999999888775 6899999765  455432   222111    1010      122233 56889888766532 2


Q ss_pred             -----eEEEEEcc-cceEEE---EecCCCCCeEEEEecC---CCceEEEEeecCCccEEEccccc
Q 020798          268 -----CVYLWELQ-SRKVVQ---KLEGHTDPVISVASHP---TENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       268 -----~i~vwd~~-~~~~~~---~~~~h~~~v~~~~~~p---~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                           .|++|++. ++++..   ....+......++|+|   ++++|++++.+ ++.|++|+.+.
T Consensus       278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-~~~v~v~~~~~  341 (365)
T 1jof_A          278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-EGWLEIYRWKD  341 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-SCEEEEEEEET
T ss_pred             CCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC-CCeEEEEEEch
Confidence                 89999996 555433   2334555678899999   89999998754 47899998764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=9.3e-21  Score=159.39  Aligned_cols=265  Identities=13%  Similarity=0.183  Sum_probs=173.2

Q ss_pred             CcccEEEEEECCCCCEEEEecCC----ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe-CCCc
Q 020798           22 HLRAISSVKFSHDGRLLASSSAD----KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS-DDKT   96 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d----~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~-~d~~   96 (321)
                      |...+..++|+|+|++|++++.+    +.+.+|++....    .....+.....+......+++  ++++|++++ .++.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~----g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~  121 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK----GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGS  121 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT----TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC----CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCE
Confidence            56677889999999999998875    799999875310    111122233334556777888  788777665 6789


Q ss_pred             EEEEecCCcceeeee------ec--------CcccEEEEEECCCCCEEEEee-CCCcEEEEecCCCE-------E-----
Q 020798           97 IRLWDVPTATCLKTL------IG--------HTNYVFCVNFNPQSNMIVSGA-FDETVRIWDVKTGK-------C-----  149 (321)
Q Consensus        97 i~iwd~~~~~~~~~~------~~--------~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~-------~-----  149 (321)
                      +.+|++.....+..+      .+        +...+.+++|+|+++++++++ .++.|++|++....       .     
T Consensus       122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence            999999754322211      11        123457899999999765554 57899999886433       1     


Q ss_pred             -EEEEeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEeCCCCcee--eeec--cCCCCCeEEEEEccCCCEEEEEecC--
Q 020798          150 -LKVLPAHSDPVTAVDFNRDGTMIVTSS-YDGLCRIWDASTGHCM--KTLI--DDENPPVSFVKFSPNGKFILVGTLD--  221 (321)
Q Consensus       150 -~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~--~~~~--~~~~~~~~~~~~~~~g~~l~~~~~d--  221 (321)
                       ......+......++|+|+++++++++ .++.|.+||+.++...  ..+.  .........++|+|+|++|+++..+  
T Consensus       202 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~  281 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA  281 (361)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred             ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence             111223345678999999999887776 6899999999866432  2221  1122345789999999998776654  


Q ss_pred             CeEEEEeCC--CCc--EEEEEeccCCceeEEEeEEEecCCeEEEEeC-CCCeEEEEEc--ccceEEEEec-CCCCCeEEE
Q 020798          222 NTLRLWNYS--TGK--ILKTYTGHTNSKYCISSTFSVTNGKYIVSGS-EDSCVYLWEL--QSRKVVQKLE-GHTDPVISV  293 (321)
Q Consensus       222 ~~i~i~d~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~--~~~~~~~~~~-~h~~~v~~~  293 (321)
                      +.|.+|++.  +++  .+..+.. ......   ....++|++|++++ .++.|.+|++  .++++..... .+...+.|+
T Consensus       282 ~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~---~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v  357 (361)
T 3scy_A          282 DGVAIFKVDETNGTLTKVGYQLT-GIHPRN---FIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCL  357 (361)
T ss_dssp             CEEEEEEECTTTCCEEEEEEEEC-SSCCCE---EEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEE
T ss_pred             CEEEEEEEcCCCCcEEEeeEecC-CCCCce---EEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEE
Confidence            899999985  444  3444433 112222   23347898777776 6789999755  4565543321 234567888


Q ss_pred             Eec
Q 020798          294 ASH  296 (321)
Q Consensus       294 ~~~  296 (321)
                      .|.
T Consensus       358 ~~~  360 (361)
T 3scy_A          358 KFV  360 (361)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=1.7e-22  Score=185.17  Aligned_cols=277  Identities=12%  Similarity=0.149  Sum_probs=184.4

Q ss_pred             EEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccc---cEEEEEECCCCCEEEEEeC---------CC
Q 020798           28 SVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQ---GVSDLVFSSDSRFLVSASD---------DK   95 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~~~~~~~~~~l~~~~~---------d~   95 (321)
                      .++|+|+|++++++ .|+.+++|+....        .....+..|..   .+.+++|||||++|++++.         ++
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~   90 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETG--------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA   90 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSC--------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCC--------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence            67999999766655 5999999987542        12223333332   3889999999999998876         78


Q ss_pred             cEEEEecCCccee--eeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE-eCCCCCe------------
Q 020798           96 TIRLWDVPTATCL--KTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL-PAHSDPV------------  160 (321)
Q Consensus        96 ~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~v------------  160 (321)
                      .|++||+.+++.+  ..+   ...+..++|+|||+.|+.+. ++.|++||+.+++..... ..+...+            
T Consensus        91 ~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee  166 (719)
T 1z68_A           91 TYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEE  166 (719)
T ss_dssp             EEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHH
T ss_pred             EEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeee
Confidence            9999999988752  222   24577899999999999875 789999999887654432 1222212            


Q ss_pred             -----eEEEEccCCCEEEEEeCCC----------------------------------eEEEEeCCCCcee--eee----
Q 020798          161 -----TAVDFNRDGTMIVTSSYDG----------------------------------LCRIWDASTGHCM--KTL----  195 (321)
Q Consensus       161 -----~~~~~~~~~~~l~~~~~dg----------------------------------~i~~~d~~~~~~~--~~~----  195 (321)
                           .+++|+|||+.|++++.|.                                  .+++||+.+++..  ..+    
T Consensus       167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~  246 (719)
T 1z68_A          167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA  246 (719)
T ss_dssp             TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred             cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence                 4899999999999887542                                  7889999887642  111    


Q ss_pred             -ccCCCCCeEEEEEccCCCEEEEEecC----CeEEEEe----CCCCcEEEEE----eccCCceeE--EEeEEEecCCeEE
Q 020798          196 -IDDENPPVSFVKFSPNGKFILVGTLD----NTLRLWN----YSTGKILKTY----TGHTNSKYC--ISSTFSVTNGKYI  260 (321)
Q Consensus       196 -~~~~~~~~~~~~~~~~g~~l~~~~~d----~~i~i~d----~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~l  260 (321)
                       ...+...+..++|+||++++++....    ..|.+||    +.+++....+    ..+......  .....+.+||+.+
T Consensus       247 ~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  326 (719)
T 1z68_A          247 MIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISY  326 (719)
T ss_dssp             HHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred             cCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeE
Confidence             11244457889999998877664432    2488899    7776543332    233322210  0012234678754


Q ss_pred             E--EeCCCC--eEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeec---CCccEEEcccc
Q 020798          261 V--SGSEDS--CVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALD---NDRTVKIWTQE  319 (321)
Q Consensus       261 ~--~~~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d---~~~~i~iw~~~  319 (321)
                      +  +...+|  .|.+||+.+++ ...+..+...+..+.+. +++.|+..+.+   .++.++||..+
T Consensus       327 ~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          327 YKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             EEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             EEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence            4  344555  56777776665 44566666678888777 77776666532   24778888764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.89  E-value=8.5e-22  Score=167.58  Aligned_cols=275  Identities=12%  Similarity=0.083  Sum_probs=179.6

Q ss_pred             EEEEEECCCCCEEEEecCC---ceEEEeeccccCCCCCCCCCccccccccccc-EEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           26 ISSVKFSHDGRLLASSSAD---KTLLTYSLSSISNSDSTPPSPLQKFTGHEQG-VSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        26 v~~~~~s~~g~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      +..++|||||++|+.....   ..+.+|++....         ...+..+... ...+.|+|+|++|+.++.++.|.+||
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---------~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d  108 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---------AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD  108 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---------EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---------EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence            6778999999998776443   356667654321         1122222222 23378999999999999999999999


Q ss_pred             cCCcceeeeeecCcccEEE-------------------EEECCCCCEEEEe-----eCCCcEEEEecCCCEEEEEEeCCC
Q 020798          102 VPTATCLKTLIGHTNYVFC-------------------VNFNPQSNMIVSG-----AFDETVRIWDVKTGKCLKVLPAHS  157 (321)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~~wd~~~~~~~~~~~~~~  157 (321)
                      +.+++.......+......                   +.++|+++.++.+     ..+..|++||+.+++..... .+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~  187 (396)
T 3c5m_A          109 LETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDT  187 (396)
T ss_dssp             TTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EES
T ss_pred             CCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCC
Confidence            9887654443333332222                   3467777766544     45678999999888755444 456


Q ss_pred             CCeeEEEEcc-CCCEEEEEeCC------CeEEEEeCCCCceeeeeccCC-CCCeEEEEEccCCCEEEEEecC-----CeE
Q 020798          158 DPVTAVDFNR-DGTMIVTSSYD------GLCRIWDASTGHCMKTLIDDE-NPPVSFVKFSPNGKFILVGTLD-----NTL  224 (321)
Q Consensus       158 ~~v~~~~~~~-~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~d-----~~i  224 (321)
                      ..+..+.|+| ++..++..+.+      ..|.+||+..+.. ..+.... ...+..+.|+|+|++|+.++.+     +.|
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI  266 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred             cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence            6788999999 78777666543      3688888876542 2222211 2246678999999987776543     449


Q ss_pred             EEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeC----------------CCCeEEEEEcccceEEEEecCCCC
Q 020798          225 RLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS----------------EDSCVYLWELQSRKVVQKLEGHTD  288 (321)
Q Consensus       225 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------~dg~i~vwd~~~~~~~~~~~~h~~  288 (321)
                      .+||+.+++........ . .   ...+.+++|++++.++                .++.|++||+.+++. ..+..+..
T Consensus       267 ~~~d~~~g~~~~l~~~~-~-~---~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~  340 (396)
T 3c5m_A          267 YKANPETLENEEVMVMP-P-C---SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHST  340 (396)
T ss_dssp             EEECTTTCCEEEEEECC-S-E---EEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCC
T ss_pred             EEEECCCCCeEEeeeCC-C-C---CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCC
Confidence            99999888654433211 1 1   1334432888877653                347899999987764 33444443


Q ss_pred             -----------CeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          289 -----------PVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       289 -----------~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                                 .+..++|+|+++.|+.++.+ ++...||.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-~~~~~l~~~  380 (396)
T 3c5m_A          341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-EGVPAIYIA  380 (396)
T ss_dssp             CCCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEEEE
T ss_pred             ccccccccccCCCCCceEccCCCeEEEEecC-CCCceEEEE
Confidence                       25678999999999888754 456666654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=8.7e-22  Score=176.10  Aligned_cols=231  Identities=14%  Similarity=0.065  Sum_probs=166.6

Q ss_pred             cccEEEEEECCCCCEEEEEeC-CCcEEEEecCCcceeeeeecCc-ccEEEEEECCCCCEEEEeeC---CCcEEEEecCC-
Q 020798           73 EQGVSDLVFSSDSRFLVSASD-DKTIRLWDVPTATCLKTLIGHT-NYVFCVNFNPQSNMIVSGAF---DETVRIWDVKT-  146 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~-  146 (321)
                      ...|.+++|+|||+.|++++. ||+++||++.+++. ..+..+. ..+..++|+|+ +.+++++.   +...++|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999998877 99999999966654 4454555 57899999999 67776664   45556654432 


Q ss_pred             --CEEEEEEeCCCCCeeEEEEccCCCE-EEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC--
Q 020798          147 --GKCLKVLPAHSDPVTAVDFNRDGTM-IVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD--  221 (321)
Q Consensus       147 --~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d--  221 (321)
                        +... .+.. .......+|+|+++. +++.+.++.+.+||+.+++..... ....   ..++|+|||++|+.++.+  
T Consensus        99 ~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-~~~~---~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           99 RPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-RLPG---FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             STTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-EESS---CEEEEEEETTEEEEEEEEET
T ss_pred             CCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-cCCC---ceEEECCCCCEEEEEEEcCC
Confidence              2222 2322 223456788888863 334444445559999887654332 2211   678999999999987766  


Q ss_pred             --CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC--eEEEEEcccceEEEEecCCCCCeEEEE---
Q 020798          222 --NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS--CVYLWELQSRKVVQKLEGHTDPVISVA---  294 (321)
Q Consensus       222 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~---  294 (321)
                        ..|++||+.+++.. .+..+....   ....+.|||+.|+++..++  .|++||+.+++.. .+.+|...+.+++   
T Consensus       173 ~~~~i~~~d~~~g~~~-~l~~~~~~~---~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~  247 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLR-VFDSGEGSF---SSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA  247 (582)
T ss_dssp             TEEEEEEEETTTCCCE-EECCSSCEE---EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred             CCeEEEEEcCCCCCce-EeecCCCcc---ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence              78999999888754 455554433   3334458999999888888  8999999988877 7778887888888   


Q ss_pred             -----ecCCCceEEEEeecCCccEEEccc
Q 020798          295 -----SHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       295 -----~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                           |+|||.++++++.  ++.++||+.
T Consensus       248 ~~~~~~spdg~~~~~~~~--~g~~~l~~~  274 (582)
T 3o4h_A          248 ITWLGYLPDGRLAVVARR--EGRSAVFID  274 (582)
T ss_dssp             EEEEEECTTSCEEEEEEE--TTEEEEEET
T ss_pred             ccceeEcCCCcEEEEEEc--CCcEEEEEE
Confidence                 9999987888774  478999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.88  E-value=5.4e-21  Score=173.56  Aligned_cols=290  Identities=12%  Similarity=0.044  Sum_probs=191.0

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEe--cCCceEEEeeccccCCCCCCCCCcccccccccccEE---------EEEEC--C
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASS--SADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVS---------DLVFS--S   83 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~--~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~---------~~~~~--~   83 (321)
                      +.+.+|...+..++|++++-+++..  +.++...+|.....        .....+..|...+.         ...|+  |
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP   88 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--------GAEESALPAPWNVRNRVFEYSGFPWAGVPRP   88 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--------SCEEESSCTTCCBCCCGGGTCCCCEEEECCS
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--------CCcceeCCCCccccccccccCCccceeeeec
Confidence            3467899999999999887777777  66888889975210        11233444444444         45454  9


Q ss_pred             CCCE-EEEEeC-CCcEEEEecC--C-cceeeeeec-----CcccEEEEEECCCCCEEEEeeCC----------CcEEEEe
Q 020798           84 DSRF-LVSASD-DKTIRLWDVP--T-ATCLKTLIG-----HTNYVFCVNFNPQSNMIVSGAFD----------ETVRIWD  143 (321)
Q Consensus        84 ~~~~-l~~~~~-d~~i~iwd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~~wd  143 (321)
                      ||+. |+.++. +..|.++++.  . +. ...+..     |...+..++|+|||+.|++++.+          ..|++||
T Consensus        89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~  167 (662)
T 3azo_A           89 AGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP  167 (662)
T ss_dssp             SSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred             CCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence            9998 776554 5567777765  2 33 344444     66778899999999999988876          5899999


Q ss_pred             cCC------CEEEEEEe-CCCCCeeEEEEccCCCEEEEEeCC--------CeEEEEeCC-CCc--eeeeeccCCCCCeEE
Q 020798          144 VKT------GKCLKVLP-AHSDPVTAVDFNRDGTMIVTSSYD--------GLCRIWDAS-TGH--CMKTLIDDENPPVSF  205 (321)
Q Consensus       144 ~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~-~~~--~~~~~~~~~~~~~~~  205 (321)
                      +.+      ++. ..+. .+...+..++|+|||+.|+.++.+        ..|++||+. ++.  ....+...+...+..
T Consensus       168 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~  246 (662)
T 3azo_A          168 LDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ  246 (662)
T ss_dssp             TTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE
T ss_pred             CCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc
Confidence            987      543 3444 455677889999999999877754        379999998 461  333443333456788


Q ss_pred             EEEccCCCEEEEEecCC--eEEEEeCCCCcEEEEEeccCCc---eeE--EEeEEEecCCeEEEEeCCCCeEEEE--Eccc
Q 020798          206 VKFSPNGKFILVGTLDN--TLRLWNYSTGKILKTYTGHTNS---KYC--ISSTFSVTNGKYIVSGSEDSCVYLW--ELQS  276 (321)
Q Consensus       206 ~~~~~~g~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~l~~~~~dg~i~vw--d~~~  276 (321)
                      +.|+|+|++++++..++  .|.+||+.+++.......+...   .+.  +......++++++++++. +.++||  |+.+
T Consensus       247 ~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~  325 (662)
T 3azo_A          247 AEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES  325 (662)
T ss_dssp             EEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred             eEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence            99999999777777777  6777777666654433222111   000  111222367888999888 999999  5444


Q ss_pred             ceEEEEecCCCCCeEEE-EecCCCceEEEEeecCCccEEEccc
Q 020798          277 RKVVQKLEGHTDPVISV-ASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       277 ~~~~~~~~~h~~~v~~~-~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      ++ +..+..|...+..+ +++++...+++++.+....|.+|+.
T Consensus       326 ~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~  367 (662)
T 3azo_A          326 GE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDT  367 (662)
T ss_dssp             TE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred             Cc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence            44 67788887778877 5554444455544332234444443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.88  E-value=1.1e-18  Score=144.84  Aligned_cols=242  Identities=14%  Similarity=0.196  Sum_probs=176.0

Q ss_pred             cccEEEEEECCCCCEEEEEeCC------------------------CcEEEEecCCcceeeeee-cCcccEEEEEECCCC
Q 020798           73 EQGVSDLVFSSDSRFLVSASDD------------------------KTIRLWDVPTATCLKTLI-GHTNYVFCVNFNPQS  127 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~~~d------------------------~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~  127 (321)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++...... ++......++++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3678999999999988888777                        479999998888765443 344568899999999


Q ss_pred             CEEEEeeCCCcEEEEecCCCE-EEEEE---------eCCCCCeeEEEEcc-CCCEEEEEe-CCCeEEEEeCCCCceeeee
Q 020798          128 NMIVSGAFDETVRIWDVKTGK-CLKVL---------PAHSDPVTAVDFNR-DGTMIVTSS-YDGLCRIWDASTGHCMKTL  195 (321)
Q Consensus       128 ~~l~~~~~dg~i~~wd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~~~d~~~~~~~~~~  195 (321)
                      +.+++...++.|++||..... .+..+         ..+......++++| ++.++++.+ .++.|++||. .+.....+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEe
Confidence            988888888999999976442 33333         22334678999999 788888776 6899999994 45544443


Q ss_pred             ccCC---------CCCeEEEEEccC-CCEEEEEecCCeEEEEeCCCCcEEEEEecc--CCceeEEEeEEEec------CC
Q 020798          196 IDDE---------NPPVSFVKFSPN-GKFILVGTLDNTLRLWNYSTGKILKTYTGH--TNSKYCISSTFSVT------NG  257 (321)
Q Consensus       196 ~~~~---------~~~~~~~~~~~~-g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~  257 (321)
                      ....         -.....++++|+ +.++++...++.|++||..+++.+..+...  ......+  .+ .+      ++
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~--~~-~pg~~~~~~g  258 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI--SY-IPGFLFAVNG  258 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE--EE-ETTEEEEEEC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee--ee-cCCEEEEeCC
Confidence            2111         123678999998 776677677889999999889888887532  2222222  22 23      23


Q ss_pred             eEEEEeCCCCeEEEEEcccceEEEEe---cCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          258 KYIVSGSEDSCVYLWELQSRKVVQKL---EGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       258 ~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ..+++...+..|++|+..+++.+..+   .++.....+++++|+|.++++..  .+++|++|+.+.
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~--~~~~I~~~~~~~  322 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA--HTNTVWKFTLTE  322 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES--SSCCEEEEEEEE
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC--CCCEEEEEeCCc
Confidence            33333345568999999999988877   35667789999999998888765  457899999753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=6.2e-20  Score=154.62  Aligned_cols=245  Identities=11%  Similarity=0.094  Sum_probs=162.4

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeecc-ccCCCCCCCCCcccccccccccEEEEEECCCCCE--EEEEe------
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLS-SISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRF--LVSAS------   92 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~--l~~~~------   92 (321)
                      +...+..++|+|+|++|++++.+ .+.+|++. ...      ...+.....+ +.+..++|+|+|++  ++++.      
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~------~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~  109 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE------IVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAV  109 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE------EEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC------EEEeeEeecC-CCCccEEECCCCCEEEEEEecCCccee
Confidence            34467889999999999988887 89999875 210      0001111111 22456889999994  44543      


Q ss_pred             -------CCCcEEEEecC-Ccceeeeee----cCcccEEEEEECCCCCEEEEee-CCCcEEEEecC-CCEEE--EEEe--
Q 020798           93 -------DDKTIRLWDVP-TATCLKTLI----GHTNYVFCVNFNPQSNMIVSGA-FDETVRIWDVK-TGKCL--KVLP--  154 (321)
Q Consensus        93 -------~d~~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~-~~~~~--~~~~--  154 (321)
                             .++.+.+|++. .++....+.    .+...+.+++|+|+|++++++. .++.|++||+. +++..  ..+.  
T Consensus       110 ~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~  189 (365)
T 1jof_A          110 YANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP  189 (365)
T ss_dssp             EEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred             ccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC
Confidence                   68899999997 455433332    2456788999999999887765 46799999998 66543  2333  


Q ss_pred             CCCCCeeEEEEccCCCEEEEEeC-CCeEEEEeCC--CCceee---eec--cCC--C-C-------CeEEEE-EccCCCEE
Q 020798          155 AHSDPVTAVDFNRDGTMIVTSSY-DGLCRIWDAS--TGHCMK---TLI--DDE--N-P-------PVSFVK-FSPNGKFI  215 (321)
Q Consensus       155 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~--~~~~~~---~~~--~~~--~-~-------~~~~~~-~~~~g~~l  215 (321)
                      .+...+..++|+|+|+.+++++. ++.+.+|+..  +++...   .+.  ...  . .       .+..++ |+|+|++|
T Consensus       190 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l  269 (365)
T 1jof_A          190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence            23566889999999998887765 7899999764  454321   111  111  0 1       367899 99999998


Q ss_pred             EEEecC-C-----eEEEEeCC-CCcEEEE---EeccCCceeEEEeEEEec---CCeEEEEeCCC-CeEEEEEcccc
Q 020798          216 LVGTLD-N-----TLRLWNYS-TGKILKT---YTGHTNSKYCISSTFSVT---NGKYIVSGSED-SCVYLWELQSR  277 (321)
Q Consensus       216 ~~~~~d-~-----~i~i~d~~-~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d-g~i~vwd~~~~  277 (321)
                      +++..+ +     .|.+|++. ++++...   ...+......+  .+. |   +|++|++++.+ +.|++|++...
T Consensus       270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~--a~s-p~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN--AVS-PCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC--CEE-ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccc--eec-CCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            876643 3     89999986 5665431   22222111111  222 5   78888888764 89999998765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.86  E-value=5e-18  Score=137.97  Aligned_cols=241  Identities=14%  Similarity=0.247  Sum_probs=171.5

Q ss_pred             cccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeee------cCcccEEEEEE-CCCCCEEEEeeC-CCcEEEE
Q 020798           71 GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI------GHTNYVFCVNF-NPQSNMIVSGAF-DETVRIW  142 (321)
Q Consensus        71 ~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~v~~~~~-~~~~~~l~~~~~-dg~i~~w  142 (321)
                      ++-..+.+++++++++++++...++.|.+||.. ++....+.      ++...+..+++ .++++.+++... ++.|++|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            344668899999999988888889999999987 44444442      23456789999 566666666533 7899999


Q ss_pred             ecCCCEEEEEEeC-CCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc-CCCCCeEEEEEccCCCEEEEEec
Q 020798          143 DVKTGKCLKVLPA-HSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID-DENPPVSFVKFSPNGKFILVGTL  220 (321)
Q Consensus       143 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~  220 (321)
                      | .+++....+.. +...+..+++.|+++++++...++.|.+||.. ++....+.. .....+..++++++|+++++...
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            9 55666655543 33568899999999988877788999999965 344443322 22345788999999997777777


Q ss_pred             CCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC-eEEEEEcccceEEEEecCCC--CCeEEEEecC
Q 020798          221 DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS-CVYLWELQSRKVVQKLEGHT--DPVISVASHP  297 (321)
Q Consensus       221 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p  297 (321)
                      ++.|++||. +++.+..+........ .......++|.++++...++ .|++||. .++.+..+..+.  ..+.+++++|
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~-p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~  260 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNY-PIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD  260 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCS-EEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCC-CcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC
Confidence            899999997 4566666644321111 22233446788888887776 9999995 456666665443  3478999999


Q ss_pred             CCceEEEEeecCCccEEEccccc
Q 020798          298 TENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       298 ~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +++++++ +  .++.|++|+...
T Consensus       261 ~g~l~vs-~--~~~~v~v~~~~~  280 (286)
T 1q7f_A          261 DGSVVLA-S--KDYRLYIYRYVQ  280 (286)
T ss_dssp             TTEEEEE-E--TTTEEEEEECSC
T ss_pred             CCcEEEE-C--CCCeEEEEEccc
Confidence            9998887 3  357999998753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.86  E-value=7.2e-18  Score=137.05  Aligned_cols=248  Identities=11%  Similarity=0.216  Sum_probs=172.7

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEE-CCCCCEEEEEeC-CCcE
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVF-SSDSRFLVSASD-DKTI   97 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-~~~~~~l~~~~~-d~~i   97 (321)
                      .+|...+.+++++|+|+++++...++.|.+|+...........   .....+|...+..+++ .++++++++... ++.|
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~---~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGE---CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI  102 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECC---BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecc---cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence            3567789999999999988888889999999764211000000   0001234456889999 577776666543 7899


Q ss_pred             EEEecCCcceeeeee-cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe--CCCCCeeEEEEccCCCEEEE
Q 020798           98 RLWDVPTATCLKTLI-GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP--AHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~  174 (321)
                      .+|| .+++.+..+. .+...+..++++|+++.+++...++.|++||.. ++....+.  .+...+..++++|+++++++
T Consensus       103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             EEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence            9999 5555555443 234568899999999988887788999999964 45455553  33456889999999988777


Q ss_pred             EeCCCeEEEEeCCCCceeeeeccC-CCCCeEEEEEccCCCEEEEEecCC-eEEEEeCCCCcEEEEEeccCCceeEEEeEE
Q 020798          175 SSYDGLCRIWDASTGHCMKTLIDD-ENPPVSFVKFSPNGKFILVGTLDN-TLRLWNYSTGKILKTYTGHTNSKYCISSTF  252 (321)
Q Consensus       175 ~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  252 (321)
                      ...++.|++||... +.+..+... ....+..++++++|+++++...++ .|.+||. +++.+..+..+........ ..
T Consensus       181 ~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~-i~  257 (286)
T 1q7f_A          181 DNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD-VA  257 (286)
T ss_dssp             EGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE-EE
T ss_pred             ECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCccee-EE
Confidence            77899999999754 444444322 124578899999999888777775 9999995 5667777655433222222 23


Q ss_pred             EecCCeEEEEeCCCCeEEEEEccc
Q 020798          253 SVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      ..++|+++++ +.++.|++|++..
T Consensus       258 ~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          258 LMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EETTTEEEEE-ETTTEEEEEECSC
T ss_pred             ECCCCcEEEE-CCCCeEEEEEccc
Confidence            3468887777 5689999999754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.86  E-value=1.3e-18  Score=146.19  Aligned_cols=267  Identities=13%  Similarity=0.147  Sum_probs=183.9

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEec----------CCceEEEeeccccCCCCCCCCCccccccc------ccccEEE
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSS----------ADKTLLTYSLSSISNSDSTPPSPLQKFTG------HEQGVSD   78 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~------h~~~i~~   78 (321)
                      +...+..+..+  .++|+|||++|+++.          .++.|.+||.....        .+..+..      +......
T Consensus        43 ~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~--------~~~~i~~~~~~~~~g~~p~~  112 (361)
T 2oiz_A           43 FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT--------FEKEISLPPKRVQGLNYDGL  112 (361)
T ss_dssp             EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC--------EEEEEEECTTBCCBCCCGGG
T ss_pred             EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc--------EEEEEEcCccccccCCCcce
Confidence            34455555555  899999999999876          36779999875321        2222221      2234667


Q ss_pred             EEECCCCCEEEEEeC--CCcEEEEecCCcceeee-eecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCC-CEEEEE-
Q 020798           79 LVFSSDSRFLVSASD--DKTIRLWDVPTATCLKT-LIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKT-GKCLKV-  152 (321)
Q Consensus        79 ~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~-~~~~~~-  152 (321)
                      ++++|+|++|+++..  +++|.+||+.+++.+.. +.. .. ...+.+.|++ ..+++.+.||.+.+|+... ++.... 
T Consensus       113 i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~  190 (361)
T 2oiz_A          113 FRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS  190 (361)
T ss_dssp             EEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE
T ss_pred             EEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec
Confidence            999999999998763  57899999999987766 432 22 2335567765 5678888999999999865 443311 


Q ss_pred             -----EeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce--eeeeccC------C---CCCeEEEEEccCCCEEE
Q 020798          153 -----LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC--MKTLIDD------E---NPPVSFVKFSPNGKFIL  216 (321)
Q Consensus       153 -----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~------~---~~~~~~~~~~~~g~~l~  216 (321)
                           +.....++ .+.+.+++..++..+.++.+.++|+.....  ...+...      .   ......++++|+++.++
T Consensus       191 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ly  269 (361)
T 2oiz_A          191 RSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMY  269 (361)
T ss_dssp             ECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEE
T ss_pred             cccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEE
Confidence                 12222222 233467777777788899999999865431  1111000      0   01112368999988887


Q ss_pred             EEec-----------CCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc--eEEEEe
Q 020798          217 VGTL-----------DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR--KVVQKL  283 (321)
Q Consensus       217 ~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~  283 (321)
                      ++..           .+.|.+||+.+++.+..+..+.  ...+   ...++|++|++++. +.|.+||..++  +.+..+
T Consensus       270 v~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~i---a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSM---TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             EEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEE---EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             EEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEE---EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence            7654           3489999999999999988765  3333   23478889988887 99999999999  999888


Q ss_pred             cCCCCCeEEEEecCCCc
Q 020798          284 EGHTDPVISVASHPTEN  300 (321)
Q Consensus       284 ~~h~~~v~~~~~~p~~~  300 (321)
                      ..+...-..++++|+|+
T Consensus       344 ~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          344 EGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TTSCSSEEEEEECCCSC
T ss_pred             ccCCCCcEEEEecCCCC
Confidence            76777779999999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=7.1e-20  Score=168.11  Aligned_cols=239  Identities=12%  Similarity=0.093  Sum_probs=163.5

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCccc-----EEEEEECCCCCEEEEeeCC---------CcEEE
Q 020798           76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNY-----VFCVNFNPQSNMIVSGAFD---------ETVRI  141 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------g~i~~  141 (321)
                      ..++.|+|++++++++  |+.|++||+.++++...+.+|...     .....|+|||++|+.++.+         +.+.+
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            4578999999988886  899999999999876666666532     2347889999999988775         56779


Q ss_pred             EecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCe-----------------E
Q 020798          142 WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPV-----------------S  204 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-----------------~  204 (321)
                      ||+.+++... +..+...+...+|+|||+.|+.+. ++.|++||+.++...+.........+                 .
T Consensus        97 ~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~  174 (740)
T 4a5s_A           97 YDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (740)
T ss_dssp             EETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             EECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence            9999987543 556677899999999999998874 68999999987764432221111111                 2


Q ss_pred             EEEEccCCCEEEEEecCC------------------------------------eEEEEeCCC---Cc--EEEEEecc--
Q 020798          205 FVKFSPNGKFILVGTLDN------------------------------------TLRLWNYST---GK--ILKTYTGH--  241 (321)
Q Consensus       205 ~~~~~~~g~~l~~~~~d~------------------------------------~i~i~d~~~---~~--~~~~~~~~--  241 (321)
                      .+.|+|||+.|+.+..|.                                    .|++||+.+   ++  ....+...  
T Consensus       175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~  254 (740)
T 4a5s_A          175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS  254 (740)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred             ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence            478999999998875321                                    478888887   62  22233220  


Q ss_pred             --CCceeEEEeEEEecCCeEEEEe----CCCCeEEEEEcccce----EE--EEe--cCCCCCeE-----EEEecCCCceE
Q 020798          242 --TNSKYCISSTFSVTNGKYIVSG----SEDSCVYLWELQSRK----VV--QKL--EGHTDPVI-----SVASHPTENII  302 (321)
Q Consensus       242 --~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~~----~~--~~~--~~h~~~v~-----~~~~~p~~~~l  302 (321)
                        ....+ +....+.+||+.++..    ..+..|++||+.+++    +.  ..+  .+|...|.     +.+|+|||+.|
T Consensus       255 ~~~~~~~-~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l  333 (740)
T 4a5s_A          255 MLIGDHY-LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF  333 (740)
T ss_dssp             HHTSCEE-EEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred             CCCCCeE-EEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence              01122 3333334788866543    234479999998876    21  122  44655554     78999999988


Q ss_pred             E-EEee-cCCccEEEcccc
Q 020798          303 A-SGAL-DNDRTVKIWTQE  319 (321)
Q Consensus       303 ~-s~~~-d~~~~i~iw~~~  319 (321)
                      + ..+. ++...|.+|+.+
T Consensus       334 ~~~~s~~~G~~~l~~~~~~  352 (740)
T 4a5s_A          334 YKIISNEEGYRHICYFQID  352 (740)
T ss_dssp             EEEEECTTSCEEEEEEETT
T ss_pred             EEEEEcCCCceEEEEEECC
Confidence            7 6653 233467777764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=1.5e-19  Score=165.87  Aligned_cols=280  Identities=10%  Similarity=0.125  Sum_probs=177.6

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccc-----cEEEEEECCCCCEEEEEeCC-----
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQ-----GVSDLVFSSDSRFLVSASDD-----   94 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~i~~~~~~~~~~~l~~~~~d-----   94 (321)
                      ....++|+|||++++++  |+.|++|++....        ....+.+|..     ....+.|||||++|+.++.+     
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r   87 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGN--------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR   87 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCC--------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCc--------eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence            35578999999999886  8999999876432        1222333332     23458899999999988876     


Q ss_pred             ----CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE-eCCCCCe---------
Q 020798           95 ----KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL-PAHSDPV---------  160 (321)
Q Consensus        95 ----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~v---------  160 (321)
                          +.+.+||+.+++.. .+..+...+...+|+|||+.|+.+. ++.|++|++.+++..+.. ..+...+         
T Consensus        88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             EccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence                56779999998753 4666777899999999999998874 689999999887644321 1222112         


Q ss_pred             --------eEEEEccCCCEEEEEeCCC------------------------------------eEEEEeCCC---Cc--e
Q 020798          161 --------TAVDFNRDGTMIVTSSYDG------------------------------------LCRIWDAST---GH--C  191 (321)
Q Consensus       161 --------~~~~~~~~~~~l~~~~~dg------------------------------------~i~~~d~~~---~~--~  191 (321)
                              ..+.|+|||+.|+..+.|.                                    .+++||+.+   ++  .
T Consensus       166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~  245 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT  245 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred             cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence                    3589999999988775221                                    578899887   63  1


Q ss_pred             eeeecc-----CCCCCeEEEEEccCCCEEEEEec----CCeEEEEeCCCCc----E--EEEE--eccCCceeE--EEeEE
Q 020798          192 MKTLID-----DENPPVSFVKFSPNGKFILVGTL----DNTLRLWNYSTGK----I--LKTY--TGHTNSKYC--ISSTF  252 (321)
Q Consensus       192 ~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~----d~~i~i~d~~~~~----~--~~~~--~~~~~~~~~--~~~~~  252 (321)
                      ...+..     .+...+..++|+|||+.++....    +..|.+||+.+++    .  +..+  ..+......  .....
T Consensus       246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~  325 (740)
T 4a5s_A          246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH  325 (740)
T ss_dssp             EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred             EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence            222221     14445788999999997665533    2379999998876    1  1111  222211110  00122


Q ss_pred             EecCCeEEE-EeC-CC--CeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEE-EEee--cCCccEEEccc
Q 020798          253 SVTNGKYIV-SGS-ED--SCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA-SGAL--DNDRTVKIWTQ  318 (321)
Q Consensus       253 ~~~~~~~l~-~~~-~d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~~~--d~~~~i~iw~~  318 (321)
                      +.+||+.++ ..+ .+  ..|++||+..++.. .+......|..+.. ++++.|+ ++..  ++.+...||.+
T Consensus       326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v  396 (740)
T 4a5s_A          326 FTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI  396 (740)
T ss_dssp             ECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             EcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence            347888766 444 33  46888898766543 44444455666542 3455444 4433  33344556554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.84  E-value=3e-18  Score=142.37  Aligned_cols=268  Identities=11%  Similarity=0.074  Sum_probs=183.3

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT  104 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  104 (321)
                      .|.+++|+|++..++..+.++.+..|.-           .....+..+...+.+++|++++++++++..++.|.+||..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~   75 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTITA-----------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET   75 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEEEC-----------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             ccceeeecCCccceeEEeecccCccccc-----------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence            4667889999888877777888888721           12334455666788999999999877888899999999988


Q ss_pred             cceeeeeecCcccEEEEEECCCCCEEEEeeCC----CcEEEEecCCCEEEEEEe--CCCCCeeEEEEccCCCEEEEEeC-
Q 020798          105 ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD----ETVRIWDVKTGKCLKVLP--AHSDPVTAVDFNRDGTMIVTSSY-  177 (321)
Q Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-  177 (321)
                      ++.......+...+.+++++|+++++++...+    +.|.+||..++.....+.  .+...+..++++|+++++++... 
T Consensus        76 ~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  155 (333)
T 2dg1_A           76 KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG  155 (333)
T ss_dssp             CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred             CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence            77544333566779999999999888777666    689999988776443332  23456889999999987776653 


Q ss_pred             -----CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEeCCC-CcEEEEE-----eccCCce
Q 020798          178 -----DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-TLDNTLRLWNYST-GKILKTY-----TGHTNSK  245 (321)
Q Consensus       178 -----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~d~~i~i~d~~~-~~~~~~~-----~~~~~~~  245 (321)
                           .+.|..+|..+++... +.. ....+..++|+|+|+.++++ ..++.|.+||+.+ +..+..+     ...... 
T Consensus       156 ~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-  232 (333)
T 2dg1_A          156 YSTNPLGGVYYVSPDFRTVTP-IIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-  232 (333)
T ss_dssp             BTTBCCEEEEEECTTSCCEEE-EEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-
T ss_pred             cccCCCceEEEEeCCCCEEEE-eec-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-
Confidence                 3567777766544322 211 12246789999999866554 4578999999863 3322211     101110 


Q ss_pred             eEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCC------CeEEEEecCCCceEEEEee
Q 020798          246 YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD------PVISVASHPTENIIASGAL  307 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~------~v~~~~~~p~~~~l~s~~~  307 (321)
                      .........++|.++++...++.|.+||. .++.+..+..+..      .+.+++|+|++..|..++.
T Consensus       233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence            12223344567888777777889999998 4566666654432      6899999999866655443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=8.4e-18  Score=139.50  Aligned_cols=242  Identities=15%  Similarity=0.180  Sum_probs=172.2

Q ss_pred             CcccEEEEEECCCCCEEEEecCC------------------------ceEEEeeccccCCCCCCCCCccccc-ccccccE
Q 020798           22 HLRAISSVKFSHDGRLLASSSAD------------------------KTLLTYSLSSISNSDSTPPSPLQKF-TGHEQGV   76 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d------------------------~~v~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i   76 (321)
                      -.+.+..++++|+|+++++.+.+                        +.|.+||....        ..+..+ .++-..+
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~p   93 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--------EILQSSGKNLFYLP   93 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--------CEEEEECTTTCSSE
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--------eEEeccCCCccCCc
Confidence            35689999999999999888777                        36777765321        111112 1334568


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEecCCcc-eeeee---------ecCcccEEEEEECC-CCCEEEEee-CCCcEEEEec
Q 020798           77 SDLVFSSDSRFLVSASDDKTIRLWDVPTAT-CLKTL---------IGHTNYVFCVNFNP-QSNMIVSGA-FDETVRIWDV  144 (321)
Q Consensus        77 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~~wd~  144 (321)
                      ..++++++|+++++...++.|++|+..... .+..+         .++......++++| +++.+++.+ .++.|++|+ 
T Consensus        94 ~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-  172 (329)
T 3fvz_A           94 HGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-  172 (329)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred             eEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence            899999999988888889999999986542 33333         23344688999999 777777776 689999999 


Q ss_pred             CCCEEEEEEeCC----------CCCeeEEEEccC-CCEEEEEeCCCeEEEEeCCCCceeeeecc-CCCCCeEEEEEccCC
Q 020798          145 KTGKCLKVLPAH----------SDPVTAVDFNRD-GTMIVTSSYDGLCRIWDASTGHCMKTLID-DENPPVSFVKFSPNG  212 (321)
Q Consensus       145 ~~~~~~~~~~~~----------~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~g  212 (321)
                      .+++.+..+...          -.....++++|+ +.++++...++.|++||..+++.+..+.. .....+..++++| +
T Consensus       173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g  251 (329)
T 3fvz_A          173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G  251 (329)
T ss_dssp             TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T
T ss_pred             CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C
Confidence            456666555321          123789999998 77777777899999999987777666532 2344577888998 4


Q ss_pred             CEEEEE-------ecCCeEEEEeCCCCcEEEEEe---ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          213 KFILVG-------TLDNTLRLWNYSTGKILKTYT---GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       213 ~~l~~~-------~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      ..+...       ..+..|++||..+++.+..+.   .+......   ....++|.++++...++.|++|++..
T Consensus       252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~---ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD---IVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE---EEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE---EEECCCCCEEEEECCCCEEEEEeCCc
Confidence            333332       234589999999999988874   22222222   33457888889999999999999753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.84  E-value=4.2e-18  Score=155.67  Aligned_cols=245  Identities=12%  Similarity=0.121  Sum_probs=167.4

Q ss_pred             cccccEEEEEECCCCCEEEEEeCCC-----cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCc-------
Q 020798           71 GHEQGVSDLVFSSDSRFLVSASDDK-----TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDET-------  138 (321)
Q Consensus        71 ~h~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------  138 (321)
                      +|...+..++|||||++|+.+..++     .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3445688999999999998765543     8999999998765432222 22567899999999988887765       


Q ss_pred             ---------EEEEecCCCE----EEEEEeCCCCCeeEEEEccCCCEEEEEeC-----CCeEEEEeCCC------Cc-eee
Q 020798          139 ---------VRIWDVKTGK----CLKVLPAHSDPVTAVDFNRDGTMIVTSSY-----DGLCRIWDAST------GH-CMK  193 (321)
Q Consensus       139 ---------i~~wd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~------~~-~~~  193 (321)
                               |++|++.+++    .+.....+...+..+.|+|+|+.++..+.     +..+++||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     9999998765    22222224455789999999998887654     56899999876      42 233


Q ss_pred             eeccCCCCCeEEEEEccCCCEEEEEecC----CeEEEEeCCCCcE--EEEEeccCCceeEEEeEEEecCCeEEEEeCCCC
Q 020798          194 TLIDDENPPVSFVKFSPNGKFILVGTLD----NTLRLWNYSTGKI--LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS  267 (321)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~g~~l~~~~~d----~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  267 (321)
                      .+.... ..... .|+|+|+.|+..+..    ..|.+||+.++..  ...+..+.... .+......+++.++++...++
T Consensus       281 ~l~~~~-~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          281 KLIDNF-EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD-VLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             EEECSS-SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC-EEEEEEEETTTEEEEEEEETT
T ss_pred             EeeCCC-CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC-eEEEEEEEcCCEEEEEEEECC
Confidence            333322 22333 588898888776543    3699999987641  23333333211 122222235678888888888


Q ss_pred             e--EEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEE--eecCCccEEEcccc
Q 020798          268 C--VYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG--ALDNDRTVKIWTQE  319 (321)
Q Consensus       268 ~--i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~--~~d~~~~i~iw~~~  319 (321)
                      .  |.+|++.+++.+..+..+...+.+++++|++..++..  +....+.|.+||++
T Consensus       358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  413 (710)
T 2xdw_A          358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT  413 (710)
T ss_dssp             EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred             EEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence            5  5667776777777788787789999999998765533  44456789999875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.84  E-value=1.8e-18  Score=156.95  Aligned_cols=267  Identities=16%  Similarity=0.158  Sum_probs=167.8

Q ss_pred             eeccCCcccEE---------EEEEC--CCCCE-EEEecC-CceEEEeeccccCCCCCCCCCccccccc-----ccccEEE
Q 020798           17 QTLNGHLRAIS---------SVKFS--HDGRL-LASSSA-DKTLLTYSLSSISNSDSTPPSPLQKFTG-----HEQGVSD   78 (321)
Q Consensus        17 ~~~~~h~~~v~---------~~~~s--~~g~~-l~~~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~i~~   78 (321)
                      +.+..|...+.         ..+|+  |||++ |+..+. +..|.++++..      ........+..     |...+..
T Consensus        61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~------~g~~~~~~l~~~~~~~~~~~~~~  134 (662)
T 3azo_A           61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDA------PGGAVPRPLTPVSAVGGGLRWAD  134 (662)
T ss_dssp             EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTS------TTCCCCEECSCCCCSTTCEEEEE
T ss_pred             ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCC------CCCCCCEeccCCccCCCCccccC
Confidence            44556655555         55565  99998 776554 45555554320      00011222333     5677889


Q ss_pred             EEECCCCCEEEEEeCC----------CcEEEEecCC------cceeeeee-cCcccEEEEEECCCCCEEEEeeCC-----
Q 020798           79 LVFSSDSRFLVSASDD----------KTIRLWDVPT------ATCLKTLI-GHTNYVFCVNFNPQSNMIVSGAFD-----  136 (321)
Q Consensus        79 ~~~~~~~~~l~~~~~d----------~~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----  136 (321)
                      ++|+|||+.|++++.+          ..|++||+.+      ++. ..+. .+...+..++|+|||++|+.++.+     
T Consensus       135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~  213 (662)
T 3azo_A          135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP  213 (662)
T ss_dssp             EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCT
T ss_pred             cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCC
Confidence            9999999999988876          5799999988      553 4454 555677889999999999877754     


Q ss_pred             ---CcEEEEecC-CC---EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC--eEEEEeCCCCceeeeeccCCCC------
Q 020798          137 ---ETVRIWDVK-TG---KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG--LCRIWDASTGHCMKTLIDDENP------  201 (321)
Q Consensus       137 ---g~i~~wd~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~------  201 (321)
                         ..|++||+. ++   +.......+...+..++|+|+|++++++..++  .|.+||+.+++... +......      
T Consensus       214 ~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w  292 (662)
T 3azo_A          214 WEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLW  292 (662)
T ss_dssp             TTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCC
T ss_pred             CCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee-cccccccccCccc
Confidence               379999998 56   44444455567899999999999777777788  67777776655332 2211111      


Q ss_pred             --CeEEEEEccCCCEEEEEecCCeEEEE--eCCCCcEEEEEeccCCceeEEEeEEEecCCeE-EEEeCCCC--eEEEEEc
Q 020798          202 --PVSFVKFSPNGKFILVGTLDNTLRLW--NYSTGKILKTYTGHTNSKYCISSTFSVTNGKY-IVSGSEDS--CVYLWEL  274 (321)
Q Consensus       202 --~~~~~~~~~~g~~l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg--~i~vwd~  274 (321)
                        .+..++|+|++++++++.. +.++||  |+.+++ +..+..+......   .+....+.+ +++++.+.  .|.++|+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~---~~s~~~~~~~~~~~~~~~~~~i~~~d~  367 (662)
T 3azo_A          293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAA---TLTVSGTRAVGVAASPRTAYEVVELDT  367 (662)
T ss_dssp             STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEE---EEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred             cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEE---EEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence              1456889999999999888 988888  655554 5566555433222   212223333 33444454  4555566


Q ss_pred             ccceEEEEecCCCCCeEEEEec
Q 020798          275 QSRKVVQKLEGHTDPVISVASH  296 (321)
Q Consensus       275 ~~~~~~~~~~~h~~~v~~~~~~  296 (321)
                      .+++.......+...+....+.
T Consensus       368 ~~g~~~~l~~~~~~~~~~~~~~  389 (662)
T 3azo_A          368 VTGRARTIGARHTDPVDPAYYP  389 (662)
T ss_dssp             TTCCEEEEESCCCCSSCGGGSC
T ss_pred             CCCceEEeecCCcccCCccccC
Confidence            6665433223343333333333

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=1.1e-18  Score=147.93  Aligned_cols=251  Identities=15%  Similarity=0.104  Sum_probs=164.8

Q ss_pred             ccccccccccEEE-----EEECCCCCEEEEEeC-CC--cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCC
Q 020798           66 LQKFTGHEQGVSD-----LVFSSDSRFLVSASD-DK--TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE  137 (321)
Q Consensus        66 ~~~~~~h~~~i~~-----~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  137 (321)
                      ...++.|......     .+|+|||++|+.++. ++  .|.+||+.+++......++...+....|+|+++.|+.++.++
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~  102 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR  102 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence            3444555544444     789999999998887 66  488889988876655555655555678999999999999999


Q ss_pred             cEEEEecCCCEEEEEEeCCCCCeeEEE--EccCCCEEEEE----------------------eCCCeEEEEeCCCCceee
Q 020798          138 TVRIWDVKTGKCLKVLPAHSDPVTAVD--FNRDGTMIVTS----------------------SYDGLCRIWDASTGHCMK  193 (321)
Q Consensus       138 ~i~~wd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~~dg~i~~~d~~~~~~~~  193 (321)
                      .|++||+.+++.......+...+....  ++|+++.++..                      ..+..|.+||+.+++...
T Consensus       103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~  182 (388)
T 3pe7_A          103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV  182 (388)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE
T ss_pred             eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE
Confidence            999999999887766666655444333  48999887643                      234679999998876433


Q ss_pred             eeccCCCCCeEEEEEcc-CCCEEEEEecC------CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCC-
Q 020798          194 TLIDDENPPVSFVKFSP-NGKFILVGTLD------NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSE-  265 (321)
Q Consensus       194 ~~~~~~~~~~~~~~~~~-~g~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  265 (321)
                      ..  .....+..+.|+| +|+.|+....+      ..|.++|...++.. .+..+..... +......+||+.|+..+. 
T Consensus       183 l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~-~~~~~~spdg~~l~~~~~~  258 (388)
T 3pe7_A          183 IL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGES-CTHEFWVPDGSALVYVSYL  258 (388)
T ss_dssp             EE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEE-EEEEEECTTSSCEEEEEEE
T ss_pred             ee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcc-cccceECCCCCEEEEEecC
Confidence            22  2234578899999 99988876653      37888887665433 3322222112 222334578886654332 


Q ss_pred             ----CCeEEEEEcccceE--EEEecCCCCC---eEEEEecCCCceEEEEee-------cCCccEEEccccc
Q 020798          266 ----DSCVYLWELQSRKV--VQKLEGHTDP---VISVASHPTENIIASGAL-------DNDRTVKIWTQEK  320 (321)
Q Consensus       266 ----dg~i~vwd~~~~~~--~~~~~~h~~~---v~~~~~~p~~~~l~s~~~-------d~~~~i~iw~~~~  320 (321)
                          ++.|++||+.+++.  +..+.++...   ....+|+|||+.|+....       +++..|++||.+.
T Consensus       259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~  329 (388)
T 3pe7_A          259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN  329 (388)
T ss_dssp             TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred             CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence                22499999988763  3334331111   122479999998886532       3456899999763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.83  E-value=1.7e-15  Score=123.59  Aligned_cols=281  Identities=10%  Similarity=0.056  Sum_probs=190.4

Q ss_pred             ccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEE
Q 020798           19 LNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIR   98 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~   98 (321)
                      +..+...+.+++++|+|++.++...++.+..|+... ..       .......+...+..+++.++++++++...++.|.
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-~~-------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~   81 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLDG-KI-------TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIG   81 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-------EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCC-Ce-------EEecCCcccCceeeEEECCCCCEEEeCCCCCeEE
Confidence            445667899999999999887777678898887541 10       0001112346789999999999888777788899


Q ss_pred             EEecCCcceeeeee--cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE-EeCCCCCeeEEEEccCCCEEEEE
Q 020798           99 LWDVPTATCLKTLI--GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV-LPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus        99 iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      .|+.. ++. ..+.  .....+..++++++++.+++...++.|..||. +++.... .......+..+++.++++.+++.
T Consensus        82 ~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  158 (299)
T 2z2n_A           82 RITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTE  158 (299)
T ss_dssp             EECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred             EECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEe
Confidence            99976 332 2222  24456889999999988887777889999998 5543322 23344568899999999887777


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEec
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVT  255 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (321)
                      ..++.+..||. +++............+..++++++|+++++...++.|.+||. +++... +....... .+......+
T Consensus       159 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~-~~~~i~~~~  234 (299)
T 2z2n_A          159 NQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNA-RPHAITAGA  234 (299)
T ss_dssp             TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTC-CEEEEEECS
T ss_pred             CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCC-CceeEEECC
Confidence            77789999998 555433222223345778999999997766666789999998 666443 32211111 122333446


Q ss_pred             CCeEEEEeCCCCeEEEEEcccceEEE-EecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          256 NGKYIVSGSEDSCVYLWELQSRKVVQ-KLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +|..+++...++.|..||. +++... .+..+...+.++++ +++.++++.+  . +.|..++.+
T Consensus       235 ~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~--~-~~l~~~~~~  294 (299)
T 2z2n_A          235 GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME--C-DKIGKLTLI  294 (299)
T ss_dssp             TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET--T-TEEEEEEEC
T ss_pred             CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec--C-CcEEEEEcC
Confidence            7887777667889999998 444322 23445567899999 8998888754  2 345555554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=3.4e-18  Score=143.52  Aligned_cols=270  Identities=12%  Similarity=0.111  Sum_probs=179.4

Q ss_pred             CCCCEEEEec------CCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe----------CCCc
Q 020798           33 HDGRLLASSS------ADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS----------DDKT   96 (321)
Q Consensus        33 ~~g~~l~~~~------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~----------~d~~   96 (321)
                      ++++++++..      .|+.+.+||....        +.+..+..+..+  .++|+|++++++++.          .++.
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~   82 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNG--------KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDV   82 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTC--------CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCC--------eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCE
Confidence            3566665543      3678999986432        223344444444  899999999998876          2567


Q ss_pred             EEEEecCCcceeeeeecC------cccEEEEEECCCCCEEEEeeC--CCcEEEEecCCCEEEEE-EeCCCCCeeEEEEcc
Q 020798           97 IRLWDVPTATCLKTLIGH------TNYVFCVNFNPQSNMIVSGAF--DETVRIWDVKTGKCLKV-LPAHSDPVTAVDFNR  167 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~  167 (321)
                      |.+||..+.+.+..+...      ......++++|+|++|+++..  ++.|.+||+.+++.+.. ++..  ....+.+.|
T Consensus        83 v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p  160 (361)
T 2oiz_A           83 VEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQP  160 (361)
T ss_dssp             EEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECT
T ss_pred             EEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcC
Confidence            999999988877666432      234567899999999988764  57899999999988777 5432  223355677


Q ss_pred             CC-CEEEEEeCCCeEEEEeCCC-Cceeeee-----ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc--EEEEE
Q 020798          168 DG-TMIVTSSYDGLCRIWDAST-GHCMKTL-----IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK--ILKTY  238 (321)
Q Consensus       168 ~~-~~l~~~~~dg~i~~~d~~~-~~~~~~~-----~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~--~~~~~  238 (321)
                      ++ ..+++.+.||.+.+++... ++.....     ......+ ..+.+++++..++..+.++.+.++|+....  .+..+
T Consensus       161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~  239 (361)
T 2oiz_A          161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPW  239 (361)
T ss_dssp             TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEE
T ss_pred             CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccc
Confidence            65 5778888999999998754 4433111     1111111 123446777777777788999999986543  22222


Q ss_pred             eccC------Cc-eeEEEeEEEecCCeEEEEeCC-----------CCeEEEEEcccceEEEEecCCCCCeEEEEecCCCc
Q 020798          239 TGHT------NS-KYCISSTFSVTNGKYIVSGSE-----------DSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN  300 (321)
Q Consensus       239 ~~~~------~~-~~~~~~~~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~  300 (321)
                      ....      .. ..........+++..++++..           .+.|.+||+.+++.+..+..+.  ..+++|+|+|+
T Consensus       240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~  317 (361)
T 2oiz_A          240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRN  317 (361)
T ss_dssp             ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTT
T ss_pred             cccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCC
Confidence            1100      00 000000122356555554422           3589999999999999998877  89999999999


Q ss_pred             eEEEEeecCCccEEEccccc
Q 020798          301 IIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       301 ~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +|++++  . +.|.+||.+.
T Consensus       318 ~l~v~n--~-~~v~v~D~~t  334 (361)
T 2oiz_A          318 LMLTLD--G-GNVNVYDISQ  334 (361)
T ss_dssp             EEEEEC--S-SCEEEEECSS
T ss_pred             EEEEeC--C-CeEEEEECCC
Confidence            998876  2 7899999763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.83  E-value=1.6e-17  Score=138.78  Aligned_cols=259  Identities=14%  Similarity=0.193  Sum_probs=166.5

Q ss_pred             cccEEEEEECCCCCEEEEec---------CCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC
Q 020798           23 LRAISSVKFSHDGRLLASSS---------ADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD   93 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~---------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~   93 (321)
                      ...+..+++  ||++++...         .++.|.+|++....         ...+    ..+..+.|+|||++|+..+.
T Consensus        14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~---------~~~l----~~~~~~~~SpDg~~la~~~~   78 (347)
T 2gop_A           14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA---------RRFI----ENATMPRISPDGKKIAFMRA   78 (347)
T ss_dssp             SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC---------EEEE----ESCEEEEECTTSSEEEEEEE
T ss_pred             eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc---------eEEc----ccCCCeEECCCCCEEEEEEe
Confidence            356777888  898887642         25667777765321         1122    45788999999999987765


Q ss_pred             C---C--cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCC---------------------------CcEEE
Q 020798           94 D---K--TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD---------------------------ETVRI  141 (321)
Q Consensus        94 d---~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~i~~  141 (321)
                      +   +  .|.+|++.+++...... +.. +..+.|+|+++.|+.++.+                           ..|++
T Consensus        79 ~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  156 (347)
T 2gop_A           79 NEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWI  156 (347)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEE
T ss_pred             ccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEE
Confidence            4   3  47888888776544333 334 8899999999988877632                           57899


Q ss_pred             EecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC-------eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCE
Q 020798          142 WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG-------LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKF  214 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  214 (321)
                      ||+.+++.+..+.. . .+..++|+|++ +++++..+.       ...+|.+.+++. ..+...  ..+..  ++|+|++
T Consensus       157 ~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~--~~~~~--~spdg~~  228 (347)
T 2gop_A          157 FDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK--VSFYA--VDSDGER  228 (347)
T ss_dssp             EETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE--ESEEE--EEECSSC
T ss_pred             EECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC--cceee--ECCCCCE
Confidence            99998876344443 3 78899999999 777775542       334443334432 333222  23333  3999998


Q ss_pred             EEEEecC--------CeEEEEeCCCCcEEEEEeccCCceeEEEe-EEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC
Q 020798          215 ILVGTLD--------NTLRLWNYSTGKILKTYTGHTNSKYCISS-TFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG  285 (321)
Q Consensus       215 l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  285 (321)
                      |+..+.+        ..|.+||  +++.......+...   +.. ..+. ++ ++++++.++.+++| +.+++.. .+..
T Consensus       229 l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~---~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~  299 (347)
T 2gop_A          229 ILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRG---VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAK  299 (347)
T ss_dssp             EEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSE---EEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEEC
T ss_pred             EEEEEccccCCccccceEEEEC--CCceEeccccCCcc---cCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEec
Confidence            8877643        3688888  55543333332222   221 2334 67 88889999999999 8765543 3444


Q ss_pred             CCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          286 HTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       286 h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      +...|.+++|+|  .++++++.+ +....||..
T Consensus       300 ~~~~v~~~~~s~--~~~~~~~~~-~~~~~l~~~  329 (347)
T 2gop_A          300 GRHWIMGFDVDE--IVVYLKETA-TRLRELFTW  329 (347)
T ss_dssp             SSSEEEEEEESS--SEEEEEECS-SSCCEEEEE
T ss_pred             CCCeEEeeeeeC--cEEEEEcCC-CChHHheEe
Confidence            577899999999  566665543 222356643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.81  E-value=1.1e-17  Score=152.64  Aligned_cols=279  Identities=11%  Similarity=0.044  Sum_probs=175.4

Q ss_pred             ECCCCCEEEEecCCc---eEEEeeccccCCCCCCCCCcccc----cccccccEEEEEECCCCCEEEE-----EeCCCcEE
Q 020798           31 FSHDGRLLASSSADK---TLLTYSLSSISNSDSTPPSPLQK----FTGHEQGVSDLVFSSDSRFLVS-----ASDDKTIR   98 (321)
Q Consensus        31 ~s~~g~~l~~~~~d~---~v~~~~~~~~~~~~~~~~~~~~~----~~~h~~~i~~~~~~~~~~~l~~-----~~~d~~i~   98 (321)
                      .+|+|++++....++   .-.+|-....    ......+..    -.+|...+..++|||||++|+.     |+.+..|+
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~  150 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGE----SGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLH  150 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEEST----TSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCC----CCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEE
Confidence            348999888766544   3445543211    111111111    1245567899999999999983     34456899


Q ss_pred             EEecCCccee-eeeecCcccEEEEEECCCCCEEEEeeCCCc-------------EEEEecCCCE----EEEEEeCCCCCe
Q 020798           99 LWDVPTATCL-KTLIGHTNYVFCVNFNPQSNMIVSGAFDET-------------VRIWDVKTGK----CLKVLPAHSDPV  160 (321)
Q Consensus        99 iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~~wd~~~~~----~~~~~~~~~~~v  160 (321)
                      +||+.+++.+ ....... ....++|+|||+.|+.++.+..             |++|++.++.    ++.....+...+
T Consensus       151 v~dl~tg~~~~~~~~~~~-~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~  229 (695)
T 2bkl_A          151 VIDVDSGEWSKVDVIEGG-KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF  229 (695)
T ss_dssp             EEETTTCCBCSSCCBSCC-TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE
T ss_pred             EEECCCCCCcCCcccCcc-cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEE
Confidence            9999998754 2111111 1157899999999999888766             9999998765    333333455678


Q ss_pred             eEEEEccCCCEEEEEeCCC----eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe---cCCeEEEEeCCCCc
Q 020798          161 TAVDFNRDGTMIVTSSYDG----LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT---LDNTLRLWNYSTGK  233 (321)
Q Consensus       161 ~~~~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~---~d~~i~i~d~~~~~  233 (321)
                      ..+.|+|+|+.++..+.++    .+.++|..++.. ..+..... ......+ ++|.+++.+.   .++.|.+||+.+++
T Consensus       230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~-~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVG-AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSS-CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCC-ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            8999999999888776555    677777655442 23322222 3344445 5666444333   25789999998765


Q ss_pred             E---EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc-cceEEEEecCC-CCCeEEEEecCCCceEEEE--e
Q 020798          234 I---LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ-SRKVVQKLEGH-TDPVISVASHPTENIIASG--A  306 (321)
Q Consensus       234 ~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~--~  306 (321)
                      .   ...+..+... ......+.  ++.++++...|+..++|.+. .++....+..+ ...|..++++|++..++..  +
T Consensus       307 ~~~~~~l~~~~~~~-~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss  383 (695)
T 2bkl_A          307 RASWKEIVPEDSSA-SLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS  383 (695)
T ss_dssp             GGGCEEEECCCSSC-EEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred             ccCCeEEecCCCCC-eEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence            2   3333222121 11112222  67888999999988888765 35556666655 5678889999998766643  3


Q ss_pred             ecCCccEEEccccc
Q 020798          307 LDNDRTVKIWTQEK  320 (321)
Q Consensus       307 ~d~~~~i~iw~~~~  320 (321)
                      ....++|++||++.
T Consensus       384 ~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          384 FTTPRQIYKTSVST  397 (695)
T ss_dssp             TTEEEEEEEEETTT
T ss_pred             CCCCCEEEEEECCC
Confidence            33457899998753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.80  E-value=7.5e-16  Score=135.87  Aligned_cols=275  Identities=12%  Similarity=0.108  Sum_probs=192.0

Q ss_pred             CCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecC--Ccceeee
Q 020798           33 HDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP--TATCLKT  110 (321)
Q Consensus        33 ~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~  110 (321)
                      |.+.++++...++.|.++|....        ..+..+.. ...+..+.|+|||+++++++.|+.|.+||+.  +.+.+..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~--------~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTY--------EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTC--------CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCC--------eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE
Confidence            44566777888999999987542        22333332 2356789999999999999999999999995  7777666


Q ss_pred             eecCcccEEEEEEC----CCCCEEEEee-CCCcEEEEecCCCEEEEEEeCC-----------CCCeeEEEEccCCCEEE-
Q 020798          111 LIGHTNYVFCVNFN----PQSNMIVSGA-FDETVRIWDVKTGKCLKVLPAH-----------SDPVTAVDFNRDGTMIV-  173 (321)
Q Consensus       111 ~~~~~~~v~~~~~~----~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~-  173 (321)
                      +... .....++++    |+|+++++++ .++.+.++|..+.+.+..+...           ...+..+..++++..++ 
T Consensus       236 i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv  314 (567)
T 1qks_A          236 IKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV  314 (567)
T ss_dssp             EECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence            6543 345789999    6999877665 5689999999998887776532           12567788888766544 


Q ss_pred             EEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcEEEEEec-cCCce--eEEE
Q 020798          174 TSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKILKTYTG-HTNSK--YCIS  249 (321)
Q Consensus       174 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~~~--~~~~  249 (321)
                      .....|.|.++|....................+.|+|+|++++++. .++.|.++|+.+++++..+.. ...+.  ....
T Consensus       315 ~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~  394 (567)
T 1qks_A          315 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN  394 (567)
T ss_dssp             EETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred             EecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee
Confidence            4556799999998765432222112334466788999999987766 578999999999998877654 22111  1122


Q ss_pred             eEEEecC-CeEEEEeC-CCCeEEEEEccc-------ceEEEEecCCCCCeEEEEecCCCceEEEEee-cC----CccEEE
Q 020798          250 STFSVTN-GKYIVSGS-EDSCVYLWELQS-------RKVVQKLEGHTDPVISVASHPTENIIASGAL-DN----DRTVKI  315 (321)
Q Consensus       250 ~~~~~~~-~~~l~~~~-~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~-d~----~~~i~i  315 (321)
                        +..++ +..++++. .++.|.++|..+       .+.++.+......-..+..+|++++|-.... ..    ...|.+
T Consensus       395 --~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v  472 (567)
T 1qks_A          395 --FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV  472 (567)
T ss_dssp             --EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE
T ss_pred             --eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEE
Confidence              33455 55555554 568999999987       5677877765433356788999988776541 11    247889


Q ss_pred             cccc
Q 020798          316 WTQE  319 (321)
Q Consensus       316 w~~~  319 (321)
                      +|.+
T Consensus       473 ~d~~  476 (567)
T 1qks_A          473 FDIK  476 (567)
T ss_dssp             EEGG
T ss_pred             EECC
Confidence            8875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=3.4e-16  Score=127.83  Aligned_cols=228  Identities=11%  Similarity=0.079  Sum_probs=161.6

Q ss_pred             cccccccccEEEEEECCCCC-EEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC
Q 020798           67 QKFTGHEQGVSDLVFSSDSR-FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK  145 (321)
Q Consensus        67 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  145 (321)
                      ..+..+.....+++|+|+++ +++++..++.|..|+..++  ...+..+...+.+++++|+++++++...++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            34445556678999999998 7778888999999999877  45566677778999999999988877777899999997


Q ss_pred             CCEEEEEEeCC----CCCeeEEEEccCCCEEEEEe-----------------CCCeEEEEeCCCCceeeeeccCCCCCeE
Q 020798          146 TGKCLKVLPAH----SDPVTAVDFNRDGTMIVTSS-----------------YDGLCRIWDASTGHCMKTLIDDENPPVS  204 (321)
Q Consensus       146 ~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~  204 (321)
                      +++........    ...+..++++|+|+++++..                 ..+.|..++.. ++. ..+. .......
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-~~~~~~~  175 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI-RDRVKPN  175 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE-CCCSSEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee-cCCCCCc
Confidence            77654332211    23456899999999888732                 13456666655 332 2222 2334567


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCC-CCcE---EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEE
Q 020798          205 FVKFSPNGKFILVGTLDNTLRLWNYS-TGKI---LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV  280 (321)
Q Consensus       205 ~~~~~~~g~~l~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (321)
                      .++|+|+|+.+++...++.|.+|++. +++.   ...+.........   ....++|.++++.  ++.|.+||.. ++.+
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~---i~~d~~G~l~v~~--~~~v~~~~~~-g~~~  249 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDG---LRVDAGGLIWASA--GDGVHVLTPD-GDEL  249 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCS---EEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCe---EEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence            89999999998666678899999986 5554   2333111111122   2334678866665  7889999986 7777


Q ss_pred             EEecCCCCCeEEEEe-cCCCceEEEEe
Q 020798          281 QKLEGHTDPVISVAS-HPTENIIASGA  306 (321)
Q Consensus       281 ~~~~~h~~~v~~~~~-~p~~~~l~s~~  306 (321)
                      ..+..+.. +.+++| .|+++.|..++
T Consensus       250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t  275 (296)
T 3e5z_A          250 GRVLTPQT-TSNLCFGGPEGRTLYMTV  275 (296)
T ss_dssp             EEEECSSC-CCEEEEESTTSCEEEEEE
T ss_pred             EEEECCCC-ceeEEEECCCCCEEEEEc
Confidence            77777777 899999 68988877776

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=3.9e-16  Score=127.47  Aligned_cols=242  Identities=11%  Similarity=0.078  Sum_probs=167.3

Q ss_pred             eeccCCcccEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           17 QTLNGHLRAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      ..+..+.....+++|+|+|+ +++++..++.|..|+....          ...+..+...+.+++++++|+++++...++
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~   90 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----------LSPEMHPSHHQNGHCLNKQGHLIACSHGLR   90 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------EEEEESSCSSEEEEEECTTCCEEEEETTTT
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------eEEEECCCCCcceeeECCCCcEEEEecCCC
Confidence            44455667788999999998 7888888999999976431          234445667789999999999887777778


Q ss_pred             cEEEEecCCcceeeeeecC----cccEEEEEECCCCCEEEE----ee-------------CCCcEEEEecCCCEEEEEEe
Q 020798           96 TIRLWDVPTATCLKTLIGH----TNYVFCVNFNPQSNMIVS----GA-------------FDETVRIWDVKTGKCLKVLP  154 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~~wd~~~~~~~~~~~  154 (321)
                      .|.+||..+++........    ...+..++++|+|+++++    +.             ..+.|..++.. ++ ...+.
T Consensus        91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~  168 (296)
T 3e5z_A           91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI  168 (296)
T ss_dssp             EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE
T ss_pred             eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee
Confidence            9999999777643322111    123567899999998887    32             13456666655 44 33344


Q ss_pred             CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCC-CCce---eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 020798          155 AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS-TGHC---MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       155 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~---~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~  230 (321)
                      .+......++|+|+++.+++.+.++.|.+||+. ++..   ...+ ......+..++++++|+++++.  ++.|.+||..
T Consensus       169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            555667899999999988777778999999986 4443   2222 2223345678999999866655  8899999976


Q ss_pred             CCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce
Q 020798          231 TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK  278 (321)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (321)
                       ++.+..+..+.. ...+  .+..++++.|++++.++ +.-++..+.+
T Consensus       246 -g~~~~~~~~~~~-~~~~--~f~~~d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          246 -GDELGRVLTPQT-TSNL--CFGGPEGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             -SCEEEEEECSSC-CCEE--EEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred             -CCEEEEEECCCC-ceeE--EEECCCCCEEEEEcCCe-EEEEEccccc
Confidence             777777766554 3332  34356787787777654 4445665544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.78  E-value=1.7e-16  Score=145.05  Aligned_cols=245  Identities=13%  Similarity=0.108  Sum_probs=163.9

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCc-----eEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADK-----TLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~-----~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      +|...+..++|||||++||.++.++     .|++|++.+..        .+. .......+..++|+|||+.|+.++.++
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~--------~~~-~~~~~~~~~~~~wspDg~~l~~~~~~~  192 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK--------ELP-DVLERVKFSCMAWTHDGKGMFYNAYPQ  192 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE--------EEE-EEEEEECSCCEEECTTSSEEEEEECCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--------CCc-ccccCcccceEEEEeCCCEEEEEEECC
Confidence            4555788999999999998765433     89999876422        111 111122356799999999999888776


Q ss_pred             c----------------EEEEecCCccee----eeeecCcccEEEEEECCCCCEEEEeeC-----CCcEEEEecCC----
Q 020798           96 T----------------IRLWDVPTATCL----KTLIGHTNYVFCVNFNPQSNMIVSGAF-----DETVRIWDVKT----  146 (321)
Q Consensus        96 ~----------------i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~----  146 (321)
                      .                |++|++.+++..    .....+...+..+.|+|||++|+..+.     +..|++||+.+    
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~  272 (710)
T 2xdw_A          193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (710)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             ccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence            5                999999877522    122224556788999999999877654     56899999976    


Q ss_pred             --CE-EEEEEeCCCCCeeEEEEccCCCEEEEEeCC----CeEEEEeCCCCce--eeeeccCCC-CCeEEEEEccCCCEEE
Q 020798          147 --GK-CLKVLPAHSDPVTAVDFNRDGTMIVTSSYD----GLCRIWDASTGHC--MKTLIDDEN-PPVSFVKFSPNGKFIL  216 (321)
Q Consensus       147 --~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~--~~~~~~~~~-~~~~~~~~~~~g~~l~  216 (321)
                        +. ....+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++..  ...+..... ..+..+.+++++.+++
T Consensus       273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~  351 (710)
T 2xdw_A          273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL  351 (710)
T ss_dssp             SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred             cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence              42 34455555555544 478888877766543    3699999987631  233333322 2567788887777788


Q ss_pred             EEecCC--eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEE-Ee---CCCCeEEEEEcccce
Q 020798          217 VGTLDN--TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIV-SG---SEDSCVYLWELQSRK  278 (321)
Q Consensus       217 ~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~---~~dg~i~vwd~~~~~  278 (321)
                      +...++  .|.+||+.+++.+..+..+....   ......+++..++ +.   ...+.|+.||+.+++
T Consensus       352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v---~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSV---VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECCCSSEE---EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEECCCCCEEEecCCCCceE---EEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            888887  46677877787777776653322   2222234665444 32   356789999998765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.78  E-value=2.4e-16  Score=126.84  Aligned_cols=239  Identities=9%  Similarity=-0.041  Sum_probs=160.4

Q ss_pred             cEEEEEECCCCCEEE-EEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE
Q 020798           75 GVSDLVFSSDSRFLV-SASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL  153 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  153 (321)
                      ...++++++++++++ +...++.|.+|+..+.........+...+..++++++++.+++.. ++.|.+||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            678899999999776 547788999999766543222222334577899999988666655 889999998765432221


Q ss_pred             eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc
Q 020798          154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK  233 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~  233 (321)
                      ......+..+++.++++++++...++.|.+|+..+....... ......+..++++++|+++++...++.|.+||.....
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            122356789999999987777777889999986554322211 1112345678999999977766677899999987765


Q ss_pred             EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccE
Q 020798          234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTV  313 (321)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i  313 (321)
                      ............   ......++|.++++...++.|.+|+............+...+.+++++|+|+++++.+  .++.|
T Consensus       183 ~~~~~~~~~~~p---~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~--~~~~v  257 (270)
T 1rwi_B          183 QVVLPFTDITAP---WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR--GNDRV  257 (270)
T ss_dssp             EEECCCSSCCSE---EEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG--GGTEE
T ss_pred             eEeecccCCCCc---eEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC--CCCEE
Confidence            443222221222   2233446777777777889999999876544332223345689999999999877765  35789


Q ss_pred             EEccccc
Q 020798          314 KIWTQEK  320 (321)
Q Consensus       314 ~iw~~~~  320 (321)
                      ++++...
T Consensus       258 ~~~~~~~  264 (270)
T 1rwi_B          258 VKLTSLE  264 (270)
T ss_dssp             EEECCCG
T ss_pred             EEEcCCC
Confidence            9998754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.78  E-value=5.6e-16  Score=124.91  Aligned_cols=214  Identities=12%  Similarity=0.137  Sum_probs=166.3

Q ss_pred             CCCEEEEEeCCCcEEEEecCCcceeeeeecCc-ccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCC-CCee
Q 020798           84 DSRFLVSASDDKTIRLWDVPTATCLKTLIGHT-NYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHS-DPVT  161 (321)
Q Consensus        84 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~  161 (321)
                      .++.|++++.++.|.+||.++++.+..+..+. ..+..+.+.|+|+.++  +.++.|+.||. +++.+..+..+. ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            46789999999999999999999888887665 4678899999999888  34678999998 788888777643 4678


Q ss_pred             EEEEccCCCEEEEEeC-CCeEEEEeCCCCceeeeeccCC-----CCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEE
Q 020798          162 AVDFNRDGTMIVTSSY-DGLCRIWDASTGHCMKTLIDDE-----NPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKIL  235 (321)
Q Consensus       162 ~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~  235 (321)
                      ++.+.++|+.+++.+. ++.+..+|. +++.+..+....     ......+...++|+++++...++.|..||.. ++.+
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            8999999999998887 788888886 555554432111     1123446788999999998899999999987 9999


Q ss_pred             EEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC------CCeEEEEecCCCceEEEEe
Q 020798          236 KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT------DPVISVASHPTENIIASGA  306 (321)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~------~~v~~~~~~p~~~~l~s~~  306 (321)
                      ..+.....+ ...   ...+++..++++..++.|..+|..+++.+.++..+.      ..+.+++..++|+++++..
T Consensus       159 w~~~~~~~~-~~~---~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          159 NSVKLSGTP-FSS---AFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEECSSCC-CEE---EECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCc-cce---eEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            888764322 222   224688999988888899999999999988876432      2378888999999998874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=4.1e-18  Score=144.78  Aligned_cols=237  Identities=11%  Similarity=0.064  Sum_probs=153.3

Q ss_pred             EEEEEECCCCCEEEEEeCC---CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE
Q 020798           76 VSDLVFSSDSRFLVSASDD---KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV  152 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  152 (321)
                      +..++|+|+|++|+.....   ..|.+||+.+++......++......+.|+|+++.|+.++.++.|++||+.+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            6678899999998776543   3688889888765433232322223367999999999999889999999988876655


Q ss_pred             EeCCCCCeeE-------------------EEEccCCCEEEEE-----eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEE
Q 020798          153 LPAHSDPVTA-------------------VDFNRDGTMIVTS-----SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKF  208 (321)
Q Consensus       153 ~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  208 (321)
                      ...+......                   +.|+|+++.++..     ..+..|.+||+.+++.....  .....+..+.|
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~  195 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIY  195 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEE
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceE
Confidence            5444332222                   2456776655443     35668999999887654333  23445778999


Q ss_pred             cc-CCCEEEEEecC------CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC-----CeEEEEEccc
Q 020798          209 SP-NGKFILVGTLD------NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED-----SCVYLWELQS  276 (321)
Q Consensus       209 ~~-~g~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~  276 (321)
                      +| +++.|+..+.+      ..|.+||+..++... +..+.. ...+......++|++|+..+.+     +.|++||+.+
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAE-GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET  273 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCT-TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCC-CccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence            99 78877665543      368889987654332 222211 1223333445788877665433     4599999987


Q ss_pred             ceEEEEecCCCCCeEEEEecC-CCceEEEEee--------------cCCccEEEcccc
Q 020798          277 RKVVQKLEGHTDPVISVASHP-TENIIASGAL--------------DNDRTVKIWTQE  319 (321)
Q Consensus       277 ~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~--------------d~~~~i~iw~~~  319 (321)
                      ++...... .. ... +.|+| ++++++.++.              +++..|++||.+
T Consensus       274 g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          274 LENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             CCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             CCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            76433221 11 123 89999 9998887642              234679999875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.77  E-value=1.2e-16  Score=145.73  Aligned_cols=246  Identities=13%  Similarity=0.072  Sum_probs=159.0

Q ss_pred             CCcccEEEEEECCCCCEEE-----EecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           21 GHLRAISSVKFSHDGRLLA-----SSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~-----~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      +|...+..++|||||++||     .|+.+..|++|++.+.....      ...+...  ....++|+|||+.|+.++.+.
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------~~~~~~~--~~~~~~wspDg~~l~~~~~d~  189 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------VDVIEGG--KYATPKWTPDSKGFYYEWLPT  189 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------SCCBSCC--TTCCCEECTTSSEEEEEECCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------CcccCcc--cccceEEecCCCEEEEEEecC
Confidence            5666799999999999999     56666899999987543210      0011111  125789999999999988877


Q ss_pred             c-------------EEEEecCCcc----eeeeeecCcccEEEEEECCCCCEEEEeeCCC----cEEEEecCCCEEEEEEe
Q 020798           96 T-------------IRLWDVPTAT----CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE----TVRIWDVKTGKCLKVLP  154 (321)
Q Consensus        96 ~-------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~  154 (321)
                      .             |++|++.++.    .+.....+...+..+.++|||++|+.++.++    .|++|+..+++.. .+.
T Consensus       190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~  268 (695)
T 2bkl_A          190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV  268 (695)
T ss_dssp             CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE
T ss_pred             CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee
Confidence            6             9999998775    2223334556788999999999988777655    6777776555433 344


Q ss_pred             CCCCCeeEEEEccCCCEEEEEe---CCCeEEEEeCCCCce--eeeeccCC-CCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 020798          155 AHSDPVTAVDFNRDGTMIVTSS---YDGLCRIWDASTGHC--MKTLIDDE-NPPVSFVKFSPNGKFILVGTLDNTLRLWN  228 (321)
Q Consensus       155 ~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~--~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~d~~i~i~d  228 (321)
                      .+...+....+ +++.+++.+.   .++.|.+||+.++..  ...+.... ...+..+.++ ++.++++...|+..++|.
T Consensus       269 ~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          269 KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            44555566666 5666444443   257899999977642  23333332 3446777777 677778888898877775


Q ss_pred             CC-CCcEEEEEeccCCceeEEEeEEEecCCeEEE----EeCCCCeEEEEEcccceE
Q 020798          229 YS-TGKILKTYTGHTNSKYCISSTFSVTNGKYIV----SGSEDSCVYLWELQSRKV  279 (321)
Q Consensus       229 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~dg~i~vwd~~~~~~  279 (321)
                      +. +++.+..+..+...  .+......+++..++    +....+.|++||+.+++.
T Consensus       347 ~~~~g~~~~~l~~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          347 ATLKGKPVRTVQLPGVG--AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EETTCCEEEECCCSSSS--EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EeCCCCeeEEecCCCCe--EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            54 35555555433111  122122234665555    334567899999987653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.76  E-value=8.1e-14  Score=113.59  Aligned_cols=280  Identities=9%  Similarity=0.023  Sum_probs=188.0

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEE
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRL   99 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~i   99 (321)
                      ......+.++++.++|++.++...++.|..|+.. ...      . ...+..+...+..+++.++++++++...++.|..
T Consensus        16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~------~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~   87 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI------K-EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGK   87 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE------E-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce------E-EEECCCCCCcceeEEECCCCCEEEEecCCCeEEE
Confidence            3445688899999999988887778889888754 110      0 0011223356889999999987777766788999


Q ss_pred             EecCCcceee-eeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE-EEeCCCCCeeEEEEccCCCEEEEEeC
Q 020798          100 WDVPTATCLK-TLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK-VLPAHSDPVTAVDFNRDGTMIVTSSY  177 (321)
Q Consensus       100 wd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~  177 (321)
                      ||.. ++... ........+..+++.++++.+++...++.|..+|.. ++... .+......+..+++.++++++++...
T Consensus        88 ~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  165 (300)
T 2qc5_A           88 LSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ  165 (300)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             ECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence            9987 54322 222234568899999999888877768899999987 54432 23334456889999999997766666


Q ss_pred             CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE-eccCCceeEEEeEEEecC
Q 020798          178 DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY-TGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       178 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  256 (321)
                      ++.|..+|. +++............+..++++++|+++++....+.|.+||. +++..... ......   .......++
T Consensus       166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~---~~~i~~d~~  240 (300)
T 2qc5_A          166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNAR---PHAITAGKN  240 (300)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC---EEEEEECST
T ss_pred             CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCC---ceEEEECCC
Confidence            788999998 444333222223345778999999987776666778999998 55544332 111122   222334467


Q ss_pred             CeEEEEeCCCCeEEEEEcccceEE-EEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          257 GKYIVSGSEDSCVYLWELQSRKVV-QKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      |.++++...++.|..||.. ++.. ..+......+.++++.++|+++++..   + .|..++.+
T Consensus       241 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~---~-~i~~~~p~  299 (300)
T 2qc5_A          241 SEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK---C-KIGKLNLN  299 (300)
T ss_dssp             TCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS---S-EEEEEEEC
T ss_pred             CCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc---C-ceEEeCCC
Confidence            8877777677899999984 4332 22333445689999999998777643   2 56666554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.76  E-value=3e-14  Score=125.73  Aligned_cols=284  Identities=13%  Similarity=0.113  Sum_probs=190.5

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEEC----CCCCEEEEEeC-CCcEEE
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFS----SDSRFLVSASD-DKTIRL   99 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~----~~~~~l~~~~~-d~~i~i   99 (321)
                      .+..++|+|||+++++++.++.|.+||+...      ....+..+.. ......++|+    |+|++++++.. ++++.+
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~------t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V  270 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMK------EPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVI  270 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSS------SCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEE
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCC------CCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEE
Confidence            5668999999999999999999999997410      1122333332 2346789999    69998877654 589999


Q ss_pred             EecCCcceeeeeec----------Ccc-cEEEEEECCCCCE-EEEeeCCCcEEEEecCCCEEE--EEEeCCCCCeeEEEE
Q 020798          100 WDVPTATCLKTLIG----------HTN-YVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGKCL--KVLPAHSDPVTAVDF  165 (321)
Q Consensus       100 wd~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~  165 (321)
                      +|..+.+.+..+..          |.. .+..+..++++.. ++....+|.|.++|..+.+..  ..+. .......+.|
T Consensus       271 iD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~  349 (567)
T 1qks_A          271 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGL  349 (567)
T ss_dssp             EETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEE
T ss_pred             EECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceE
Confidence            99999887766542          112 5677888887655 455567799999998765322  2232 2345678899


Q ss_pred             ccCCCEEEEEe-CCCeEEEEeCCCCceeeeecc-CCCC-CeEEE-EEccCCCEE-EEEe-cCCeEEEEeCCC-------C
Q 020798          166 NRDGTMIVTSS-YDGLCRIWDASTGHCMKTLID-DENP-PVSFV-KFSPNGKFI-LVGT-LDNTLRLWNYST-------G  232 (321)
Q Consensus       166 ~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~-~~~~-~~~~~-~~~~~g~~l-~~~~-~d~~i~i~d~~~-------~  232 (321)
                      +|++++++++. .++.|.++|+.+++....+.. ...+ +-..+ .++|++..+ +++. .++.|.++|..+       .
T Consensus       350 ~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~  429 (567)
T 1qks_A          350 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW  429 (567)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccC
Confidence            99999877655 678999999999887655543 2111 10112 267875444 4443 468999999987       6


Q ss_pred             cEEEEEeccCCceeEEEeEEEecCCeEEEEeCC-------CCeEEEEEcccc-----e-EEEEec--------CCCCCeE
Q 020798          233 KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSE-------DSCVYLWELQSR-----K-VVQKLE--------GHTDPVI  291 (321)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~-----~-~~~~~~--------~h~~~v~  291 (321)
                      +.++.+.........+   ...++++++.+...       .+.|.|||+.+.     . ....+.        .-...+.
T Consensus       430 kvv~~i~~~g~g~~~i---~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  506 (567)
T 1qks_A          430 KILDSFPALGGGSLFI---KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV  506 (567)
T ss_dssp             SEEEEEECSCSCCCCE---ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred             EEEEEEecCCCCCEEE---EeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE
Confidence            7788876543222222   23578888877653       358999999876     2 112221        1235789


Q ss_pred             EEEecCCCceEEEEee---cCCccEEEcccc
Q 020798          292 SVASHPTENIIASGAL---DNDRTVKIWTQE  319 (321)
Q Consensus       292 ~~~~~p~~~~l~s~~~---d~~~~i~iw~~~  319 (321)
                      .+.|+|+|+++-.+..   +.++.|.++|.+
T Consensus       507 ~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~  537 (567)
T 1qks_A          507 QGEFNKDGTEVWFSVWNGKDQESALVVVDDK  537 (567)
T ss_dssp             EEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             eeeECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence            9999999987666533   235788888865

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.76  E-value=1e-15  Score=123.18  Aligned_cols=241  Identities=9%  Similarity=-0.013  Sum_probs=161.8

Q ss_pred             cEEEEEECCCCCEEE-EecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 020798           25 AISSVKFSHDGRLLA-SSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP  103 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  103 (321)
                      ...+++++|+|++++ +.+.++.|..|+......        ......+...+.+++++++++++++.. ++.|.+||..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT--------TVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAG   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-------------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc--------ceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCC
Confidence            778999999999777 557788898887543211        000012234577899999998666555 8899999987


Q ss_pred             CcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEE
Q 020798          104 TATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRI  183 (321)
Q Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  183 (321)
                      ..............+..++++++++.+++...++.|.+|+..+.............+..++++++++++++...++.|.+
T Consensus        96 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~  175 (270)
T 1rwi_B           96 SNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK  175 (270)
T ss_dssp             CSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred             CceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence            65432221223356789999999987777777889999986554333222222345688999999987777777889999


Q ss_pred             EeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEe
Q 020798          184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG  263 (321)
Q Consensus       184 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  263 (321)
                      ||........... .....+..++++++|.++++...++.|.+||............+...   .......++|+++++.
T Consensus       176 ~~~~~~~~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~---p~~i~~~~~g~l~v~~  251 (270)
T 1rwi_B          176 LEAESNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNT---PLAVAVDSDRTVYVAD  251 (270)
T ss_dssp             ECTTTCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSC---EEEEEECTTCCEEEEE
T ss_pred             EecCCCceEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCC---ceeEEECCCCCEEEEE
Confidence            9987655432221 22245788999999977776667889999998665433211111112   2223334678888888


Q ss_pred             CCCCeEEEEEcccce
Q 020798          264 SEDSCVYLWELQSRK  278 (321)
Q Consensus       264 ~~dg~i~vwd~~~~~  278 (321)
                      ..++.|+++++...+
T Consensus       252 ~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          252 RGNDRVVKLTSLEHH  266 (270)
T ss_dssp             GGGTEEEEECCCGGG
T ss_pred             CCCCEEEEEcCCCcc
Confidence            899999999987654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.76  E-value=6.4e-16  Score=141.90  Aligned_cols=279  Identities=12%  Similarity=0.065  Sum_probs=172.1

Q ss_pred             CCCCCEEEEecCCce---EEEeeccccCCCCCCCCCccc----ccccccccEEEEEECCCCCEEEEEeCC-----CcEEE
Q 020798           32 SHDGRLLASSSADKT---LLTYSLSSISNSDSTPPSPLQ----KFTGHEQGVSDLVFSSDSRFLVSASDD-----KTIRL   99 (321)
Q Consensus        32 s~~g~~l~~~~~d~~---v~~~~~~~~~~~~~~~~~~~~----~~~~h~~~i~~~~~~~~~~~l~~~~~d-----~~i~i   99 (321)
                      +|+|++++....++.   -.+|....... .......+.    .-.+|...+..++|||||++|+.++.+     ..|++
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAP-VGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSC-TTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCcc-CCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            489998887655443   45564431100 001111110    112344468899999999999876543     35999


Q ss_pred             EecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCc--------------EEEEecCCCEE--EEEEe--CCCCCee
Q 020798          100 WDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDET--------------VRIWDVKTGKC--LKVLP--AHSDPVT  161 (321)
Q Consensus       100 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------------i~~wd~~~~~~--~~~~~--~~~~~v~  161 (321)
                      ||+.+++.+... .+...+..++|+|| +.|+.+..++.              |++|++.++..  ...+.  .+...+.
T Consensus       194 ~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~  271 (741)
T 1yr2_A          194 VGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH  271 (741)
T ss_dssp             EETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred             EECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence            999998765431 12222347889999 88888776554              88999876541  22222  2333578


Q ss_pred             EEEEccCCCEEEEEeCC-----CeEEEEeCCCC--ceeeeeccCCCCCeEEEEEccCCCEEEEEec----CCeEEEEeCC
Q 020798          162 AVDFNRDGTMIVTSSYD-----GLCRIWDASTG--HCMKTLIDDENPPVSFVKFSPNGKFILVGTL----DNTLRLWNYS  230 (321)
Q Consensus       162 ~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~----d~~i~i~d~~  230 (321)
                      .+.|+|+|+.++..+.+     ..+++||+.++  ++...+...... .... ++|+|+.|+..+.    ++.|.+||+.
T Consensus       272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~  349 (741)
T 1yr2_A          272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA-QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS  349 (741)
T ss_dssp             EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS-CEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred             EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc-eEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            99999999988877644     38999998776  313333333322 3333 3488888887765    3469999988


Q ss_pred             CC--cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcc-cceEEEEecCC-CCCeEEEEecCCCceEEEE-
Q 020798          231 TG--KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQ-SRKVVQKLEGH-TDPVISVASHPTENIIASG-  305 (321)
Q Consensus       231 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~-  305 (321)
                      ++  +....+..+.. .  +..... .++.++++...|+..+||.+. .++....+..+ ...|..++++|++..|+.. 
T Consensus       350 ~~~~~~~~l~~~~~~-~--l~~~~~-~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~  425 (741)
T 1yr2_A          350 GSTPRFDTVVPESKD-N--LESVGI-AGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSF  425 (741)
T ss_dssp             SSSCEEEEEECCCSS-E--EEEEEE-EBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred             CCccccEEEecCCCC-e--EEEEEE-ECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEE
Confidence            75  33333333322 1  221111 257788888889987777664 45556666543 5678899999998766633 


Q ss_pred             -eecCCccEEEcccc
Q 020798          306 -ALDNDRTVKIWTQE  319 (321)
Q Consensus       306 -~~d~~~~i~iw~~~  319 (321)
                       +....++|++||++
T Consensus       426 ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          426 SSFTQPATVLALDPA  440 (741)
T ss_dssp             EETTEEEEEEEEETT
T ss_pred             cCCCCCCEEEEEECC
Confidence             33445789999875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=1.5e-14  Score=120.07  Aligned_cols=248  Identities=8%  Similarity=0.069  Sum_probs=161.8

Q ss_pred             cccccCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC
Q 020798            5 QSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD   84 (321)
Q Consensus         5 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~   84 (321)
                      ..++.+ .......+..+...+.+++|+|+|++++++..++.|.+|+....        ........+...+.+++++++
T Consensus        27 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~~i~~~~d   97 (333)
T 2dg1_A           27 SELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK--------EIKRPFVSHKANPAAIKIHKD   97 (333)
T ss_dssp             GGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC--------CEEEEEECSSSSEEEEEECTT
T ss_pred             ccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC--------cEEEEeeCCCCCcceEEECCC
Confidence            334444 23344456667777899999999998888888999999976431        111112234567999999999


Q ss_pred             CCEEEEEeCC----CcEEEEecCCcceeeeee--cCcccEEEEEECCCCCEEEEeeC------CCcEEEEecCCCEEEEE
Q 020798           85 SRFLVSASDD----KTIRLWDVPTATCLKTLI--GHTNYVFCVNFNPQSNMIVSGAF------DETVRIWDVKTGKCLKV  152 (321)
Q Consensus        85 ~~~l~~~~~d----~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~  152 (321)
                      |+++++...+    +.|.+||..++.....+.  .+...+..++++|+++.+++...      .+.|..+|..+++....
T Consensus        98 g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~  177 (333)
T 2dg1_A           98 GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI  177 (333)
T ss_dssp             SCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred             CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence            9988777666    689999988776432222  23456889999999988776653      35677777665543332


Q ss_pred             EeCCCCCeeEEEEccCCCEEE-EEeCCCeEEEEeCCC-Cceeee----ec-c-CCCCCeEEEEEccCCCEEEEEecCCeE
Q 020798          153 LPAHSDPVTAVDFNRDGTMIV-TSSYDGLCRIWDAST-GHCMKT----LI-D-DENPPVSFVKFSPNGKFILVGTLDNTL  224 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~-~~~~~~----~~-~-~~~~~~~~~~~~~~g~~l~~~~~d~~i  224 (321)
                      . .....+..++|+|+++.++ +...++.|.+||+.+ +.....    .. . .....+..++++++|+++++...++.|
T Consensus       178 ~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v  256 (333)
T 2dg1_A          178 I-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV  256 (333)
T ss_dssp             E-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             e-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence            2 2234578899999998654 445678999999863 322211    11 1 111346779999999988777778899


Q ss_pred             EEEeCCCCcEEEEEeccCC------ceeEEEeEEEecCCeEEEEeCCC
Q 020798          225 RLWNYSTGKILKTYTGHTN------SKYCISSTFSVTNGKYIVSGSED  266 (321)
Q Consensus       225 ~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d  266 (321)
                      .+||. +++.+..+.....      ....+  .+ .+++..|+.++.+
T Consensus       257 ~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~--~~-~~dg~~L~v~~~~  300 (333)
T 2dg1_A          257 LVFNK-RGYPIGQILIPGRDEGHMLRSTHP--QF-IPGTNQLIICSND  300 (333)
T ss_dssp             EEECT-TSCEEEEEECTTGGGTCSCBCCEE--EE-CTTSCEEEEEEEC
T ss_pred             EEECC-CCCEEEEEEcCCCccccccCcceE--EE-CCCCCEEEEEeCc
Confidence            99998 5666666654321      22222  33 3676556554444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.75  E-value=3e-15  Score=120.61  Aligned_cols=240  Identities=14%  Similarity=0.150  Sum_probs=172.9

Q ss_pred             CCCCEEEEecCCceEEEeeccccCCCCCCCCCccccccccc-ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeee
Q 020798           33 HDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHE-QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTL  111 (321)
Q Consensus        33 ~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  111 (321)
                      ..+++|++++.++.|.+||..+        .+.+..+..+. ..+.++.++|+|++++  +.++.|..||. +++.+..+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~t--------G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~   71 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDT--------KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI   71 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTT--------TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCC--------CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE
Confidence            3568899999999999998633        23344555444 4678999999999888  45778999998 78877777


Q ss_pred             ecC-cccEEEEEECCCCCEEEEeeC-CCcEEEEecCCCEEEEEEeCC------CCCeeEEEEccCCCEEEEEeCCCeEEE
Q 020798          112 IGH-TNYVFCVNFNPQSNMIVSGAF-DETVRIWDVKTGKCLKVLPAH------SDPVTAVDFNRDGTMIVTSSYDGLCRI  183 (321)
Q Consensus       112 ~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~~  183 (321)
                      ..+ ...+.++.+.|+|+.+++.+. ++.+..+|. +++.+..+...      ......+++.++++++++...++.|..
T Consensus        72 ~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~  150 (276)
T 3no2_A           72 AAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE  150 (276)
T ss_dssp             ECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred             cCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEE
Confidence            654 346888999999999998877 778888885 56665555421      123445678899999999999999999


Q ss_pred             EeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCC---ceeEEEeEEEecCCeEE
Q 020798          184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN---SKYCISSTFSVTNGKYI  260 (321)
Q Consensus       184 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l  260 (321)
                      ||.. ++.+.++...  .....+...++|+.++++..++.|..+|..+++.+..+.....   ....+......++|..+
T Consensus       151 ~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~  227 (276)
T 3no2_A          151 IAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY  227 (276)
T ss_dssp             ECTT-SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred             ECCC-CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence            9998 8777666433  2344567789999998888888999999999999988864321   11223334445678877


Q ss_pred             EEeCC--C------CeEEEEEc-ccceEEEEecCCC
Q 020798          261 VSGSE--D------SCVYLWEL-QSRKVVQKLEGHT  287 (321)
Q Consensus       261 ~~~~~--d------g~i~vwd~-~~~~~~~~~~~h~  287 (321)
                      ++...  .      +..+++++ .+++++..+..+.
T Consensus       228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~  263 (276)
T 3no2_A          228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKV  263 (276)
T ss_dssp             EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTT
T ss_pred             EEeccCccccccccCCceEEEECCCCCEEEEecCcc
Confidence            76631  1      23466776 5677777776543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=8.7e-16  Score=128.17  Aligned_cols=219  Identities=12%  Similarity=0.163  Sum_probs=147.5

Q ss_pred             ccEEEEEECCCCCEEEEEe---------CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCC---C--cE
Q 020798           74 QGVSDLVFSSDSRFLVSAS---------DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD---E--TV  139 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i  139 (321)
                      ..+....+  +|++++...         .++.|.+||+.+++. ..+    ..+..+.|+|||+.|+.++.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            34667777  888887542         256799999988764 233    457789999999998877643   2  48


Q ss_pred             EEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCC---------------------------CeEEEEeCCCCcee
Q 020798          140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD---------------------------GLCRIWDASTGHCM  192 (321)
Q Consensus       140 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~i~~~d~~~~~~~  192 (321)
                      ++||+.+++.......+ . +..++|+|+++.|+.++.+                           ..|.+||+.+++..
T Consensus        88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            88898888766554433 3 8999999999988877632                           57889999887753


Q ss_pred             eeeccCCCCCeEEEEEccCCCEEEEEecCC-------eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCC
Q 020798          193 KTLIDDENPPVSFVKFSPNGKFILVGTLDN-------TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSE  265 (321)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  265 (321)
                      ..+..  . .+..+.|+|+| +++++..+.       ...+|.+.+++. ..+..+ ...   .. . .++|+.|+.++.
T Consensus       166 ~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~---~~-~-spdg~~l~~~~~  234 (347)
T 2gop_A          166 EEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSF---YA-V-DSDGERILLYGK  234 (347)
T ss_dssp             EEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESE---EE-E-EECSSCEEEEEC
T ss_pred             eeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cce---ee-E-CCCCCEEEEEEc
Confidence            44433  2 56788999999 777765432       334444334443 333322 221   11 2 478887776654


Q ss_pred             C--------CeEEEEEcccceEEEEecCCCCCeEE-EEecCCCceEEEEeecCCccEEEcccc
Q 020798          266 D--------SCVYLWELQSRKVVQKLEGHTDPVIS-VASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       266 d--------g~i~vwd~~~~~~~~~~~~h~~~v~~-~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +        ..|.+||  +++......+|...+.. +.|+ ++ ++++++.  ++.++|| ..
T Consensus       235 ~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~--~~~~~l~-~~  290 (347)
T 2gop_A          235 PEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFE--EGSVNLY-IW  290 (347)
T ss_dssp             CSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEE--TTEEEEE-EE
T ss_pred             cccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEec--CCcEEEE-Ec
Confidence            3        3688888  55554444566778886 9999 88 7777764  4688998 64

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=7.7e-15  Score=121.54  Aligned_cols=266  Identities=11%  Similarity=0.036  Sum_probs=173.2

Q ss_pred             cCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEE
Q 020798           42 SADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCV  121 (321)
Q Consensus        42 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  121 (321)
                      +.++.|.++|............  ...-.........+.+. .++.+++...++.|.+||..+++.+..+. .......+
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~--~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i   89 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFY--RANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYI   89 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHH--HHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEE
T ss_pred             CCCceEEEEECCCCEEhhhhHh--hhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEE
Confidence            4488999998754321100000  00000111335667774 35555666678899999999998877774 34567889


Q ss_pred             EECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCC-----CCeeEEEEccCCCEEEEEe-CCCeEEEEeCCCCceeeee
Q 020798          122 NFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHS-----DPVTAVDFNRDGTMIVTSS-YDGLCRIWDASTGHCMKTL  195 (321)
Q Consensus       122 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~  195 (321)
                      ++++++..+++...++.|.+||..+++....++...     .....+++ .++..+++.. .++.|.++|+.+++....+
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i  168 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL  168 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence            998888544444488999999999998877776443     13456777 4444444443 4889999999988876665


Q ss_pred             ccCCCCCeEEEEEccCCCEEEEEecC----------CeEEEEeCCCCcEEEEEeccCC-ceeEEEeEEEecCCeEEEEeC
Q 020798          196 IDDENPPVSFVKFSPNGKFILVGTLD----------NTLRLWNYSTGKILKTYTGHTN-SKYCISSTFSVTNGKYIVSGS  264 (321)
Q Consensus       196 ~~~~~~~~~~~~~~~~g~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  264 (321)
                      ...  .....++++|+|++++++..+          +.|.++|..+++....+....+ ....   ....++++.|.++.
T Consensus       169 ~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~---la~~~d~~~lyv~~  243 (328)
T 3dsm_A          169 TIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE---VQLNGTRDTLYWIN  243 (328)
T ss_dssp             ECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEE---EEECTTSCEEEEES
T ss_pred             EcC--CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCcee---EEEecCCCEEEEEc
Confidence            432  234568899999977766554          7899999999988777653221 1222   23346777777665


Q ss_pred             CCCeEEEEEcccceEEEE--ecCCCCCeEEEEecC-CCceEEEEee--cCCccEEEcccc
Q 020798          265 EDSCVYLWELQSRKVVQK--LEGHTDPVISVASHP-TENIIASGAL--DNDRTVKIWTQE  319 (321)
Q Consensus       265 ~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~p-~~~~l~s~~~--d~~~~i~iw~~~  319 (321)
                      .  .|.+||..+++....  +..+.....+++++| ++.++++...  -.++.|.+|+.+
T Consensus       244 ~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          244 N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            4  899999988775321  222235678999999 5666666510  135789999976

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.73  E-value=8.5e-14  Score=113.38  Aligned_cols=238  Identities=8%  Similarity=0.067  Sum_probs=164.9

Q ss_pred             ccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeee-eecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEE
Q 020798           72 HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKT-LIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCL  150 (321)
Q Consensus        72 h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  150 (321)
                      +...+.++++.++|+++++...++.|.+||.. ++.... .......+..++++++++.+++...++.|..||.......
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~   91 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKE   91 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEE
Confidence            34578999999999977776667899999987 543221 1234567889999999988887777888999997632212


Q ss_pred             EEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 020798          151 KVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~  230 (321)
                      ..++.....+..+++.+++.++++...++.+..||. +++............+..++++++|+.+++...++.|..||. 
T Consensus        92 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-  169 (299)
T 2z2n_A           92 YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-  169 (299)
T ss_dssp             EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred             EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-
Confidence            222234557889999999988887777889999998 444333222223445788999999988777666789999998 


Q ss_pred             CCcEEEEEe-ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEE-EecCCCCCeEEEEecCCCceEEEEeec
Q 020798          231 TGKILKTYT-GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ-KLEGHTDPVISVASHPTENIIASGALD  308 (321)
Q Consensus       231 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~~~d  308 (321)
                      +++...... .....   .......+++.++++...++.|.+||. +++... ....+...+.+++++++++++++..  
T Consensus       170 ~g~~~~~~~~~~~~~---~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~--  243 (299)
T 2z2n_A          170 SGDITEFKIPTPASG---PVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW--  243 (299)
T ss_dssp             TCCEEEEECSSTTCC---EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET--
T ss_pred             CCcEEEeeCCCCCCc---ceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc--
Confidence            666544211 11122   222333467887777777889999998 555432 2333556789999999998777653  


Q ss_pred             CCccEEEccc
Q 020798          309 NDRTVKIWTQ  318 (321)
Q Consensus       309 ~~~~i~iw~~  318 (321)
                      .++.|..|+.
T Consensus       244 ~~~~i~~~d~  253 (299)
T 2z2n_A          244 GANKIGRLTS  253 (299)
T ss_dssp             TTTEEEEEET
T ss_pred             CCceEEEECC
Confidence            3467888875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.72  E-value=7.8e-15  Score=121.49  Aligned_cols=252  Identities=13%  Similarity=0.050  Sum_probs=168.3

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT  104 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  104 (321)
                      ....+++. ++++.++...++.|.++|....        +.+..+. .......++++++++.+++...++.|.+||..+
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~--------~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t  114 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTF--------KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT  114 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTC--------CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECccc--------EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            45667774 4555566666789999987542        2223332 235678899988885545444789999999999


Q ss_pred             cceeeeeecCc-----ccEEEEEECCCCCEEEEee--CCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC
Q 020798          105 ATCLKTLIGHT-----NYVFCVNFNPQSNMIVSGA--FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY  177 (321)
Q Consensus       105 ~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  177 (321)
                      ++....+....     .....+++  +++.++.+.  .++.|.++|+++++....++... ....++++|++++++++..
T Consensus       115 ~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~  191 (328)
T 3dsm_A          115 YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDG  191 (328)
T ss_dssp             TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCC
T ss_pred             CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECC
Confidence            88766554322     13445666  355555554  48899999999998887776533 4568899999987776655


Q ss_pred             C----------CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEE--EeccCCce
Q 020798          178 D----------GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT--YTGHTNSK  245 (321)
Q Consensus       178 d----------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~  245 (321)
                      +          +.|.++|..+++....+..........++++|+++.++++..  .|.+||..+++....  +.......
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p  269 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKY  269 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCE
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCce
Confidence            4          789999999887665554332335788999999999887654  899999988775321  11101122


Q ss_pred             eEEEeEEEecCCeEEEEe----CCCCeEEEEEcccceEEEEecCCCCCeEEEEe
Q 020798          246 YCISSTFSVTNGKYIVSG----SEDSCVYLWELQSRKVVQKLEGHTDPVISVAS  295 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~  295 (321)
                      ..  ..+.+.++..+++.    ..++.|.+||.. ++.+..+..-..| ..++|
T Consensus       270 ~g--i~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P-~~~~~  319 (328)
T 3dsm_A          270 YG--LTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIP-GAFCW  319 (328)
T ss_dssp             EE--EEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESE-EEEEE
T ss_pred             EE--EEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCc-ceEEE
Confidence            22  22332367777776    678999999998 8877776532222 44444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.71  E-value=3e-13  Score=113.66  Aligned_cols=273  Identities=10%  Similarity=-0.015  Sum_probs=173.0

Q ss_pred             EECCCCCEEEEecC--Cc---eEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe----------CC
Q 020798           30 KFSHDGRLLASSSA--DK---TLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS----------DD   94 (321)
Q Consensus        30 ~~s~~g~~l~~~~~--d~---~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~----------~d   94 (321)
                      ...|+++++++...  ..   .|.++|.....        .+..+.....+  .++++|||++++.+.          .+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~--------~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~   96 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGS--------ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCe--------EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCC
Confidence            44578887777653  22   67888765422        22233322222  899999999998875          36


Q ss_pred             CcEEEEecCCcceeeeeecC-------cccEEEEEECCCCCEEEEeeC--CCcEEEEecCCCEEEEE-EeCCCCCeeEEE
Q 020798           95 KTIRLWDVPTATCLKTLIGH-------TNYVFCVNFNPQSNMIVSGAF--DETVRIWDVKTGKCLKV-LPAHSDPVTAVD  164 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~  164 (321)
                      +.|.+||..+.+.+..+...       ......+.++|||++|+.+..  ++.|.++| .+++.+.. ++...    ++.
T Consensus        97 ~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~  171 (373)
T 2mad_H           97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYH  171 (373)
T ss_pred             CeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEE
Confidence            78999999888766654321       123457899999999988764  47899999 99988777 65322    234


Q ss_pred             EccCC-CEEEEEeCCCeEEEEeCCCCceeeeec-----cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc--EEE
Q 020798          165 FNRDG-TMIVTSSYDGLCRIWDASTGHCMKTLI-----DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK--ILK  236 (321)
Q Consensus       165 ~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~--~~~  236 (321)
                      +.|++ +.+++.+.||.+.++|. +++......     ....+......+.+++..++..+..+.+.+.|+....  .+.
T Consensus       172 ~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~  250 (373)
T 2mad_H          172 IHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA  250 (373)
T ss_pred             EEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEee
Confidence            45554 45667778999999999 766553221     1111111234556665554444567899999986542  223


Q ss_pred             EEeccCC-------ceeEEEeEEEecCCeEEEEeCC----------CCeEEEEEcccceEEEEecCCCCCeEEEEecCCC
Q 020798          237 TYTGHTN-------SKYCISSTFSVTNGKYIVSGSE----------DSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE  299 (321)
Q Consensus       237 ~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~  299 (321)
                      .+.....       ...........+++..+..+..          .+.|.++|+.+++.+.++... ....+++|+|||
T Consensus       251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg  329 (373)
T 2mad_H          251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDG  329 (373)
T ss_pred             eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCC
Confidence            2221100       0000111222456666555432          357999999999998888643 357999999999


Q ss_pred             c-eEEEEeecCCccEEEccccc
Q 020798          300 N-IIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       300 ~-~l~s~~~d~~~~i~iw~~~~  320 (321)
                      + ++.++.. .++.|.++|.+.
T Consensus       330 ~~~l~v~~~-~~~~V~ViD~~t  350 (373)
T 2mad_H          330 GPDLYALSA-GTEVLHIYDAGA  350 (373)
T ss_pred             CeEEEEEcC-CCCeEEEEECCC
Confidence            9 6666653 257899999753

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.68  E-value=9.9e-14  Score=113.95  Aligned_cols=237  Identities=11%  Similarity=0.121  Sum_probs=158.0

Q ss_pred             ccEEEEEECCCCCEEEE-------EeCCCcEEEEecCCcceeeeee----cCcccEEEEEECCC-CCEEEEeeCCCcEEE
Q 020798           74 QGVSDLVFSSDSRFLVS-------ASDDKTIRLWDVPTATCLKTLI----GHTNYVFCVNFNPQ-SNMIVSGAFDETVRI  141 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~-------~~~d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~  141 (321)
                      ....+++|+++++++++       +..++.|.+||..+++......    ++...+..++++++ ++.+++. ....|.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~   96 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEE
Confidence            45678999999987777       5778899999987776432211    24466889999999 6545544 3447899


Q ss_pred             EecCCCEEEEE-EeC----CCCCeeEEEEccCCCEEEEEeCC---------------CeEEEEeCCCCceeeeeccCCCC
Q 020798          142 WDVKTGKCLKV-LPA----HSDPVTAVDFNRDGTMIVTSSYD---------------GLCRIWDASTGHCMKTLIDDENP  201 (321)
Q Consensus       142 wd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~~~d~~~~~~~~~~~~~~~~  201 (321)
                      ||.. ++.... ...    ....+..+++.++++++++...+               +.+..+|.. ++..... . ...
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~-~~~  172 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T-AFQ  172 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E-EES
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c-CCC
Confidence            9988 654433 221    12347899999999887776654               567777765 4432221 1 122


Q ss_pred             CeEEEEEc----cCCCEEEEE-ecCCeEEEEeCC-CCcE-----EEEEeccC-CceeEEEeEEEecCCeEEEEeCCCCeE
Q 020798          202 PVSFVKFS----PNGKFILVG-TLDNTLRLWNYS-TGKI-----LKTYTGHT-NSKYCISSTFSVTNGKYIVSGSEDSCV  269 (321)
Q Consensus       202 ~~~~~~~~----~~g~~l~~~-~~d~~i~i~d~~-~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i  269 (321)
                      ....++++    |+|+.++++ ..++.|.+||+. +++.     ...+..+. ..   .......++|.++++...++.|
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG---ADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE---EEEEEEBTTCCEEEEEETTTEE
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC---CCceEECCCCCEEEEEcCCCEE
Confidence            35678899    999766555 457899999976 4432     11222111 11   2223345678888877778899


Q ss_pred             EEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          270 YLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       270 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .+||..+++.+..+..+...+.+++++|+++.|..++. .++.|..|+.+
T Consensus       250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~-~~~~l~~~~~~  298 (314)
T 1pjx_A          250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH-ENNAVWKFEWQ  298 (314)
T ss_dssp             EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET-TTTEEEEEECS
T ss_pred             EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC-CCCeEEEEeCC
Confidence            99998867766666666678999999999985554443 34678888765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.68  E-value=2.4e-14  Score=131.46  Aligned_cols=244  Identities=15%  Similarity=0.071  Sum_probs=152.5

Q ss_pred             CCcccEEEEEECCCCCEEEEecCC-----ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           21 GHLRAISSVKFSHDGRLLASSSAD-----KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      +|...+..++|||||++||.++.+     ..|++|++.+...        +. ...+...+..++|+|| +.|+.++.++
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~--------~~-~~~~~~~~~~~~wspD-~~l~~~~~~~  229 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP--------LA-DELKWVKFSGLAWLGN-DALLYSRFAE  229 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE--------EE-EEEEEEESCCCEESTT-SEEEEEECCC
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC--------CC-ccCCCceeccEEEECC-CEEEEEEecC
Confidence            344578899999999999886543     4699998764321        11 1112222357899999 9888887665


Q ss_pred             c--------------EEEEecCCcce----eeeeecCcccEEEEEECCCCCEEEEeeCC-----CcEEEEecCCCE-E-E
Q 020798           96 T--------------IRLWDVPTATC----LKTLIGHTNYVFCVNFNPQSNMIVSGAFD-----ETVRIWDVKTGK-C-L  150 (321)
Q Consensus        96 ~--------------i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~-~-~  150 (321)
                      .              |++|++.++..    +.....+...+..+.|+|||++|+..+.+     ..|++||+.++. . .
T Consensus       230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  309 (741)
T 1yr2_A          230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV  309 (741)
T ss_dssp             C--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred             cccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence            4              88999877652    22222233457889999999988876644     389999998762 1 3


Q ss_pred             EEEeCCCCCeeEEEEccCCCEEEEEeC----CCeEEEEeCCCC-ceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 020798          151 KVLPAHSDPVTAVDFNRDGTMIVTSSY----DGLCRIWDASTG-HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLR  225 (321)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~  225 (321)
                      ..+..+........ .|+++.|+..+.    ++.|.+||+.++ .....+.......+..+.+. ++.++++...|+..+
T Consensus       310 ~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~  387 (741)
T 1yr2_A          310 TALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQ  387 (741)
T ss_dssp             EEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred             EEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence            44444544444443 488888877765    345999998875 23344444444445566666 556677778888776


Q ss_pred             EEeCC-CCcEEEEEeccCCceeEEEeEEEecCCeEEE----EeCCCCeEEEEEcccce
Q 020798          226 LWNYS-TGKILKTYTGHTNSKYCISSTFSVTNGKYIV----SGSEDSCVYLWELQSRK  278 (321)
Q Consensus       226 i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~dg~i~vwd~~~~~  278 (321)
                      ||.+. +++.+..+..+...  .+......+++..++    +....+.|++||+.+++
T Consensus       388 l~~~~~~g~~~~~l~~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          388 VLAFDLDGKPAGAVSLPGIG--SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEETTSCEEEECBCSSSC--EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEeCCCCceeeccCCCCe--EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            66543 45555555432111  122222235665444    33456889999998765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.67  E-value=2.5e-13  Score=115.73  Aligned_cols=239  Identities=10%  Similarity=0.088  Sum_probs=158.1

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCC--cEEEEecCCCEEEE
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE--TVRIWDVKTGKCLK  151 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~  151 (321)
                      .....|+|+++++++++...++.|++||..++........ ..... ++++|+++.|+++..++  .|.+++...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            3578899999999777777788999999988765443333 22333 89999999988887766  78888876554333


Q ss_pred             EE----eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeee----eccCCCCC-eEEEEEccC-CCEEEEEecC
Q 020798          152 VL----PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKT----LIDDENPP-VSFVKFSPN-GKFILVGTLD  221 (321)
Q Consensus       152 ~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~----~~~~~~~~-~~~~~~~~~-g~~l~~~~~d  221 (321)
                      .+    ......+..++++|++..|+.+..++.|+.||..++.....    ........ ...++++|+ +.++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            33    21445678899999555555577788999999987653221    11111111 128999995 5555555567


Q ss_pred             CeEEEEeCCCCcEEEEEeccC---C---------ceeEEEeEEEecCCeEEEEeC-CCCeEEEEEcccceEEEEecCC--
Q 020798          222 NTLRLWNYSTGKILKTYTGHT---N---------SKYCISSTFSVTNGKYIVSGS-EDSCVYLWELQSRKVVQKLEGH--  286 (321)
Q Consensus       222 ~~i~i~d~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h--  286 (321)
                      +.|+.|+....  +..+.++.   .         ...........++|.++++-. .++.|+.|++.+++.. .+.++  
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~  365 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVD  365 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTT
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCC
Confidence            89999997543  33333321   0         001122233456788888878 8999999998777643 33333  


Q ss_pred             -------------CCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          287 -------------TDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       287 -------------~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                                   -....+++++|++.++++-.  .+++|+.+++|
T Consensus       366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~--~n~~Ir~i~~e  409 (409)
T 3hrp_A          366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEA--WGKAIRKYAVE  409 (409)
T ss_dssp             CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES--TTCEEEEEEEC
T ss_pred             CCCcCCCChhceEeCCceEEEEcCCCCEEEEEC--CCCeEEEEEeC
Confidence                         23578999999988888765  45678877764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.66  E-value=2.8e-12  Score=104.35  Aligned_cols=238  Identities=11%  Similarity=0.119  Sum_probs=163.0

Q ss_pred             cccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceee-eeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE
Q 020798           73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLK-TLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK  151 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  151 (321)
                      ...+.++++.++|+..++...++.|.+||.. ++... .+......+..++++++++.+++...++.|..||.. ++...
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~   96 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE   96 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence            3567899999999988877778999999987 54332 122233568899999999887777667889999987 54332


Q ss_pred             -EEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 020798          152 -VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       152 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~  230 (321)
                       ..+.....+..+++.++++++++...++.+..+|.. ++............+..++++++|+++++...++.|..||. 
T Consensus        97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-  174 (300)
T 2qc5_A           97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-  174 (300)
T ss_dssp             EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred             ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-
Confidence             222234668899999999888777778899999987 54432222223445788999999996666556788999998 


Q ss_pred             CCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEE-EecCCCCCeEEEEecCCCceEEEEeecC
Q 020798          231 TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ-KLEGHTDPVISVASHPTENIIASGALDN  309 (321)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~~~d~  309 (321)
                      +++... +....... ........+++.++++....+.|.+|+. +++... .+..+...+.++++.++++++++..  .
T Consensus       175 ~g~~~~-~~~~~~~~-~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~--~  249 (300)
T 2qc5_A          175 TGKLEE-YPLPTNAA-APVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW--G  249 (300)
T ss_dssp             TCCEEE-EECSSTTC-CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET--T
T ss_pred             CCcEEE-eeCCCCCC-CcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc--C
Confidence            555543 32211111 1222333457877777777788999998 444332 2334456789999999998777653  3


Q ss_pred             CccEEEcccc
Q 020798          310 DRTVKIWTQE  319 (321)
Q Consensus       310 ~~~i~iw~~~  319 (321)
                      ++.|..|+.+
T Consensus       250 ~~~i~~~~~~  259 (300)
T 2qc5_A          250 ANQIGRITND  259 (300)
T ss_dssp             TTEEEEECTT
T ss_pred             CCeEEEECCC
Confidence            4678887753

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.63  E-value=4.5e-13  Score=111.48  Aligned_cols=272  Identities=14%  Similarity=0.135  Sum_probs=174.7

Q ss_pred             EEECCCCCEEEEecC-----CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe----------C
Q 020798           29 VKFSHDGRLLASSSA-----DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS----------D   93 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~-----d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~----------~   93 (321)
                      ....|+++.+++...     ++.|.+.|....        ..+..+..-..+ . ++++|||++++++.          .
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~--------~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~  107 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--------RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGER  107 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--------EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCC--------eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCC
Confidence            345799998887755     578888876532        223333322333 4 99999999887765          3


Q ss_pred             CCcEEEEecCCcceeeeeecC-------cccEEEEEECCCCCEEEEeeC--CCcEEEEecCCCEEEEEEeCCCCCeeEEE
Q 020798           94 DKTIRLWDVPTATCLKTLIGH-------TNYVFCVNFNPQSNMIVSGAF--DETVRIWDVKTGKCLKVLPAHSDPVTAVD  164 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  164 (321)
                      ++.|.+||..+.+....+...       ......+.++|||++++.+..  ++.|.++|+.+++.+..++...  . ...
T Consensus       108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~  184 (386)
T 3sjl_D          108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHI  184 (386)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEE
T ss_pred             CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-cee
Confidence            678999999999887766321       123456899999999887763  6899999999999888886532  1 223


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCC-Cceeeee---ccCCCCCe-EEEEEc-cCCCEEEEEecCCeEEEEeCCCCc--EEE
Q 020798          165 FNRDGTMIVTSSYDGLCRIWDAST-GHCMKTL---IDDENPPV-SFVKFS-PNGKFILVGTLDNTLRLWNYSTGK--ILK  236 (321)
Q Consensus       165 ~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~---~~~~~~~~-~~~~~~-~~g~~l~~~~~d~~i~i~d~~~~~--~~~  236 (321)
                      +....+.+++.+.||.+.+.++.. ++.....   ......++ ....|. ++|++++ .+.++.+.++|+.+..  .+.
T Consensus       185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~  263 (386)
T 3sjl_D          185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLP  263 (386)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECC
T ss_pred             ecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeec
Confidence            333445677888899888888865 4432211   11111111 123554 6786655 4558999999987654  332


Q ss_pred             EEecc----------CCceeEEEeEEEecCCeEEEEeC----------CCCeEEEEEcccceEEEEecCCCCCeEEEEec
Q 020798          237 TYTGH----------TNSKYCISSTFSVTNGKYIVSGS----------EDSCVYLWELQSRKVVQKLEGHTDPVISVASH  296 (321)
Q Consensus       237 ~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  296 (321)
                      .+...          ......+.  . .+++..++...          ....|.++|+.+++.+.++.. ..++.+++++
T Consensus       264 ~~~~~~~~~~~~g~~p~g~q~~a--~-~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs  339 (386)
T 3sjl_D          264 AVEALTEAERADGWRPGGWQQVA--Y-HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVS  339 (386)
T ss_dssp             CEESSCHHHHHTTEEECSSSCEE--E-ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEEC
T ss_pred             ceeccccccccccccCCCcceee--E-CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEEC
Confidence            22200          00001111  1 24555554432          125799999999999888764 2368899999


Q ss_pred             CCCc-eEEEEeecCCccEEEcccc
Q 020798          297 PTEN-IIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       297 p~~~-~l~s~~~d~~~~i~iw~~~  319 (321)
                      ||++ +|.+... .++.|.++|.+
T Consensus       340 ~D~~~~ly~tn~-~~~~VsViD~~  362 (386)
T 3sjl_D          340 QDEKPLLYALST-GDKTLYIHDAE  362 (386)
T ss_dssp             SSSSCEEEEEET-TTTEEEEEETT
T ss_pred             CCCCeEEEEEcC-CCCeEEEEECC
Confidence            9996 5555432 46789999875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.63  E-value=2.7e-12  Score=109.35  Aligned_cols=239  Identities=10%  Similarity=0.073  Sum_probs=153.3

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC--cEEEE
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK--TIRLW  100 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~--~i~iw  100 (321)
                      ......++|+|+|+++++...++.|+.|+.....         +..+........ ++|+++++.|+++..++  .|.++
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~---------~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~  199 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK---------VTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVY  199 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTE---------EEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEE
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCE---------EEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEE
Confidence            3468899999999988888878999999875321         111111122234 89999999988887766  78888


Q ss_pred             ecCCcceeeee----ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE----EeCCCCCe--eEEEEccC-C
Q 020798          101 DVPTATCLKTL----IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV----LPAHSDPV--TAVDFNRD-G  169 (321)
Q Consensus       101 d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~----~~~~~~~v--~~~~~~~~-~  169 (321)
                      +...+.....+    ......+.+++++|++..|+.+..++.|+.||..++.....    ...+....  ..++|+|+ +
T Consensus       200 d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g  279 (409)
T 3hrp_A          200 MKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDS  279 (409)
T ss_dssp             EGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTT
T ss_pred             EcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCC
Confidence            87655433332    11345577899999655666677788999999987653322    11222222  38999995 5


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeeccCC--------------CCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcE
Q 020798          170 TMIVTSSYDGLCRIWDASTGHCMKTLIDDE--------------NPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKI  234 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~  234 (321)
                      .++++...++.|+.|+....  ...+....              -.....++++|+|+++++-. .++.|+.|++.++..
T Consensus       280 ~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          280 NFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             EEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            56666667889999987643  22221111              12367899999999777766 788999999877764


Q ss_pred             EEEEeccCC------------ceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          235 LKTYTGHTN------------SKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       235 ~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                       ..+.++..            ...........+++.++++-..++.|+.+++
T Consensus       358 -~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          358 -STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             33333200            0011122233355777777777777776664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.62  E-value=2.4e-14  Score=119.54  Aligned_cols=181  Identities=15%  Similarity=0.134  Sum_probs=135.4

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCC---CCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNS---DSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~---~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      .++.+++++...++++|+.++.+ +|++......   ......+.... .+.. |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~-v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAV-VGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEE-EEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCEEE-EEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            58899999999999999988655 5987654310   00011222222 3555 999999  89999988 889999999


Q ss_pred             cCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeE
Q 020798          102 VPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLC  181 (321)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  181 (321)
                      +.+.........|...+..+.+.+.  .++++..||.+.+||++++....    +...|++++|+|+|  ++.+..||.+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            9877655556667777888777654  38888999999999999876543    34579999999999  6789999999


Q ss_pred             EEEeCCCCce--eeeec-----c---CCCCCeEEEEEccCCCEEEEEe
Q 020798          182 RIWDASTGHC--MKTLI-----D---DENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       182 ~~~d~~~~~~--~~~~~-----~---~~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      ++|+....+.  ...+.     .   .+...+..+.|.+++.++++-.
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9998877664  33331     1   2456799999999999888743

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.61  E-value=1.9e-12  Score=106.18  Aligned_cols=244  Identities=10%  Similarity=0.120  Sum_probs=157.7

Q ss_pred             cCCcccEEEEEECCCCCEEEE-------ecCCceEEEeeccccCCCCCCCCCccc--ccccccccEEEEEECCC-CCEEE
Q 020798           20 NGHLRAISSVKFSHDGRLLAS-------SSADKTLLTYSLSSISNSDSTPPSPLQ--KFTGHEQGVSDLVFSSD-SRFLV   89 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~-------~~~d~~v~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~~~~~~~-~~~l~   89 (321)
                      ........+++|+++|+++++       +..++.|..|+......      ....  ...++...+..++++++ +++++
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~------~~~~~~~~~~~~~~~~~i~~~~~~g~l~v   87 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK------TVICKPEVNGYGGIPAGCQCDRDANQLFV   87 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE------EEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE------EEEEecccCCCCCCCceEEEecCCCcEEE
Confidence            334456789999999988877       66788899997543211      0000  01124467899999999 76555


Q ss_pred             EEeCCCcEEEEecCCcceeee-eec----CcccEEEEEECCCCCEEEEeeCC---------------CcEEEEecCCCEE
Q 020798           90 SASDDKTIRLWDVPTATCLKT-LIG----HTNYVFCVNFNPQSNMIVSGAFD---------------ETVRIWDVKTGKC  149 (321)
Q Consensus        90 ~~~~d~~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~~wd~~~~~~  149 (321)
                      +. ..+.|.+||.. ++.... ...    ....+..++++++++.+++...+               +.|..||.. ++.
T Consensus        88 ~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           88 AD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred             EE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence            44 44479999987 654322 111    12347889999999887776554               567777765 543


Q ss_pred             EEEEeCCCCCeeEEEEc----cCCCEEEEE-eCCCeEEEEeCC-CCcee--eee--ccCCC-CCeEEEEEccCCCEEEEE
Q 020798          150 LKVLPAHSDPVTAVDFN----RDGTMIVTS-SYDGLCRIWDAS-TGHCM--KTL--IDDEN-PPVSFVKFSPNGKFILVG  218 (321)
Q Consensus       150 ~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~~~d~~-~~~~~--~~~--~~~~~-~~~~~~~~~~~g~~l~~~  218 (321)
                      .... .+......++++    |+++.++.+ ..++.|.+||.. .+...  ..+  ..... ..+..++++++|+++++.
T Consensus       165 ~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          165 IQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             EEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence            3322 223446788999    998765554 567899999976 33311  111  11111 346789999999988877


Q ss_pred             ecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe-EEEEeCCCCeEEEEEccc
Q 020798          219 TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK-YIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       219 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~  276 (321)
                      ..++.|.+||..+++.+..+..+......+  .+ .++++ ++++...++.|..|++..
T Consensus       244 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i--~~-~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          244 WGSSHIEVFGPDGGQPKMRIRCPFEKPSNL--HF-KPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             ETTTEEEEECTTCBSCSEEEECSSSCEEEE--EE-CTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cCCCEEEEEcCCCCcEeEEEeCCCCCceeE--EE-CCCCCEEEEEeCCCCeEEEEeCCC
Confidence            778899999988777666665443333222  23 56787 555566678899999864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.60  E-value=2.7e-13  Score=114.71  Aligned_cols=268  Identities=13%  Similarity=0.098  Sum_probs=172.8

Q ss_pred             CCCCEEEEecCC-----ceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe----------CCCcE
Q 020798           33 HDGRLLASSSAD-----KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS----------DDKTI   97 (321)
Q Consensus        33 ~~g~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~----------~d~~i   97 (321)
                      |+++.+++....     +.|.++|....        +.+..+..-..+  .++++||+++++++.          .++.|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--------~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V  151 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTG--------RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYV  151 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCC--------EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence            566766655442     68888887542        223333322233  799999999888775          36789


Q ss_pred             EEEecCCcceeeeeecC-------cccEEEEEECCCCCEEEEeeC--CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC
Q 020798           98 RLWDVPTATCLKTLIGH-------TNYVFCVNFNPQSNMIVSGAF--DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      .++|..+.+.+..+.--       ......+.++||+++++.+..  ++.|.+.|+.+.+.+..++....    ....|+
T Consensus       152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~  227 (426)
T 3c75_H          152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPA  227 (426)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEE
T ss_pred             EEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccC
Confidence            99999999887765421       123346789999999988764  57899999999998888775321    223343


Q ss_pred             C-CEEEEEeCCCeEEEEeCCCCceeee----eccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEE--EEEecc
Q 020798          169 G-TMIVTSSYDGLCRIWDASTGHCMKT----LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKIL--KTYTGH  241 (321)
Q Consensus       169 ~-~~l~~~~~dg~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~  241 (321)
                      + ..+++.+.||.+.+.+..+++....    +.....+....+.+.+++..++.....+.+.+.|.......  ..+...
T Consensus       228 g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~  307 (426)
T 3c75_H          228 SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL  307 (426)
T ss_dssp             ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred             CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence            3 4566677788877777755443321    11111111223567888888777778889999998655422  111100


Q ss_pred             ---C-------CceeEEEeEEEecCCeEEEEeC----------CCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCc-
Q 020798          242 ---T-------NSKYCISSTFSVTNGKYIVSGS----------EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN-  300 (321)
Q Consensus       242 ---~-------~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-  300 (321)
                         .       .....+  .+ .+++..+++..          .++.|.++|+.+.+.+.++.... ...+++|+||++ 
T Consensus       308 ~~~~i~~g~~p~g~~~v--a~-s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~  383 (426)
T 3c75_H          308 TEAERADDWRPGGWQQT--AY-HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEP  383 (426)
T ss_dssp             CTTTGGGTEEECSSSCE--EE-EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSC
T ss_pred             cccccccccccCCceee--EE-cCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCE
Confidence               0       000011  22 35555444432          23579999999999998886432 468999999999 


Q ss_pred             eEEEEeecCCccEEEcccc
Q 020798          301 IIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       301 ~l~s~~~d~~~~i~iw~~~  319 (321)
                      ++.+... .++.|.++|.+
T Consensus       384 ~lyv~n~-~s~~VsVID~~  401 (426)
T 3c75_H          384 LLYALSA-GTQTLHIYDAA  401 (426)
T ss_dssp             EEEEEET-TTTEEEEEETT
T ss_pred             EEEEEcC-CCCeEEEEECC
Confidence            7777654 35789999975

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.60  E-value=1.5e-11  Score=103.30  Aligned_cols=244  Identities=11%  Similarity=-0.017  Sum_probs=156.3

Q ss_pred             EEEECCCCCEEEEec----------CCceEEEeeccccCCCCCCCCC-cccccccccccEEEEEECCCCCEEEEEeC--C
Q 020798           28 SVKFSHDGRLLASSS----------ADKTLLTYSLSSISNSDSTPPS-PLQKFTGHEQGVSDLVFSSDSRFLVSASD--D   94 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~~~~~~~l~~~~~--d   94 (321)
                      .++++|||++++++.          .++.+.++|..........+.. .....  +......+.|+|||++|+++..  +
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~--~g~~p~~~~~spDG~~l~v~n~~~~  147 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD--VGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc--cCCCccceEECCCCCEEEEEecCCC
Confidence            899999999998875          3678889987543211100000 00000  0123457999999999998864  4


Q ss_pred             CcEEEEecCCcceeee-eecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEEEe-----CCCCCe-eEEEEc
Q 020798           95 KTIRLWDVPTATCLKT-LIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKVLP-----AHSDPV-TAVDFN  166 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~-----~~~~~v-~~~~~~  166 (321)
                      +.|.++| .+++.... +.. ..   ++.+.|++ +.+++.+.||.+.++|. +++......     ....++ ....+.
T Consensus       148 ~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~  221 (373)
T 2mad_H          148 PAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             CeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence            7899999 99887666 432 11   23445554 45666778999999999 776553321     112222 234566


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCc--eeeeecc--C-------CCCCeEEEEEccCCCEEEEEec----------CCeEE
Q 020798          167 RDGTMIVTSSYDGLCRIWDASTGH--CMKTLID--D-------ENPPVSFVKFSPNGKFILVGTL----------DNTLR  225 (321)
Q Consensus       167 ~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~--~-------~~~~~~~~~~~~~g~~l~~~~~----------d~~i~  225 (321)
                      +++..++..+..+.+.+.|..+..  ....+..  .       .......+.++|+++.++++..          ++.|.
T Consensus       222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~  301 (373)
T 2mad_H          222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence            666655555578899999986542  1121110  0       0112334789999988877653          35799


Q ss_pred             EEeCCCCcEEEEEeccCCceeEEEeEEEecCCe-EEEEeC-CCCeEEEEEcccceEEEEe
Q 020798          226 LWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK-YIVSGS-EDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       226 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~  283 (321)
                      ++|+.+++.+..+..... ...+   ...+||+ .++++. .++.|.++|+.+++.+..+
T Consensus       302 VID~~t~~vv~~i~~g~~-p~~i---~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          302 SVTGLVGQTSSQISLGHD-VDAI---SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEECCCCEEEEEEECCCC-cCeE---EECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            999999999888864332 2223   2346787 777776 5899999999999988773

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.60  E-value=4.1e-12  Score=103.59  Aligned_cols=221  Identities=13%  Similarity=0.108  Sum_probs=145.9

Q ss_pred             EEEEEECCC-CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe
Q 020798           76 VSDLVFSSD-SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP  154 (321)
Q Consensus        76 i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  154 (321)
                      .....|+++ +.++++...++.|..||..+++. ..+ .....+.+++++++++++++ . +..|.+||..+++......
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEe
Confidence            456789885 45566667788999999987764 222 34567889999999995554 3 5679999998877544332


Q ss_pred             CC----CCCeeEEEEccCCCEEEEEeC-----------CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE-
Q 020798          155 AH----SDPVTAVDFNRDGTMIVTSSY-----------DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-  218 (321)
Q Consensus       155 ~~----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-  218 (321)
                      ..    ...+..+++.|+|+++++...           .+.+..++.. ++.. .+.. .......++|+|+++.++.+ 
T Consensus        91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~-~~~~pngi~~spdg~~lyv~~  167 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFD-QVDISNGLDWSLDHKIFYYID  167 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEE-EESBEEEEEECTTSCEEEEEE
T ss_pred             cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEee-ccccccceEEcCCCCEEEEec
Confidence            21    234678999999997665432           2344444443 2222 2211 12235789999999877554 


Q ss_pred             ecCCeEEEEeC--CCCcEE--EEE---eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeE
Q 020798          219 TLDNTLRLWNY--STGKIL--KTY---TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVI  291 (321)
Q Consensus       219 ~~d~~i~i~d~--~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~  291 (321)
                      +.++.|.+||+  .++...  +.+   ......   .......++|.+.++....+.|..||..+++.+..+..+...++
T Consensus       168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~---p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t  244 (297)
T 3g4e_A          168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI---PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT  244 (297)
T ss_dssp             GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE---EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred             CCCCcEEEEeccCCCCcccCcEEEEECCCCCCC---CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence            45788999987  455432  112   111121   22233446788777777788899999988998888887777899


Q ss_pred             EEEec-CCCceEEEEe
Q 020798          292 SVASH-PTENIIASGA  306 (321)
Q Consensus       292 ~~~~~-p~~~~l~s~~  306 (321)
                      +++|. |+++.|..++
T Consensus       245 ~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          245 SCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEEEESGGGCEEEEEE
T ss_pred             EEEEeCCCCCEEEEEc
Confidence            99998 8876554443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.59  E-value=2.8e-12  Score=106.75  Aligned_cols=254  Identities=12%  Similarity=0.095  Sum_probs=160.5

Q ss_pred             EEEECCCCCEEEEec----------CCceEEEeeccccCCCCCCCCCcccccccc-------cccEEEEEECCCCCEEEE
Q 020798           28 SVKFSHDGRLLASSS----------ADKTLLTYSLSSISNSDSTPPSPLQKFTGH-------EQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~i~~~~~~~~~~~l~~   90 (321)
                      .++++|||++++++.          .++.|.+||.....        .+..+.-.       ......+.|+|||+++++
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyV  153 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF  153 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--------EEEEEECCCccccccCCCCceEEEcCCCCEEEE
Confidence            399999999988775          35779999875432        22222110       123456899999999988


Q ss_pred             EeC--CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC-CEEEEEEeCC----CCCee-E
Q 020798           91 ASD--DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT-GKCLKVLPAH----SDPVT-A  162 (321)
Q Consensus        91 ~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~----~~~v~-~  162 (321)
                      +..  ++.|.++|+.+++.+..+.....   ...+....+.+++.+.||.+.+.++.+ ++.......+    ..++. .
T Consensus       154 an~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~  230 (386)
T 3sjl_D          154 YQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH  230 (386)
T ss_dssp             EECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSC
T ss_pred             EEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccc
Confidence            764  68999999999998777643221   122222345666777888888888865 4432211111    12222 2


Q ss_pred             EEEc-cCCCEEEEEeCCCeEEEEeCCCCc--eeeeec--c------C-CCCCeEEEEEccCCCEEEEEec----------
Q 020798          163 VDFN-RDGTMIVTSSYDGLCRIWDASTGH--CMKTLI--D------D-ENPPVSFVKFSPNGKFILVGTL----------  220 (321)
Q Consensus       163 ~~~~-~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~--~------~-~~~~~~~~~~~~~g~~l~~~~~----------  220 (321)
                      .+|. ++|++ +..+.+|.+++.|..+..  ....+.  .      . .......++++++++.+++...          
T Consensus       231 ~~~~~~dG~~-~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~  309 (386)
T 3sjl_D          231 PAYSQKAGRL-VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA  309 (386)
T ss_dssp             CEEETTTTEE-EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred             ceeEcCCCcE-EEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCC
Confidence            3554 56654 446678999999997653  222221  0      0 0112234778999988887653          


Q ss_pred             CCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe-EEEE-eCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCC
Q 020798          221 DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK-YIVS-GSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT  298 (321)
Q Consensus       221 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  298 (321)
                      .+.|.++|+.+++.+..+.... ..+.   +...+|++ +|++ ...++.|.++|..+++.++.+.....+ +.+.+++|
T Consensus       310 ~~~V~viD~~t~kv~~~i~vg~-~~~~---lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p-~~l~~s~d  384 (386)
T 3sjl_D          310 SRFVVVLDAKTGERLAKFEMGH-EIDS---INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG-PQVITTAD  384 (386)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-EECE---EEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS-CCEEEECC
T ss_pred             CCEEEEEECCCCeEEEEEECCC-Ccce---EEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCC-ceeEECCc
Confidence            2579999999999998876432 1222   23346765 5555 556899999999999999888754333 45555554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.58  E-value=3.7e-12  Score=104.29  Aligned_cols=226  Identities=10%  Similarity=0.111  Sum_probs=146.5

Q ss_pred             ccccccccEEEEEECCCCC-EEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC
Q 020798           68 KFTGHEQGVSDLVFSSDSR-FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT  146 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  146 (321)
                      .+.....-.....|+++++ ++++...++.|..|+. +++ ...+..+...+..++++++|+.+++...++.|.+|+.. 
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            3333445567889999998 5667777889999987 443 34444556678899999999877666666789999975 


Q ss_pred             CEEEEEEeC----CCCCeeEEEEccCCCEEEE----EeC-------------CCeEEEEeCCCCceeeeeccCCCCCeEE
Q 020798          147 GKCLKVLPA----HSDPVTAVDFNRDGTMIVT----SSY-------------DGLCRIWDASTGHCMKTLIDDENPPVSF  205 (321)
Q Consensus       147 ~~~~~~~~~----~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~  205 (321)
                      ++.......    ....+..+++.|+|+++++    +..             .+.|..+|..+++.....   .......
T Consensus       116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~g  192 (305)
T 3dr2_A          116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNG  192 (305)
T ss_dssp             SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEE
T ss_pred             CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcc
Confidence            543222111    1134678999999998776    321             256777887666543322   1234577


Q ss_pred             EEEccCCCEEEEEecC------CeEEEEeCCCCcEE--EEEec-cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          206 VKFSPNGKFILVGTLD------NTLRLWNYSTGKIL--KTYTG-HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       206 ~~~~~~g~~l~~~~~d------~~i~i~d~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      ++|+|+++.|+++...      +.|.+|++..+.+.  ..+.. .....   ......++|.+. +++.+ .|.+|+. .
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~p---dgi~~d~~G~lw-v~~~~-gv~~~~~-~  266 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLP---DGFCVDRGGWLW-SSSGT-GVCVFDS-D  266 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCC---CSEEECTTSCEE-ECCSS-EEEEECT-T
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCC---CeEEECCCCCEE-EecCC-cEEEECC-C
Confidence            9999999988777665      68999998755411  11111 11111   112334677744 44444 4999997 4


Q ss_pred             ceEEEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          277 RKVVQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       277 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      ++.+..+..+. .+.+++|+|+++.|..++
T Consensus       267 g~~~~~~~~~~-~~~~~~f~~d~~~L~it~  295 (305)
T 3dr2_A          267 GQLLGHIPTPG-TASNCTFDQAQQRLFITG  295 (305)
T ss_dssp             SCEEEEEECSS-CCCEEEECTTSCEEEEEE
T ss_pred             CCEEEEEECCC-ceeEEEEeCCCCEEEEEc
Confidence            66666666554 588999999987776665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.55  E-value=1.8e-12  Score=108.03  Aligned_cols=262  Identities=12%  Similarity=0.079  Sum_probs=161.1

Q ss_pred             ccEEEEEECCCCCEEEEecC--CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC-----CCc
Q 020798           24 RAISSVKFSHDGRLLASSSA--DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD-----DKT   96 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~--d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-----d~~   96 (321)
                      ..+..++++|+|+++++...  ++.+.+|.+..... ...+. .......|...+..++++++++++++-..     ++.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~-~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPP-QSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCC-CCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCC-cccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            67889999999999888632  33244454421100 00000 00112245678999999999986665433     578


Q ss_pred             EEEEecCCcceeeeeec------CcccEEEEEECCCCCEE-EEee---CCCcEEEEecCCCEEEEEEeCCCCCee-EEEE
Q 020798           97 IRLWDVPTATCLKTLIG------HTNYVFCVNFNPQSNMI-VSGA---FDETVRIWDVKTGKCLKVLPAHSDPVT-AVDF  165 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~v~-~~~~  165 (321)
                      |.+||+.+++.+..+..      +...+..+++++++..+ ++..   .++.|.+||+.+++....+..|..... ...+
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            99999998876555432      22346788999865554 5444   578999999988876665544322110 1344


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCC-eEEEEeCC---CCc--------
Q 020798          166 NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN-TLRLWNYS---TGK--------  233 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~-~i~i~d~~---~~~--------  233 (321)
                      .+++..+.+.+.++.++.|.               ..+..++++|+|+.|+.+..++ .+..++..   .+.        
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS  239 (343)
T ss_dssp             EETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred             eECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence            55666666666777665442               1356799999999888877665 55555431   110        


Q ss_pred             EEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC-CCCCeEEEEecCCCceEEEEe
Q 020798          234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG-HTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      .+... ++......   ....++|.++++...++.|.+||..+++....... +.....++++.+++.++++.+
T Consensus       240 ~~~~~-g~~g~pdg---ia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          240 KIERY-SEKPICDG---ISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             TCEEE-EECCSCSC---EEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             ceEec-ccCCCCce---EEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            00111 11111111   22346788888888899999999855554322222 245679999999998888875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=8.7e-11  Score=95.70  Aligned_cols=226  Identities=12%  Similarity=0.084  Sum_probs=142.4

Q ss_pred             cCCcccEEEEEECCC-CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEE
Q 020798           20 NGHLRAISSVKFSHD-GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIR   98 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~-g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~   98 (321)
                      ..+..--....|+|+ +.++++...++.|..|+.....         ...+ .....+.+++++++|+++++ . ++.|.
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---------~~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~   76 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---------VQRV-TMDAPVSSVALRQSGGYVAT-I-GTKFC   76 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---------EEEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEE
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc---------EEEE-eCCCceEEEEECCCCCEEEE-E-CCeEE
Confidence            334445567899995 4566677778899999865321         1111 23457899999999995554 4 56799


Q ss_pred             EEecCCcceeeeeec----CcccEEEEEECCCCCEEEEeeC-----------CCcEEEEecCCCEEEEEEeCCCCCeeEE
Q 020798           99 LWDVPTATCLKTLIG----HTNYVFCVNFNPQSNMIVSGAF-----------DETVRIWDVKTGKCLKVLPAHSDPVTAV  163 (321)
Q Consensus        99 iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~~wd~~~~~~~~~~~~~~~~v~~~  163 (321)
                      +||..+++.......    ....+..++++|+|+++++...           .+.|+.++.. ++... +.........+
T Consensus        77 ~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi  154 (297)
T 3g4e_A           77 ALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGL  154 (297)
T ss_dssp             EEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEE
T ss_pred             EEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-Eeeccccccce
Confidence            999987764322211    1245788999999997665432           2344444433 33222 22223345789


Q ss_pred             EEccCCCEEE-EEeCCCeEEEEeC--CCCcee--eeec--cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEE
Q 020798          164 DFNRDGTMIV-TSSYDGLCRIWDA--STGHCM--KTLI--DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILK  236 (321)
Q Consensus       164 ~~~~~~~~l~-~~~~dg~i~~~d~--~~~~~~--~~~~--~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~  236 (321)
                      +|+|+++.++ +.+.++.|..||+  .++...  +.+.  .........++++++|++.++....+.|..||..+++.+.
T Consensus       155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred             EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence            9999998665 4556789999986  444321  1111  1112346789999999877777777889999998899888


Q ss_pred             EEeccCCceeEEEeEEEecCCeEEE
Q 020798          237 TYTGHTNSKYCISSTFSVTNGKYIV  261 (321)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~l~  261 (321)
                      .+..+.....+  +.|..++++.|.
T Consensus       235 ~i~~p~~~~t~--~~f~g~d~~~L~  257 (297)
T 3g4e_A          235 TVKLPVDKTTS--CCFGGKNYSEMY  257 (297)
T ss_dssp             EEECSSSBEEE--EEEESGGGCEEE
T ss_pred             EEECCCCCceE--EEEeCCCCCEEE
Confidence            88765433322  334435554443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.52  E-value=8.8e-13  Score=110.13  Aligned_cols=174  Identities=12%  Similarity=0.130  Sum_probs=126.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcc---------eee-eeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT---------CLK-TLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      .++.+++++...++++|+.++ +.+|++...+         ... ....+.. |..++|  +++.|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            578899999999999999875 6679864332         111 2234566 999999  88999988 8899999999


Q ss_pred             CCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeE
Q 020798          145 KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTL  224 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i  224 (321)
                      ++.......+.+..++.++.+.+.  .+++++.||.+.+||+.++....     ....+.+++|+|+|  ++.|..||.+
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            876555556677778888777654  38889999999999998776543     23468999999999  6788999999


Q ss_pred             EEEeCCCCcE--EEEEec----c--CCceeEEEeEEEecCCeEEEE
Q 020798          225 RLWNYSTGKI--LKTYTG----H--TNSKYCISSTFSVTNGKYIVS  262 (321)
Q Consensus       225 ~i~d~~~~~~--~~~~~~----~--~~~~~~~~~~~~~~~~~~l~~  262 (321)
                      ++|+....+.  .+.+..    +  ......+....+..++.++++
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9998877664  555521    1  011123333444467777775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.51  E-value=8.2e-12  Score=113.75  Aligned_cols=239  Identities=14%  Similarity=0.145  Sum_probs=148.2

Q ss_pred             cccccEEEEEECCCCCEEEEEe-----CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCC--------
Q 020798           71 GHEQGVSDLVFSSDSRFLVSAS-----DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE--------  137 (321)
Q Consensus        71 ~h~~~i~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------  137 (321)
                      +|...+..++|||||++|+.+.     ....|++||+.+++.+.... +......++|+ |++.|+.+..+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            3555788899999999888432     23469999999988544311 11112467899 999888887764        


Q ss_pred             -----cEEEEecCCCE----EEEEEeC-CCCCeeEEEEccCCCEEEEEeC----CCeEEEEeCCCCc-eeeeeccCCCCC
Q 020798          138 -----TVRIWDVKTGK----CLKVLPA-HSDPVTAVDFNRDGTMIVTSSY----DGLCRIWDASTGH-CMKTLIDDENPP  202 (321)
Q Consensus       138 -----~i~~wd~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~-~~~~~~~~~~~~  202 (321)
                           .|++|++.++.    .+...+. +......+.|+|+++.++....    .+.++++|+.++. ....+.... ..
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~-~~  282 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL-DA  282 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS-SS
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC-Cc
Confidence                 39999987653    2222223 3445678999999997755432    3589999997663 233333222 22


Q ss_pred             eEEEEEccCCCEEEEEe-cC---CeEEEEeCCCCcE--EEEEeccCCceeEEEeEEEecCCeEEEEe-CCCC--eEEEEE
Q 020798          203 VSFVKFSPNGKFILVGT-LD---NTLRLWNYSTGKI--LKTYTGHTNSKYCISSTFSVTNGKYIVSG-SEDS--CVYLWE  273 (321)
Q Consensus       203 ~~~~~~~~~g~~l~~~~-~d---~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg--~i~vwd  273 (321)
                      .... ++++|..|+..+ .+   +.|..+|+.++..  ...+..+....  +  .+. ++++.|+.. ..++  .|++|+
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~--~~s-~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV--L--TVH-SGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC--E--EEE-EETTEEEEEEEETTEEEEEEEC
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE--E--EEE-EECCEEEEEEEECCeeEEEEEE
Confidence            3333 566666655444 33   5799999887643  23444443332  2  333 345555544 4454  688899


Q ss_pred             cccceEEEEecC-CCCCeEEEEecCCCceEEEEee--cCCccEEEcccc
Q 020798          274 LQSRKVVQKLEG-HTDPVISVASHPTENIIASGAL--DNDRTVKIWTQE  319 (321)
Q Consensus       274 ~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~--d~~~~i~iw~~~  319 (321)
                      +..+. ...+.. ....+..+.++|++..|+....  ...+.|..||++
T Consensus       357 ~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~  404 (693)
T 3iuj_A          357 YEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK  404 (693)
T ss_dssp             TTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             CCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence            87543 344432 3456778888999877665532  234678888864

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.51  E-value=1.5e-11  Score=100.57  Aligned_cols=228  Identities=10%  Similarity=0.071  Sum_probs=146.1

Q ss_pred             ccCCcccEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcE
Q 020798           19 LNGHLRAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTI   97 (321)
Q Consensus        19 ~~~h~~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i   97 (321)
                      +..+......++|+|+|+ ++++...++.+..|+...          ....+..+...+..++++++|+++++...++.|
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----------~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v  109 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----------TVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAI  109 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----------CEEEEEESCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----------CEEEEeCCCCccceeeECCCCCEEEEECCCCEE
Confidence            333445667899999998 667777788898886521          123344455678999999999977666566789


Q ss_pred             EEEecCCcceeeeeecC-----cccEEEEEECCCCCEEEE----eeC-------------CCcEEEEecCCCEEEEEEeC
Q 020798           98 RLWDVPTATCLKTLIGH-----TNYVFCVNFNPQSNMIVS----GAF-------------DETVRIWDVKTGKCLKVLPA  155 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~~wd~~~~~~~~~~~~  155 (321)
                      .+|+.. ++. ..+..+     ...+..++++|+|+.+++    +..             .+.|+.+|..+++.....  
T Consensus       110 ~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--  185 (305)
T 3dr2_A          110 TRSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--  185 (305)
T ss_dssp             EEECTT-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--
T ss_pred             EEECCC-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--
Confidence            999976 442 222111     123567899999998886    332             256788887666543332  


Q ss_pred             CCCCeeEEEEccCCCEEEEEeCC------CeEEEEeCCCCcee--eeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 020798          156 HSDPVTAVDFNRDGTMIVTSSYD------GLCRIWDASTGHCM--KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW  227 (321)
Q Consensus       156 ~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~  227 (321)
                      .......++|+|+++.|+.+...      +.|..|++......  ..+..........++++++|++. ++..+ .|.+|
T Consensus       186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~  263 (305)
T 3dr2_A          186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVF  263 (305)
T ss_dssp             EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEE
T ss_pred             cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEE
Confidence            33456789999999977776654      78999998654311  11111112234568899999954 44444 59999


Q ss_pred             eCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC
Q 020798          228 NYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS  267 (321)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  267 (321)
                      +. +++.+..+..... .  ....+. ++++.|..++.++
T Consensus       264 ~~-~g~~~~~~~~~~~-~--~~~~f~-~d~~~L~it~~~~  298 (305)
T 3dr2_A          264 DS-DGQLLGHIPTPGT-A--SNCTFD-QAQQRLFITGGPC  298 (305)
T ss_dssp             CT-TSCEEEEEECSSC-C--CEEEEC-TTSCEEEEEETTE
T ss_pred             CC-CCCEEEEEECCCc-e--eEEEEe-CCCCEEEEEcCCe
Confidence            97 5777777765442 2  223344 6776666666554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.51  E-value=6.6e-11  Score=97.76  Aligned_cols=219  Identities=12%  Similarity=0.057  Sum_probs=142.7

Q ss_pred             EEEEEECCCC-CEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe
Q 020798           76 VSDLVFSSDS-RFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP  154 (321)
Q Consensus        76 i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  154 (321)
                      .....|+|++ .++++...++.|..||..+++.. .+. ....+.+++++|+++++++. .+ .|.+||..+++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            4567899974 45566667889999999877542 222 34578899999998877654 33 49999988776543322


Q ss_pred             CC----CCCeeEEEEccCCCEEEEEeC------CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCe
Q 020798          155 AH----SDPVTAVDFNRDGTMIVTSSY------DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNT  223 (321)
Q Consensus       155 ~~----~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~  223 (321)
                      ..    ...+..++++|+|+++++...      .+.+..++  +++.. .+.. .......++|+|+|+.++.+. .++.
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFA-DISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEE-EESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeC-CCcccCCeEEcCCCCEEEEEECCCCE
Confidence            11    134788999999987665442      24566666  34332 2211 122456889999998776554 5689


Q ss_pred             EEEEeCC--CC-cE-----EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEe
Q 020798          224 LRLWNYS--TG-KI-----LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVAS  295 (321)
Q Consensus       224 i~i~d~~--~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~  295 (321)
                      |.+||+.  ++ +.     ...+......   .......++|.++++...++.|.+||. +++.+..+..+...+.+++|
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~---p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af  278 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGG---MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF  278 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSE---EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCC---CCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEE
Confidence            9999985  55 31     2222111111   223334467877776666788999998 56777777777777999999


Q ss_pred             c-CCCceEEEEe
Q 020798          296 H-PTENIIASGA  306 (321)
Q Consensus       296 ~-p~~~~l~s~~  306 (321)
                      + |+++.|..++
T Consensus       279 ~g~d~~~L~vt~  290 (326)
T 2ghs_A          279 IGPDASRLLVTS  290 (326)
T ss_dssp             ESTTSCEEEEEE
T ss_pred             ecCCCCEEEEEe
Confidence            8 8877664443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.50  E-value=6.1e-12  Score=114.59  Aligned_cols=241  Identities=15%  Similarity=0.166  Sum_probs=146.8

Q ss_pred             CCcccEEEEEECCCCCEEEE-----ecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           21 GHLRAISSVKFSHDGRLLAS-----SSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~-----~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      +|...+..++|||||++||.     |+....|+++|+.+..        .+. ...+......++|+ |++.|+.++.+.
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--------~~~-~~~~~~k~~~~~Ws-Dg~~l~y~~~~~  195 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--------PLE-TPLKDVKFSGISWL-GNEGFFYSSYDK  195 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--------EEE-EEEEEEESCCCEEE-TTTEEEEEESSC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--------CCc-cccCCceeccEEEe-CCCEEEEEEecC
Confidence            46667889999999999984     4444688999886432        111 11111112567899 999998888774


Q ss_pred             -------------cEEEEecCCcce----eeeeec-CcccEEEEEECCCCCEEEEee----CCCcEEEEecCCCE-EEEE
Q 020798           96 -------------TIRLWDVPTATC----LKTLIG-HTNYVFCVNFNPQSNMIVSGA----FDETVRIWDVKTGK-CLKV  152 (321)
Q Consensus        96 -------------~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~----~dg~i~~wd~~~~~-~~~~  152 (321)
                                   .|++|++.+...    +..... |......+.++||+++|+...    ....|+++|+.++. ....
T Consensus       196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred             cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence                         399999877642    222222 344577889999999875432    23589999987653 3344


Q ss_pred             EeCCCCCeeEEEEccCCCEEEEEe-C---CCeEEEEeCCCCce--eeeeccCCCCCeEEEEEccCCCEEEEEecC-C--e
Q 020798          153 LPAHSDPVTAVDFNRDGTMIVTSS-Y---DGLCRIWDASTGHC--MKTLIDDENPPVSFVKFSPNGKFILVGTLD-N--T  223 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~~~~-~---dg~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d-~--~  223 (321)
                      +..+....... +++++..|+..+ .   .+.|..+|+.++..  ...+... ...+.  .|+++++.|+....+ +  .
T Consensus       276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~--~~s~~g~~lv~~~~~~g~~~  351 (693)
T 3iuj_A          276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-RQQVL--TVHSGSGYLFAEYMVDATAR  351 (693)
T ss_dssp             EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-CSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred             EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC-CCCEE--EEEEECCEEEEEEEECCeeE
Confidence            55555555444 566666555443 3   35789999987643  2333333 23333  889999888776654 3  6


Q ss_pred             EEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeC----CCCeEEEEEcccce
Q 020798          224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS----EDSCVYLWELQSRK  278 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~  278 (321)
                      |++||+..+ ....+...... . +......+++..++...    ..+.|..||+.+++
T Consensus       352 l~~~d~~g~-~~~~l~~p~~~-~-~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          352 VEQFDYEGK-RVREVALPGLG-S-VSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEECTTSC-EEEEECCSSSS-E-EEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEECCCC-eeEEeecCCCc-e-EEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            899998744 44444322111 1 21111223454444332    23789999987664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.50  E-value=2.5e-11  Score=102.75  Aligned_cols=240  Identities=11%  Similarity=0.065  Sum_probs=156.8

Q ss_pred             EEEECCCCCEEEEec----------CCceEEEeeccccCCCCCCCCCccccccc-------ccccEEEEEECCCCCEEEE
Q 020798           28 SVKFSHDGRLLASSS----------ADKTLLTYSLSSISNSDSTPPSPLQKFTG-------HEQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~i~~~~~~~~~~~l~~   90 (321)
                      .++++|||++|+++.          .++.|.++|.....        .+..+.-       .......+.++|||+++++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV  193 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--------PIADIELPDAPRFLVGTYQWMNALTPDNKNLLF  193 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--------EEEEEECCCccccccCCCcceEEEcCCCCEEEE
Confidence            789999999988876          36788898875432        1222110       0123456899999999998


Q ss_pred             EeC--CCcEEEEecCCcceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCCCEEEEE----EeCCCCCe-eE
Q 020798           91 ASD--DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKTGKCLKV----LPAHSDPV-TA  162 (321)
Q Consensus        91 ~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~----~~~~~~~v-~~  162 (321)
                      +..  ++.|.+.|+.+.+.+..+..-..    ....|++ ..+++.+.||.+.+.+..+++....    +.....++ ..
T Consensus       194 ~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~  269 (426)
T 3c75_H          194 YQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINH  269 (426)
T ss_dssp             EECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSC
T ss_pred             EecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeE
Confidence            764  57899999999988776653221    2233433 4556666778877777755543321    22122222 23


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCCCCcee--eeeccC--C-------CCCeEEEEEccCCCEEEEEec----------C
Q 020798          163 VDFNRDGTMIVTSSYDGLCRIWDASTGHCM--KTLIDD--E-------NPPVSFVKFSPNGKFILVGTL----------D  221 (321)
Q Consensus       163 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~--~-------~~~~~~~~~~~~g~~l~~~~~----------d  221 (321)
                      +.+.+++..++..+..+.+.+.|.......  ..+...  .       ......++++|+++.+++...          +
T Consensus       270 ~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s  349 (426)
T 3c75_H          270 PAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAAS  349 (426)
T ss_dssp             CEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCE
T ss_pred             eeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCC
Confidence            567888888877788899999998654321  111000  0       011123689999888777643          3


Q ss_pred             CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe-EEEEeC-CCCeEEEEEcccceEEEEe
Q 020798          222 NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK-YIVSGS-EDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       222 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~  283 (321)
                      +.|.++|+.+.+.+..+..... ...+   ...+|++ ++++.. .++.|.|+|+.+.+.++++
T Consensus       350 ~~VsVID~~T~kvv~~I~vg~~-P~gi---a~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          350 RFVVVLNAETGERINKIELGHE-IDSI---NVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEE-ECEE---EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCC-cCeE---EEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            5799999999999988864321 2222   2346787 777776 6999999999999999887

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.44  E-value=4.7e-14  Score=118.63  Aligned_cols=204  Identities=15%  Similarity=0.109  Sum_probs=115.9

Q ss_pred             CCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCC-Cee-
Q 020798           84 DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSD-PVT-  161 (321)
Q Consensus        84 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~-  161 (321)
                      ++..+++++.|+.|..||..+++.+..+..  ..+.+..+..++..+++++.|+.|+.||.++++.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567889999999999999999988776654  3344444456677788888999999999988876544432211 010 


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc
Q 020798          162 AVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH  241 (321)
Q Consensus       162 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  241 (321)
                      +..+. .+..+++++.++.++.||.++++....+....     ...++|++..+++++.++.|+.||.++++.+..+...
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~  159 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF  159 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence            00111 34567788889999999999988765443221     2345668888999999999999999998866554321


Q ss_pred             CCceeEEEeEEEecCC---eEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEE-EEecCCCce
Q 020798          242 TNSKYCISSTFSVTNG---KYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVIS-VASHPTENI  301 (321)
Q Consensus       242 ~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~-~~~~p~~~~  301 (321)
                      ...     ......+.   ..+++++.||.|+.||..+++.+.+... ..++.. ..+++++..
T Consensus       160 ~~~-----~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          160 DYA-----ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLR  217 (369)
T ss_dssp             EEC-----CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCE
T ss_pred             ccc-----CccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceE
Confidence            100     00111111   4566788899999999999998887763 445544 456666653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.43  E-value=2e-10  Score=104.19  Aligned_cols=257  Identities=11%  Similarity=0.117  Sum_probs=159.2

Q ss_pred             CCEEEEecCCceEEEeeccccCCCCCCCCCccccccc--ccccEEEEEECC---CCCEEEEEe------CCCcEEEEecC
Q 020798           35 GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTG--HEQGVSDLVFSS---DSRFLVSAS------DDKTIRLWDVP  103 (321)
Q Consensus        35 g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~~~---~~~~l~~~~------~d~~i~iwd~~  103 (321)
                      +..+++++.|+.+..+|..+...        +..+..  +......+..+|   ++. ++.++      .++.|..||..
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~--------~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~  191 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQR--------AWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAE  191 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCE--------EEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETT
T ss_pred             CCEEEEEccCCEEEEEECCCCCE--------eeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECC
Confidence            55777888899998888754321        111110  000000111112   444 44443      36899999999


Q ss_pred             CcceeeeeecC-------------------------------cccEEEEEECCCCCEEEEeeCCCc--------------
Q 020798          104 TATCLKTLIGH-------------------------------TNYVFCVNFNPQSNMIVSGAFDET--------------  138 (321)
Q Consensus       104 ~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~~~l~~~~~dg~--------------  138 (321)
                      +++.+..+...                               ......++++|+.+.++.+..++.              
T Consensus       192 tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~  271 (689)
T 1yiq_A          192 TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDN  271 (689)
T ss_dssp             TCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCC
T ss_pred             CCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCc
Confidence            99876554310                               001125678888888888877653              


Q ss_pred             -----EEEEecCCCEEEEEEeC--CC-------CCeeEEEEccCCC---EEEEEeCCCeEEEEeCCCCceeeeeccCC--
Q 020798          139 -----VRIWDVKTGKCLKVLPA--HS-------DPVTAVDFNRDGT---MIVTSSYDGLCRIWDASTGHCMKTLIDDE--  199 (321)
Q Consensus       139 -----i~~wd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--  199 (321)
                           |..+|.++++.+-.++.  |.       .+........+|+   .++.++.+|.++++|.++++.+.......  
T Consensus       272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~  351 (689)
T 1yiq_A          272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS  351 (689)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred             eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc
Confidence                 99999999998776654  21       1222222233554   68888999999999999998763221100  


Q ss_pred             -------------------------C-----------CCeEEEEEccCCCEEEEEec-----------------------
Q 020798          200 -------------------------N-----------PPVSFVKFSPNGKFILVGTL-----------------------  220 (321)
Q Consensus       200 -------------------------~-----------~~~~~~~~~~~g~~l~~~~~-----------------------  220 (321)
                                               .           ..-..++++|+...+++...                       
T Consensus       352 w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (689)
T 1yiq_A          352 WTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ  431 (689)
T ss_dssp             SEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred             cccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccc
Confidence                                     0           00112678888777776532                       


Q ss_pred             ----------------------CCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce
Q 020798          221 ----------------------DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK  278 (321)
Q Consensus       221 ----------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (321)
                                            ++.|..||+.+++.+-.+..+.....   ..+. ..+.+++.|+.||.|+.||.++++
T Consensus       432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~---g~~~-tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG---GTLS-TAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC---CEEE-ETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC---ccce-ECCCEEEEECCCCcEEEEECCCCc
Confidence                                  37799999999998877765432111   1112 356678889999999999999999


Q ss_pred             EEEEecCCCCC-eEEEEecCCCceEEE
Q 020798          279 VVQKLEGHTDP-VISVASHPTENIIAS  304 (321)
Q Consensus       279 ~~~~~~~h~~~-v~~~~~~p~~~~l~s  304 (321)
                      .+.+++..... -.-+.|..+|+..++
T Consensus       508 ~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          508 KLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             EEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cceeeeCCCCcccCceEEEECCEEEEE
Confidence            99888754322 234666778875544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=1.1e-09  Score=90.34  Aligned_cols=220  Identities=15%  Similarity=0.050  Sum_probs=137.7

Q ss_pred             ccEEEEEECCCC-CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           24 RAISSVKFSHDG-RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        24 ~~v~~~~~s~~g-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      .-...++|+|++ .++++...++.|..|+.....         ...+. ....+.+++++++|+++++. .+ .|.+||.
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~---------~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~  116 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGR---------KTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDT  116 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE---------EEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEET
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc---------EEEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEEC
Confidence            345678999975 456666678889888764321         11111 23568999999999877654 44 4999998


Q ss_pred             CCcceeeeeec----CcccEEEEEECCCCCEEEEeeC------CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798          103 PTATCLKTLIG----HTNYVFCVNFNPQSNMIVSGAF------DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus       103 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      .+++.......    ....+..++++|+|+++++...      .+.|..++  +++.... .........++|+|+++.+
T Consensus       117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~-~~~~~~~~~i~~s~dg~~l  193 (326)
T 2ghs_A          117 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL-FADISIPNSICFSPDGTTG  193 (326)
T ss_dssp             TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE-EEEESSEEEEEECTTSCEE
T ss_pred             CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe-eCCCcccCCeEEcCCCCEE
Confidence            87764322111    1245789999999987665432      24566666  4554332 2223346789999999866


Q ss_pred             EEE-eCCCeEEEEeCC--CC-cee--eee--ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCc
Q 020798          173 VTS-SYDGLCRIWDAS--TG-HCM--KTL--IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS  244 (321)
Q Consensus       173 ~~~-~~dg~i~~~d~~--~~-~~~--~~~--~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  244 (321)
                      +.+ +.++.|.+||+.  ++ ...  ..+  ..........+.++++|.+.++...++.|.+||. +++.+..+..+...
T Consensus       194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~  272 (326)
T 2ghs_A          194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQ  272 (326)
T ss_dssp             EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSB
T ss_pred             EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCC
Confidence            554 557899999975  44 311  111  1112234567899999987776666788999998 67777776544332


Q ss_pred             eeEEEeEEEecCCeEEE
Q 020798          245 KYCISSTFSVTNGKYIV  261 (321)
Q Consensus       245 ~~~~~~~~~~~~~~~l~  261 (321)
                      ..+  ..+..+++..|+
T Consensus       273 ~~~--~af~g~d~~~L~  287 (326)
T 2ghs_A          273 TTC--PAFIGPDASRLL  287 (326)
T ss_dssp             EEE--EEEESTTSCEEE
T ss_pred             cEE--EEEecCCCCEEE
Confidence            222  233325555443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.37  E-value=3.6e-10  Score=93.28  Aligned_cols=267  Identities=14%  Similarity=0.065  Sum_probs=162.9

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      +...+.++...++|. |..++.+  +..++.....         +..+...........+.  +..+..++.++.|..+|
T Consensus        58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g~~---------~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d  123 (330)
T 3hxj_A           58 GEIIECRPSIGKDGT-IYFGSDK--VYAINPDGTE---------KWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAIN  123 (330)
T ss_dssp             GGEEEECCEETTTTE-ECCSSCE--EEEECCCGGG---------GGGSCC-----CCEEEE--TTEEEEECTTSEEEEEC
T ss_pred             CCCcccceEEecCCc-EEEecCc--EEEECCCCcE---------EEEEECCCCcccCceEE--CCEEEEEecCCEEEEEc
Confidence            334567777777776 4445444  6666542211         11111111112222222  44577788889999999


Q ss_pred             cCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeE
Q 020798          102 VPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLC  181 (321)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  181 (321)
                      .. ++...........+.++...+++. +..++.++.|..+|.. ++....+......+.++...+++.+++ ++  +.+
T Consensus       124 ~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l  197 (330)
T 3hxj_A          124 TD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKV  197 (330)
T ss_dssp             TT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSE
T ss_pred             CC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEE
Confidence            88 665555444444455666676766 5556778999999988 776666665556677777777777554 44  778


Q ss_pred             EEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEE
Q 020798          182 RIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIV  261 (321)
Q Consensus       182 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (321)
                      ..+| .+++....... ....+..+...++|. +.+++.++.|..+|. +++.+..+.........   .....++ .|.
T Consensus       198 ~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~---~~~~~~g-~l~  269 (330)
T 3hxj_A          198 YAIN-PDGTEKWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESS---PVIGNTD-TIY  269 (330)
T ss_dssp             EEEC-TTSCEEEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSC---CEECTTS-CEE
T ss_pred             EEEC-CCCcEEEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCcccc---ceEcCCC-eEE
Confidence            8999 66655444332 223456677787775 455677788888884 56666555433221111   1222344 566


Q ss_pred             EeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          262 SGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       262 ~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .++.+|.|..+|. +++.+..+......+.++...+++.+++.+   .+|.+++...+.
T Consensus       270 v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt---~~G~~~~~~~~~  324 (330)
T 3hxj_A          270 FGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGT---RNGKFYALFNLE  324 (330)
T ss_dssp             EECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEEC---TTSCEEEEEC--
T ss_pred             EecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEc---CCCeEEEEeccc
Confidence            6788888999995 677666665555667788887888777653   468888876653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.36  E-value=1.2e-09  Score=91.87  Aligned_cols=223  Identities=13%  Similarity=0.163  Sum_probs=143.6

Q ss_pred             CCCCEEE-EEeCCCcEEEEecCCc----ceeeeee------cC-cccEEEEEECCCCCEEEEeeCC------CcEEEEec
Q 020798           83 SDSRFLV-SASDDKTIRLWDVPTA----TCLKTLI------GH-TNYVFCVNFNPQSNMIVSGAFD------ETVRIWDV  144 (321)
Q Consensus        83 ~~~~~l~-~~~~d~~i~iwd~~~~----~~~~~~~------~~-~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~  144 (321)
                      +++++|+ .+..++.|.++|+.+.    +..+.+.      .. ......+...|+| .++++..+      +.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            7777765 5667788999998654    4444441      01 1234567788999 77766555      78999999


Q ss_pred             CCCEEEEEEeCCCCC---eeEEEEccCCCEEEEEe-------------------CCCeEEEEeCCCCceeeeeccC-CCC
Q 020798          145 KTGKCLKVLPAHSDP---VTAVDFNRDGTMIVTSS-------------------YDGLCRIWDASTGHCMKTLIDD-ENP  201 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~-------------------~dg~i~~~d~~~~~~~~~~~~~-~~~  201 (321)
                      ++.+.+..++....+   ...+.|+|+++.+++..                   .+.+|.+||+.+++...++... ...
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            999988887633222   34588899999888875                   3689999999987766665443 112


Q ss_pred             CeEEEEE--ccCCCEEEEEec------CCeEEEEeCCCCcE--EEEE--ecc--CCc-----------eeEEEeEEEecC
Q 020798          202 PVSFVKF--SPNGKFILVGTL------DNTLRLWNYSTGKI--LKTY--TGH--TNS-----------KYCISSTFSVTN  256 (321)
Q Consensus       202 ~~~~~~~--~~~g~~l~~~~~------d~~i~i~d~~~~~~--~~~~--~~~--~~~-----------~~~~~~~~~~~~  256 (321)
                      ....+.|  +|+++++++++.      +++|.+|....++.  ++.+  ...  ...           ..........+|
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            3344555  999999888774      55787776554432  1111  110  000           001122334578


Q ss_pred             CeEEEEeC-CCCeEEEEEccc---ceEEEEecCCC----------C----CeEEEEecCCCceEEEEe
Q 020798          257 GKYIVSGS-EDSCVYLWELQS---RKVVQKLEGHT----------D----PVISVASHPTENIIASGA  306 (321)
Q Consensus       257 ~~~l~~~~-~dg~i~vwd~~~---~~~~~~~~~h~----------~----~v~~~~~~p~~~~l~s~~  306 (321)
                      |++|.++. ..+.|.+||+..   .+++..+....          .    .-..++++|||++|.++.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            88777654 578999999853   35555543220          1    237899999999988876

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.34  E-value=1.3e-09  Score=98.78  Aligned_cols=257  Identities=12%  Similarity=0.119  Sum_probs=160.2

Q ss_pred             CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccc-c----ccEEE-EEECCCCCEEEEEeC------CCcEEEEe
Q 020798           34 DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH-E----QGVSD-LVFSSDSRFLVSASD------DKTIRLWD  101 (321)
Q Consensus        34 ~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h-~----~~i~~-~~~~~~~~~l~~~~~------d~~i~iwd  101 (321)
                      ++..+++++.|+.+..+|..+...        +..+..+ .    ..+.. ...  .+..++.++.      ++.|..+|
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~--------~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D  196 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKE--------VWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYD  196 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCE--------EEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCE--------EeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEE
Confidence            356777888899998888754321        1111111 0    01110 011  1334444443      68999999


Q ss_pred             cCCcceeeeeecCcc--------------------------------cEEEEEECCCCCEEEEeeCCC------------
Q 020798          102 VPTATCLKTLIGHTN--------------------------------YVFCVNFNPQSNMIVSGAFDE------------  137 (321)
Q Consensus       102 ~~~~~~~~~~~~~~~--------------------------------~v~~~~~~~~~~~l~~~~~dg------------  137 (321)
                      ..+++.+..+.....                                ....++++|+++.++.+..++            
T Consensus       197 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~  276 (677)
T 1kb0_A          197 AETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKG  276 (677)
T ss_dssp             TTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTC
T ss_pred             CCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccC
Confidence            999987655432111                                112467888888888776553            


Q ss_pred             -------cEEEEecCCCEEEEEEeC--CC-------CCeeEEEEccCC---CEEEEEeCCCeEEEEeCCCCceeeeeccC
Q 020798          138 -------TVRIWDVKTGKCLKVLPA--HS-------DPVTAVDFNRDG---TMIVTSSYDGLCRIWDASTGHCMKTLIDD  198 (321)
Q Consensus       138 -------~i~~wd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  198 (321)
                             .|..+|.++++.+-.++.  |.       .....+....+|   ..++.++.+|.++++|.++++.+......
T Consensus       277 gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~  356 (677)
T 1kb0_A          277 GDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFV  356 (677)
T ss_dssp             CCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred             CCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccc
Confidence                   499999999988766653  21       112223333466   57888999999999999999876543211


Q ss_pred             CC----------CCe------------------------EEEEEccCCCEEEEEecC-----------------------
Q 020798          199 EN----------PPV------------------------SFVKFSPNGKFILVGTLD-----------------------  221 (321)
Q Consensus       199 ~~----------~~~------------------------~~~~~~~~g~~l~~~~~d-----------------------  221 (321)
                      ..          .++                        ..++++|++.++++...+                       
T Consensus       357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~  436 (677)
T 1kb0_A          357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS  436 (677)
T ss_dssp             CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred             ccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccc
Confidence            10          000                        146788988888775431                       


Q ss_pred             --------------------CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEE
Q 020798          222 --------------------NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ  281 (321)
Q Consensus       222 --------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  281 (321)
                                          +.|..||+.+++.+-.+..... ...  ..+. .++..++.++.||.+++||.++++.+.
T Consensus       437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~--g~~~-~~g~~v~~g~~dg~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP-WNG--GTLT-TAGNVVFQGTADGRLVAYHAATGEKLW  512 (677)
T ss_dssp             GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS-CCC--CEEE-ETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCC-CcC--cceE-eCCCEEEEECCCCcEEEEECCCCceee
Confidence                                6799999999998877653321 111  1122 356677778999999999999999998


Q ss_pred             EecCCC-CCeEEEEecCCCceEEE
Q 020798          282 KLEGHT-DPVISVASHPTENIIAS  304 (321)
Q Consensus       282 ~~~~h~-~~v~~~~~~p~~~~l~s  304 (321)
                      .+.... ..-.-+.+.++|+.++.
T Consensus       513 ~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          513 EAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEECSSCCCSCCEEEEETTEEEEE
T ss_pred             eeeCCCCcccCCEEEEeCCEEEEE
Confidence            887443 22234556678865544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.34  E-value=1.4e-10  Score=96.51  Aligned_cols=218  Identities=6%  Similarity=-0.064  Sum_probs=132.5

Q ss_pred             cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEee----------CCCcEEEEecCCCEEEEEEeCCC-------C
Q 020798           96 TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA----------FDETVRIWDVKTGKCLKVLPAHS-------D  158 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~-------~  158 (321)
                      .|.++|..+++.+..+..-..+  .+.++||+++++.+.          .++.|.+||+.+++.+..++...       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999988877544444  799999999888875          36889999999999888876441       2


Q ss_pred             CeeEEEEccCCCEEEEEeC--CCeEEE--EeCCCCceeeeeccCCCCC------eEEEEE--------------------
Q 020798          159 PVTAVDFNRDGTMIVTSSY--DGLCRI--WDASTGHCMKTLIDDENPP------VSFVKF--------------------  208 (321)
Q Consensus       159 ~v~~~~~~~~~~~l~~~~~--dg~i~~--~d~~~~~~~~~~~~~~~~~------~~~~~~--------------------  208 (321)
                      ....++++|||++++++..  +..+.+  +|+.+   +..+.......      -..+.+                    
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~  201 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence            3567999999999888874  467888  88865   12221100000      000111                    


Q ss_pred             -----------------ccCCCEEEEEecCCeEEEEeCCCCc--EEEEEecc------CCc-eeEEEeEEEecCCeEEEE
Q 020798          209 -----------------SPNGKFILVGTLDNTLRLWNYSTGK--ILKTYTGH------TNS-KYCISSTFSVTNGKYIVS  262 (321)
Q Consensus       209 -----------------~~~g~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~------~~~-~~~~~~~~~~~~~~~l~~  262 (321)
                                       .+++..++..+. +.+.+.|+....  .+..+...      ... ..........++++.++.
T Consensus       202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence                             222222233333 556666664322  22211100      000 000000122356665554


Q ss_pred             eCC---------CCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          263 GSE---------DSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       263 ~~~---------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +..         ++.+.++|+.+.+.+.++.... ...+++|+||++++..+....++.|.++|.+.
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             EeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            322         2356699999999988876543 57999999999855444432357899999753

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.34  E-value=3.4e-09  Score=89.24  Aligned_cols=260  Identities=12%  Similarity=0.069  Sum_probs=154.7

Q ss_pred             CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeec
Q 020798           34 DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIG  113 (321)
Q Consensus        34 ~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  113 (321)
                      ++..+++++.++.+..+|..+..        .+...............  .+..++.++.++.|..+|..+++.+.....
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~--------~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~  171 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGT--------VAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL  171 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCC--------EEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC--------EEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence            35567777788888888765321        11111111110011111  134677788899999999999887655443


Q ss_pred             CcccE-----EEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCC-------eeEEEEcc--CCCEEEEEeCCC
Q 020798          114 HTNYV-----FCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP-------VTAVDFNR--DGTMIVTSSYDG  179 (321)
Q Consensus       114 ~~~~v-----~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-------v~~~~~~~--~~~~l~~~~~dg  179 (321)
                      .....     ......  +..++.+..++.+..+|.++++..-........       +..+...|  .+..++.++.++
T Consensus       172 ~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g  249 (376)
T 3q7m_A          172 DMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG  249 (376)
T ss_dssp             CC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS
T ss_pred             CCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc
Confidence            22111     111111  457778888999999999998876655432110       00000111  245677888899


Q ss_pred             eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeE
Q 020798          180 LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKY  259 (321)
Q Consensus       180 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (321)
                      .+..+|.++++.......   .....+..  ++..+++++.++.|..+|..+++.+...........  .....  .+..
T Consensus       250 ~l~~~d~~tG~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~--~~~~~--~~~~  320 (376)
T 3q7m_A          250 NLTALDLRSGQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLL--TSPVL--YNGN  320 (376)
T ss_dssp             CEEEEETTTCCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCC--CCCEE--ETTE
T ss_pred             EEEEEECCCCcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcc--cCCEE--ECCE
Confidence            999999998876654321   12333333  456788888899999999999998776652211111  00111  2456


Q ss_pred             EEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          260 IVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      |+.++.+|.|.++|..+++.+.........+.+.....++ .|..++  .+|.|..|+
T Consensus       321 l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~-~l~v~~--~~G~l~~~~  375 (376)
T 3q7m_A          321 LVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADG-KLLIQA--KDGTVYSIT  375 (376)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETT-EEEEEB--TTSCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECC-EEEEEe--CCCEEEEEe
Confidence            7778889999999999999887776533343322222244 444454  457888876

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.33  E-value=1e-09  Score=92.41  Aligned_cols=262  Identities=8%  Similarity=0.009  Sum_probs=154.7

Q ss_pred             CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccc---------cccEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 020798           34 DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH---------EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT  104 (321)
Q Consensus        34 ~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h---------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  104 (321)
                      ++..+++++.++.+..+|..+...        +......         ...+.... ..++..++.++.++.|..+|..+
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~--------~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~t  122 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKE--------IWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSD  122 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCE--------EEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTT
T ss_pred             ECCEEEEEcCCCeEEEEEccCCce--------eeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCC
Confidence            356777788888898888753221        1111100         12222211 12345677888999999999999


Q ss_pred             cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCe-----eEEEEccCCCEEEEEeCCC
Q 020798          105 ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPV-----TAVDFNRDGTMIVTSSYDG  179 (321)
Q Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg  179 (321)
                      ++..................  +..++.++.++.|..+|.++++.+..........     ......  +..++++..++
T Consensus       123 G~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g  198 (376)
T 3q7m_A          123 GTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNG  198 (376)
T ss_dssp             CCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTT
T ss_pred             CCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCC
Confidence            98765544332211111121  4577788889999999999998776655432111     111222  34677788899


Q ss_pred             eEEEEeCCCCceeeeeccCCCCCe---EE---EEEcc--CCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeE
Q 020798          180 LCRIWDASTGHCMKTLIDDENPPV---SF---VKFSP--NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST  251 (321)
Q Consensus       180 ~i~~~d~~~~~~~~~~~~~~~~~~---~~---~~~~~--~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  251 (321)
                      .+..+|..+++.............   ..   +...|  .+..+++++.++.+..+|..+++.+......  ....   .
T Consensus       199 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~---~  273 (376)
T 3q7m_A          199 RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVND---F  273 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEE---E
T ss_pred             EEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCC---c
Confidence            999999998876654432111000   00   00011  2456777788999999999999887665422  1111   1


Q ss_pred             EEecCCeEEEEeCCCCeEEEEEcccceEEEEecCC-CCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGH-TDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      . . ++..+..++.++.|..+|..+++.+...... ...+......  +..|..++  .+|.|..+|.+
T Consensus       274 ~-~-~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~--~~g~l~~~d~~  336 (376)
T 3q7m_A          274 I-V-DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGD--SEGYLHWINVE  336 (376)
T ss_dssp             E-E-ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEEC--TTSEEEEEETT
T ss_pred             e-E-ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEe--CCCeEEEEECC
Confidence            1 1 2455666778899999999999988776522 2222233332  34555554  35778888764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.33  E-value=2.3e-10  Score=95.28  Aligned_cols=245  Identities=13%  Similarity=0.065  Sum_probs=152.1

Q ss_pred             EEEECCCCCEEEEec----------CCceEEEeeccccCCCCCCCCCcccccccc-------cccEEEEEECCCCCEEEE
Q 020798           28 SVKFSHDGRLLASSS----------ADKTLLTYSLSSISNSDSTPPSPLQKFTGH-------EQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~i~~~~~~~~~~~l~~   90 (321)
                      .++++|||++++++.          .++.|.+||.....        .+..+..+       ......++++|||+++++
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--------vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyV  140 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--------PIADIELPDAPRFSVGPRVHIIGNCASSACLLF  140 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--------EEEEEECCCccccccCCCcceEEEcCCCCEEEE
Confidence            699999999998885          36889999876532        22332211       023457899999999998


Q ss_pred             EeC--CCcEEE--EecCCcceeeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecCC-----CEEEE----EEeCC
Q 020798           91 ASD--DKTIRL--WDVPTATCLKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVKT-----GKCLK----VLPAH  156 (321)
Q Consensus        91 ~~~--d~~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~-----~~~~~----~~~~~  156 (321)
                      +..  +..+.+  +|..+   +..+..-..    ..+.|++ ..+++.+.|+.+.+.|+.+     ++...    .+...
T Consensus       141 an~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg  213 (368)
T 1mda_H          141 FLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS  213 (368)
T ss_dssp             EECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC
T ss_pred             EccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCC
Confidence            864  456888  88876   333321110    1123444 3455566788888888876     33221    11122


Q ss_pred             CCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCc--eeeeeccC------CC---CCeEEEEEccCCCEEEEEec-C---
Q 020798          157 SDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH--CMKTLIDD------EN---PPVSFVKFSPNGKFILVGTL-D---  221 (321)
Q Consensus       157 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~------~~---~~~~~~~~~~~g~~l~~~~~-d---  221 (321)
                      ..+.   . .+++..++..+. +.+.+.|..+..  ....+...      ..   .....++++|+++.++++.. +   
T Consensus       214 ~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~  288 (368)
T 1mda_H          214 SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS  288 (368)
T ss_dssp             SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC
T ss_pred             CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCc
Confidence            2333   3 556666666666 899999986532  22221100      00   11122679999998887643 2   


Q ss_pred             -----CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe-EEEEeC-CCCeEEEEEcccceEEEEecCCCCCeEEEE
Q 020798          222 -----NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK-YIVSGS-EDSCVYLWELQSRKVVQKLEGHTDPVISVA  294 (321)
Q Consensus       222 -----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  294 (321)
                           +.+.++|+.+.+.+..+..... ...+   ...+||+ .+++.. .++.|.++|+.+++.+..+.....+ ..++
T Consensus       289 ~~~~~~~~~ViD~~t~~vv~~i~vg~~-p~gi---~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P-~~i~  363 (368)
T 1mda_H          289 CLAAAENTSSVTASVGQTSGPISNGHD-SDAI---IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLS  363 (368)
T ss_dssp             TTSCEEEEEEEESSSCCEEECCEEEEE-ECEE---EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC-CEEE
T ss_pred             ccccCCCEEEEECCCCeEEEEEECCCC-cceE---EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC-CEEE
Confidence                 3577999999998887754331 2222   2346776 566666 5999999999999999998866544 6666


Q ss_pred             ecC
Q 020798          295 SHP  297 (321)
Q Consensus       295 ~~p  297 (321)
                      +.+
T Consensus       364 ~~~  366 (368)
T 1mda_H          364 VQN  366 (368)
T ss_dssp             CCC
T ss_pred             eec
Confidence            654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.32  E-value=2.6e-08  Score=79.62  Aligned_cols=221  Identities=6%  Similarity=0.006  Sum_probs=139.5

Q ss_pred             ccEEEEEECCCCCEEE-EEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCCCcEEEEecCCCEEEE
Q 020798           74 QGVSDLVFSSDSRFLV-SASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFDETVRIWDVKTGKCLK  151 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~  151 (321)
                      ..+..++|+++++.|+ +-..++.|..+++..................++++|+++.++ +....+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            4577899999765555 555678899999876543322222224578899999766554 44556789999986433222


Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEEeC---CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEE
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTSSY---DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLW  227 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~  227 (321)
                      ...........++++|++..++.+..   .+.|..+++.... ...+..........+++++++..|..+. ..+.|.++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            22222245688999997665555543   4688888876432 2222222223467899999877666555 56789999


Q ss_pred             eCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC-CCeEEEEecCCCc
Q 020798          228 NYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT-DPVISVASHPTEN  300 (321)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~  300 (321)
                      |+............ .....+.    ..++..+++....+.|.++|..+++.+..+.... .....+++.|++.
T Consensus       195 ~~~g~~~~~~~~~~-~~P~gi~----~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          195 NPAQPGRRKVLEGL-QYPFAVT----SYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             ETTEEEEEEEEECC-CSEEEEE----EETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             ecCCCceEEEecCC-CCceEEE----EeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            98755443333322 1222222    2356666666677899999999898888776433 2357788888764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.31  E-value=1.4e-09  Score=98.41  Aligned_cols=232  Identities=12%  Similarity=0.087  Sum_probs=150.4

Q ss_pred             CCCEEEEEeCCCcEEEEecCCcceeeeeecC-c----ccEE-EEEECCCCCEEEEeeC------CCcEEEEecCCCEEEE
Q 020798           84 DSRFLVSASDDKTIRLWDVPTATCLKTLIGH-T----NYVF-CVNFNPQSNMIVSGAF------DETVRIWDVKTGKCLK  151 (321)
Q Consensus        84 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~----~~v~-~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~  151 (321)
                      .+..++.++.|+.|..+|..+++.+..+... .    ..+. ...+  .+..++.++.      ++.|+.+|.++++.+-
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            3567888899999999999999887666543 1    1111 0111  2345555543      6899999999998876


Q ss_pred             EEeCCCCC--------------------------------eeEEEEccCCCEEEEEeCCC-------------------e
Q 020798          152 VLPAHSDP--------------------------------VTAVDFNRDGTMIVTSSYDG-------------------L  180 (321)
Q Consensus       152 ~~~~~~~~--------------------------------v~~~~~~~~~~~l~~~~~dg-------------------~  180 (321)
                      .+......                                ...++++|++..++.+..++                   .
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            66432211                                13578888888888877654                   5


Q ss_pred             EEEEeCCCCceeeeeccCCC--------CCeEEEEEccCC---CEEEEEecCCeEEEEeCCCCcEEEEEeccCCc-ee--
Q 020798          181 CRIWDASTGHCMKTLIDDEN--------PPVSFVKFSPNG---KFILVGTLDNTLRLWNYSTGKILKTYTGHTNS-KY--  246 (321)
Q Consensus       181 i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~g---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~--  246 (321)
                      |..+|.++++..-.+.....        .....+....+|   ..++.++.+|.+.++|..+++++..+...... ..  
T Consensus       285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~  364 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY  364 (677)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence            99999999987655432111        112233344477   67888999999999999999988766422100 00  


Q ss_pred             -----EEE------------------------eEEEecCCeEEEEeCC--------------------------------
Q 020798          247 -----CIS------------------------STFSVTNGKYIVSGSE--------------------------------  265 (321)
Q Consensus       247 -----~~~------------------------~~~~~~~~~~l~~~~~--------------------------------  265 (321)
                           .+.                        .....++..+++++..                                
T Consensus       365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  444 (677)
T 1kb0_A          365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK  444 (677)
T ss_dssp             CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred             CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence                 000                        0112244444544321                                


Q ss_pred             -----------CCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          266 -----------DSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       266 -----------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                                 .|.|..||+.+++.+.++.. ..++.+..+..++.++..++  .++.+++||.+.
T Consensus       445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~--~dg~l~a~D~~t  507 (677)
T 1kb0_A          445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGT--ADGRLVAYHAAT  507 (677)
T ss_dssp             EECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEEC--TTSEEEEEETTT
T ss_pred             ccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEEC--CCCcEEEEECCC
Confidence                       27899999999999887753 34566666777777777775  568999999763

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.30  E-value=1.1e-09  Score=99.42  Aligned_cols=281  Identities=11%  Similarity=0.086  Sum_probs=162.8

Q ss_pred             CCEEEEecCCceEEEeeccccCCCCC-CCCCccccccccc-ccE-EEEEECCCCCEEEEEeCCCcEEEEecCCcceeeee
Q 020798           35 GRLLASSSADKTLLTYSLSSISNSDS-TPPSPLQKFTGHE-QGV-SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTL  111 (321)
Q Consensus        35 g~~l~~~~~d~~v~~~~~~~~~~~~~-~~~~~~~~~~~h~-~~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  111 (321)
                      +..+++++.++.+..+|..+...... ............. ..+ ..+.+  .+..++.++.|+.|..+|..+++.+...
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            55677777788888887654321100 0000000000000 000 11122  3457888889999999999999876554


Q ss_pred             ecC--cccEEEEEECC--CCCEEEEee------CCCcEEEEecCCCEEEEEEeCCC------------------------
Q 020798          112 IGH--TNYVFCVNFNP--QSNMIVSGA------FDETVRIWDVKTGKCLKVLPAHS------------------------  157 (321)
Q Consensus       112 ~~~--~~~v~~~~~~~--~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~~------------------------  157 (321)
                      ...  ......+..+|  .+..++.+.      .++.|+.||.++++.+-.+....                        
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            431  11101111122  133444443      36899999999998776554210                        


Q ss_pred             -------CCeeEEEEccCCCEEEEEeCCCe-------------------EEEEeCCCCceeeeeccC-C-------CCCe
Q 020798          158 -------DPVTAVDFNRDGTMIVTSSYDGL-------------------CRIWDASTGHCMKTLIDD-E-------NPPV  203 (321)
Q Consensus       158 -------~~v~~~~~~~~~~~l~~~~~dg~-------------------i~~~d~~~~~~~~~~~~~-~-------~~~~  203 (321)
                             .....+++.|+...++.+..++.                   |..+|.++++..-..... +       ....
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~  307 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM  307 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence                   01125788888888888887763                   999999999876554322 1       1112


Q ss_pred             EEEEEccCCC---EEEEEecCCeEEEEeCCCCcEEEEEeccCCc-eeE------------------------EEe-----
Q 020798          204 SFVKFSPNGK---FILVGTLDNTLRLWNYSTGKILKTYTGHTNS-KYC------------------------ISS-----  250 (321)
Q Consensus       204 ~~~~~~~~g~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~------------------------~~~-----  250 (321)
                      .......+|+   .++.++.+|.++++|..+++++......... ...                        +.+     
T Consensus       308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G  387 (689)
T 1yiq_A          308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG  387 (689)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred             EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence            2222333565   6888899999999999999987544321100 000                        000     


Q ss_pred             ------EEEecCCeEEEEeC---------------------------------------------CCCeEEEEEcccceE
Q 020798          251 ------TFSVTNGKYIVSGS---------------------------------------------EDSCVYLWELQSRKV  279 (321)
Q Consensus       251 ------~~~~~~~~~l~~~~---------------------------------------------~dg~i~vwd~~~~~~  279 (321)
                            ....++..+++++.                                             .+|.|+.||+.+++.
T Consensus       388 g~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~  467 (689)
T 1yiq_A          388 AHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA  467 (689)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE
T ss_pred             ccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe
Confidence                  11123333343321                                             148899999999999


Q ss_pred             EEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          280 VQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       280 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +.++..+. ++....+...+.++..|+  .|+.|+.||.+.
T Consensus       468 ~W~~~~~~-~~~~g~~~tagglvf~gt--~dg~l~a~D~~t  505 (689)
T 1yiq_A          468 AWEVPYVT-IFNGGTLSTAGNLVFEGS--ADGRVIAYAADT  505 (689)
T ss_dssp             EEEEEESS-SCCCCEEEETTTEEEEEC--TTSEEEEEETTT
T ss_pred             EeEccCCC-CccCccceECCCEEEEEC--CCCcEEEEECCC
Confidence            88876543 344445666777888876  468999999763

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.30  E-value=1.2e-09  Score=94.99  Aligned_cols=220  Identities=15%  Similarity=0.174  Sum_probs=149.7

Q ss_pred             CCCCEEEEEeC-CCcEEEEecCCcceeeeeecC-cccEEEEEE-C-CCCCEEEEee------------------CCCcEE
Q 020798           83 SDSRFLVSASD-DKTIRLWDVPTATCLKTLIGH-TNYVFCVNF-N-PQSNMIVSGA------------------FDETVR  140 (321)
Q Consensus        83 ~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~  140 (321)
                      +||++++.... ++.|.+.|+.+.++.+.+.-. ......+++ . |+++++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            37888876654 557999999999877744321 234677887 5 8999988874                  345789


Q ss_pred             EEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC--------------------------------------eEE
Q 020798          141 IWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG--------------------------------------LCR  182 (321)
Q Consensus       141 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------------------------------~i~  182 (321)
                      +.|..+.+...++.... ....++++|+|+++++++.+.                                      .+.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999988887776433 346688999999988887553                                      356


Q ss_pred             EEeCCC--Cce-eeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCc------------EEEEEeccCCcee
Q 020798          183 IWDAST--GHC-MKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGK------------ILKTYTGHTNSKY  246 (321)
Q Consensus       183 ~~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~------------~~~~~~~~~~~~~  246 (321)
                      +.|.++  ++. +..+...  .....+.++|||+++++++ .+.+|.++|+.+.+            .+.......++  
T Consensus       258 VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP--  333 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP--  333 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE--
T ss_pred             EEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc--
Confidence            666665  322 2222111  1234689999999988766 57899999998653            33333222222  


Q ss_pred             EEEeEEEecCCeEEEEeCCCCeEEEEEccc----------ceEEEEecCCCCCe-----EEEEecCCCceEEEEeecC
Q 020798          247 CISSTFSVTNGKYIVSGSEDSCVYLWELQS----------RKVVQKLEGHTDPV-----ISVASHPTENIIASGALDN  309 (321)
Q Consensus       247 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~h~~~v-----~~~~~~p~~~~l~s~~~d~  309 (321)
                       .-..| .++|...++.-.|+.|.+||+..          .+.+.++..|.++-     .++..+|||++|.+...-.
T Consensus       334 -~h~aF-~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s  409 (595)
T 1fwx_A          334 -LHTAF-DGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS  409 (595)
T ss_dssp             -EEEEE-CTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred             -ceEEE-CCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence             22233 46786666778999999999987          56777887776542     2346789999999875433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.27  E-value=3.8e-10  Score=93.88  Aligned_cols=224  Identities=10%  Similarity=0.084  Sum_probs=137.2

Q ss_pred             ccEEEEEECCCCCEEEEEe--CCCcEEEEecCCcceeeee-------ecCcccEEEEEECCCCCEEEEeeC-----CCcE
Q 020798           74 QGVSDLVFSSDSRFLVSAS--DDKTIRLWDVPTATCLKTL-------IGHTNYVFCVNFNPQSNMIVSGAF-----DETV  139 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i  139 (321)
                      ..+..++++++|+.+++..  .++.++||.+.+++. ..+       ..+...+..++++++++.+++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5688999999999888753  234355555544432 211       124457899999999876555433     5789


Q ss_pred             EEEecCCCEEEEEEeCC------CCCeeEEEEccCCCE-EEEEe---CCCeEEEEeCCCCceeeeeccCCCC-CeEEEEE
Q 020798          140 RIWDVKTGKCLKVLPAH------SDPVTAVDFNRDGTM-IVTSS---YDGLCRIWDASTGHCMKTLIDDENP-PVSFVKF  208 (321)
Q Consensus       140 ~~wd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~-l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~  208 (321)
                      .+||+.+++.+..+...      ......+++++++.. +++..   .++.|.+||+.+++..+.+. .+.. ......+
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~~~~~~~~~~~  174 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GYPGIAPEDIDL  174 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TCTTTSCCSCCC
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CCCcccccccce
Confidence            99999999877666532      234578999986544 45554   67899999998776544332 1110 0001334


Q ss_pred             ccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC-eEEEEEccc---c-----eE
Q 020798          209 SPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS-CVYLWELQS---R-----KV  279 (321)
Q Consensus       209 ~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~---~-----~~  279 (321)
                      .++|..+.+...++.++.|..              ...   .....++++.|+.+..++ .+..++...   +     +.
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~--------------~~~---gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~  237 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHL--------------GVN---GIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAEL  237 (343)
T ss_dssp             EETTEECBEECTTSCEECCCC--------------CEE---EEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHH
T ss_pred             eECCEEEEeccCCCceeceec--------------ccc---eeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhh
Confidence            556776766677777766531              111   122346787777665555 555554321   0     00


Q ss_pred             EE--EecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          280 VQ--KLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       280 ~~--~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      ..  ...++......++++++|+++++..  .++.|.+|+.
T Consensus       238 ~~~~~~~g~~g~pdgia~d~~G~l~va~~--~~~~V~~~d~  276 (343)
T 2qe8_A          238 GSKIERYSEKPICDGISIDKDHNIYVGDL--AHSAIGVITS  276 (343)
T ss_dssp             HTTCEEEEECCSCSCEEECTTCCEEEEEG--GGTEEEEEET
T ss_pred             hcceEecccCCCCceEEECCCCCEEEEcc--CCCeEEEEEC
Confidence            00  1112333557899999999888865  3478999987

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.25  E-value=1.7e-12  Score=109.15  Aligned_cols=188  Identities=13%  Similarity=0.036  Sum_probs=101.9

Q ss_pred             CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeec
Q 020798           34 DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIG  113 (321)
Q Consensus        34 ~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  113 (321)
                      ++..+++++.|+.+..||..+..        .+..+..  ..+.+..+..+++.+++++.|+.|+.||..+++.+.....
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~--------~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGS--------IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCC--------EEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC--------EEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence            57789999999999999865422        2222322  2333444556777788888999999999988876555433


Q ss_pred             Cccc-EE-EEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q 020798          114 HTNY-VF-CVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC  191 (321)
Q Consensus       114 ~~~~-v~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  191 (321)
                      +... +. ...+. .+..+++++.++.++.||.++|+.+..+..+.    ...++|++..+++++.++.++.||.++++.
T Consensus        78 ~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           78 TIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             CHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred             cCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence            3211 10 00111 34567788889999999999998776665443    234567788899999999999999998875


Q ss_pred             eeeeccCCCCCeEEEEEccCC---CEEEEEecCCeEEEEeCCCCcEEEEEe
Q 020798          192 MKTLIDDENPPVSFVKFSPNG---KFILVGTLDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~g---~~l~~~~~d~~i~i~d~~~~~~~~~~~  239 (321)
                      ........   .....+.++.   ..+++++.++.+..||..+++.+-.+.
T Consensus       153 ~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          153 RWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            54332110   1112223321   456778889999999999998877665

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.24  E-value=2.4e-08  Score=78.88  Aligned_cols=197  Identities=12%  Similarity=0.047  Sum_probs=132.4

Q ss_pred             EEEEEECCCCCEEEEEeC--CCcEEEEecCCcceeeeeecCc-ccEEEEEECCCCCEE-EEeeCCCcEEEEecCCCEEEE
Q 020798           76 VSDLVFSSDSRFLVSASD--DKTIRLWDVPTATCLKTLIGHT-NYVFCVNFNPQSNMI-VSGAFDETVRIWDVKTGKCLK  151 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~  151 (321)
                      ...+.|++++.++++.+.  ++.|.++|+.+++.+..+.-.. .....+++.  ++.| ++...++.+.++|..+.+.+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence            578999998755555443  5789999999999877654211 122344554  4454 445567899999999999888


Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCC----CCeEEEEEccCCCEEEEEecCCeEEEE
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDEN----PPVSFVKFSPNGKFILVGTLDNTLRLW  227 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~~~~~d~~i~i~  227 (321)
                      .++....  ....+++++..++++..++.+.++|..+.+....+.....    ...+.+.+. +|..++....++.|.+.
T Consensus       101 ~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI  177 (266)
T 2iwa_A          101 NFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI  177 (266)
T ss_dssp             EEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence            8864311  1234566787777777789999999998877766543221    135567777 67554444457899999


Q ss_pred             eCCCCcEEEEEeccC----------CceeEEEeEEEecC-CeEEEEeCCCCeEEEEEcccc
Q 020798          228 NYSTGKILKTYTGHT----------NSKYCISSTFSVTN-GKYIVSGSEDSCVYLWELQSR  277 (321)
Q Consensus       228 d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~  277 (321)
                      |..+++.+..+....          ............++ .++++++...+.|.+.++...
T Consensus       178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            999999998886421          00011222333344 577888888899999988654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.22  E-value=1.8e-08  Score=79.48  Aligned_cols=195  Identities=12%  Similarity=0.049  Sum_probs=129.6

Q ss_pred             cEEEEEECCCCCEEEEeeC--CCcEEEEecCCCEEEEEEeCCCCC-eeEEEEccCCCEEE-EEeCCCeEEEEeCCCCcee
Q 020798          117 YVFCVNFNPQSNMIVSGAF--DETVRIWDVKTGKCLKVLPAHSDP-VTAVDFNRDGTMIV-TSSYDGLCRIWDASTGHCM  192 (321)
Q Consensus       117 ~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~  192 (321)
                      ....+.+++++..+++.+.  ++.|+++|+.+++.+..++....+ ...+++.  +..+. +.-.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3578999998654454443  579999999999988877643322 2345554  44444 4556889999999998877


Q ss_pred             eeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCc--eeEEEeEEEecCCeEEEEeCCCCeEE
Q 020798          193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS--KYCISSTFSVTNGKYIVSGSEDSCVY  270 (321)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~  270 (321)
                      .++... .+.  ...++++|+.++++..++.|.++|..+.+.+..+.-....  ...+.-.... ++..++....++.|.
T Consensus       100 ~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~  175 (266)
T 2iwa_A          100 KNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIA  175 (266)
T ss_dssp             EEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEE
Confidence            776433 111  2446678887877777889999999999888877643221  1111112222 677666666788999


Q ss_pred             EEEcccceEEEEecCC-------------CCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          271 LWELQSRKVVQKLEGH-------------TDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       271 vwd~~~~~~~~~~~~h-------------~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      +.|..+++.+..+.-.             ......++|+|+++.|..++. ....+..-++
T Consensus       176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk-~~~~v~~i~l  235 (266)
T 2iwa_A          176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK-LWPKLFEIKL  235 (266)
T ss_dssp             EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET-TCSEEEEEEE
T ss_pred             EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC-CCCeEEEEEE
Confidence            9999999988877531             124589999999865444432 2345555444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.19  E-value=2.5e-09  Score=88.22  Aligned_cols=260  Identities=14%  Similarity=0.076  Sum_probs=151.8

Q ss_pred             EEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 020798           27 SSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT  106 (321)
Q Consensus        27 ~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  106 (321)
                      .++....+|. +..++.++.+..|+ ....        .+.....+...+.++...+++. |..++.+  |..+|. +++
T Consensus        23 ~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~--------~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~   88 (330)
T 3hxj_A           23 SSPILAKNGT-IYLGSSNKNLYAIN-TDGS--------VKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGT   88 (330)
T ss_dssp             CCCEECTTSC-EECSSTTTTTEEEC-TTSC--------EEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGG
T ss_pred             cCceEccCCe-EEEEcCCCEEEEEC-CCCc--------EEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCc
Confidence            3445555554 56667778787776 3211        1112222334456777777776 4445444  888886 444


Q ss_pred             eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeC
Q 020798          107 CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA  186 (321)
Q Consensus       107 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  186 (321)
                      ................+.  +..+..++.++.+..+|.. ++...........+.++...+++. +..++.++.+..+|.
T Consensus        89 ~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~  164 (330)
T 3hxj_A           89 EKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINP  164 (330)
T ss_dssp             GGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECT
T ss_pred             EEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECC
Confidence            333222222222222222  4567778888999999988 766655555555566677777776 556778899999998


Q ss_pred             CCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC
Q 020798          187 STGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED  266 (321)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  266 (321)
                      . ++........ ...+..+...++|..++ ++  +.|..+| .+++.+..+........+   .....++. +..++.+
T Consensus       165 ~-g~~~~~~~~~-~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~---~~~~~~g~-l~v~t~~  234 (330)
T 3hxj_A          165 D-GTEKWRFKTN-DAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTR---PAISEDGT-IYVTSLD  234 (330)
T ss_dssp             T-SCEEEEEECS-SCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSC---CEECTTSC-EEEEETT
T ss_pred             C-CCEeEEEecC-CCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceec---eEECCCCe-EEEEcCC
Confidence            8 6654443322 23455566777887554 44  7899999 777776666543322222   22234554 5556667


Q ss_pred             CeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          267 SCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       267 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      +.|..+|. +++.+..+......+.++...+++.+.+. +  .++.|..+|.
T Consensus       235 ~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~-t--~~ggl~~~d~  282 (330)
T 3hxj_A          235 GHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFG-S--YDGHLYAINP  282 (330)
T ss_dssp             TEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEE-C--TTCEEEEECT
T ss_pred             CeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEe-c--CCCCEEEECC
Confidence            88888874 55555555544444455666666665554 3  2456777764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.16  E-value=3.7e-08  Score=76.92  Aligned_cols=183  Identities=12%  Similarity=0.122  Sum_probs=124.3

Q ss_pred             cEEEEEECCCCCEEEEeeCCC--cEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEeCCCCceee
Q 020798          117 YVFCVNFNPQSNMIVSGAFDE--TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS-SYDGLCRIWDASTGHCMK  193 (321)
Q Consensus       117 ~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~  193 (321)
                      ....+.|+ ++..+.+.+.+|  .|+++|+++++....++.... .......++++.+... -.++.+.++|..+.+.+.
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            34678888 566666777665  899999999998888765433 3333233345555544 468899999999988877


Q ss_pred             eeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCC--ceeEEEeEEEecCCeEEEEeCCCCeEEE
Q 020798          194 TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN--SKYCISSTFSVTNGKYIVSGSEDSCVYL  271 (321)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~v  271 (321)
                      ++.....    ...++++++.|+.+..++.|.++|..+.+.+..+.....  +...+.-.-. .+|+.++..-.+..|.+
T Consensus       122 ti~~~~e----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~-~~G~lyan~w~~~~I~v  196 (262)
T 3nol_A          122 SFNYDGE----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW-VDGEIFANVWQTNKIVR  196 (262)
T ss_dssp             EEECSSC----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE-ETTEEEEEETTSSEEEE
T ss_pred             EEECCCC----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE-ECCEEEEEEccCCeEEE
Confidence            7654322    234456788887777788899999999998888764321  1111111112 26877776667889999


Q ss_pred             EEcccceEEEEecCC------------CCCeEEEEecCCCceEEEEe
Q 020798          272 WELQSRKVVQKLEGH------------TDPVISVASHPTENIIASGA  306 (321)
Q Consensus       272 wd~~~~~~~~~~~~h------------~~~v~~~~~~p~~~~l~s~~  306 (321)
                      .|.++++.+..+.-.            .+-.+++|++|+++.|...+
T Consensus       197 IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          197 IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            999999988776532            12458899999876554443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.14  E-value=7.4e-08  Score=79.24  Aligned_cols=246  Identities=11%  Similarity=0.080  Sum_probs=145.2

Q ss_pred             ccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcc-----------cccccccccEEEEEECC-CCCEEEEE
Q 020798           24 RAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPL-----------QKFTGHEQGVSDLVFSS-DSRFLVSA   91 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-----------~~~~~h~~~i~~~~~~~-~~~~l~~~   91 (321)
                      .....++|.++|+++.++..++.|..|+...............           .........+..+++.+ +++++ .+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IV   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EE
Confidence            4456789999999888888888898886543110000000000           00001123578899997 66544 45


Q ss_pred             eCCCcEEEEecCCcceeeeeec-----CcccEEEEEECC-CCCEEEEeeC-----------------CCcEEEEecCCCE
Q 020798           92 SDDKTIRLWDVPTATCLKTLIG-----HTNYVFCVNFNP-QSNMIVSGAF-----------------DETVRIWDVKTGK  148 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~~wd~~~~~  148 (321)
                      ...+.+..+|..++.. ..+..     .......+++.+ +|+..++...                 ++.|..+|..+++
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            4445588888765532 22211     112467899999 8887666432                 3678889987776


Q ss_pred             EEEEEeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEeCCCCc--eeeeeccCCCCCeEEEEEccCCCEEEEEec-----
Q 020798          149 CLKVLPAHSDPVTAVDFNRDGTMIVTS-SYDGLCRIWDASTGH--CMKTLIDDENPPVSFVKFSPNGKFILVGTL-----  220 (321)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-----  220 (321)
                      ....... ......++++|+++.++.+ ...+.|..|++....  ....+.. ... ...++++++|++.++...     
T Consensus       177 ~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          177 TTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCccccc
Confidence            4332221 1234679999999866555 567899999987421  1111111 112 677899999987666544     


Q ss_pred             -----CCeEEEEeCCCCcEEEEEeccCCc-eeEEEeEEEecCCeEEEEeCCCCeEEEEEccc
Q 020798          221 -----DNTLRLWNYSTGKILKTYTGHTNS-KYCISSTFSVTNGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       221 -----d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (321)
                           .+.|..+|. .++.+..+....+. ...+..... .++.++++...++.|..+++..
T Consensus       254 ~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          254 MHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             ccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence                 467888886 47777777543221 011111112 4677777777788899998753

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.09  E-value=1.3e-07  Score=79.55  Aligned_cols=193  Identities=11%  Similarity=0.142  Sum_probs=127.1

Q ss_pred             CCCCEEE-EeeCCCcEEEEecCCC----EEEEEEe-------CCCCCeeEEEEccCCCEEEEEeCC------CeEEEEeC
Q 020798          125 PQSNMIV-SGAFDETVRIWDVKTG----KCLKVLP-------AHSDPVTAVDFNRDGTMIVTSSYD------GLCRIWDA  186 (321)
Q Consensus       125 ~~~~~l~-~~~~dg~i~~wd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~  186 (321)
                      ++.++|+ .+..++.|+++|+.+.    +....+.       ........+.+.|+| +++++..+      +.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            6777765 5667889999998755    5555552       111234567788999 77766555      78999999


Q ss_pred             CCCceeeeeccCCCCC--eEEEEEccCCCEEEEEe-------------------cCCeEEEEeCCCCcEEEEEeccCCce
Q 020798          187 STGHCMKTLIDDENPP--VSFVKFSPNGKFILVGT-------------------LDNTLRLWNYSTGKILKTYTGHTNSK  245 (321)
Q Consensus       187 ~~~~~~~~~~~~~~~~--~~~~~~~~~g~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~~~~~  245 (321)
                      .+.+.+.++.......  ...+.|+|+++.++++.                   ...+|.+||+.+++.+..+.......
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            9988877775332221  23477899999888874                   36899999999988888876531111


Q ss_pred             eEEEeEE-EecCCeEEEEeC------CCCeEEEEEcccceE--EEE--ecCC----------------CCCeEEEEecCC
Q 020798          246 YCISSTF-SVTNGKYIVSGS------EDSCVYLWELQSRKV--VQK--LEGH----------------TDPVISVASHPT  298 (321)
Q Consensus       246 ~~~~~~~-~~~~~~~l~~~~------~dg~i~vwd~~~~~~--~~~--~~~h----------------~~~v~~~~~~p~  298 (321)
                      ...-..+ ..++++++..++      .+++|.+|....++.  .+.  +...                ......+.++||
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            1111112 356787776665      567887776554321  111  1110                134678999999


Q ss_pred             CceEEEEeecCCccEEEcccc
Q 020798          299 ENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       299 ~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      +++|-++... .+.|.+|+..
T Consensus       332 GrfLYVSnrg-~d~VavfdV~  351 (462)
T 2ece_A          332 DKFLYLSLWG-IGEVRQYDIS  351 (462)
T ss_dssp             SCEEEEEETT-TTEEEEEECS
T ss_pred             CCEEEEEeCC-CCEEEEEEec
Confidence            9998887765 4689999864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.09  E-value=5.4e-08  Score=75.99  Aligned_cols=180  Identities=11%  Similarity=0.068  Sum_probs=122.6

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCee--EEEEccCCCEEEEEeCCCeEEEEeCCCCceeee
Q 020798          117 YVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVT--AVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKT  194 (321)
Q Consensus       117 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  194 (321)
                      ....+.|+. +..+.+.+.+|.|+++|+++++.+..+ ... ...  .+++.. ++++.+.-.++.+.+||..+.+.+.+
T Consensus        56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence            346777773 556677788889999999999877666 322 333  345432 33444555788999999999888877


Q ss_pred             eccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCce--eEEEeEEEecCCeEEEEeCCCCeEEEE
Q 020798          195 LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK--YCISSTFSVTNGKYIVSGSEDSCVYLW  272 (321)
Q Consensus       195 ~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~vw  272 (321)
                      +.....    ...++++++.|+.+..++.|.++|..+.+.+..+.-.....  ..+.-.-+ .+|+.++..-.+..|.+.
T Consensus       132 i~~~~e----GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~-~dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          132 TRYSGE----GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC-ANGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EECSSC----CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-ETTEEEEEETTCSEEEEE
T ss_pred             EeCCCc----eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE-eCCEEEEEECCCCeEEEE
Confidence            654322    13344678888888778999999999999888876433211  11111112 278777666678899999


Q ss_pred             EcccceEEEEecCC-------------CCCeEEEEecCCCc-eEEEE
Q 020798          273 ELQSRKVVQKLEGH-------------TDPVISVASHPTEN-IIASG  305 (321)
Q Consensus       273 d~~~~~~~~~~~~h-------------~~~v~~~~~~p~~~-~l~s~  305 (321)
                      |.++++.+..+.-.             .+-.+++|++|+++ +++||
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            99999988776431             13468899999764 55554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.08  E-value=4.2e-07  Score=70.35  Aligned_cols=183  Identities=13%  Similarity=0.060  Sum_probs=122.3

Q ss_pred             ccEEEEEECCCCCEEEEeeCC--CcEEEEecCCCEEEEEEeCCCCCe-eEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q 020798          116 NYVFCVNFNPQSNMIVSGAFD--ETVRIWDVKTGKCLKVLPAHSDPV-TAVDFNRDGTMIVTSSYDGLCRIWDASTGHCM  192 (321)
Q Consensus       116 ~~v~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  192 (321)
                      .....+.|++ +..+.+.+..  +.|+.+|+++++....++...... ..+++. .++.+...-.++.+.++|..+.+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEE
Confidence            3456888886 4555666654  489999999999888776544322 233433 2334444557899999999998887


Q ss_pred             eeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCc--eeEEEeEEEecCCeEEEEeCCCCeEE
Q 020798          193 KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNS--KYCISSTFSVTNGKYIVSGSEDSCVY  270 (321)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~  270 (321)
                      .++.....    ...+.+++..|+++..++.|.++|..+.+.+..+.-....  ...+.-.-. .+|+.++..-.+..|.
T Consensus        99 ~ti~~~~~----Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~-~~G~lyanvw~s~~I~  173 (243)
T 3mbr_X           99 ARFRYPGE----GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW-VNGELLANVWLTSRIA  173 (243)
T ss_dssp             EEEECSSC----CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-ETTEEEEEETTTTEEE
T ss_pred             EEEeCCCC----ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE-eCCEEEEEECCCCeEE
Confidence            77654322    2344567777777777889999999999988887643221  111111111 3687776665678999


Q ss_pred             EEEcccceEEEEecCC------------C-CCeEEEEecCCCc-eEEEE
Q 020798          271 LWELQSRKVVQKLEGH------------T-DPVISVASHPTEN-IIASG  305 (321)
Q Consensus       271 vwd~~~~~~~~~~~~h------------~-~~v~~~~~~p~~~-~l~s~  305 (321)
                      +.|.++++.+..+.-.            . +-.+++|++|+++ +++||
T Consensus       174 vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          174 RIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            9999999988776521            1 2458899999765 45554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.08  E-value=3.6e-07  Score=75.08  Aligned_cols=234  Identities=15%  Similarity=0.147  Sum_probs=139.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeec--------------------CcccEEEEEECCCCCEEEEee
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIG--------------------HTNYVFCVNFNPQSNMIVSGA  134 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~~~~  134 (321)
                      ...++++.+++++++++..++.|..|+..+++.. .+..                    .......+++.+++..|+.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            3467889999987888888999999998765432 1110                    012467899997333455554


Q ss_pred             CCCcEEEEecCCCEEEEEEeC-----CCCCeeEEEEcc-CCCEEEEEeC-----------------CCeEEEEeCCCCce
Q 020798          135 FDETVRIWDVKTGKCLKVLPA-----HSDPVTAVDFNR-DGTMIVTSSY-----------------DGLCRIWDASTGHC  191 (321)
Q Consensus       135 ~dg~i~~wd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~~~d~~~~~~  191 (321)
                      ..+.|..+|..++.. ..+..     .......+++.+ +|+++++...                 ++.+..+|..+++.
T Consensus        99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            445588888765532 22211     113467899999 8987666432                 36788888876653


Q ss_pred             eeeeccCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEeCCCCc--EEEEEeccCCceeEEEeEEEecCCeEEEEeCC---
Q 020798          192 MKTLIDDENPPVSFVKFSPNGKFILVG-TLDNTLRLWNYSTGK--ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSE---  265 (321)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---  265 (321)
                      .... .. ......++++|+|+.|.++ ...+.|.+|++....  ....+..... .   ......++|.++++...   
T Consensus       178 ~~~~-~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P---~gi~~d~~G~l~va~~~~~~  251 (322)
T 2fp8_A          178 TLLL-KE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-P---GNIKRNADGHFWVSSSEELD  251 (322)
T ss_dssp             EEEE-EE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-E---EEEEECTTSCEEEEEEEETT
T ss_pred             EEec-cC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-C---CCeEECCCCCEEEEecCccc
Confidence            2211 11 1224568999999876665 456899999987421  1122211111 1   12233467776665543   


Q ss_pred             -------CCeEEEEEcccceEEEEecCC----CCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          266 -------DSCVYLWELQSRKVVQKLEGH----TDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       266 -------dg~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                             .+.|..+|.. ++.+..+...    ...+.++++ .++.++++..  .++.|..+++++
T Consensus       252 ~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~--~~~~i~~~~~~~  313 (322)
T 2fp8_A          252 GNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTL--FHGSVGILVYDK  313 (322)
T ss_dssp             SSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECS--SCSEEEEEEC--
T ss_pred             ccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeec--CCCceEEEeccc
Confidence                   4668888864 6666555433    234677776 4566665543  346788887753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.05  E-value=5.2e-06  Score=76.90  Aligned_cols=271  Identities=11%  Similarity=0.112  Sum_probs=163.4

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      ...|.++...++|. |..|+.++.+..++.................  .....|.++...++|++. .|+.++-|..|+.
T Consensus       309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~--l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~  384 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNS--LSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNP  384 (795)
T ss_dssp             SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSS--CSCSSEEEEEECTTSCEE-EEESSSCEEEECT
T ss_pred             CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCC--CCCCeeEEEEECCCCCEE-EEECCCCeEEEcC
Confidence            35799999998887 4556667777777654321100000000001  124569999998888744 5777777999998


Q ss_pred             CCcceeeeee--------cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe----CCCCCeeEEEEccCCC
Q 020798          103 PTATCLKTLI--------GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP----AHSDPVTAVDFNRDGT  170 (321)
Q Consensus       103 ~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~----~~~~~v~~~~~~~~~~  170 (321)
                      .+++......        .....|.++...++++.|..|+.++-|..||.++++......    .....|.++...+++.
T Consensus       385 ~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~  464 (795)
T 4a2l_A          385 ITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN  464 (795)
T ss_dssp             TTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC
T ss_pred             CCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC
Confidence            7665432211        123568899888888746667776779999988776433221    1245688888888887


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeecc-----CCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec---cC
Q 020798          171 MIVTSSYDGLCRIWDASTGHCMKTLID-----DENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG---HT  242 (321)
Q Consensus       171 ~l~~~~~dg~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~  242 (321)
                      +.+. +.+| +..||..+++.......     .....+..+..+++|++.+. +. +-|..||..+++.  .+..   ..
T Consensus       465 lwig-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~-~Gl~~~~~~~~~~--~~~~~~~~~  538 (795)
T 4a2l_A          465 LWLG-TLSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GE-EGLSVFKQEGLDI--QKASILPVS  538 (795)
T ss_dssp             EEEE-ESSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ES-SCEEEEEEETTEE--EECCCSCSC
T ss_pred             EEEE-ecCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE-eC-CceEEEeCCCCeE--EEecCCCCC
Confidence            5554 4444 77899877654322111     11245788888888876554 44 4588899876654  3321   10


Q ss_pred             -CceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEE--ecC-CCCCeEEEEecCCCceEEEE
Q 020798          243 -NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK--LEG-HTDPVISVASHPTENIIASG  305 (321)
Q Consensus       243 -~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~-h~~~v~~~~~~p~~~~l~s~  305 (321)
                       .....+...+...+|.+.++. .. -|..||..+.+...-  ..+ ....|.++...++|++.+++
T Consensus       539 ~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          539 NVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             GGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred             CCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence             111123334444567655543 33 578889876654321  122 23568899999899887765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.03  E-value=2.6e-06  Score=67.85  Aligned_cols=225  Identities=10%  Similarity=0.014  Sum_probs=128.2

Q ss_pred             CEEEEEeCCCcEEEEecCCccee-----eeeecCcccEEEEEECCCCCEEEE-eeCCCcEEEEecCCCEEEEEEeCCCCC
Q 020798           86 RFLVSASDDKTIRLWDVPTATCL-----KTLIGHTNYVFCVNFNPQSNMIVS-GAFDETVRIWDVKTGKCLKVLPAHSDP  159 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~  159 (321)
                      ++|+.+.. +.|+.+++......     ..+......+..++++++++.|+. ....+.|..+++........+......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            44555443 47888887654321     111112235678999997666554 445789999998765443333333346


Q ss_pred             eeEEEEccCCCEEE-EEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec---CCeEEEEeCCCCcEE
Q 020798          160 VTAVDFNRDGTMIV-TSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL---DNTLRLWNYSTGKIL  235 (321)
Q Consensus       160 v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---d~~i~i~d~~~~~~~  235 (321)
                      ...+++.+++..++ +....+.|.++++.... ...+..........++++|++..|..+..   .+.|..+++.... .
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~  158 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-R  158 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-C
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-c
Confidence            78999999765554 45567889999986433 22222222234678999997666655553   3688888875432 2


Q ss_pred             EEEe-ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEE
Q 020798          236 KTYT-GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVK  314 (321)
Q Consensus       236 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~  314 (321)
                      ..+. .....  .....+.+..+.++++-...+.|.++|.........+.+... -.+++..  +..|..+..+ .+.|.
T Consensus       159 ~~~~~~~~~~--P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~-P~gi~~d--~~~lyva~~~-~~~v~  232 (267)
T 1npe_A          159 RILAQDNLGL--PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWK-TNSVI  232 (267)
T ss_dssp             EEEECTTCSC--EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETT-TTEEE
T ss_pred             EEEEECCCCC--CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCC-ceEEEEe--CCEEEEEECC-CCeEE
Confidence            2221 11111  122223322355566667788999999976544333333222 3566654  3344443333 46787


Q ss_pred             Ecccc
Q 020798          315 IWTQE  319 (321)
Q Consensus       315 iw~~~  319 (321)
                      .++.+
T Consensus       233 ~~d~~  237 (267)
T 1npe_A          233 AMDLA  237 (267)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            77764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.03  E-value=5.9e-08  Score=87.80  Aligned_cols=271  Identities=10%  Similarity=0.066  Sum_probs=147.1

Q ss_pred             EEEECC-CCCEEEEecCCc-----------eEEEeeccccCCCCCCCCCcccccc-cccccEEEEEECCCCCEEEEEeC-
Q 020798           28 SVKFSH-DGRLLASSSADK-----------TLLTYSLSSISNSDSTPPSPLQKFT-GHEQGVSDLVFSSDSRFLVSASD-   93 (321)
Q Consensus        28 ~~~~s~-~g~~l~~~~~d~-----------~v~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~~~~~-   93 (321)
                      ..++.| +|++++.|+.+.           .+.+||.....-      ..+..+. .+..-..++++..+++.++.|+. 
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w------~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~  263 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV------SDRTVTVTKHDMFCPGISMDGNGQIVVTGGND  263 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB------CCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE------EeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence            456667 888888876543           466777654221      1111111 12222345677889999998884 


Q ss_pred             CCcEEEEecCCcceeeeeecCcc-cEEEEEECCCCCEEEEee-CC-----CcEEEEecCCCEEEEE-----EeCCCCCee
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTN-YVFCVNFNPQSNMIVSGA-FD-----ETVRIWDVKTGKCLKV-----LPAHSDPVT  161 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~d-----g~i~~wd~~~~~~~~~-----~~~~~~~v~  161 (321)
                      +..+.+||..+.+....-.-+.. .-.+++..++++.++.|+ .+     ..+.+||..+++-...     .+..... .
T Consensus       264 ~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~  342 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-K  342 (656)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-T
T ss_pred             CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-c
Confidence            45899999887654322111111 112445667889888888 34     4689999987763322     0000000 0


Q ss_pred             EEEEccCCCEEEEEeCCC---------eEEEEeCCCCceeeeeccCC--------CCCeEEEEEc-cCCCEEEEEecCC-
Q 020798          162 AVDFNRDGTMIVTSSYDG---------LCRIWDASTGHCMKTLIDDE--------NPPVSFVKFS-PNGKFILVGTLDN-  222 (321)
Q Consensus       162 ~~~~~~~~~~l~~~~~dg---------~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~-~~g~~l~~~~~d~-  222 (321)
                      ...+..++..++.++.+|         .+..||..+...........        ...-..+.+. .++++++.|+.++ 
T Consensus       343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~  422 (656)
T 1k3i_A          343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY  422 (656)
T ss_dssp             TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred             cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence            112234455556665443         46778877654322111000        0112333443 3677788877532 


Q ss_pred             ----------eEEEEeCCCCcEEEEE--eccCCceeEEEeEEEecCCeEEEEeCCC-----------CeEEEEEcccceE
Q 020798          223 ----------TLRLWNYSTGKILKTY--TGHTNSKYCISSTFSVTNGKYIVSGSED-----------SCVYLWELQSRKV  279 (321)
Q Consensus       223 ----------~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----------g~i~vwd~~~~~~  279 (321)
                                .+.+||..+.......  .........  .....++++.++.|+.+           ..+.+||..+.+-
T Consensus       423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~--~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W  500 (656)
T 1k3i_A          423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH--TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF  500 (656)
T ss_dssp             SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC--EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred             CCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccC--CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce
Confidence                      6888888776644332  111111111  11223588999988754           4689999877653


Q ss_pred             EE--EecCCCCCeEEEEecCCCceEEEEee
Q 020798          280 VQ--KLEGHTDPVISVASHPTENIIASGAL  307 (321)
Q Consensus       280 ~~--~~~~h~~~v~~~~~~p~~~~l~s~~~  307 (321)
                      ..  .+......-....+.|++++++.||.
T Consensus       501 ~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          501 YKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            21  12111222234456789999999984

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.03  E-value=7.1e-07  Score=80.76  Aligned_cols=261  Identities=13%  Similarity=0.179  Sum_probs=151.5

Q ss_pred             CCEEEEecCCceEEEeeccccCCCCCCCC-CcccccccccccEEEEEECCCCCEEEEEeC------CCcEEEEecCCcce
Q 020798           35 GRLLASSSADKTLLTYSLSSISNSDSTPP-SPLQKFTGHEQGVSDLVFSSDSRFLVSASD------DKTIRLWDVPTATC  107 (321)
Q Consensus        35 g~~l~~~~~d~~v~~~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~  107 (321)
                      +..++.++.|+.+..+|..+......... .+..........+    + .++ .++++..      ++.|..+|..+++.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~  190 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPR----V-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKL  190 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCE----E-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence            45677778888888887654321100000 0000000000111    1 133 4444432      58899999999987


Q ss_pred             eeeeecC---c----------------------------ccEEEEEECCCCCEEEEeeCCC-------------------
Q 020798          108 LKTLIGH---T----------------------------NYVFCVNFNPQSNMIVSGAFDE-------------------  137 (321)
Q Consensus       108 ~~~~~~~---~----------------------------~~v~~~~~~~~~~~l~~~~~dg-------------------  137 (321)
                      +..+...   .                            .....++++|+.+.++.+..++                   
T Consensus       191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~  270 (668)
T 1kv9_A          191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (668)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            6654311   0                            0112367888888888777665                   


Q ss_pred             cEEEEecCCCEEEEEEeC--CC-------CCeeEEEEccCCC---EEEEEeCCCeEEEEeCCCCceeeeeccCC------
Q 020798          138 TVRIWDVKTGKCLKVLPA--HS-------DPVTAVDFNRDGT---MIVTSSYDGLCRIWDASTGHCMKTLIDDE------  199 (321)
Q Consensus       138 ~i~~wd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~------  199 (321)
                      .|..+|.++++.+-.++.  |.       .+.....+..+++   .++.++.+|.++++|..+++.+.......      
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  350 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence            399999999998776654  22       2222233334564   58888999999999999988763221100      


Q ss_pred             -----CCC------------------------eEEEEEccCCCEEEEEe-------------------------------
Q 020798          200 -----NPP------------------------VSFVKFSPNGKFILVGT-------------------------------  219 (321)
Q Consensus       200 -----~~~------------------------~~~~~~~~~g~~l~~~~-------------------------------  219 (321)
                           ..+                        -..++++|+...+++..                               
T Consensus       351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  430 (668)
T 1kv9_A          351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (668)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCC
Confidence                 000                        01256777766655421                               


Q ss_pred             -----cCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCe-EEE
Q 020798          220 -----LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV-ISV  293 (321)
Q Consensus       220 -----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v-~~~  293 (321)
                           .++.|..||+.+++.+-........ ..  .... ..+.+++.++.||.|+.||.++++.+.+++...... .-+
T Consensus       431 ~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~--~~~~-t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~  506 (668)
T 1kv9_A          431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHW-NG--GTLS-TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPM  506 (668)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESSSC-CC--CEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred             CCCCCccceEEEEeCCCCcEEEEccCCCCC-cC--ceeE-eCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCce
Confidence                 2378999999999987766543221 11  1111 246677888999999999999999988876543211 123


Q ss_pred             EecCCCc-eEEEE
Q 020798          294 ASHPTEN-IIASG  305 (321)
Q Consensus       294 ~~~p~~~-~l~s~  305 (321)
                      .+..+|+ +++.+
T Consensus       507 ~~~~~G~~yva~~  519 (668)
T 1kv9_A          507 TFELAGRQYVAIM  519 (668)
T ss_dssp             EEEETTEEEEEEE
T ss_pred             EEEECCEEEEEEE
Confidence            3344665 44444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.02  E-value=1.1e-07  Score=74.15  Aligned_cols=159  Identities=13%  Similarity=0.178  Sum_probs=110.1

Q ss_pred             EEEEEECCCCCEEEEEeCCC--cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEE-eeCCCcEEEEecCCCEEEEE
Q 020798           76 VSDLVFSSDSRFLVSASDDK--TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS-GAFDETVRIWDVKTGKCLKV  152 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~~~~  152 (321)
                      ...+.|+ ++.++.+++.+|  .|+++|+.+++.+..+.... ..+...+.++++.|.. ...++.+.+||.++.+.+..
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            3678888 666667777766  89999999999877765332 2333223334555544 44688999999999998888


Q ss_pred             EeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCC-C---CCeEEEEEccCCCEEEEEecCCeEEEEe
Q 020798          153 LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDE-N---PPVSFVKFSPNGKFILVGTLDNTLRLWN  228 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~---~~~~~~~~~~~g~~l~~~~~d~~i~i~d  228 (321)
                      ++....   ...+++++..|+.+..++.+.++|..+.+....+.... .   ..++.+.+. +|+..+..-.++.|.+.|
T Consensus       123 i~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID  198 (262)
T 3nol_A          123 FNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID  198 (262)
T ss_dssp             EECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred             EECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence            875332   22334567777777678899999999887776654321 1   224456665 676555444688999999


Q ss_pred             CCCCcEEEEEec
Q 020798          229 YSTGKILKTYTG  240 (321)
Q Consensus       229 ~~~~~~~~~~~~  240 (321)
                      ..+++.+..+..
T Consensus       199 p~tG~V~~~Id~  210 (262)
T 3nol_A          199 PETGKVTGIIDL  210 (262)
T ss_dssp             TTTCBEEEEEEC
T ss_pred             CCCCcEEEEEEC
Confidence            999999988864

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.99  E-value=7.3e-06  Score=75.93  Aligned_cols=277  Identities=15%  Similarity=0.184  Sum_probs=163.5

Q ss_pred             EEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 020798           26 ISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA  105 (321)
Q Consensus        26 v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  105 (321)
                      |.++...++|++.+ ++.++.+..|+.......      ... ...+...|.++...+++.+.+ |+.++-+..||..++
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~------~~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~  245 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFE------KVI-PILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTK  245 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEE------ECC-----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTT
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEE------Eec-CCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCC
Confidence            78888888876554 555545777765331100      000 011245688888877777555 444444888998776


Q ss_pred             ceeeeeec-------CcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeC-------CCCCeeEEEEccCCCE
Q 020798          106 TCLKTLIG-------HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPA-------HSDPVTAVDFNRDGTM  171 (321)
Q Consensus       106 ~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~  171 (321)
                      +.......       ....|.++...++|...+ |..+ -|.+||..+++.......       ....|.++...++|.+
T Consensus       246 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l  323 (795)
T 4a2l_A          246 EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM  323 (795)
T ss_dssp             EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE
T ss_pred             eEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE
Confidence            54322111       235689999988887554 4444 588899877764432211       2356889988888864


Q ss_pred             EEEEeCCCeEEEEeCCCCceeeeec-----cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc-----
Q 020798          172 IVTSSYDGLCRIWDASTGHCMKTLI-----DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH-----  241 (321)
Q Consensus       172 l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----  241 (321)
                       -.|+.++-+..++..+........     .-....|.++..+++|.+ .+|+.++-|..||..+++........     
T Consensus       324 -Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~  401 (795)
T 4a2l_A          324 -WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESAR  401 (795)
T ss_dssp             -EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC------
T ss_pred             -EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCccc
Confidence             456666668888865543211110     012345788888888874 45777777999998776543322111     


Q ss_pred             CCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec----CCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE----GHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ......+...+...++..|..|+.++-|..||..+++......    .+...|.++...+++++.+...   + -+.+|+
T Consensus       402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~---~-Gl~~~~  477 (795)
T 4a2l_A          402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL---S-ALVRFN  477 (795)
T ss_dssp             CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES---S-CEEEEE
T ss_pred             CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec---C-ceeEEe
Confidence            0011123334444567635567776779999988765433211    1345789999988888766542   2 366666


Q ss_pred             cc
Q 020798          318 QE  319 (321)
Q Consensus       318 ~~  319 (321)
                      .+
T Consensus       478 ~~  479 (795)
T 4a2l_A          478 PE  479 (795)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.99  E-value=1.4e-07  Score=85.39  Aligned_cols=231  Identities=11%  Similarity=0.140  Sum_probs=141.1

Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeeecCcc-cEEEEEECC--CCCEEEEeeC------CCcEEEEecCCCEEEEEEeC
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHTN-YVFCVNFNP--QSNMIVSGAF------DETVRIWDVKTGKCLKVLPA  155 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~  155 (321)
                      +..++.++.|+.|..+|..+++.+........ ....+...|  .+..++.+..      +|.|+.+|.++++.+-.+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            45678888999999999999987665543110 000011111  1345555543      58999999999988766542


Q ss_pred             CC-C------------------------------CeeEEEEccCCCEEEEEeCCC-------------------eEEEEe
Q 020798          156 HS-D------------------------------PVTAVDFNRDGTMIVTSSYDG-------------------LCRIWD  185 (321)
Q Consensus       156 ~~-~------------------------------~v~~~~~~~~~~~l~~~~~dg-------------------~i~~~d  185 (321)
                      .. .                              ....+++.|+...++.+..++                   .|..+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence            10 0                              112467888888888887665                   389999


Q ss_pred             CCCCceeeeeccC-CC-------CCeEEEEEccCCC---EEEEEecCCeEEEEeCCCCcEEEEEeccCCc-eeEE-----
Q 020798          186 ASTGHCMKTLIDD-EN-------PPVSFVKFSPNGK---FILVGTLDNTLRLWNYSTGKILKTYTGHTNS-KYCI-----  248 (321)
Q Consensus       186 ~~~~~~~~~~~~~-~~-------~~~~~~~~~~~g~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~-----  248 (321)
                      .++++..-..... +.       .+.....+..+|+   .++.++.+|.+.++|..+++++........+ ...+     
T Consensus       277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g  356 (668)
T 1kv9_A          277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (668)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence            9999876554322 11       2222233334665   6888899999999999999988544321100 0000     


Q ss_pred             ----------------------------EeEEEecCCeEEEE------------------------------------eC
Q 020798          249 ----------------------------SSTFSVTNGKYIVS------------------------------------GS  264 (321)
Q Consensus       249 ----------------------------~~~~~~~~~~~l~~------------------------------------~~  264 (321)
                                                  ...+. ++...+..                                    ..
T Consensus       357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~d-p~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFN-PGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEE-TTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CccccccccccCCeeEECCCCccccCCCcceEC-CCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence                                        01111 22222221                                    12


Q ss_pred             CCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          265 EDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       265 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      .+|.|..||+.+++.+.+...+ .+.........+.++..|+  .++.++.||.+
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~--~dg~l~a~d~~  487 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGT--AAGQMHAYSAD  487 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEEC--TTSEEEEEETT
T ss_pred             ccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEEC--Ccccchhhhhh
Confidence            3488999999999988776643 2344444445677777775  56899999875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.98  E-value=6.7e-06  Score=66.95  Aligned_cols=224  Identities=13%  Similarity=0.034  Sum_probs=131.9

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCC--CcEEEEecCCCEEEE
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD--ETVRIWDVKTGKCLK  151 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~  151 (321)
                      .....++|+++++++++-..++.|..||..... ...+ ........+++.++++.+++....  ..|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            346789999999977776678899999976542 2222 233467889999999866654332  247777777776543


Q ss_pred             EEeCC-CCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce-eee--------eccCCCCCeEEEEEccCCCEEEEEe-c
Q 020798          152 VLPAH-SDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC-MKT--------LIDDENPPVSFVKFSPNGKFILVGT-L  220 (321)
Q Consensus       152 ~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~--------~~~~~~~~~~~~~~~~~g~~l~~~~-~  220 (321)
                      ..... ......++..+++..+++...++.|..+|..++.. +..        .....-.....+  +++++.|.++. .
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            33221 12234455555554455544688999999865421 110        000111233445  78887766654 5


Q ss_pred             CCeEEEEeCCC-CcE--EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceE--EEEecCCCCCeEEEEe
Q 020798          221 DNTLRLWNYST-GKI--LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV--VQKLEGHTDPVISVAS  295 (321)
Q Consensus       221 d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~  295 (321)
                      .+.|..|++.. ++.  ...+.....+ ..   ....++|.++++....+.|.+++.. ++.  +..+.......++++|
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~~~~~P-~g---i~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~  262 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFVEQTNI-DD---FAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAF  262 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEESCCC-SS---EEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEE
T ss_pred             CCEEEEEEeCCCCCCCccEEEeccCCC-CC---eEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEE
Confidence            67899999864 321  1111111111 11   2223678877777778899999975 544  2233333356799999


Q ss_pred             c---CCCceEEEEe
Q 020798          296 H---PTENIIASGA  306 (321)
Q Consensus       296 ~---p~~~~l~s~~  306 (321)
                      .   |+++.|..+.
T Consensus       263 ~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          263 GQTEGDCTAIYVVT  276 (306)
T ss_dssp             CCSTTTTTEEEEEE
T ss_pred             ecccCCCCEEEEEC
Confidence            8   8866554443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.97  E-value=7.3e-07  Score=69.66  Aligned_cols=157  Identities=10%  Similarity=0.041  Sum_probs=110.9

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEE--EEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE
Q 020798           76 VSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVF--CVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL  153 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  153 (321)
                      ...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ - ....+  .+++.. +..+.....++.+.+||.++.+.+..+
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            3577786 3566678888899999999999887776 2 22333  355543 234445567889999999999999888


Q ss_pred             eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCC----CCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDEN----PPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                      +.... -..++  +++..|+.+..++.+.++|..+.+....+.....    ..++.+.|. +|+..+....++.|.+.|.
T Consensus       133 ~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          133 RYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP  208 (268)
T ss_dssp             ECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred             eCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence            75332 23444  5677888777799999999999887766543221    134556665 6765544446789999999


Q ss_pred             CCCcEEEEEec
Q 020798          230 STGKILKTYTG  240 (321)
Q Consensus       230 ~~~~~~~~~~~  240 (321)
                      .+++.+..+..
T Consensus       209 ~TG~V~~~Idl  219 (268)
T 3nok_A          209 ATGTVVGVIDA  219 (268)
T ss_dssp             TTCBEEEEEEC
T ss_pred             CCCcEEEEEEC
Confidence            99999988864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.96  E-value=2.8e-07  Score=80.27  Aligned_cols=186  Identities=13%  Similarity=0.113  Sum_probs=123.5

Q ss_pred             CCCEEEEee-CCCcEEEEecCCCEEEEEEeCC-CCCeeEEEE-c-cCCCEEEEEe------------------CCCeEEE
Q 020798          126 QSNMIVSGA-FDETVRIWDVKTGKCLKVLPAH-SDPVTAVDF-N-RDGTMIVTSS------------------YDGLCRI  183 (321)
Q Consensus       126 ~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~~  183 (321)
                      ||++++.+. .+..|.+.|+.+.++...+... ......+++ . |+++++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            777776655 4567999999999987744432 245778887 4 8999888874                  3457899


Q ss_pred             EeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCC--------------------------------------eEE
Q 020798          184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN--------------------------------------TLR  225 (321)
Q Consensus       184 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~--------------------------------------~i~  225 (321)
                      .|..+.+...++....+  ...++++|+|+++++.+.+.                                      .+.
T Consensus       180 ID~~t~~v~~qI~Vgg~--pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGN--LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EETTTTEEEEEEEESSC--CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EECCCCeEEEEEEeCCC--ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99998877776654332  35678999999999887543                                      366


Q ss_pred             EEeCCC--CcE-EEEEeccCCceeEEEeEEEecCCeEEE-EeCCCCeEEEEEcccce------------EEEEecCCCCC
Q 020798          226 LWNYST--GKI-LKTYTGHTNSKYCISSTFSVTNGKYIV-SGSEDSCVYLWELQSRK------------VVQKLEGHTDP  289 (321)
Q Consensus       226 i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~------------~~~~~~~h~~~  289 (321)
                      +.|.++  ++. +..+.....+. ++   ...|||++++ ++..+.+|.++|+.+.+            .+..+..- ..
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~Ph-Gv---~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG-~g  332 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPH-GC---NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-LG  332 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCC-CE---EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC-SC
T ss_pred             EEeCcccCCceeEEEEecCCCce-EE---EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC-CC
Confidence            666665  333 33443222211 12   2347887655 45578899999998653            33444322 34


Q ss_pred             eEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          290 VISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       290 v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      -+.++|+|+|...++.-  -++.|..|+.++
T Consensus       333 P~h~aF~~dG~aY~t~~--ldsqV~kwdi~~  361 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLF--LDSQVVKWNIED  361 (595)
T ss_dssp             EEEEEECTTSEEEEEET--TTTEEEEEEHHH
T ss_pred             cceEEECCCCeEEEEEe--cCCcEEEEEhhH
Confidence            58999999994444443  347899999864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.95  E-value=1.2e-06  Score=77.62  Aligned_cols=259  Identities=12%  Similarity=0.120  Sum_probs=149.4

Q ss_pred             CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccc--cEEE-EEECCCCCEEEEEeC------CCcEEEEecCCc
Q 020798           35 GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQ--GVSD-LVFSSDSRFLVSASD------DKTIRLWDVPTA  105 (321)
Q Consensus        35 g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~  105 (321)
                      +..++.++.|+.+..+|..+......      .....+..  .+.+ ... .++ .++.++.      ++.|..+|..++
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~------~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG  186 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWE------VEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTG  186 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEE------EECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEE------ecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCC
Confidence            45677777788888877643221100      00011100  1110 011 134 4555544      789999999998


Q ss_pred             ceeeeeecCccc--------------------------------------EEEEEECCCCCEEEEeeCC-----------
Q 020798          106 TCLKTLIGHTNY--------------------------------------VFCVNFNPQSNMIVSGAFD-----------  136 (321)
Q Consensus       106 ~~~~~~~~~~~~--------------------------------------v~~~~~~~~~~~l~~~~~d-----------  136 (321)
                      +.+..+......                                      ...+++.++...++.+..+           
T Consensus       187 ~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~g  266 (571)
T 2ad6_A          187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPG  266 (571)
T ss_dssp             CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCS
T ss_pred             cEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCC
Confidence            876554321100                                      0124566666666655432           


Q ss_pred             -----CcEEEEecCCCEEEEEEeCC--C--------CCeeEEEEccCCC---EEEEEeCCCeEEEEeCCCCceeeeeccC
Q 020798          137 -----ETVRIWDVKTGKCLKVLPAH--S--------DPVTAVDFNRDGT---MIVTSSYDGLCRIWDASTGHCMKTLIDD  198 (321)
Q Consensus       137 -----g~i~~wd~~~~~~~~~~~~~--~--------~~v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~  198 (321)
                           +.|..+|.++++.+-.++..  .        .++ -+...++|+   .++.++.+|.+.++|..+++.+......
T Consensus       267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~  345 (571)
T 2ad6_A          267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVD  345 (571)
T ss_dssp             CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred             CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeeccc
Confidence                 35899999999877666532  1        222 122234664   5677889999999999998766443211


Q ss_pred             C------------CCCe--------------------------EEEEEccCCCEEEEEe---------------------
Q 020798          199 E------------NPPV--------------------------SFVKFSPNGKFILVGT---------------------  219 (321)
Q Consensus       199 ~------------~~~~--------------------------~~~~~~~~g~~l~~~~---------------------  219 (321)
                      .            ..++                          ..++++|+...+++..                     
T Consensus       346 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~  425 (571)
T 2ad6_A          346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV  425 (571)
T ss_dssp             TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred             CCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccc
Confidence            1            0011                          2356788777776653                     


Q ss_pred             ----------------cCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEe
Q 020798          220 ----------------LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       220 ----------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                                      .++.|..||+.+++.+-.+...... ..  .... ..+..++.++.||.|+.||.++++.+.++
T Consensus       426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~-~~--~~~~-t~gg~v~~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAA-WG--GTLY-TKGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCC-CS--BCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCc-cc--eeEE-ECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence                            2478999999999987776532211 11  1111 23455666899999999999999999887


Q ss_pred             cCCCCC-eEEEEecCCCceEEEEe
Q 020798          284 EGHTDP-VISVASHPTENIIASGA  306 (321)
Q Consensus       284 ~~h~~~-v~~~~~~p~~~~l~s~~  306 (321)
                      +..... -.-+.+..+++.++...
T Consensus       502 ~~~~~~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          502 KMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             ECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             eCCCCcEeeeEEEEECCEEEEEEE
Confidence            643211 12233556777666543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.94  E-value=4.8e-06  Score=67.85  Aligned_cols=209  Identities=9%  Similarity=0.105  Sum_probs=122.1

Q ss_pred             CcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE
Q 020798           11 RPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~   90 (321)
                      .+.++...+... .....++|+|+|+++++-..++.|..++....         ....+ .-...+..+++.++|+++++
T Consensus        20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---------~~~~~-~~~~~p~gia~~~dG~l~va   88 (306)
T 2p4o_A           20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHA-TVEGKVSGLAFTSNGDLVAT   88 (306)
T ss_dssp             CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEE-ECSSEEEEEEECTTSCEEEE
T ss_pred             CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---------eEEEE-eCCCCceeEEEcCCCcEEEE
Confidence            344455555432 45678999999997777767888888865321         11111 11245788999999996665


Q ss_pred             EeCCC--cEEEEecCCcceeeeee-cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEE-EEEEe---------CCC
Q 020798           91 ASDDK--TIRLWDVPTATCLKTLI-GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKC-LKVLP---------AHS  157 (321)
Q Consensus        91 ~~~d~--~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~---------~~~  157 (321)
                      .....  .|..++..+++...... ........++..+++..+++...++.|+++|...++. +....         ..-
T Consensus        89 d~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~  168 (306)
T 2p4o_A           89 GWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  168 (306)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             eccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence            54332  46667777766432211 1122234455555554455544688999999876531 11110         011


Q ss_pred             CCeeEEEEccCCCEEEE-EeCCCeEEEEeCCC-Cce--eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc
Q 020798          158 DPVTAVDFNRDGTMIVT-SSYDGLCRIWDAST-GHC--MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK  233 (321)
Q Consensus       158 ~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~  233 (321)
                      .....+  +|+++.++. -...+.|..+|+.. +..  ...+...  .....++++++|+++++....+.|.++|.. ++
T Consensus       169 ~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~  243 (306)
T 2p4o_A          169 PAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS  243 (306)
T ss_dssp             CSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC
T ss_pred             CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC
Confidence            123444  778775554 45678999999864 321  1111111  224568899999877766667889999965 65


Q ss_pred             EE
Q 020798          234 IL  235 (321)
Q Consensus       234 ~~  235 (321)
                      ..
T Consensus       244 ~~  245 (306)
T 2p4o_A          244 TT  245 (306)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.91  E-value=2e-06  Score=73.58  Aligned_cols=240  Identities=13%  Similarity=0.170  Sum_probs=136.4

Q ss_pred             cEEEEEECC-CCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-CC----cEEEEecCCCE
Q 020798           75 GVSDLVFSS-DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-DE----TVRIWDVKTGK  148 (321)
Q Consensus        75 ~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~~wd~~~~~  148 (321)
                      ....|+++| ++..|+.+...+.|+.+|+..+... .+.........++++++++.|+.+.. .+    .+.+++....-
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            456889998 4555665555478999998876543 33334455789999999996665554 22    23334432211


Q ss_pred             E-EEEEeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEE
Q 020798          149 C-LKVLPAHSDPVTAVDFNR-DGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLR  225 (321)
Q Consensus       149 ~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~  225 (321)
                      . ...+.. ......++++| ++.++++-..++.|..++...+................++++|+|++|..+. ..+.|.
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            0 122221 23346788999 6776666667889999998866542222222223457899999999655554 567899


Q ss_pred             EEeCCC--CcE--EEEEecc---CCc---------eeEEE-eEEEe--------cCCeEEEEeCCCCeEEEEEcccceEE
Q 020798          226 LWNYST--GKI--LKTYTGH---TNS---------KYCIS-STFSV--------TNGKYIVSGSEDSCVYLWELQSRKVV  280 (321)
Q Consensus       226 i~d~~~--~~~--~~~~~~~---~~~---------~~~~~-~~~~~--------~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (321)
                      .++...  ++.  +..+.+.   .+.         ..... ..+..        .++.++++-...+.|+.++. .++..
T Consensus       296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~  374 (430)
T 3tc9_A          296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVT  374 (430)
T ss_dssp             EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEE
T ss_pred             EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEE
Confidence            987643  221  1222211   000         00011 12221        23566666566778888883 44432


Q ss_pred             EEec-------C----------CCCCeEEEEecCC-CceEEEEeecCCccEEEcccc
Q 020798          281 QKLE-------G----------HTDPVISVASHPT-ENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       281 ~~~~-------~----------h~~~v~~~~~~p~-~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ....       +          .-..-..+++.|+ +.++++-.  .+.+|+..+.|
T Consensus       375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~--~n~rIr~i~~e  429 (430)
T 3tc9_A          375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDR--ENRRIRKIGYE  429 (430)
T ss_dssp             EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG--GGTEEEEEEEC
T ss_pred             EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEEC--CCCeEEEEccC
Confidence            2211       1          0113589999995 66665533  34678888776

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.90  E-value=2.4e-06  Score=75.87  Aligned_cols=163  Identities=16%  Similarity=0.222  Sum_probs=101.0

Q ss_pred             CcEEEEecCCCEEEEEEeC--CC--------CCeeEEEEc-cCCC---EEEEEeCCCeEEEEeCCCCceeeeeccCC---
Q 020798          137 ETVRIWDVKTGKCLKVLPA--HS--------DPVTAVDFN-RDGT---MIVTSSYDGLCRIWDASTGHCMKTLIDDE---  199 (321)
Q Consensus       137 g~i~~wd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---  199 (321)
                      +.|..+|.++++.+-.++.  |.        .++. +... .+|+   .++.++.+|.++++|.++++.+.......   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            5799999999988766643  21        1221 2221 4563   67788999999999999887654332111   


Q ss_pred             ---------CCC--------------------------------eEEEEEccCCCEEEEEe-------------------
Q 020798          200 ---------NPP--------------------------------VSFVKFSPNGKFILVGT-------------------  219 (321)
Q Consensus       200 ---------~~~--------------------------------~~~~~~~~~g~~l~~~~-------------------  219 (321)
                               ..+                                -..++++|+...+++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                     000                                01245666554444432                   


Q ss_pred             --------------cCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC
Q 020798          220 --------------LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG  285 (321)
Q Consensus       220 --------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  285 (321)
                                    .++.|..||+.+++.+-+....... ..  .... ..+.+++.|+.||.++.||.++++.+.+++.
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~-~~--g~~~-tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL-WA--GVLA-TAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC-CS--CCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC-cc--cceE-eCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence                          2578999999999987666533211 10  0111 2355677799999999999999999988875


Q ss_pred             CCCCe-EEEEecCCCceEEE
Q 020798          286 HTDPV-ISVASHPTENIIAS  304 (321)
Q Consensus       286 h~~~v-~~~~~~p~~~~l~s  304 (321)
                      ....+ .-+.+..+|+..++
T Consensus       526 ~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          526 GSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             SSCCCSCCEEEEETTEEEEE
T ss_pred             CCCcccCceEEEECCEEEEE
Confidence            43221 12556678875444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.89  E-value=1.8e-06  Score=66.82  Aligned_cols=157  Identities=13%  Similarity=0.092  Sum_probs=107.9

Q ss_pred             EEEEEECCCCCEEEEEeCCC--cEEEEecCCcceeeeeecCccc-EEEEEECCCCCEE-EEeeCCCcEEEEecCCCEEEE
Q 020798           76 VSDLVFSSDSRFLVSASDDK--TIRLWDVPTATCLKTLIGHTNY-VFCVNFNPQSNMI-VSGAFDETVRIWDVKTGKCLK  151 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~  151 (321)
                      ...+.|++ +.++.+.+.+|  .|+.+|+.+++.+..+...... --.+++.  ++.| .....++.+.+||.++.+.+.
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~   99 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRA   99 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEE
Confidence            55788886 56666666654  8999999999987766432221 1233333  4444 445578899999999999998


Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCC----CCeEEEEEccCCCEEEEEecCCeEEEE
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDEN----PPVSFVKFSPNGKFILVGTLDNTLRLW  227 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~~~~~d~~i~i~  227 (321)
                      .++..... ..++  +++..|+.+..++.|.++|..+.+...++.....    ..++.+.+. +|+.++..-.+..|.+.
T Consensus       100 ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vI  175 (243)
T 3mbr_X          100 RFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARI  175 (243)
T ss_dssp             EEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEE
Confidence            88754322 3444  5677777777789999999998877666543211    234455554 66655444467899999


Q ss_pred             eCCCCcEEEEEe
Q 020798          228 NYSTGKILKTYT  239 (321)
Q Consensus       228 d~~~~~~~~~~~  239 (321)
                      |.++++.+..+.
T Consensus       176 Dp~tG~V~~~id  187 (243)
T 3mbr_X          176 DPASGKVVAWID  187 (243)
T ss_dssp             CTTTCBEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            999999998886

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.87  E-value=2.6e-06  Score=75.67  Aligned_cols=206  Identities=15%  Similarity=0.185  Sum_probs=125.4

Q ss_pred             CCCcEEEEecCCcceeeeeecCccc-------------------------------------E-EEEEECCCCCEEEEee
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNY-------------------------------------V-FCVNFNPQSNMIVSGA  134 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~  134 (321)
                      .++.|+.+|..+++.+-.+......                                     + ...++.++.+.++.+.
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3789999999999876544321110                                     0 1345566777777665


Q ss_pred             CC----------------CcEEEEecCCCEEEEEEeCCC----------CCeeEEEEc-cCC---CEEEEEeCCCeEEEE
Q 020798          135 FD----------------ETVRIWDVKTGKCLKVLPAHS----------DPVTAVDFN-RDG---TMIVTSSYDGLCRIW  184 (321)
Q Consensus       135 ~d----------------g~i~~wd~~~~~~~~~~~~~~----------~~v~~~~~~-~~~---~~l~~~~~dg~i~~~  184 (321)
                      .+                +.|..+|.++++.+-.++...          .++. +... .+|   ..++.++.+|.+.++
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l  338 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL  338 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence            54                379999999998876655322          1221 2222 456   457778899999999


Q ss_pred             eCCCCceeeeeccCC------------CCCe--------------------------EEEEEccCCCEEEEEe-------
Q 020798          185 DASTGHCMKTLIDDE------------NPPV--------------------------SFVKFSPNGKFILVGT-------  219 (321)
Q Consensus       185 d~~~~~~~~~~~~~~------------~~~~--------------------------~~~~~~~~g~~l~~~~-------  219 (321)
                      |.++++.+.......            ..++                          ..++++|+..++++..       
T Consensus       339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~  418 (599)
T 1w6s_A          339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW  418 (599)
T ss_dssp             ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred             ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence            999988664432110            0000                          1345666655554421       


Q ss_pred             --------------------------------cCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC
Q 020798          220 --------------------------------LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS  267 (321)
Q Consensus       220 --------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  267 (321)
                                                      ..+.|..||+.+++.+-....... ..  ..... ..+.+++.++.||
T Consensus       419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~--~g~~~-tagg~vf~gt~dg  494 (599)
T 1w6s_A          419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA-VW--GGTMA-TAGDLVFYGTLDG  494 (599)
T ss_dssp             EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC-CC--SBCEE-ETTTEEEEECTTS
T ss_pred             ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC-cc--CcceE-ecCCEEEEECCCC
Confidence                                            346899999999988776642211 11  00011 2355666789999


Q ss_pred             eEEEEEcccceEEEEecCCCCCe-EEEEecCCCceEE
Q 020798          268 CVYLWELQSRKVVQKLEGHTDPV-ISVASHPTENIIA  303 (321)
Q Consensus       268 ~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~p~~~~l~  303 (321)
                      .++.||.++++.+.+++.....+ .-+.+..+|+..+
T Consensus       495 ~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv  531 (599)
T 1w6s_A          495 YLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (599)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             eEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence            99999999999998876433211 2244556776433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.85  E-value=2.5e-05  Score=64.87  Aligned_cols=206  Identities=6%  Similarity=-0.063  Sum_probs=124.4

Q ss_pred             ccEEEEEECCCCCEEE-EEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEE-EEeeCCCcEEEEecCCCEEEE
Q 020798           74 QGVSDLVFSSDSRFLV-SASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVKTGKCLK  151 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~  151 (321)
                      ..+..++|++.+..|+ +-...+.|..+++........+.........+++.+.++.| ++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            3478899997655554 55567889999987665333222222345678888765554 555566789999986543333


Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEE-eCC-CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEe
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTS-SYD-GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWN  228 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d  228 (321)
                      .+...-.....+++.|.+..++.+ ... +.|..+++.... ...+..........++++|++..|..+. ..+.|..+|
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            333333556889999866555544 444 778888876432 2233222233467899998776666654 467899999


Q ss_pred             CCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec
Q 020798          229 YSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE  284 (321)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  284 (321)
                      +........+.........++.    .++..+.+-...+.|..++..+++....+.
T Consensus       232 ~dG~~~~~~~~~~~~~P~giav----~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          232 LDGSHRKAVISQGLPHPFAITV----FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEE----ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCceEEEEeCCCCCceEEEE----ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            7654333333222222233332    356677777778888888865555444443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.82  E-value=3.2e-05  Score=71.45  Aligned_cols=274  Identities=9%  Similarity=0.100  Sum_probs=159.0

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCc-ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSP-LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      ...|.++...++|. |..|+.++.|..++.............. ...-......|.++...++|++. .|+.++-|..|+
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~  389 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFE  389 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEE
Confidence            45789999988886 5566666677777654211100000000 00001123568999998888744 566556688898


Q ss_pred             cCCcceeeee---ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe--CCCCCeeEEEEccCCCEEEEEe
Q 020798          102 VPTATCLKTL---IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP--AHSDPVTAVDFNRDGTMIVTSS  176 (321)
Q Consensus       102 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~  176 (321)
                      ..++......   ......|.++...++++..+ |..++-+..+|.++++......  .....|.++...+++.+. .++
T Consensus       390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt  467 (781)
T 3v9f_A          390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGT  467 (781)
T ss_dssp             TTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEE
T ss_pred             CCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEE
Confidence            7655322111   12345688888888776544 6666678889987775433221  234578888888777644 455


Q ss_pred             CCCeEEEEeCCCCceeeeeccC----CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccC-CceeEEEeE
Q 020798          177 YDGLCRIWDASTGHCMKTLIDD----ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT-NSKYCISST  251 (321)
Q Consensus       177 ~dg~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~  251 (321)
                      . +-+..+|..+++........    ....+..+...++|.+.+ |+.++-|..||..+++. ..+.... -+...+...
T Consensus       468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i  544 (781)
T 3v9f_A          468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQI  544 (781)
T ss_dssp             T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEE
T ss_pred             C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEE
Confidence            5 45788888765433221111    124578888888887554 55544488898766543 3343211 111223334


Q ss_pred             EEecCCeEEEEeCCCCeEEEEEcccceEEEEec---C-CCCCeEEEEecCCCceEEEE
Q 020798          252 FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE---G-HTDPVISVASHPTENIIASG  305 (321)
Q Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~-h~~~v~~~~~~p~~~~l~s~  305 (321)
                      +...+|.+.++ +.+|.|..||..+++.. .+.   + ....|.++...++|++.+++
T Consensus       545 ~~d~~g~lWi~-T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          545 YRSSKGQMWLA-TGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAST  600 (781)
T ss_dssp             EECTTSCEEEE-ETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred             EECCCCCEEEE-ECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEEc
Confidence            44456665554 44666588887765432 222   2 23468889888888887765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.80  E-value=1e-06  Score=79.75  Aligned_cols=243  Identities=11%  Similarity=0.120  Sum_probs=135.8

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------cEEEEecCCcceee--eee-cCcccEEEEEECCCCCEEEEeeC-CCcEEE
Q 020798           78 DLVFSS-DSRFLVSASDDK-----------TIRLWDVPTATCLK--TLI-GHTNYVFCVNFNPQSNMIVSGAF-DETVRI  141 (321)
Q Consensus        78 ~~~~~~-~~~~l~~~~~d~-----------~i~iwd~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~  141 (321)
                      ..++.+ +++.++.|+.+.           .+.+||..+++...  .+. .+.....++++.+++..++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            455666 888888887543           58889988775322  221 12233335677888999998884 458999


Q ss_pred             EecCCCEEEEEEeCCCCC-eeEEEEccCCCEEEEEe-CC-----CeEEEEeCCCCceeeeec---cCCCCCeEEEEEccC
Q 020798          142 WDVKTGKCLKVLPAHSDP-VTAVDFNRDGTMIVTSS-YD-----GLCRIWDASTGHCMKTLI---DDENPPVSFVKFSPN  211 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-~d-----g~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~  211 (321)
                      ||..+++-...-..+... -.+++..+++++++.|+ .+     ..+.+||..+..-...-.   ......-....+..+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~  349 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  349 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence            999877533321112111 23456667899988888 34     468899988764322100   000000000112234


Q ss_pred             CCEEEEEecC---------CeEEEEeCCCCcEEEEEeccCC-------ceeEEEeEEEecCCeEEEEeCCCC--------
Q 020798          212 GKFILVGTLD---------NTLRLWNYSTGKILKTYTGHTN-------SKYCISSTFSVTNGKYIVSGSEDS--------  267 (321)
Q Consensus       212 g~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~dg--------  267 (321)
                      +..++.++.+         ..+..||..+............       ........+...++++++.|+.++        
T Consensus       350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~  429 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT  429 (656)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred             CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence            4444555443         4578888877654432221110       011122223234788888888543        


Q ss_pred             ---eEEEEEcccceEEEEe--cCCCCCe-EEEEecCCCceEEEEeecCC---------ccEEEccccc
Q 020798          268 ---CVYLWELQSRKVVQKL--EGHTDPV-ISVASHPTENIIASGALDND---------RTVKIWTQEK  320 (321)
Q Consensus       268 ---~i~vwd~~~~~~~~~~--~~h~~~v-~~~~~~p~~~~l~s~~~d~~---------~~i~iw~~~~  320 (321)
                         .|.+||..+..-....  .-+.... .+.+..|++++++.|+.+..         ..+.+||.+.
T Consensus       430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t  497 (656)
T 1k3i_A          430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ  497 (656)
T ss_dssp             CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred             cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence               6778887765433222  1122222 34566789999999986421         4588888753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.79  E-value=1.1e-05  Score=68.92  Aligned_cols=239  Identities=13%  Similarity=0.154  Sum_probs=135.8

Q ss_pred             cEEEEEECCC--CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCC---C-cEEEEecCCCE
Q 020798           75 GVSDLVFSSD--SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD---E-TVRIWDVKTGK  148 (321)
Q Consensus        75 ~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-~i~~wd~~~~~  148 (321)
                      ....++|+|+  +..|+.+...+.|+.+|..+++.. .+.........++++++++.+++....   . .+...+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4568999984  334444433388999998777643 333344557899999999944443311   1 13333322111


Q ss_pred             E-EEEEeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeeecc-CCCCCeEEEEEccCCCEEEEEe-cCCeE
Q 020798          149 C-LKVLPAHSDPVTAVDFNR-DGTMIVTSSYDGLCRIWDASTGHCMKTLID-DENPPVSFVKFSPNGKFILVGT-LDNTL  224 (321)
Q Consensus       149 ~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~-~d~~i  224 (321)
                      . ...+. .......++++| ++.++++-..++.|+.+|..++.....+.. ........++++|+|++|..+. ..+.|
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            0 01121 123346688999 676666666778999999886654222221 1222234699999999665554 56789


Q ss_pred             EEEeCC--CCcE--EEEEecc---CC----------ceeEEEeEEE--------ecCCeEEEEeCCCCeEEEEEcccceE
Q 020798          225 RLWNYS--TGKI--LKTYTGH---TN----------SKYCISSTFS--------VTNGKYIVSGSEDSCVYLWELQSRKV  279 (321)
Q Consensus       225 ~i~d~~--~~~~--~~~~~~~---~~----------~~~~~~~~~~--------~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (321)
                      ..++..  ++..  ...+.+.   .+          ........+.        ..++.++++-...+.|+.++. .+..
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v  376 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV  376 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence            998764  2321  1122221   00          0001112221        355677777777888999885 4433


Q ss_pred             EEEecCC------------------CCCeEEEEec-CCCceEEEEeecCCccEEEcccc
Q 020798          280 VQKLEGH------------------TDPVISVASH-PTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       280 ~~~~~~h------------------~~~v~~~~~~-p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      . .+.+.                  -..-.+|++. +++.++++=.  .+.+|+..++|
T Consensus       377 ~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~--~n~rIr~i~~e  432 (433)
T 4hw6_A          377 T-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC--DNHRVRKIAPE  432 (433)
T ss_dssp             E-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG--GGTEEEEEEEC
T ss_pred             E-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC--CCCEEEEEecC
Confidence            2 22211                  1235789999 6677666543  35688888876

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.79  E-value=2.5e-06  Score=78.41  Aligned_cols=194  Identities=10%  Similarity=0.066  Sum_probs=109.2

Q ss_pred             cEEEEEEC-CCCCEEEEEeC-CC----cEEEEecCCc-ceeeeeecCcccEEEEEECCCCCEEEEeeCC-----CcEEEE
Q 020798           75 GVSDLVFS-SDSRFLVSASD-DK----TIRLWDVPTA-TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD-----ETVRIW  142 (321)
Q Consensus        75 ~i~~~~~~-~~~~~l~~~~~-d~----~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w  142 (321)
                      .+....|| |||++|+.+.. +|    .|+++|+.++ +.+....  ......+.|+||++.|+....+     ..|+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~--~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV--SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE--EEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc--cCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            57789999 99998875533 33    4999999988 5321100  1113467899999888776654     258888


Q ss_pred             ecCCCEE--EEEEe-CCCCCeeEEEEccCCCEEEEEeC---CCeEEEEeCCCCc-ee--eeeccCCCCCeEEEEEccCCC
Q 020798          143 DVKTGKC--LKVLP-AHSDPVTAVDFNRDGTMIVTSSY---DGLCRIWDASTGH-CM--KTLIDDENPPVSFVKFSPNGK  213 (321)
Q Consensus       143 d~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~-~~--~~~~~~~~~~~~~~~~~~~g~  213 (321)
                      ++.++..  ...+. ........+.|+||++.|+....   ...+.++|+.++. ..  ..+..........+.|+. |.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~  331 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TS  331 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TT
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CC
Confidence            8876531  22222 22234567899999998776552   3468888987652 12  333322233333444443 55


Q ss_pred             EEE-EEecC----CeEEEEeCCCC-cEEE-EEeccCCceeEEEeEEEecCCeEEEEeCCCCeE--EEEEc
Q 020798          214 FIL-VGTLD----NTLRLWNYSTG-KILK-TYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCV--YLWEL  274 (321)
Q Consensus       214 ~l~-~~~~d----~~i~i~d~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i--~vwd~  274 (321)
                      .|+ .+..+    ..|..+|+.++ +... .+. +.... .+.. +...++.++++...+|..  .++++
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~~~~~-~l~~-~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-HSEDV-FMES-IAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-CCSSE-EEEE-EEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-CCCCc-EEEE-EEEECCEEEEEEEeCCEEEEEEEec
Confidence            444 44333    36777777642 2112 222 22211 1221 222345666777777754  45564

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.77  E-value=4.3e-05  Score=64.37  Aligned_cols=216  Identities=6%  Similarity=-0.059  Sum_probs=128.4

Q ss_pred             ccEEEEEECCCCCEE-EEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEE-EEeeCCCcEEEEecCCCEEEE
Q 020798           74 QGVSDLVFSSDSRFL-VSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVKTGKCLK  151 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~  151 (321)
                      ..+..++|++.+..| .+-...+.|..+++........+.........+++++.+..| ++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            457889999755544 455567889999987665333222222334567888765554 455556788888876543333


Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEEe-CC-CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEe
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTSS-YD-GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWN  228 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d  228 (321)
                      .+.........+++.|.+..|+.+. .. +.|..++..... ...+..........++++|++..|..+. ..+.|..+|
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            3333335568899998766555544 44 678888876432 2233222233467899998766666554 467899999


Q ss_pred             CCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEE
Q 020798          229 YSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVA  294 (321)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  294 (321)
                      +........+.........++.    ..+..+.+....+.|..++..+++.+..+........+++
T Consensus       275 ~dG~~~~~~~~~~~~~P~giav----~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~  336 (386)
T 3v65_B          275 LDGSHRKAVISQGLPHPFAITV----FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH  336 (386)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEE----ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred             CCCCeeEEEEECCCCCceEEEE----ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence            7654333333222222233332    3566777777888899888666655554443323334443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.77  E-value=8.6e-06  Score=72.25  Aligned_cols=155  Identities=14%  Similarity=0.052  Sum_probs=95.9

Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeeecCcc-cEEEEEECC--CCCEEEEeeC------CCcEEEEecCCCEEEEEEeC
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHTN-YVFCVNFNP--QSNMIVSGAF------DETVRIWDVKTGKCLKVLPA  155 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~  155 (321)
                      +..++.++.|+.+..+|..+++.+........ .-..+.-+|  .+..++.++.      ++.|+.+|.++++.+-.+..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            45677888899999999999987655432110 000011111  1345555544      78999999999987765543


Q ss_pred             CCCC--------------------------------------eeEEEEccCCCEEEEEeCC----------------CeE
Q 020798          156 HSDP--------------------------------------VTAVDFNRDGTMIVTSSYD----------------GLC  181 (321)
Q Consensus       156 ~~~~--------------------------------------v~~~~~~~~~~~l~~~~~d----------------g~i  181 (321)
                      ....                                      ...+++.++...++.+..+                +.+
T Consensus       195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v  274 (571)
T 2ad6_A          195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence            2110                                      0135666666666665532                358


Q ss_pred             EEEeCCCCceeeeeccCC--------CCCeEEEEEccCCC---EEEEEecCCeEEEEeCCCCcEEEEEe
Q 020798          182 RIWDASTGHCMKTLIDDE--------NPPVSFVKFSPNGK---FILVGTLDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       182 ~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~---~l~~~~~d~~i~i~d~~~~~~~~~~~  239 (321)
                      ..+|.++++..-......        ......+....+|+   .++.++.+|.+.++|..+++++..+.
T Consensus       275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence            999999988765543221        01111223334774   56778889999999999999887664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=0.00012  Score=67.78  Aligned_cols=285  Identities=12%  Similarity=0.072  Sum_probs=162.1

Q ss_pred             ccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCC------CcccccccccccEEEEEECCCCCEEEEEeCCCcE
Q 020798           24 RAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPP------SPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTI   97 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~------~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i   97 (321)
                      ..|.++...++|.+ ..|+..+.+..++............      .+..........|.++...++|. |-.|+.++-|
T Consensus       258 ~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl  335 (781)
T 3v9f_A          258 SYIFSIKQLKDNKL-WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGI  335 (781)
T ss_dssp             CCEEEEEECTTSEE-EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCE
T ss_pred             ceEEEEEECCCCCE-EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeE
Confidence            46888888888764 4455545677777643221110000      00000112346799999998887 4456666678


Q ss_pred             EEEecCCcceeeee---------ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE---eCCCCCeeEEEE
Q 020798           98 RLWDVPTATCLKTL---------IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL---PAHSDPVTAVDF  165 (321)
Q Consensus        98 ~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~  165 (321)
                      ..++..........         ......|.++...++++. ..|+.++-|..||..++......   ......|.++..
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  414 (781)
T 3v9f_A          336 NFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLK  414 (781)
T ss_dssp             EEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEE
T ss_pred             EEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEE
Confidence            88887655422110         012356889988887764 44555566888887654322211   123356888888


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeeec-cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc--C
Q 020798          166 NRDGTMIVTSSYDGLCRIWDASTGHCMKTLI-DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH--T  242 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~  242 (321)
                      .+++.+. .|+.++-+..+|..+++...... ......+..+...++|.+. .|+. +-|..||..+++........  .
T Consensus       415 d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~  491 (781)
T 3v9f_A          415 DSEGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVIHHYDTSNSQ  491 (781)
T ss_dssp             CTTSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCCEEECTTTSS
T ss_pred             CCCCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEEecccCcccc
Confidence            7777654 46766678889887665332211 1123457788888877644 4555 56899998776544332221  0


Q ss_pred             CceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC----CCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          243 NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG----HTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      .....+.......+|.+.+ |+..+-|..||..+++.. .+..    ....|.++...++|.+.++..   +|.|..|+.
T Consensus       492 ~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~---~Glv~~~d~  566 (781)
T 3v9f_A          492 LLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG---EGLVCFPSA  566 (781)
T ss_dssp             CSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET---TEEEEESCT
T ss_pred             cccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC---CCceEEECC
Confidence            0011233344445666554 444334777887665433 2321    235789999988988776542   354467765


Q ss_pred             c
Q 020798          319 E  319 (321)
Q Consensus       319 ~  319 (321)
                      +
T Consensus       567 ~  567 (781)
T 3v9f_A          567 R  567 (781)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.76  E-value=2.9e-05  Score=60.91  Aligned_cols=202  Identities=12%  Similarity=0.166  Sum_probs=125.6

Q ss_pred             eeccCCcccEEEEEECCCCCEEE-EecCCceEEEeeccccCCCCCCCCCcccccc-cccccEEEEEECCCCCEEEEEeCC
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLA-SSSADKTLLTYSLSSISNSDSTPPSPLQKFT-GHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      +.+.|-...++.++|+|++..|+ +...++.|...|...         ..++.+. +-......|++.+++.++++.-.+
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g---------~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~   90 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG---------DLIRTIPLDFVKDLETIEYIGDNQFVISDERD   90 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC---------CEEEEEECSSCSSEEEEEECSTTEEEEEETTT
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC---------CEEEEEecCCCCChHHeEEeCCCEEEEEECCC
Confidence            56777778899999999876554 566677777776541         1222221 112456788899988877766667


Q ss_pred             CcEEEEecCCccee---eeee------cCcccEEEEEECCCCCEEEEeeCCCcEEEEecC---CCEEEEEEe-------C
Q 020798           95 KTIRLWDVPTATCL---KTLI------GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK---TGKCLKVLP-------A  155 (321)
Q Consensus        95 ~~i~iwd~~~~~~~---~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~---~~~~~~~~~-------~  155 (321)
                      +.+.++++.....+   ....      ..+.....++++|.++.|+++.......+|.++   ....+..+.       .
T Consensus        91 ~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~  170 (255)
T 3qqz_A           91 YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF  170 (255)
T ss_dssp             TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred             CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence            78989887654321   1111      123446899999999887777665555555543   111111111       1


Q ss_pred             CCCCeeEEEEccCCC-EEEEEeCCCeEEEEeCCCCceeeeeccC--------CCCCeEEEEEccCCCEEEEEecCCeEEE
Q 020798          156 HSDPVTAVDFNRDGT-MIVTSSYDGLCRIWDASTGHCMKTLIDD--------ENPPVSFVKFSPNGKFILVGTLDNTLRL  226 (321)
Q Consensus       156 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~l~~~~~d~~i~i  226 (321)
                      +.....+++++|... +++.......+..+|... +....+.-.        .-+....+++.++|+..+ .++.+.+..
T Consensus       171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~  248 (255)
T 3qqz_A          171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYR  248 (255)
T ss_dssp             CSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEE
T ss_pred             ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEE
Confidence            234568999999755 555666777888898764 333332211        123567899999998554 466676776


Q ss_pred             EeC
Q 020798          227 WNY  229 (321)
Q Consensus       227 ~d~  229 (321)
                      |..
T Consensus       249 f~~  251 (255)
T 3qqz_A          249 FTP  251 (255)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.74  E-value=2e-06  Score=78.98  Aligned_cols=194  Identities=13%  Similarity=0.111  Sum_probs=108.9

Q ss_pred             cEEEEEEC-CCCCEEEEecC-----CceEEEeecccc-CCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC---
Q 020798           25 AISSVKFS-HDGRLLASSSA-----DKTLLTYSLSSI-SNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD---   94 (321)
Q Consensus        25 ~v~~~~~s-~~g~~l~~~~~-----d~~v~~~~~~~~-~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d---   94 (321)
                      .+...+|| |||++||.+..     ...|.++++.+. ...   +    ..+.   .....+.|+|||+.|+....+   
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l---~----~~~~---~~~~~~~WspDg~~l~y~~~d~~~  244 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI---A----DKVS---GTNGEIVWGPDHTSLFYVTKDETL  244 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC---C----CCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC---C----cccc---CceeeEEEecCCCEEEEEEECCCC
Confidence            67889999 99998885432     235888887653 210   0    1111   123468899999888776654   


Q ss_pred             --CcEEEEecCCccee--eeee-cCcccEEEEEECCCCCEEEEee---CCCcEEEEecCCC--EE--EEEEeCCCCCeeE
Q 020798           95 --KTIRLWDVPTATCL--KTLI-GHTNYVFCVNFNPQSNMIVSGA---FDETVRIWDVKTG--KC--LKVLPAHSDPVTA  162 (321)
Q Consensus        95 --~~i~iwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~--~~--~~~~~~~~~~v~~  162 (321)
                        ..|.++++.++...  ..+. ........+.|+|||++|+...   ....|+++|+.++  +.  ............+
T Consensus       245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s  324 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD  324 (751)
T ss_dssp             CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred             CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence              25788888775421  1111 2233456789999999877654   2346888898765  22  2223333445566


Q ss_pred             EEEccCCCEEEEEeCC----CeEEEEeCCCCceeee-eccCCCCCeEEEEEccCCCEE-EEEecCCe--EEEEeC
Q 020798          163 VDFNRDGTMIVTSSYD----GLCRIWDASTGHCMKT-LIDDENPPVSFVKFSPNGKFI-LVGTLDNT--LRLWNY  229 (321)
Q Consensus       163 ~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~l-~~~~~d~~--i~i~d~  229 (321)
                      +.|+..+.+++....+    ..|..+|+.++..... +... ...+..-.+.+.+..| ++...++.  |.++|+
T Consensus       325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~-~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH-SEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC-CSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC-CCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            6655444444444443    2566677764322222 2222 2222222333444554 45556664  566665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.70  E-value=4.4e-05  Score=59.85  Aligned_cols=201  Identities=12%  Similarity=0.172  Sum_probs=127.0

Q ss_pred             eeecCcccEEEEEECCCCCEEE-EeeCCCcEEEEecCCCEEEEEEeCC-CCCeeEEEEccCCCEEEEEeCCCeEEEEeCC
Q 020798          110 TLIGHTNYVFCVNFNPQSNMIV-SGAFDETVRIWDVKTGKCLKVLPAH-SDPVTAVDFNRDGTMIVTSSYDGLCRIWDAS  187 (321)
Q Consensus       110 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  187 (321)
                      .+.+-...+..++++|+++.|+ +...++.|...|.. ++....++.. ......+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3445555789999999877655 46778889999987 7777766532 2457789999888776766677888888875


Q ss_pred             CCce---eeeec-----cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC---CCcEEEEEec-------cCCceeEEE
Q 020798          188 TGHC---MKTLI-----DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS---TGKILKTYTG-------HTNSKYCIS  249 (321)
Q Consensus       188 ~~~~---~~~~~-----~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~---~~~~~~~~~~-------~~~~~~~~~  249 (321)
                      ....   .....     ...+.....++++|.++.|+++.......+|.+.   ....+.....       +.....  .
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S--~  177 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS--G  177 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC--E
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce--e
Confidence            4321   12221     1234456899999999888877766555555543   1111222211       011111  2


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC---------CCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT---------DPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~---------~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ..+.+..+++++.....+.|.++|.. ++.+..+.-..         ..-..+++.|+|++.++ ++  ...++.+.
T Consensus       178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE--~n~~y~f~  250 (255)
T 3qqz_A          178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SE--PNRFYRFT  250 (255)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ET--TTEEEEEE
T ss_pred             EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cC--CceEEEEE
Confidence            23445678888888888999999976 44544432211         24479999999998887 43  34455444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.69  E-value=1.8e-05  Score=70.29  Aligned_cols=198  Identities=15%  Similarity=0.144  Sum_probs=122.4

Q ss_pred             CCEEEEEeC-CCcEEEEec-CCcceeeeeecCcc-----------cEEEEEECCCCCE----EEEeeCCCcEEEEecCCC
Q 020798           85 SRFLVSASD-DKTIRLWDV-PTATCLKTLIGHTN-----------YVFCVNFNPQSNM----IVSGAFDETVRIWDVKTG  147 (321)
Q Consensus        85 ~~~l~~~~~-d~~i~iwd~-~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~----l~~~~~dg~i~~wd~~~~  147 (321)
                      +..+++++. ++.|.-+|. .+++.+-+......           ....+++.|.+..    ++.++.|+.+..+|.+++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            345666666 788888998 88877654432111           0123455444444    788888999999999999


Q ss_pred             EEEEEEeCCCC----CeeE-EEEccCCCEEEEEe------CCCeEEEEeCCCCceeeeeccCCCC---------------
Q 020798          148 KCLKVLPAHSD----PVTA-VDFNRDGTMIVTSS------YDGLCRIWDASTGHCMKTLIDDENP---------------  201 (321)
Q Consensus       148 ~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~---------------  201 (321)
                      +.+-.......    .+.+ ..+ .++ .+++++      .++.|+.+|.++++.+-+.......               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            87765543220    1111 111 134 455544      3789999999998876543221100               


Q ss_pred             ----------------------CeEEEEEccCCCEEEEEecC----------------CeEEEEeCCCCcEEEEEeccCC
Q 020798          202 ----------------------PVSFVKFSPNGKFILVGTLD----------------NTLRLWNYSTGKILKTYTGHTN  243 (321)
Q Consensus       202 ----------------------~~~~~~~~~~g~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~~~~~  243 (321)
                                            .-...++.+....++.+..+                +.|..+|..+++.+-.++....
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                  00134566777777777655                3799999999999887764321


Q ss_pred             ce-------eEEEeEEEecCC---eEEEEeCCCCeEEEEEcccceEEEEec
Q 020798          244 SK-------YCISSTFSVTNG---KYIVSGSEDSCVYLWELQSRKVVQKLE  284 (321)
Q Consensus       244 ~~-------~~~~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~  284 (321)
                      ..       ..+.......+|   ..++.++.+|.++++|..+++++....
T Consensus       300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            10       111111111356   577889999999999999999876553

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.66  E-value=0.00012  Score=61.85  Aligned_cols=216  Identities=8%  Similarity=-0.025  Sum_probs=129.6

Q ss_pred             cccEEEEEECCCCCEEE-EEeCCCcEEEEecCCc----ceeeeeecCcccEEEEEECCCCC-EEEEeeCCCcEEEEecCC
Q 020798           73 EQGVSDLVFSSDSRFLV-SASDDKTIRLWDVPTA----TCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKT  146 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~  146 (321)
                      ...+..++|++.+..|+ +-...+.|..+++...    .....+.........+++.+.++ .+++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            45678999998655554 4456678888888652    12222222334567888988544 445555678899999876


Q ss_pred             CEEEEEEeCCCCCeeEEEEccCCCEEEEEeC--CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCe
Q 020798          147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY--DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNT  223 (321)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~  223 (321)
                      ......+.........+++.|.+..|+.+..  .+.|...++.... ...+....-.....+++++++..|..+. ..+.
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            5444444434455789999997666655542  3678888876433 2233222234567899998777776665 4678


Q ss_pred             EEEEeCCCCcEEEEEecc--CCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEE
Q 020798          224 LRLWNYSTGKILKTYTGH--TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISV  293 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  293 (321)
                      |..+|+............  ......++  .  ..+..+.+....+.|..+|..+++.+..+........++
T Consensus       270 I~~~d~dG~~~~~~~~~~~~l~~P~gl~--v--~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i  337 (400)
T 3p5b_L          270 ISSIDVNGGNRKTILEDEKRLAHPFSLA--V--FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM  337 (400)
T ss_dssp             EEEEETTSCCCEEEEECSSTTSSEEEEE--E--ETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred             EEEEeCCCCccEEEEeCCCCCCCCEEEE--E--eCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceE
Confidence            999998654333323221  12222232  2  356667777778889999976766555444333333444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=4.3e-05  Score=65.29  Aligned_cols=152  Identities=9%  Similarity=0.062  Sum_probs=91.2

Q ss_pred             cEEEEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC-CC----cEE
Q 020798           25 AISSVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD-DK----TIR   98 (321)
Q Consensus        25 ~v~~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-d~----~i~   98 (321)
                      ....++++| ++..|..+...+.|..++.....         +..+.........++|++++++|+.+.. ++    .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~---------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~  208 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY---------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNY  208 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE---------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE---------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence            456789998 45556555544777777664311         1122223455789999999996665543 22    233


Q ss_pred             EEecCCccee--eeeecCcccEEEEEECC-CCCEEEEeeCCCcEEEEecCCCEEEEEEeCC-CCCeeEEEEccCCCEE-E
Q 020798           99 LWDVPTATCL--KTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVKTGKCLKVLPAH-SDPVTAVDFNRDGTMI-V  173 (321)
Q Consensus        99 iwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l-~  173 (321)
                      ..+. .+...  ..+. .......++++| ++..+++-...+.|+.++...+......... ......++|+|+++.| +
T Consensus       209 ~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          209 ILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             EEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred             EEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence            3332 22211  1221 122345778999 6666666667789999998877643322221 2345789999999954 4


Q ss_pred             EEeCCCeEEEEeCC
Q 020798          174 TSSYDGLCRIWDAS  187 (321)
Q Consensus       174 ~~~~dg~i~~~d~~  187 (321)
                      +-...+.|..++..
T Consensus       287 ~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          287 VVVNQHYILRSDYD  300 (430)
T ss_dssp             EETTTTEEEEEEEE
T ss_pred             EECCCCEEEEEeCC
Confidence            55567888887754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.64  E-value=8.1e-05  Score=63.62  Aligned_cols=201  Identities=11%  Similarity=0.077  Sum_probs=111.1

Q ss_pred             ccEEEEEECCC--CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC---Cc-E
Q 020798           24 RAISSVKFSHD--GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD---KT-I   97 (321)
Q Consensus        24 ~~v~~~~~s~~--g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d---~~-i   97 (321)
                      .....++|+|+  +..|+.+...+.|+.++.....         +..+.........++++++|+++++....   .. +
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~---------v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv  209 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY---------VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGI  209 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE---------EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCE---------EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceE
Confidence            34568899985  3344444433777777653211         11222233457899999999944443321   11 3


Q ss_pred             EEEecCCcceeeeeecCcccEEEEEECC-CCCEEEEeeCCCcEEEEecCCCEEEE-EEeCCC-CCeeEEEEccCCCEEE-
Q 020798           98 RLWDVPTATCLKTLIGHTNYVFCVNFNP-QSNMIVSGAFDETVRIWDVKTGKCLK-VLPAHS-DPVTAVDFNRDGTMIV-  173 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~l~-  173 (321)
                      ...+...................++++| ++..+++-..++.|+.+|..++.... .+.... .....++|+|+++.|+ 
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          210 YLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYI  289 (433)
T ss_dssp             EEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred             EEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEE
Confidence            3333221111001111123345678899 66666666677889999988676522 222211 2234699999998554 


Q ss_pred             EEeCCCeEEEEeCC--CCce--eeeeccC--------------CCCCeEEEEE---------ccCCCEEEEEecCCeEEE
Q 020798          174 TSSYDGLCRIWDAS--TGHC--MKTLIDD--------------ENPPVSFVKF---------SPNGKFILVGTLDNTLRL  226 (321)
Q Consensus       174 ~~~~dg~i~~~d~~--~~~~--~~~~~~~--------------~~~~~~~~~~---------~~~g~~l~~~~~d~~i~i  226 (321)
                      +-...+.|+.++..  ++..  ...+...              .-.....+++         .++|.++++-...+.|+.
T Consensus       290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~  369 (433)
T 4hw6_A          290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV  369 (433)
T ss_dssp             EETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred             EeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence            45567889997764  2221  0111110              0112456888         677776666566788999


Q ss_pred             EeCCCCcE
Q 020798          227 WNYSTGKI  234 (321)
Q Consensus       227 ~d~~~~~~  234 (321)
                      ++. ++..
T Consensus       370 ~~~-~G~v  376 (433)
T 4hw6_A          370 LTP-EGRV  376 (433)
T ss_dssp             ECT-TSEE
T ss_pred             ECC-CCCE
Confidence            984 5543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.60  E-value=0.00014  Score=59.38  Aligned_cols=205  Identities=9%  Similarity=-0.009  Sum_probs=122.0

Q ss_pred             ccEEEEEECCCCCEE-EEEeCCCcEEEEecCCc---ceeeee-ecCcccEEEEEECCCCCEE-EEeeCCCcEEEEecCCC
Q 020798           74 QGVSDLVFSSDSRFL-VSASDDKTIRLWDVPTA---TCLKTL-IGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVKTG  147 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~  147 (321)
                      ..+..++|++.+..| .+-...+.|..+++...   .....+ .........+++++.++.| ++-...+.|.+.++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            456789999865544 45556688999998751   222222 2122345678888755544 55466788999998754


Q ss_pred             EEEEEEeCCCCCeeEEEEccCCCEEEEEeC-C-CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeE
Q 020798          148 KCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-D-GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTL  224 (321)
Q Consensus       148 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i  224 (321)
                      .....+.........+++.|.+..++.+.. . +.|..+++... ....+....-.....+++++++..|..+. ..+.|
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I  188 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence            433333333456789999986665555543 3 67888887543 23333222234567899998877776655 45789


Q ss_pred             EEEeCCCCcEEEEEecc--CCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEe
Q 020798          225 RLWNYSTGKILKTYTGH--TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       225 ~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      ..+|+............  ......++.    ..+..+.+-...+.|..++..+++.+..+
T Consensus       189 ~~~d~dg~~~~~~~~~~~~~~~P~giav----~~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          189 SSIDVNGGNRKTILEDEKRLAHPFSLAV----FEDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEETTSCSCEEEEECTTTTSSEEEEEE----ETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEecCCCceEEEeecCCccCCcEEEEE----ECCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            99998643322222211  112223322    24677777778889999997666544444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.56  E-value=0.00019  Score=61.80  Aligned_cols=242  Identities=16%  Similarity=0.168  Sum_probs=138.0

Q ss_pred             cEEEEEECCC-CCEEE-EEeCCCcEEEEecCCcceeeeeec---CcccEEEEEE-------CCCCCEEEEeeCCC-----
Q 020798           75 GVSDLVFSSD-SRFLV-SASDDKTIRLWDVPTATCLKTLIG---HTNYVFCVNF-------NPQSNMIVSGAFDE-----  137 (321)
Q Consensus        75 ~i~~~~~~~~-~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~~~~~dg-----  137 (321)
                      ....|+|+|. +..|+ +....+.|++.|+..+........   .......++|       +++++.|+.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3568999983 44444 444446788899888765433221   1234789999       99999666665543     


Q ss_pred             --cEEEEecCC-CEEE-----EEEeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEeCC-------CCce----------
Q 020798          138 --TVRIWDVKT-GKCL-----KVLPAHSDPVTAVDFNRD-GTMIVTSSYDGLCRIWDAS-------TGHC----------  191 (321)
Q Consensus       138 --~i~~wd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~-------~~~~----------  191 (321)
                        .+.+++... +...     ..+... .....++++|+ +.++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266665333 1111     122211 23457788995 5555566678889999987       4432          


Q ss_pred             -eeeec-cCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeC--CCCcE--EEEEecc---CC---------c-eeEEEeE
Q 020798          192 -MKTLI-DDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNY--STGKI--LKTYTGH---TN---------S-KYCISST  251 (321)
Q Consensus       192 -~~~~~-~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~--~~~~~--~~~~~~~---~~---------~-~~~~~~~  251 (321)
                       ...+. .........++++|+|+.|..+. ....|+.++.  ..+..  ...+.+.   .+         . .......
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             11211 12223356899999999655554 5678888664  33321  1222221   00         0 0011022


Q ss_pred             EEe-------cCCeEEEEeCCCCeEEEEEcccceEEEEecCC------------------------CCCeEEEEecCC-C
Q 020798          252 FSV-------TNGKYIVSGSEDSCVYLWELQSRKVVQKLEGH------------------------TDPVISVASHPT-E  299 (321)
Q Consensus       252 ~~~-------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h------------------------~~~v~~~~~~p~-~  299 (321)
                      +..       .++.++++-..+.+|+.++. ++. +..+.+.                        -..-.+|++.++ +
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            222       35667777777888999983 443 2233211                        123468999997 7


Q ss_pred             ceEEEEeecCCccEEEcccccC
Q 020798          300 NIIASGALDNDRTVKIWTQEKE  321 (321)
Q Consensus       300 ~~l~s~~~d~~~~i~iw~~~~~  321 (321)
                      .++++=.  .+.+|+.++++.+
T Consensus       457 ~lyVaD~--~N~rIrki~~~~~  476 (496)
T 3kya_A          457 MFYVHDQ--VGHTIRTISMEQE  476 (496)
T ss_dssp             EEEEEET--TTTEEEEEEECCC
T ss_pred             EEEEEeC--CCCEEEEEECCCC
Confidence            7666533  4578999888754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.50  E-value=0.00068  Score=62.27  Aligned_cols=208  Identities=9%  Similarity=-0.035  Sum_probs=124.8

Q ss_pred             cccEEEEEECCCCC-EEEEEeCCCcEEEEecCCc----ceeeeeecCcccEEEEEECCCCCEE-EEeeCCCcEEEEecCC
Q 020798           73 EQGVSDLVFSSDSR-FLVSASDDKTIRLWDVPTA----TCLKTLIGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVKT  146 (321)
Q Consensus        73 ~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~  146 (321)
                      ...+..|+|.+.+. ++++-...+.|+.+++...    .....+.........|++.+.++.| ++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            35577899988544 4455556678888888653    1122222223345678888877555 4555678899999875


Q ss_pred             CEEEEEEeCCCCCeeEEEEccCCCEEEEEeC--CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCe
Q 020798          147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY--DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNT  223 (321)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~  223 (321)
                      ......+.........|++.|.+..|+.+..  .+.|...++.... ...+....-.....+++++.+..|+.+. ..+.
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~  581 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  581 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence            5444444444456789999997666655543  3678888876433 3333333334567899998776766664 4568


Q ss_pred             EEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEe
Q 020798          224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      |..+++..................+....  ..+.++++-...+.|...+..+++.+..+
T Consensus       582 I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          582 ISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            99999865444333332211111222222  24566667677788888887666544444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.49  E-value=9.7e-05  Score=60.26  Aligned_cols=185  Identities=14%  Similarity=0.298  Sum_probs=114.8

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC----CC---EEEEEe-C--CCeEEEEeC--CCCceee
Q 020798          126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD----GT---MIVTSS-Y--DGLCRIWDA--STGHCMK  193 (321)
Q Consensus       126 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--dg~i~~~d~--~~~~~~~  193 (321)
                      ....++.....+-+.+||+ +++.++.++.  ..+..+...|+    ++   ++++.. .  ++++.+|++  .++. +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            3456666677788999999 7887877753  56677776663    22   223333 3  578999966  3333 33


Q ss_pred             eecc---C--CC-CCeEEEEE--ccC-CC-EEEEEecCCeEEEEeCC-------CCcEEEEEeccCCceeEEEeEEEecC
Q 020798          194 TLID---D--EN-PPVSFVKF--SPN-GK-FILVGTLDNTLRLWNYS-------TGKILKTYTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       194 ~~~~---~--~~-~~~~~~~~--~~~-g~-~l~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (321)
                      .+..   .  .. ..+..+++  +|. ++ ++++...++.+..|++.       +.++++.+......    ..+...+.
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~----EgcvvDd~  190 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQT----EGMAADDE  190 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCE----EEEEEETT
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCc----ceEEEcCC
Confidence            3311   0  11 23344555  664 54 67778888999999872       33567777654432    23344455


Q ss_pred             CeEEEEeCCCCeEEEEEcc-----cceEEEEec-CC-CCCeEEEEe--cCCCc-eEEEEeecCCccEEEcccc
Q 020798          257 GKYIVSGSEDSCVYLWELQ-----SRKVVQKLE-GH-TDPVISVAS--HPTEN-IIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~-~h-~~~v~~~~~--~p~~~-~l~s~~~d~~~~i~iw~~~  319 (321)
                      ...|+.+-++.-|..++.+     +++++..+. ++ ...+..|++  .++++ +|++.+.+ +.+..+|+.+
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG-~~s~~Vydr~  262 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG-NSSYAIYDRQ  262 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG-GTEEEEEESS
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC-CCEEEEEECC
Confidence            6677888888666666654     345665553 22 246888887  56666 67776654 5688899875

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.49  E-value=0.00018  Score=63.96  Aligned_cols=156  Identities=12%  Similarity=0.105  Sum_probs=96.5

Q ss_pred             CCEEEEEeCCCcEEEEecCCcceeeeeecCcc----cEE---EEEEC-CCCC-EEEEee------CCCcEEEEecCCCEE
Q 020798           85 SRFLVSASDDKTIRLWDVPTATCLKTLIGHTN----YVF---CVNFN-PQSN-MIVSGA------FDETVRIWDVKTGKC  149 (321)
Q Consensus        85 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~v~---~~~~~-~~~~-~l~~~~------~dg~i~~wd~~~~~~  149 (321)
                      +..++.++.|+.|..+|..+++.+........    .+.   .+.-. .+++ .+++++      .++.|+.+|.++++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45677788999999999999987655432210    010   11111 1222 566654      378999999999987


Q ss_pred             EEEEeCCCCC-----------------------------------------eeEEEEccCCCEEEEEeC-----------
Q 020798          150 LKVLPAHSDP-----------------------------------------VTAVDFNRDGTMIVTSSY-----------  177 (321)
Q Consensus       150 ~~~~~~~~~~-----------------------------------------v~~~~~~~~~~~l~~~~~-----------  177 (321)
                      +-..+.....                                         -..+++.|....++.+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            6554321100                                         013456666667766552           


Q ss_pred             ---------C----CeEEEEeCCCCceeeeeccC-CC-------CCeEEEEEc-cCCC---EEEEEecCCeEEEEeCCCC
Q 020798          178 ---------D----GLCRIWDASTGHCMKTLIDD-EN-------PPVSFVKFS-PNGK---FILVGTLDNTLRLWNYSTG  232 (321)
Q Consensus       178 ---------d----g~i~~~d~~~~~~~~~~~~~-~~-------~~~~~~~~~-~~g~---~l~~~~~d~~i~i~d~~~~  232 (321)
                               |    +.|..+|.++++..-..... +.       .....+... .+|+   .++.++.+|.+.++|..++
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  356 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence                     2    58999999999876554322 11       111112222 4674   6778899999999999999


Q ss_pred             cEEEEEec
Q 020798          233 KILKTYTG  240 (321)
Q Consensus       233 ~~~~~~~~  240 (321)
                      +++..+..
T Consensus       357 ~~lw~~~~  364 (582)
T 1flg_A          357 KLQNAFPF  364 (582)
T ss_dssp             CEEEEEES
T ss_pred             CEeccccc
Confidence            98876643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.49  E-value=0.00033  Score=58.05  Aligned_cols=232  Identities=8%  Similarity=0.025  Sum_probs=130.3

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEe-eCCCcEEEEecCCCEEEEEEeC
Q 020798           77 SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG-AFDETVRIWDVKTGKCLKVLPA  155 (321)
Q Consensus        77 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~  155 (321)
                      .|.+..++. +|+.+ ....|+..++........+. ....+..++|++..+.|+.+ ...+.|+.+++........+..
T Consensus        37 ~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           37 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             CEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             cccccccCc-eeEee-cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            444555533 44433 34568888887655433332 23346789999876665544 4668899999876543333333


Q ss_pred             CCCCeeEEEEccCCC-EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cC-CeEEEEeCCCC
Q 020798          156 HSDPVTAVDFNRDGT-MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LD-NTLRLWNYSTG  232 (321)
Q Consensus       156 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d-~~i~i~d~~~~  232 (321)
                      .......+++.+.+. ++++-...+.|.+.++.... ...+..........++++|.+..|+.+. .. +.|..+++...
T Consensus       114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~  192 (349)
T 3v64_C          114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  192 (349)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence            334457889887554 44555567889999987543 2233322334467899998666555544 34 77888887643


Q ss_pred             cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCcc
Q 020798          233 KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT  312 (321)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~  312 (321)
                      .. ..+.. ..........+.+.++.+.++-...+.|..+++........+......-.++++. .+.++++-.  ..+.
T Consensus       193 ~~-~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~--~~~~  267 (349)
T 3v64_C          193 GR-RIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDW--HTKS  267 (349)
T ss_dssp             SC-EESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEET--TTTE
T ss_pred             Cc-EEEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecC--CCCe
Confidence            22 22211 1111122223333456666666777899999986543322233333345677773 444444432  2345


Q ss_pred             EEEcc
Q 020798          313 VKIWT  317 (321)
Q Consensus       313 i~iw~  317 (321)
                      |...+
T Consensus       268 V~~~~  272 (349)
T 3v64_C          268 INSAN  272 (349)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.47  E-value=0.00042  Score=58.31  Aligned_cols=232  Identities=8%  Similarity=0.020  Sum_probs=132.2

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCCCcEEEEecCCCEEEEEEeC
Q 020798           77 SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFDETVRIWDVKTGKCLKVLPA  155 (321)
Q Consensus        77 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~  155 (321)
                      .+.+..++ .+|+.+ ....|+..++.......... .......++|++.++.|+ +-...+.|+.+++........+..
T Consensus        80 ~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  156 (386)
T 3v65_B           80 SCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  156 (386)
T ss_dssp             CEEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred             eECCcccc-ceeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence            34444443 344433 44678888887665433332 334577899998666555 445668899999876654443333


Q ss_pred             CCCCeeEEEEccCCCE-EEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec-C-CeEEEEeCCCC
Q 020798          156 HSDPVTAVDFNRDGTM-IVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL-D-NTLRLWNYSTG  232 (321)
Q Consensus       156 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-d-~~i~i~d~~~~  232 (321)
                      .......+++.+.+.. +++-...+.|.+.++.... ...+..........++++|.+..|+.+.. . +.|..+++...
T Consensus       157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~  235 (386)
T 3v65_B          157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  235 (386)
T ss_dssp             SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence            3334567888875554 4555567788888876543 22333233345678999987666655543 3 67888887643


Q ss_pred             cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCcc
Q 020798          233 KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT  312 (321)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~  312 (321)
                      ...........  ......+.+.++.+.++-...+.|..+++........+......-.++++. .+.++++-.  ..+.
T Consensus       236 ~~~~~~~~~~~--~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~--~~~~  310 (386)
T 3v65_B          236 GRRIIADTHLF--WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDW--HTKS  310 (386)
T ss_dssp             SCEEEECSSCS--CEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEET--TTTE
T ss_pred             CcEEEEECCCC--CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeC--CCCe
Confidence            33222221111  122223333456666666778899999986543322233333345777773 444455432  3455


Q ss_pred             EEEcc
Q 020798          313 VKIWT  317 (321)
Q Consensus       313 i~iw~  317 (321)
                      |..++
T Consensus       311 V~~~~  315 (386)
T 3v65_B          311 INSAN  315 (386)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66555

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.43  E-value=0.00042  Score=56.58  Aligned_cols=204  Identities=5%  Similarity=-0.040  Sum_probs=122.0

Q ss_pred             cEEEEEECCCC-CEEEEEeCCCcEEEEecCCcceee-eeecCcccEEEEEECCCCCE-EEEeeCCCcEEEEecCCCEEEE
Q 020798           75 GVSDLVFSSDS-RFLVSASDDKTIRLWDVPTATCLK-TLIGHTNYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGKCLK  151 (321)
Q Consensus        75 ~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~  151 (321)
                      ....++|.+.+ +++.+-...+.|..+++....... .+...-.....+++.+.+.. +++-...+.|.++++.......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            46688998854 444555667889999887653211 11111223557888875554 4555566789999986543222


Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEEe--CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEe
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTSS--YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWN  228 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d  228 (321)
                      ...........+++.|.+..++.+.  ..+.|...+..... ...+....-.....+++++++..|..+. ..+.|..+|
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            2323345568899998766665555  35778888876432 2233222233467899999776666654 467899999


Q ss_pred             CCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEe
Q 020798          229 YSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      +..................++.    ..+..+.+-...+.|..++..+++....+
T Consensus       195 ~dG~~~~~~~~~~~~~P~glav----~~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          195 LDGTNRQAVVKGSLPHPFALTL----FEDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             TTSCSCEEEECSCCSCEEEEEE----ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCCceEEEecCCCCCceEEEE----eCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            8643322222222222233322    24566667777889999998766544443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.42  E-value=0.00046  Score=56.62  Aligned_cols=276  Identities=8%  Similarity=0.054  Sum_probs=138.9

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccc-ccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQ-KFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      ...+.++.|.+++..+++| ..+.+.. ........     ..+. ........+..+.+.+ ++.++ ++..+.|.. .
T Consensus        35 ~~~~~~v~~~~~~~~~~~G-~~g~i~~-s~DgG~tW-----~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S  104 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVG-VNATLME-TRDGGQTW-----EPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-T  104 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEE-TTTEEEE-ESSTTSSC-----EECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-E
T ss_pred             CCcEEEEEECCCCcEEEEc-CCCeEEE-eCCCCCCC-----eECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-E
Confidence            3578999998888877755 4665432 22111110     1110 0111234678888876 44444 455664433 3


Q ss_pred             cCCcceeeeee---cCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE-eCCCCCeeEEEEccCCCEEEEEeC
Q 020798          102 VPTATCLKTLI---GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL-PAHSDPVTAVDFNRDGTMIVTSSY  177 (321)
Q Consensus       102 ~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~  177 (321)
                      .+.++......   .+...+..+.+.+++..++.+ .++.|..- ...++.-... ......+..+++.|++..++.+..
T Consensus       105 ~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~  182 (327)
T 2xbg_A          105 TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR  182 (327)
T ss_dssp             SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT
T ss_pred             CCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC
Confidence            33333322221   123446677776666555544 45554321 1223222222 234456889999998887766654


Q ss_pred             CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc-CCceeEEEeEEEecC
Q 020798          178 DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH-TNSKYCISSTFSVTN  256 (321)
Q Consensus       178 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  256 (321)
                      .+..+-.|.. +..-..+.......+..+.+.++++.+ +++.+|.+.+.+...++.-..+... ......+......++
T Consensus       183 G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~  260 (327)
T 2xbg_A          183 GSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP  260 (327)
T ss_dssp             SSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred             CcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence            4444444421 111111112233457788888988765 4556787777642223322222111 001111222223345


Q ss_pred             CeEEEEeCCCCeEEEEEcccceEEEEec---CCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          257 GKYIVSGSEDSCVYLWELQSRKVVQKLE---GHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      +..++++. +|.| ++....++.-..+.   .+...+.++.|.+++..++.|   ++|.|.-++
T Consensus       261 ~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G---~~G~i~~~~  319 (327)
T 2xbg_A          261 NEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILG---QKGILLRYV  319 (327)
T ss_dssp             SCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEEC---STTEEEEEC
T ss_pred             CEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEc---CCceEEEEc
Confidence            66666554 6766 34544454433333   234567889887677666665   357776554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.41  E-value=0.00054  Score=56.81  Aligned_cols=223  Identities=15%  Similarity=0.134  Sum_probs=117.4

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcce--eeeee---cCcccEEEEEECCC---CCEEEEeeC-C-----CcEE
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC--LKTLI---GHTNYVFCVNFNPQ---SNMIVSGAF-D-----ETVR  140 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~i~  140 (321)
                      ....++|.|+|++++ +...+.|.+++  .++.  +..+.   .-......++++|+   +..|+.+.. .     ..|.
T Consensus        32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            467899999998555 45669999998  3321  11111   11345788999998   555544432 2     5677


Q ss_pred             EEecCCCE-----E-EEEEeC---CCCCeeEEEEccCCCEEEEEeC-------------CCeEEEEeCCCC---------
Q 020798          141 IWDVKTGK-----C-LKVLPA---HSDPVTAVDFNRDGTMIVTSSY-------------DGLCRIWDASTG---------  189 (321)
Q Consensus       141 ~wd~~~~~-----~-~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~~~d~~~~---------  189 (321)
                      .++...+.     . ...++.   .......++|.|+|.++++.+.             .|.|.-++....         
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            88876431     1 112331   1123468999999976666432             145555554421         


Q ss_pred             ---ceeeeeccCCCCCeEEEEEcc-CCCEEEEEecCCe--------EEEEeCCC----------------CcEEEEEecc
Q 020798          190 ---HCMKTLIDDENPPVSFVKFSP-NGKFILVGTLDNT--------LRLWNYST----------------GKILKTYTGH  241 (321)
Q Consensus       190 ---~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~~--------i~i~d~~~----------------~~~~~~~~~~  241 (321)
                         .....+.... .....++|+| +|.++++-...+.        |.+.....                ..++..+..+
T Consensus       189 ~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~  267 (352)
T 2ism_A          189 RRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG  267 (352)
T ss_dssp             CTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred             CCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC
Confidence               0001111111 1244678999 6665555333222        33332110                0111112111


Q ss_pred             CCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce----E--EEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK----V--VQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~--~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      . ....+  .+  .+|.++++.-..+.|...++....    .  ...+-.-...+.++++.|||.++++..
T Consensus       268 ~-ap~G~--~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          268 F-PPGNL--AF--FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             C-CEEEE--EE--ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             C-CCcce--EE--ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            1 11112  22  357777777677788888775432    1  122212235789999999998877754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.34  E-value=0.00061  Score=55.61  Aligned_cols=199  Identities=14%  Similarity=0.274  Sum_probs=119.2

Q ss_pred             EEEECCC---CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCC----CCE--E-E-EeeC--CCcEEEEec
Q 020798           78 DLVFSSD---SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ----SNM--I-V-SGAF--DETVRIWDV  144 (321)
Q Consensus        78 ~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l-~-~~~~--dg~i~~wd~  144 (321)
                      .+..+|.   ..+++.....+-+.+||+ .++.+..+..  +.+..+.+-|.    ++.  + + +.-.  +.+|.+|++
T Consensus        30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i  106 (355)
T 3amr_A           30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (355)
T ss_dssp             EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred             cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence            3444453   345666677788999999 6776666643  44566665552    221  2 2 3333  578999976


Q ss_pred             --CCCEEEEEEeC-------CCCCeeEEEE--ccC-CC-EEEEEeCCCeEEEEeCC---C----CceeeeeccCCCCCeE
Q 020798          145 --KTGKCLKVLPA-------HSDPVTAVDF--NRD-GT-MIVTSSYDGLCRIWDAS---T----GHCMKTLIDDENPPVS  204 (321)
Q Consensus       145 --~~~~~~~~~~~-------~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~~~d~~---~----~~~~~~~~~~~~~~~~  204 (321)
                        .+++ +..+..       ....+..+++  +|. +. ++++...+|.+..|++.   .    .+.++++..  ...+.
T Consensus       107 Dp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~E  183 (355)
T 3amr_A          107 DGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTE  183 (355)
T ss_dssp             CTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEE
T ss_pred             CCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcc
Confidence              3333 333311       1144556777  664 43 57778888999998872   2    234445433  34577


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCC-----CCcEEEEEec-cC-CceeEEEeEEEecCCe-EEEEeC-CCCeEEEEEcc
Q 020798          205 FVKFSPNGKFILVGTLDNTLRLWNYS-----TGKILKTYTG-HT-NSKYCISSTFSVTNGK-YIVSGS-EDSCVYLWELQ  275 (321)
Q Consensus       205 ~~~~~~~g~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~vwd~~  275 (321)
                      .+..++....|+++-++..|..|+..     +++.+..+.. +- ...-.+. .+..++++ +|++.+ .+.++.+||.+
T Consensus       184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLa-i~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLT-IYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEE-EEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEE-EEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            88899988899999998778888854     3445554421 11 1223333 22233444 555444 67799999996


Q ss_pred             -cceEEEEe
Q 020798          276 -SRKVVQKL  283 (321)
Q Consensus       276 -~~~~~~~~  283 (321)
                       +.+.+..+
T Consensus       263 ~~~~~vg~f  271 (355)
T 3amr_A          263 GKNKYVADF  271 (355)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCcEEEEE
Confidence             55666555

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.33  E-value=0.00099  Score=56.29  Aligned_cols=212  Identities=10%  Similarity=0.029  Sum_probs=124.4

Q ss_pred             cccEEEEEECCCCCEE-EEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-CCEEEEEeCCCcEEEE
Q 020798           23 LRAISSVKFSHDGRLL-ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLW  100 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~d~~i~iw  100 (321)
                      ...+..++|++.+..| .+-...+.|..+++.....    .......+.........+++.+. +++.++-...+.|.+.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~----~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~  186 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG----VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  186 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC----CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence            4567789999865554 4444567777776643110    00011111222345678899874 4555555667889999


Q ss_pred             ecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC--CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE-eC
Q 020798          101 DVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF--DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS-SY  177 (321)
Q Consensus       101 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~  177 (321)
                      +++.......+.........++++|.+..|+.+..  .+.|...++............-.....+++++++..|+.+ ..
T Consensus       187 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~  266 (400)
T 3p5b_L          187 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  266 (400)
T ss_dssp             CTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             eCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC
Confidence            98765433333333345788999997776665543  3678888876443333333333456889999877766655 45


Q ss_pred             CCeEEEEeCCCCceeeeeccC--CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec
Q 020798          178 DGLCRIWDASTGHCMKTLIDD--ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG  240 (321)
Q Consensus       178 dg~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~  240 (321)
                      .+.|..+|+.... ...+...  .......+++. .+..+++-...+.|..+|..+++.+..+..
T Consensus       267 ~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          267 LHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE  329 (400)
T ss_dssp             TTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred             CCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence            6789999986543 2222221  12234455552 334444545567899999777776666543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.30  E-value=1.1e-05  Score=73.24  Aligned_cols=216  Identities=7%  Similarity=-0.039  Sum_probs=121.5

Q ss_pred             cEEEEEECCCCCEEEEE-eCCCcEEEEecCC----cceeeeeecCcccEEEEEECCCCCE-EEEeeCCCcEEEEecCCCE
Q 020798           75 GVSDLVFSSDSRFLVSA-SDDKTIRLWDVPT----ATCLKTLIGHTNYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGK  148 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~  148 (321)
                      .+..++|.+.+..|+.+ ...+.|..+++..    ......+.........+++.+.++. +++-...+.|.++++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            45678898866655544 4567899998875    2211111111123456788865544 4444566889999987554


Q ss_pred             EEEEEeCCCCCeeEEEEccCCCEEEEEeC--CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE-ecCCeEE
Q 020798          149 CLKVLPAHSDPVTAVDFNRDGTMIVTSSY--DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-TLDNTLR  225 (321)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~d~~i~  225 (321)
                      ....+.........+++.|.+..|+.+..  .+.|..+++.... ...+..........++++|++..|+.+ ...+.|.
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            33333322344578899987655554442  2677777665322 222222222334678999876555554 4567899


Q ss_pred             EEeCCCCcEEEEEeccC--CceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEe
Q 020798          226 LWNYSTGKILKTYTGHT--NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVAS  295 (321)
Q Consensus       226 i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~  295 (321)
                      .+++........+....  .....++.    ..+.++++....+.|..++..+++.+..+........+|++
T Consensus       566 ~~d~dG~~~~~~~~~~~~~~~P~glav----d~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          566 SIDVNGGNRKTILEDEKRLAHPFSLAV----FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL  633 (699)
T ss_dssp             EECSSSSCCEEECCCSSSCSSCCCCEE----ETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred             EEccCCCceEEEEecCCcCCCceEeEE----ECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence            99986433222222111  11112221    23466667777889999998888877766543333455543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.30  E-value=0.00085  Score=54.28  Aligned_cols=198  Identities=11%  Similarity=0.101  Sum_probs=121.0

Q ss_pred             EEEEEECCCCCEEE-EEeCCCcEEEEecCCcceeeeeecC-------cccEEEEEE---CCCCCEEEEee----------
Q 020798           76 VSDLVFSSDSRFLV-SASDDKTIRLWDVPTATCLKTLIGH-------TNYVFCVNF---NPQSNMIVSGA----------  134 (321)
Q Consensus        76 i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~~~~----------  134 (321)
                      ..+++|++....|. +.-..++|..|+...+.........       ...+..+.+   .|+++.+++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            34678977544454 4447899999998765433222211       113578999   68876666543          


Q ss_pred             ---CCCcEEEEecC---CCEEEEEEeC-------------CCCCeeEEEEccCCCEEEEEeCC-CeEEEEeCCCCceeee
Q 020798          135 ---FDETVRIWDVK---TGKCLKVLPA-------------HSDPVTAVDFNRDGTMIVTSSYD-GLCRIWDASTGHCMKT  194 (321)
Q Consensus       135 ---~dg~i~~wd~~---~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~  194 (321)
                         .+..+..||+.   +++.+.....             .......++..++|+..++++.. +.|...+..... ...
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~~~  173 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-VST  173 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-EEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-Eee
Confidence               25779999998   6765543331             11236789999999999999888 888777766432 222


Q ss_pred             ecc-----CCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcE--EEEE-ecc---CCceeEEEeEEEecCCeE-EEE
Q 020798          195 LID-----DENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKI--LKTY-TGH---TNSKYCISSTFSVTNGKY-IVS  262 (321)
Q Consensus       195 ~~~-----~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~--~~~~-~~~---~~~~~~~~~~~~~~~~~~-l~~  262 (321)
                      +..     ......+.++++|+|+.|++....+.|..+|+.....  +..- .+.   -.....+  .....+|+. +++
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgi--lp~~~~G~vllV~  251 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKI--VTVPVGNESVLVG  251 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEE--EEEEETTEEEEEE
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccc--cccccCCEEEEEE
Confidence            211     1122366899999999998887799999999885433  2211 011   0111112  122246776 455


Q ss_pred             eCCCCeEEEEEccc
Q 020798          263 GSEDSCVYLWELQS  276 (321)
Q Consensus       263 ~~~dg~i~vwd~~~  276 (321)
                      .+..+.+.+.+...
T Consensus       252 ~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          252 ARAPYAISFRSWDN  265 (334)
T ss_dssp             EETTEEEEEECSST
T ss_pred             cCCCCEEEEECCCC
Confidence            55566655655433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.29  E-value=0.00095  Score=54.46  Aligned_cols=207  Identities=6%  Similarity=0.031  Sum_probs=121.5

Q ss_pred             ccEEEEEECCCC-CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-CCEEEEEeCCCcEEEEe
Q 020798           24 RAISSVKFSHDG-RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-SRFLVSASDDKTIRLWD  101 (321)
Q Consensus        24 ~~v~~~~~s~~g-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd  101 (321)
                      .....++|.+.+ .+..+-...+.|..++......       ....+...-.....+++.+. ++++++-...+.|.+++
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-------~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~  107 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN  107 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-------CCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-------eEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEE
Confidence            345688999854 4455555667787776643210       00111111234567888874 44555556677899999


Q ss_pred             cCCcceeeeeecCcccEEEEEECCCCCEEEEeeC--CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE-eCC
Q 020798          102 VPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF--DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS-SYD  178 (321)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d  178 (321)
                      +..................++++|.+..++.+..  .+.|...++............-.....++++|++..|+.+ ...
T Consensus       108 ~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          108 LDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCC
Confidence            8754322222233345678999987666665553  5778888875432222222223445789999876655554 567


Q ss_pred             CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEe
Q 020798          179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       179 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~  239 (321)
                      +.|..+|+.... ...+..........+++.. +..+.+-...+.|..++..+++....+.
T Consensus       188 ~~I~~~d~dG~~-~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          188 NFIHKSNLDGTN-RQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TEEEEEETTSCS-CEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CEEEEEcCCCCc-eEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            889999986432 2333332233445666643 3344444456789999987776655554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.25  E-value=0.00068  Score=54.74  Aligned_cols=227  Identities=14%  Similarity=0.160  Sum_probs=112.6

Q ss_pred             CCCEEEEEe-CC-----CcEEEEecCCcceeee--eecCcccEEEEEECCCCCEEEEeeCC-----CcEEEEecCCCE--
Q 020798           84 DSRFLVSAS-DD-----KTIRLWDVPTATCLKT--LIGHTNYVFCVNFNPQSNMIVSGAFD-----ETVRIWDVKTGK--  148 (321)
Q Consensus        84 ~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~--  148 (321)
                      ++..++.|+ .+     ..+.+||+.+.+....  +.........+.  .++..++.|+.+     ..+.+||+.+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            344555565 22     3688888877653221  111111111222  245666777654     468899987654  


Q ss_pred             -E--EEEEeCCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec
Q 020798          149 -C--LKVLPAHSDPVTAVDFNRDGTMIVTSSYD-----GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL  220 (321)
Q Consensus       149 -~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  220 (321)
                       -  +..++........+.  .++.+++.|+.+     ..+.+||+.+.+-........ ......+...+++.++.|+.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~  168 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGLVVASGVIYCLGGY  168 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEEEEETTEEEEECCB
T ss_pred             eeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceEEEECCEEEEECCC
Confidence             2  222221111112222  256677777643     358889987654322111111 11111112236777777765


Q ss_pred             C-----CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC-----CeEEEEEcccceEE--EEecCCCC
Q 020798          221 D-----NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED-----SCVYLWELQSRKVV--QKLEGHTD  288 (321)
Q Consensus       221 d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~--~~~~~h~~  288 (321)
                      +     ..+.+||+.+.+....-.... +.......  ..++..++.|+.+     ..+.+||+.+.+-.  ..+.....
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~  245 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVA--LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC  245 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEE--EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence            4     468999988765443311111 11111111  1367777877754     46889999776432  22221111


Q ss_pred             CeEEEEecCCCceEEEEeecCC---ccEEEccccc
Q 020798          289 PVISVASHPTENIIASGALDND---RTVKIWTQEK  320 (321)
Q Consensus       289 ~v~~~~~~p~~~~l~s~~~d~~---~~i~iw~~~~  320 (321)
                      .-..+.+  ++.+++.|+.++.   ..|.+||.+.
T Consensus       246 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          246 YVGATVL--RGRLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             SCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred             ceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCC
Confidence            1122222  6778888876543   3567777653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.20  E-value=0.0037  Score=57.46  Aligned_cols=209  Identities=10%  Similarity=0.016  Sum_probs=120.5

Q ss_pred             cccEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEE-EEEeCCCcEEEE
Q 020798           23 LRAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL-VSASDDKTIRLW  100 (321)
Q Consensus        23 ~~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-~~~~~d~~i~iw  100 (321)
                      ...+..++|.+... ++++-...+.|..+++......    ......+.........|++.+.++.| ++-...+.|.+.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~----~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~  498 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  498 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC----cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence            34567889988544 4455555677777766432100    01111122123456678898776544 455667889999


Q ss_pred             ecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC--CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE-eC
Q 020798          101 DVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF--DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS-SY  177 (321)
Q Consensus       101 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~  177 (321)
                      ++........+.........|+++|.+..|+.+..  .+.|.+.++........+...-.....|++.+.+..|+.+ ..
T Consensus       499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~  578 (791)
T 3m0c_C          499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  578 (791)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence            98765433323333345789999998666665543  2678888886544433333333567889999776666555 45


Q ss_pred             CCeEEEEeCCCCceeeeeccC--CCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcEEEEE
Q 020798          178 DGLCRIWDASTGHCMKTLIDD--ENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       178 dg~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~~~~~  238 (321)
                      .+.|..+++..... ..+...  .-.....+++  .+..|+.+. ..+.|...|..+++.+..+
T Consensus       579 ~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          579 LHSISSIDVNGGNR-KTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TTEEEEEETTSCSC-EEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CCcEEEEecCCCce-EEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            67899999865432 222221  1122334555  333555444 5678888887776554444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.15  E-value=0.002  Score=52.51  Aligned_cols=218  Identities=10%  Similarity=0.065  Sum_probs=122.8

Q ss_pred             CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEE-eeCCCcEEEEecCC----CEEEEEEeCCCCCeeEEEEccC
Q 020798           94 DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS-GAFDETVRIWDVKT----GKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~----~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      ...|+..|+.+.+....+. .......++|++.++.|+. -...+.|+.+++..    ......+.........+++.+.
T Consensus         9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            3568888988765443332 3445678999987665554 45568899999875    2222223222234578899875


Q ss_pred             CC-EEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC--CeEEEEeCCCCcEEEEEeccCCce
Q 020798          169 GT-MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD--NTLRLWNYSTGKILKTYTGHTNSK  245 (321)
Q Consensus       169 ~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~  245 (321)
                      +. ++++-...+.|.++++.... ...+..........++++|.+..|+.+...  +.|..+++.. +....+.... ..
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~-~~  164 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTEN-IQ  164 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSS-CS
T ss_pred             CCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECC-CC
Confidence            54 44555677899999987543 223332223456789999876666555543  6888888753 3333332111 11


Q ss_pred             eEEEeEEEecCCeEEEEeCCCCeEEEEEcccce--EEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          246 YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK--VVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      ......+...++.++++-...+.|..+|+....  .+.........-.++++. .+.++++-.  ..+.|..++.
T Consensus       165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~--~~~~V~~~~~  236 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDI--INEAIFSANR  236 (316)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEET--TTTEEEEEET
T ss_pred             CceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEEC--CCCeEEEEeC
Confidence            112222333345666666777899999986432  222211122334677775 344455432  3456666653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.14  E-value=0.002  Score=52.12  Aligned_cols=163  Identities=4%  Similarity=0.008  Sum_probs=101.0

Q ss_pred             ccEEEEEECCCCCEEEEee-CCCcEEEEecCCCEEEEE-EeC----CCC--CeeEEEE---ccCCCEEEEEe--------
Q 020798          116 NYVFCVNFNPQSNMIVSGA-FDETVRIWDVKTGKCLKV-LPA----HSD--PVTAVDF---NRDGTMIVTSS--------  176 (321)
Q Consensus       116 ~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~-~~~----~~~--~v~~~~~---~~~~~~l~~~~--------  176 (321)
                      ....+++|++....|..++ ..+.|..||...+..... ++.    ...  .+..+.|   .|+++++++..        
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            3345678987666655555 789999999875543322 221    111  3578899   68877776543        


Q ss_pred             -----CCCeEEEEeCC---CCceeeeecc-----C-------CCCCeEEEEEccCCCEEEEEecC-CeEEEEeCCCCcEE
Q 020798          177 -----YDGLCRIWDAS---TGHCMKTLID-----D-------ENPPVSFVKFSPNGKFILVGTLD-NTLRLWNYSTGKIL  235 (321)
Q Consensus       177 -----~dg~i~~~d~~---~~~~~~~~~~-----~-------~~~~~~~~~~~~~g~~l~~~~~d-~~i~i~d~~~~~~~  235 (321)
                           .+..+..+|+.   +++.+.....     .       .......++..++|+..++++.. +.|..++.......
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~  172 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS  172 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence                 25778999998   6655433210     0       11236789999999999998888 88888886543222


Q ss_pred             EEEeccC--CceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce
Q 020798          236 KTYTGHT--NSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK  278 (321)
Q Consensus       236 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (321)
                      .-+....  .....+.-....+++..|++....|.|..+|+....
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv  217 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY  217 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc
Confidence            2221111  111112223345778777777669999999988543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.09  E-value=0.0046  Score=55.35  Aligned_cols=203  Identities=5%  Similarity=-0.015  Sum_probs=115.8

Q ss_pred             ccEEEEEECCCCCEEE-EEeCCCcEEEEecCCcceeeee-ecCcccEEEEEECCCCCEE-EEeeCCCcEEEEecCCCEEE
Q 020798           74 QGVSDLVFSSDSRFLV-SASDDKTIRLWDVPTATCLKTL-IGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVKTGKCL  150 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~  150 (321)
                      ..+..++|++.+..|+ +-...+.|..+++........+ ..--.....+++++.++.| ++-...+.|.+.++......
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            3467899998666555 4445677888888655321222 2222457789999866555 44456788999998754333


Q ss_pred             EEEeCCCCCeeEEEEccCCCEEEEEeC--CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEE
Q 020798          151 KVLPAHSDPVTAVDFNRDGTMIVTSSY--DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLW  227 (321)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~  227 (321)
                      ..+...-.....+++.|.+..|+.+..  .+.|...++... ....+..........+++++++..|..+. ..+.|..+
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            333233345678999997665555543  456666666532 22333333334567899999766666654 45789999


Q ss_pred             eCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEE
Q 020798          228 NYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ  281 (321)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  281 (321)
                      |+..........+.......+..    ..+..+.+-...+.|...|..+++...
T Consensus       199 ~~dG~~~~~~~~~~~~~P~gi~~----~~~~ly~td~~~~~V~~~d~~tg~~~~  248 (619)
T 3s94_A          199 NLDGTNRQAVVKGSLPHPFALTL----FEDILYWTDWSTHSILACNKYTGEGLR  248 (619)
T ss_dssp             SSSCCEEC---------CCCEEE----SSSEEEEECTTTCSEEEEESSSCCCCE
T ss_pred             cCCCCccEEEEeCCCCCceEEEE----eCCEEEEecCCCCEEEEEECCCCcccE
Confidence            88653322222111111122221    233556666677889888887765433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.08  E-value=0.0027  Score=51.34  Aligned_cols=227  Identities=11%  Similarity=0.103  Sum_probs=112.8

Q ss_pred             CEEEEEeC--CCcEEEEecCCcceeee--eecCcccEEEEEECCCCCEEEEeeCC----CcEEEEecCCCEEEEEEeCCC
Q 020798           86 RFLVSASD--DKTIRLWDVPTATCLKT--LIGHTNYVFCVNFNPQSNMIVSGAFD----ETVRIWDVKTGKCLKVLPAHS  157 (321)
Q Consensus        86 ~~l~~~~~--d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~  157 (321)
                      .+++.|+.  ...+.+||..+.+....  +.........+.+  ++..++.|+.+    ..+.+||+.+.+-...-....
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34555654  35788999887653221  1111111112222  45566777654    568889988775332221111


Q ss_pred             CCeeEEEEccCCCEEEEEeCC------CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec---------CC
Q 020798          158 DPVTAVDFNRDGTMIVTSSYD------GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL---------DN  222 (321)
Q Consensus       158 ~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---------d~  222 (321)
                      ......+..-++.+++.|+.+      ..+.+||+.+..-...-.... +.....+...+++.++.|+.         -.
T Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  169 (306)
T 3ii7_A           91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT-QRCSHGMVEANGLIYVCGGSLGNNVSGRVLN  169 (306)
T ss_dssp             CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCEESCTTTCEECC
T ss_pred             cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC-CcceeEEEEECCEEEEECCCCCCCCcccccc
Confidence            111111112256677777754      458889987764322111111 11111112236666666653         34


Q ss_pred             eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC-----CeEEEEEcccceE--EEEecCCCCCeEEEEe
Q 020798          223 TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED-----SCVYLWELQSRKV--VQKLEGHTDPVISVAS  295 (321)
Q Consensus       223 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~--~~~~~~h~~~v~~~~~  295 (321)
                      .+.+||+.+.+-...-.... ....-....  .++.+++.|+.+     ..+.+||..+.+-  +..+.........+.+
T Consensus       170 ~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  246 (306)
T 3ii7_A          170 SCEVYDPATETWTELCPMIE-ARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV  246 (306)
T ss_dssp             CEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE
T ss_pred             eEEEeCCCCCeEEECCCccc-hhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE
Confidence            58899988775433221111 111111111  267777777654     3588899877542  2222211122223333


Q ss_pred             cCCCceEEEEeecCC---ccEEEccccc
Q 020798          296 HPTENIIASGALDND---RTVKIWTQEK  320 (321)
Q Consensus       296 ~p~~~~l~s~~~d~~---~~i~iw~~~~  320 (321)
                        ++.+++.|+.++.   ..+.+||.+.
T Consensus       247 --~~~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          247 --GSIVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             --TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred             --CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence              6778888876533   3577777654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.0043  Score=53.47  Aligned_cols=206  Identities=12%  Similarity=0.098  Sum_probs=111.2

Q ss_pred             cEEEEEECCC-CCEEEEe-cCCceEEEeeccccCCCCCCCCCccccc-ccccccEEEEEE-------CCCCCEEEEEeCC
Q 020798           25 AISSVKFSHD-GRLLASS-SADKTLLTYSLSSISNSDSTPPSPLQKF-TGHEQGVSDLVF-------SSDSRFLVSASDD   94 (321)
Q Consensus        25 ~v~~~~~s~~-g~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~-------~~~~~~l~~~~~d   94 (321)
                      ....|+|+|. ...|..+ ...+.|++.|+......      .+... .........++|       ++++++|+.+...
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~------~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS------SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE------EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE------EEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence            3567899983 4444444 43456666665432110      00000 111235789999       9999966666554


Q ss_pred             C-------cEEEEecCC-ccee-----eeeecCcccEEEEEECCCC-CEEEEeeCCCcEEEEecC-------CCEE----
Q 020798           95 K-------TIRLWDVPT-ATCL-----KTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRIWDVK-------TGKC----  149 (321)
Q Consensus        95 ~-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~-------~~~~----  149 (321)
                      +       .|.+++... +...     ..+.. ......++++|++ .++++-..++.|+.+|+.       ++..    
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence            3       255665333 1211     11211 1234567889954 455566677889999987       4443    


Q ss_pred             -------EEE-EeC-CCCCeeEEEEccCCCE-EEEEeCCCeEEEEeC--CCCcee--eeeccC---CC-----------C
Q 020798          150 -------LKV-LPA-HSDPVTAVDFNRDGTM-IVTSSYDGLCRIWDA--STGHCM--KTLIDD---EN-----------P  201 (321)
Q Consensus       150 -------~~~-~~~-~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~--~~~~~~--~~~~~~---~~-----------~  201 (321)
                             ... +.. .......++|+|+++. +++-.....|+.++.  ..+...  ..+...   ..           .
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~  372 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN  372 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence                   111 222 1234578999999995 445556778888654  332210  111110   00           1


Q ss_pred             CeE-EEEEc-------cCCCEEEEEecCCeEEEEeCCCCcEEEEEe
Q 020798          202 PVS-FVKFS-------PNGKFILVGTLDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       202 ~~~-~~~~~-------~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~  239 (321)
                      ... .+...       ++|.++++=..+..|+.++ .++. +.++.
T Consensus       373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~Tia  416 (496)
T 3kya_A          373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYA  416 (496)
T ss_dssp             SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEE
T ss_pred             CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEe
Confidence            123 44554       4566665555678899998 4564 44443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.98  E-value=0.0045  Score=50.68  Aligned_cols=232  Identities=10%  Similarity=0.050  Sum_probs=116.1

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      ...+.++.|.| ++.++. +..+.+..- ......     -..+.....+...+..+.+.++++.++++ .++.|.. ..
T Consensus        79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~S-~DgG~t-----W~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~  148 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIV-GEPPIMLHT-TDGGQS-----WSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TK  148 (327)
T ss_dssp             CCEEEEEEEET-TEEEEE-EETTEEEEE-SSTTSS-----CEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ES
T ss_pred             CccEEEEEecC-CeEEEE-ECCCeEEEE-CCCCCC-----ceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-Ec
Confidence            34678888876 444444 445544331 111111     01111111122346777777777666554 4554432 12


Q ss_pred             CCcceeee-eecCcccEEEEEECCCCCEEEEeeCCCcEEEEec--CCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC
Q 020798          103 PTATCLKT-LIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV--KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG  179 (321)
Q Consensus       103 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  179 (321)
                      +.++.... ...+...+..+.+.|++..++.+...+..+-.|-  .+-+.+.  ......+..+.+.+++..+ .++.+|
T Consensus       149 DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G  225 (327)
T 2xbg_A          149 DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGG  225 (327)
T ss_dssp             STTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTT
T ss_pred             CCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCc
Confidence            22322222 2344556888999998877766544333333442  2222221  2234567889998888655 555678


Q ss_pred             eEEEEeCCCCceeeeeccC---CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc---CCceeEEEeEEE
Q 020798          180 LCRIWDASTGHCMKTLIDD---ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH---TNSKYCISSTFS  253 (321)
Q Consensus       180 ~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~  253 (321)
                      .+++.+...++.-..+...   ....+..+.+.+++..++++ .++.+ ++....++.-..+...   ....+.+.  +.
T Consensus       226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~--~~  301 (327)
T 2xbg_A          226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKIL--FF  301 (327)
T ss_dssp             EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEE--EE
T ss_pred             eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEE--EE
Confidence            7777643323322222111   12346778888887766654 46656 3444444433333211   12233332  22


Q ss_pred             ecCCeEEEEeCCCCeEEEEE
Q 020798          254 VTNGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       254 ~~~~~~l~~~~~dg~i~vwd  273 (321)
                       .++. +++++.+|.|.-++
T Consensus       302 -~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          302 -SPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             -ETTE-EEEECSTTEEEEEC
T ss_pred             -CCCc-eEEEcCCceEEEEc
Confidence             3455 44556788776554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.98  E-value=0.0042  Score=50.11  Aligned_cols=225  Identities=14%  Similarity=0.175  Sum_probs=109.7

Q ss_pred             CEEEEEeCC----CcEEEEecCCcceeee--eecCcccEEEEEECCCCCEEEEeeCC-----CcEEEEecCCCEEEEE--
Q 020798           86 RFLVSASDD----KTIRLWDVPTATCLKT--LIGHTNYVFCVNFNPQSNMIVSGAFD-----ETVRIWDVKTGKCLKV--  152 (321)
Q Consensus        86 ~~l~~~~~d----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~--  152 (321)
                      ..++.|+.+    ..+..||+.+.+....  +.........+.+  ++..++.|+.+     ..+.+||..+.+-...  
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            445555533    3577888876653221  1110111112222  45666777654     3588899887753322  


Q ss_pred             EeCCCCCeeEEEEccCCCEEEEEeCCC-----eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC------
Q 020798          153 LPAHSDPVTAVDFNRDGTMIVTSSYDG-----LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD------  221 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d------  221 (321)
                      ++...... +++. .++.+++.|+.++     .+.+||+.+.+-...........-..+ ...+++.++.|+.+      
T Consensus        95 ~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~  171 (302)
T 2xn4_A           95 MRDRRSTL-GAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGV-GVVGGLLYAVGGYDVASRQC  171 (302)
T ss_dssp             CSSCCBSC-EEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCEETTTTEE
T ss_pred             CCccccce-EEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceE-EEECCEEEEEeCCCCCCCcc
Confidence            22111111 2222 2567777777553     477888876543221111111111112 22366666666542      


Q ss_pred             -CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC-----CeEEEEEcccceEE--EEecCCCCCeEEE
Q 020798          222 -NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED-----SCVYLWELQSRKVV--QKLEGHTDPVISV  293 (321)
Q Consensus       222 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~--~~~~~h~~~v~~~  293 (321)
                       ..+.+||+.+.+-...-.... ........  ..++..++.|+.+     ..+.+||..+.+-.  ..+...... .++
T Consensus       172 ~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~  247 (302)
T 2xn4_A          172 LSTVECYNATTNEWTYIAEMST-RRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGV  247 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSS-CCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEE
T ss_pred             ccEEEEEeCCCCcEEECCCCcc-ccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeE
Confidence             458899988765433211111 11111111  1367788888754     36889998775432  222111111 122


Q ss_pred             EecCCCceEEEEeecCC---ccEEEccccc
Q 020798          294 ASHPTENIIASGALDND---RTVKIWTQEK  320 (321)
Q Consensus       294 ~~~p~~~~l~s~~~d~~---~~i~iw~~~~  320 (321)
                      +. .++.+++.|+.++.   ..|.+||.+.
T Consensus       248 ~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          248 CA-VNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             EE-ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             EE-ECCEEEEECCcCCCcccccEEEEcCCC
Confidence            22 26778888876532   3478888754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.96  E-value=0.00014  Score=66.08  Aligned_cols=210  Identities=10%  Similarity=0.020  Sum_probs=114.5

Q ss_pred             ccEEEEEECCCCCEEEEe-cCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCC-CEEEEEeCCCcEEEEe
Q 020798           24 RAISSVKFSHDGRLLASS-SADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS-RFLVSASDDKTIRLWD  101 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd  101 (321)
                      ..+..++|.+.+..|+.+ ...+.|..+++......  .  .....+.........|++.+.+ +++++-...+.|.+++
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~--~--~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d  481 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--S--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  481 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC---C--CCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEB
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCC--c--ceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEe
Confidence            345578898876665544 44567777776531100  0  0011111111234567888544 4445545677899999


Q ss_pred             cCCcceeeeeecCcccEEEEEECCCCCEEEEeeC--CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCE-EEEEeCC
Q 020798          102 VPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF--DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTM-IVTSSYD  178 (321)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d  178 (321)
                      +........+.........++++|.+..|+.+..  .+.|.++++........+...-.....|+|+|++.. +++-...
T Consensus       482 ~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~  561 (699)
T 1n7d_A          482 TKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  561 (699)
T ss_dssp             SSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTT
T ss_pred             cCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCC
Confidence            8765432222222234567889987665555443  267887776533221111122234567999987554 4555567


Q ss_pred             CeEEEEeCCCCceeeeeccC--CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEe
Q 020798          179 GLCRIWDASTGHCMKTLIDD--ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       179 g~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~  239 (321)
                      +.|..+|+.... ...+...  .......+++..+ .++++....+.|..+|..+++.+..+.
T Consensus       562 ~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          562 HSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             TEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             CeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            889999986432 2222221  1112233455443 344444556789999988887776654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.91  E-value=0.011  Score=52.87  Aligned_cols=202  Identities=7%  Similarity=-0.061  Sum_probs=122.3

Q ss_pred             ccEEEEEECCCCCEEE-EEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEE-EEeeCCCcEEEEecCCCEEEE
Q 020798           74 QGVSDLVFSSDSRFLV-SASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVKTGKCLK  151 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~  151 (321)
                      ..+..++|++.+..|+ +-..++.|..+++........+..-......+++.+.++.| ++-...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            3577899998665554 55667889989887654322222112345678888766555 444556789999886543222


Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEEeC--CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEe
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTSSY--DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWN  228 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d  228 (321)
                      .+...-.....+++.|....|+.+..  .+.|...++.... ...+.. .......+++++++..|..+. ..+.|..+|
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d  194 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSN  194 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence            23233345689999986555555543  5677777776433 223322 234567899999877776665 467899999


Q ss_pred             CCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEE
Q 020798          229 YSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK  282 (321)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  282 (321)
                      +..... ..+.........++.    ..+..+.+-...+.|...|..+++....
T Consensus       195 ~dG~~~-~v~~~~l~~P~glav----~~~~ly~tD~~~~~I~~~dk~tg~~~~~  243 (628)
T 4a0p_A          195 MLGLNR-EVIADDLPHPFGLTQ----YQDYIYWTDWSRRSIERANKTSGQNRTI  243 (628)
T ss_dssp             TTSCSC-EEEEECCSCEEEEEE----ETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             CCCCce-EEeeccCCCceEEEE----ECCEEEEecCCCCEEEEEECCCCCceEE
Confidence            865433 223222222233322    2356666666788899888766654333

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.91  E-value=0.0054  Score=49.65  Aligned_cols=226  Identities=10%  Similarity=0.090  Sum_probs=110.2

Q ss_pred             CCCEEEEEeCC----CcEEEEecCCcceeee--eecCcccEEEEEECCCCCEEEEeeC----C-----CcEEEEecCCCE
Q 020798           84 DSRFLVSASDD----KTIRLWDVPTATCLKT--LIGHTNYVFCVNFNPQSNMIVSGAF----D-----ETVRIWDVKTGK  148 (321)
Q Consensus        84 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~~wd~~~~~  148 (321)
                      ++..++.|+.+    ..+.+||..+.+....  +.........+.+  ++..++.|+.    +     ..+.+||+.+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            45556666532    3578888877653221  1100111111222  4556666665    2     457889988765


Q ss_pred             EEEE--EeCCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEeCCCCceeeeeccCC-CCCeEEEEEccCCCEEEEEec
Q 020798          149 CLKV--LPAHSDPVTAVDFNRDGTMIVTSSYD-----GLCRIWDASTGHCMKTLIDDE-NPPVSFVKFSPNGKFILVGTL  220 (321)
Q Consensus       149 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~  220 (321)
                      -...  ++........+.  -++.+++.|+.+     ..+.+||+.+.+-........ ...-..+.+  ++++++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            3222  111111112222  256667776643     357888887654222110011 111122222  6667777765


Q ss_pred             C-----CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC-----CeEEEEEcccceEEE--EecCCCC
Q 020798          221 D-----NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED-----SCVYLWELQSRKVVQ--KLEGHTD  288 (321)
Q Consensus       221 d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~h~~  288 (321)
                      +     ..+.+||+.+.+-...-.... +........  .++..++.|+.+     ..+.+||+.+.+-..  .+.....
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~  254 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS  254 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence            4     468999988765432211111 111111111  267777877654     458899987764321  1211111


Q ss_pred             CeEEEEecCCCceEEEEeecCC---ccEEEccccc
Q 020798          289 PVISVASHPTENIIASGALDND---RTVKIWTQEK  320 (321)
Q Consensus       289 ~v~~~~~~p~~~~l~s~~~d~~---~~i~iw~~~~  320 (321)
                      . .+++. -++.+++.|+.++.   ..|.+||.+.
T Consensus       255 ~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          255 A-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             S-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             c-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence            1 12222 25778888876532   3467777653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.86  E-value=0.0068  Score=48.79  Aligned_cols=189  Identities=16%  Similarity=0.174  Sum_probs=96.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCcc---eeee--eecCcccEEEEEECCCCCEEEEeeCC-----CcEEEEecCCCE
Q 020798           84 DSRFLVSASDD-----KTIRLWDVPTAT---CLKT--LIGHTNYVFCVNFNPQSNMIVSGAFD-----ETVRIWDVKTGK  148 (321)
Q Consensus        84 ~~~~l~~~~~d-----~~i~iwd~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~  148 (321)
                      +++.++.|+.+     ..+.+||+.+.+   ....  +.........+.+  ++..++.|+.+     ..+.+||+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56677777754     468899987765   3221  1111111112222  45666666643     358889988775


Q ss_pred             EEEEEeCCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC--
Q 020798          149 CLKVLPAHSDPVTAVDFNRDGTMIVTSSYD-----GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD--  221 (321)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d--  221 (321)
                      -...-+.........+...++.+++.|+.+     ..+.+||+.+..-...-.... +.....+...+++.++.|+.+  
T Consensus       140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~  218 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALLNDHIYVVGGFDGT  218 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCBCSS
T ss_pred             EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEECCEEEEEeCCCCC
Confidence            332221111111111122366677777654     458889987764322111111 111111222366777777654  


Q ss_pred             ---CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC-----CeEEEEEcccce
Q 020798          222 ---NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED-----SCVYLWELQSRK  278 (321)
Q Consensus       222 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~  278 (321)
                         ..+.+||+.+.+....-..... .......  ..++..++.|+.+     ..+.+||..+.+
T Consensus       219 ~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          219 AHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SBCCCEEEEETTTTEEEEECCCSSC-CBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             cccceEEEEeCCCCcEEECCCCCCc-ccceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence               4689999987764433211111 1111111  1367777777755     357788876653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.84  E-value=0.015  Score=52.09  Aligned_cols=158  Identities=9%  Similarity=-0.004  Sum_probs=88.3

Q ss_pred             ccEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC--CCcEEEE
Q 020798           24 RAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD--DKTIRLW  100 (321)
Q Consensus        24 ~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~--d~~i~iw  100 (321)
                      .....+++.+.+. +..+-...+.|.+.++.....      .  ......-.....|++.|.+.+|+.+..  .+.|...
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~------~--~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~  155 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR------K--VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERA  155 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------E--EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE------E--EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEE
Confidence            4577889988555 445556677888887654211      0  011122234678999887555554432  3567666


Q ss_pred             ecCCcceeeeeecCcccEEEEEECCCCCEEEEe-eCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC
Q 020798          101 DVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG-AFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG  179 (321)
Q Consensus       101 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  179 (321)
                      +++...........-.....++++++++.|+.+ ...+.|...|+..................+++..+ ..+.+-...+
T Consensus       156 ~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~  234 (619)
T 3s94_A          156 GMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTH  234 (619)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTC
T ss_pred             ECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCC
Confidence            765433222222233456789999977666555 45678888888654433222211222346676654 3444444567


Q ss_pred             eEEEEeCCCCc
Q 020798          180 LCRIWDASTGH  190 (321)
Q Consensus       180 ~i~~~d~~~~~  190 (321)
                      .|...|..+++
T Consensus       235 ~V~~~d~~tg~  245 (619)
T 3s94_A          235 SILACNKYTGE  245 (619)
T ss_dssp             SEEEEESSSCC
T ss_pred             EEEEEECCCCc
Confidence            78888876654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.76  E-value=0.033  Score=53.54  Aligned_cols=280  Identities=13%  Similarity=0.111  Sum_probs=141.6

Q ss_pred             cccEEEEEECCC------CCEEEEecC-CceEEEeeccccCCCCCCCCCcccccccccccEEEEEEC--CCCCEEEEEeC
Q 020798           23 LRAISSVKFSHD------GRLLASSSA-DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFS--SDSRFLVSASD   93 (321)
Q Consensus        23 ~~~v~~~~~s~~------g~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~--~~~~~l~~~~~   93 (321)
                      ...|+|+++.|.      ++++++|.. |+.++++++......      ..+.+.. .....++.+.  ....+|..|-.
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~------~~~~L~~-~~~p~si~l~~~~~~~~L~igl~  625 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL------HKEMLGG-EIIPRSILMTTFESSHYLLCALG  625 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE------EEEECCS-SCCEEEEEEEEETTEEEEEEEET
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE------EEEECCC-CCCCcEEEEEEeCCCcEEEEEeC
Confidence            457999999863      368999986 999999988642110      1111211 1122333322  23457889999


Q ss_pred             CCcEEEEecC--Ccceee---eeecCcccEEEEEECCCCC-EEEEeeCCCcEEEEecCCCEEEEEEeCCCCCe-eEEEEc
Q 020798           94 DKTIRLWDVP--TATCLK---TLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPV-TAVDFN  166 (321)
Q Consensus        94 d~~i~iwd~~--~~~~~~---~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v-~~~~~~  166 (321)
                      ||.+..+.++  ++....   ...|. .++.-..+...+. -+++++. ....++--+ ++.... +..-.++ ....|+
T Consensus       626 dG~l~~~~~d~~tg~l~d~r~~~LG~-~pv~L~~~~~~~~~~V~a~s~-rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~  701 (1158)
T 3ei3_A          626 DGALFYFGLNIETGLLSDRKKVTLGT-QPTVLRTFRSLSTTNVFACSD-RPTVIYSSN-HKLVFS-NVNLKEVNYMCPLN  701 (1158)
T ss_dssp             TSEEEEEEECTTTCCEEEEEEEECCS-SCCEEEEEESSSCEEEEEESS-SCEEEEESS-SSEEEE-EBSSSCCCEEEEEC
T ss_pred             CCeEEEEEEcCCCCccccceeEEcCC-CceEEEEEeeCCceeEEEECC-CCEEEEEcC-CceEEe-ccChHHhceEeccC
Confidence            9988666553  333221   12222 2332222322333 2333333 333333322 222211 1122223 233454


Q ss_pred             cC--CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC-----------------------
Q 020798          167 RD--GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD-----------------------  221 (321)
Q Consensus       167 ~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d-----------------------  221 (321)
                      ..  .+-++..+ ++.+++..+..........-.-...+..++++|..+.++++..+                       
T Consensus       702 se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (1158)
T 3ei3_A          702 SDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS  780 (1158)
T ss_dssp             CSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE
T ss_pred             cccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh
Confidence            32  12344444 34588876643221111111223456677777766655443311                       


Q ss_pred             --------------------------CeEEEEeCCCCcEEEEEeccCCc-eeEEEeEEEe-cCCeEEEEeC---------
Q 020798          222 --------------------------NTLRLWNYSTGKILKTYTGHTNS-KYCISSTFSV-TNGKYIVSGS---------  264 (321)
Q Consensus       222 --------------------------~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~~---------  264 (321)
                                                +.|+++|..+.+.+..+.-.... ..++...... ....+++.|+         
T Consensus       781 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~  860 (1158)
T 3ei3_A          781 SSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAE  860 (1158)
T ss_dssp             EEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSS
T ss_pred             hcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCC
Confidence                                      24777887777777666543322 2233222221 2246788775         


Q ss_pred             -CCCeEEEEEcccceE--EEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          265 -EDSCVYLWELQSRKV--VQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       265 -~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                       ..|.|++|++..+++  +++. ...++|++++-- .|++||+-+    ..|++|+.++
T Consensus       861 ~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~-~g~Lla~ig----~~l~vy~l~~  913 (1158)
T 3ei3_A          861 PKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEF-NGKLLASIN----STVRLYEWTT  913 (1158)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEE-TTEEEEEET----TEEEEEEECT
T ss_pred             CCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeee-CCEEEEEcC----CEEEEEECCC
Confidence             458899999975443  2222 235788888633 355555432    5799998864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.73  E-value=0.014  Score=48.39  Aligned_cols=225  Identities=11%  Similarity=0.066  Sum_probs=119.7

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcc-eeeeee---cCcccEEEEEECCC---CCEEEEeeC----C----CcE
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT-CLKTLI---GHTNYVFCVNFNPQ---SNMIVSGAF----D----ETV  139 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g~i  139 (321)
                      ....|+|.|+|++++ +..++.|.+++. .++ .+..+.   .-......++++|+   +..|+.+..    +    ..|
T Consensus        30 ~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            467899999998555 456699999973 343 222111   11245788999997   555544432    2    567


Q ss_pred             EEEecCCC-------EE-EEEEeCC-CCCeeEEEEccCCCEEEEEeC-------------CCeEEEEeCCCCc-------
Q 020798          140 RIWDVKTG-------KC-LKVLPAH-SDPVTAVDFNRDGTMIVTSSY-------------DGLCRIWDASTGH-------  190 (321)
Q Consensus       140 ~~wd~~~~-------~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-------------dg~i~~~d~~~~~-------  190 (321)
                      ..|+....       +. ...++.. ......++|.|+|.++++.+.             .|.|.-++....-       
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            77776543       11 1123311 123467999999987666432             1345555543210       


Q ss_pred             eeeeeccCCCCCeEEEEEcc-CCCEEEEEecCC---eEEEEeCCC--------C--------cEEEEE-eccCCceeEEE
Q 020798          191 CMKTLIDDENPPVSFVKFSP-NGKFILVGTLDN---TLRLWNYST--------G--------KILKTY-TGHTNSKYCIS  249 (321)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~d~---~i~i~d~~~--------~--------~~~~~~-~~~~~~~~~~~  249 (321)
                      ....+.... .....++|+| +|+++++-...+   .|.+.....        +        .++..+ ..+. ..  ..
T Consensus       188 ~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~-ap--~G  263 (354)
T 3a9g_A          188 NSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW-AP--SG  263 (354)
T ss_dssp             TCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC-CE--EE
T ss_pred             CCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc-CC--cc
Confidence            001111111 2245789999 676555432221   244432110        0        111122 1111 11  11


Q ss_pred             eEEE------ecCCeEEEEeCCCCeEEEEEcccc-eEE--EEe-cCCCCCeEEEEecCCCceEEEE
Q 020798          250 STFS------VTNGKYIVSGSEDSCVYLWELQSR-KVV--QKL-EGHTDPVISVASHPTENIIASG  305 (321)
Q Consensus       250 ~~~~------~~~~~~l~~~~~dg~i~vwd~~~~-~~~--~~~-~~h~~~v~~~~~~p~~~~l~s~  305 (321)
                      ..+.      ..+|.++++.-..+.|...++... +..  ..+ .+....+.++++.|||.++++.
T Consensus       264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            2221      146777777777788988888753 222  222 2334578999999999877775

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.67  E-value=0.014  Score=46.89  Aligned_cols=186  Identities=14%  Similarity=0.211  Sum_probs=94.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCcceeee--eecCcccEEEEEECCCCCEEEEeeCCC-----cEEEEecCCCEEEE
Q 020798           84 DSRFLVSASDD-----KTIRLWDVPTATCLKT--LIGHTNYVFCVNFNPQSNMIVSGAFDE-----TVRIWDVKTGKCLK  151 (321)
Q Consensus        84 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~  151 (321)
                      +++.++.|+.+     ..+.+||..+.+....  +.........+.+  ++..++.|+.++     .+.+||+.+.+-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            56677777654     3588899877653221  1111111112222  456666776543     47788887765332


Q ss_pred             E--EeCCCCCeeEEEEccCCCEEEEEeCC-------CeEEEEeCCCCceeeeeccCC-CCCeEEEEEccCCCEEEEEecC
Q 020798          152 V--LPAHSDPVTAVDFNRDGTMIVTSSYD-------GLCRIWDASTGHCMKTLIDDE-NPPVSFVKFSPNGKFILVGTLD  221 (321)
Q Consensus       152 ~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~d  221 (321)
                      .  ++..... .+++. -++.+++.|+.+       ..+.+||+.+..-........ ......+  ..++++++.|+.+
T Consensus       139 ~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~  214 (302)
T 2xn4_A          139 VAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG--VLNNLLYAVGGHD  214 (302)
T ss_dssp             ECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBS
T ss_pred             cCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE--EECCEEEEECCCC
Confidence            2  1111111 12222 256666666542       357889987654322111111 1111222  2366777777654


Q ss_pred             -----CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC-----eEEEEEcccce
Q 020798          222 -----NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS-----CVYLWELQSRK  278 (321)
Q Consensus       222 -----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~  278 (321)
                           ..+.+||+.+.+-...-.... ........  ..++..++.|+.++     .+.+||..+.+
T Consensus       215 ~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAWRQVADMNM-CRRNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCCEeeCCCCCC-ccccCeEE--EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence                 468999988765433221111 11111111  13677888887654     48888887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.55  E-value=0.023  Score=45.94  Aligned_cols=186  Identities=10%  Similarity=0.107  Sum_probs=93.3

Q ss_pred             CCCEEEEEeC----C-----CcEEEEecCCcceeee--eecCcccEEEEEECCCCCEEEEeeCC-----CcEEEEecCCC
Q 020798           84 DSRFLVSASD----D-----KTIRLWDVPTATCLKT--LIGHTNYVFCVNFNPQSNMIVSGAFD-----ETVRIWDVKTG  147 (321)
Q Consensus        84 ~~~~l~~~~~----d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~  147 (321)
                      +++.++.|+.    +     ..+.+||+.+.+....  +.........+.+  ++..++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5666677665    2     4688899877653221  1111111122222  45566666543     35788898876


Q ss_pred             EEEEE--EeCCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEeCCCCceeeeeccCC-CCCeEEEEEccCCCEEEEEe
Q 020798          148 KCLKV--LPAHSDPVTAVDFNRDGTMIVTSSYD-----GLCRIWDASTGHCMKTLIDDE-NPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       148 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~  219 (321)
                      +-...  ++........+.+  ++.+++.|+.+     ..+.+||+.+..-........ ......+.+  ++++++.|+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence            53322  1111111122222  56677777654     458888987654321110011 111122222  667777776


Q ss_pred             cC-----CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC-----CeEEEEEcccce
Q 020798          220 LD-----NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED-----SCVYLWELQSRK  278 (321)
Q Consensus       220 ~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~  278 (321)
                      .+     ..+.+||+.+.+-...-.... .........  .++++++.|+.+     ..+.+||..+.+
T Consensus       224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCccceEEEEeCCCCcEEECCCCCC-CccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            54     469999988765433211111 111111111  367777877754     357788876653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.51  E-value=0.025  Score=45.52  Aligned_cols=188  Identities=10%  Similarity=0.082  Sum_probs=94.9

Q ss_pred             CCCEEEEEeCC----CcEEEEecCCcceeee--eecCcccEEEEEECCCCCEEEEeeCC------CcEEEEecCCCEEEE
Q 020798           84 DSRFLVSASDD----KTIRLWDVPTATCLKT--LIGHTNYVFCVNFNPQSNMIVSGAFD------ETVRIWDVKTGKCLK  151 (321)
Q Consensus        84 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~  151 (321)
                      +++.++.|+.+    ..+.+||+.+.+....  +.........+.+  ++..++.|+.+      ..+.+||..+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            56677777754    5688899887653221  1111111112222  45666777654      458889988775332


Q ss_pred             EEeCCCCCe-eEEEEccCCCEEEEEeC---------CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC
Q 020798          152 VLPAHSDPV-TAVDFNRDGTMIVTSSY---------DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD  221 (321)
Q Consensus       152 ~~~~~~~~v-~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d  221 (321)
                      .-....... .+++. -++.+++.|+.         -..+.+||+.+..-...-.... +.....+..-++++++.|+.+
T Consensus       133 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~  210 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFVKDKIFAVGGQN  210 (306)
T ss_dssp             ECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCEE
T ss_pred             CCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEECCEEEEEeCCC
Confidence            211111111 12222 35666666653         3457889987764322111111 111111122266677776643


Q ss_pred             -----CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC-----CeEEEEEcccce
Q 020798          222 -----NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED-----SCVYLWELQSRK  278 (321)
Q Consensus       222 -----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~  278 (321)
                           ..+.+||+.+.+-...-... ..........  .++..++.|+.+     ..+.+||..+.+
T Consensus       211 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          211 GLGGLDNVEYYDIKLNEWKMVSPMP-WKGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             TTEEBCCEEEEETTTTEEEECCCCS-CCBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CCCCCceEEEeeCCCCcEEECCCCC-CCccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence                 46899998876543321111 1111111111  267778877744     468889987653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.49  E-value=0.031  Score=46.21  Aligned_cols=225  Identities=13%  Similarity=0.114  Sum_probs=116.0

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcc--eeeee----ecCcccEEEEEECCC---CCEEEEee-C-------CC
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTL----IGHTNYVFCVNFNPQ---SNMIVSGA-F-------DE  137 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~----~~~~~~v~~~~~~~~---~~~l~~~~-~-------dg  137 (321)
                      ....|+|.|+|++|+.+...|.|++++.....  .+..+    .........++++|+   +..|+.+. .       ..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            45789999999834445567999999853221  11111    111234678999996   45544432 2       23


Q ss_pred             cEEEEecCCC--E--EEE-EE---eC---CCCCeeEEEEccCCCEEEEEeCC-------------CeEEEEeCCCCc---
Q 020798          138 TVRIWDVKTG--K--CLK-VL---PA---HSDPVTAVDFNRDGTMIVTSSYD-------------GLCRIWDASTGH---  190 (321)
Q Consensus       138 ~i~~wd~~~~--~--~~~-~~---~~---~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~~~d~~~~~---  190 (321)
                      .|..++...+  .  ... .+   +.   .......++|.|+|.++++.+..             |.|.-++....-   
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~  178 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD  178 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence            5666666432  1  111 11   11   11223579999999766654432             355555554210   


Q ss_pred             ---------eeeeeccCCCCCeEEEEEcc-CCCEEEEEec-CC--eEEEEeCCCCc------------------------
Q 020798          191 ---------CMKTLIDDENPPVSFVKFSP-NGKFILVGTL-DN--TLRLWNYSTGK------------------------  233 (321)
Q Consensus       191 ---------~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~-d~--~i~i~d~~~~~------------------------  233 (321)
                               ....+... ......++|+| +|+++++-.. ++  .|.+.  ..+.                        
T Consensus       179 npf~~~~~~~~~i~a~G-~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i--~~G~nyGwp~~~~~~~~~~~~~~~~~~~  255 (353)
T 2g8s_A          179 NPFIKESGVRAEIWSYG-IRNPQGMAMNPWSNALWLNEHGPRGGDEINIP--QKGKNYGWPLATWGINYSGFKIPEAKGE  255 (353)
T ss_dssp             CTTTTSTTSCTTEEEEC-CSEEEEEEEETTTTEEEEEEECSBSCEEEECC--CTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred             CCCcCCCCCCccEEEEc-CcCccceEEECCCCCEEEEecCCCCCcEEeEe--ccCCcCCCCCccCCCCCCCCccCcccCC
Confidence                     01111111 12356789999 5655443221 11  23222  1110                        


Q ss_pred             -------EEEEEeccCCceeEEEeEEEe------cCCeEEEEeCCCCeEEEEEcccceEEEE---ecCCCCCeEEEEecC
Q 020798          234 -------ILKTYTGHTNSKYCISSTFSV------TNGKYIVSGSEDSCVYLWELQSRKVVQK---LEGHTDPVISVASHP  297 (321)
Q Consensus       234 -------~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~p  297 (321)
                             ++..+..+. .  .....+..      .++.++++.-..+.|...++..++....   +......+.++++.|
T Consensus       256 ~~~~~~~P~~~~~~~~-a--p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          256 IVAGTEQPVFYWKDSP-A--VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             SCTTSCCCSEEESSCC-C--EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred             CCCCccCCeEEeCCCc-C--cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence                   111111111 1  11122221      2477787777788888888876544322   222235789999999


Q ss_pred             CCceEEEE
Q 020798          298 TENIIASG  305 (321)
Q Consensus       298 ~~~~l~s~  305 (321)
                      ||.++++.
T Consensus       333 dG~lyv~t  340 (353)
T 2g8s_A          333 DGYLYVLT  340 (353)
T ss_dssp             TSCEEEEE
T ss_pred             CCcEEEEE
Confidence            99877753

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.47  E-value=0.018  Score=43.64  Aligned_cols=140  Identities=14%  Similarity=0.067  Sum_probs=78.4

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcce------eeee--ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC------LKTL--IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK  145 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  145 (321)
                      ..+.+++|+|+|.+.++  .+|.+.-.+..+...      ...+  .+... ...+.|.|+|.+.++  .||.|+-++-.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            35779999999986555  677776666544221      1111  01222 467889999988777  56998888753


Q ss_pred             CCEE-------EEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce-----eeeecc-CCCCCeEEEEEccCC
Q 020798          146 TGKC-------LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC-----MKTLID-DENPPVSFVKFSPNG  212 (321)
Q Consensus       146 ~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----~~~~~~-~~~~~~~~~~~~~~g  212 (321)
                      +...       ...-..--..+..+.+.|+|.+.++.  ++.++-....+...     ...... ..-.....+.|.++|
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            2110       01111112457899999999877666  77654333221110     011111 111123446688888


Q ss_pred             CEEEEEecCC
Q 020798          213 KFILVGTLDN  222 (321)
Q Consensus       213 ~~l~~~~~d~  222 (321)
                      ...++.  ++
T Consensus       194 ~l~~v~--~g  201 (236)
T 1tl2_A          194 TLFGVQ--GG  201 (236)
T ss_dssp             CEEEEE--TT
T ss_pred             cEEEEe--CC
Confidence            766655  55

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.43  E-value=0.024  Score=46.78  Aligned_cols=220  Identities=14%  Similarity=0.101  Sum_probs=102.6

Q ss_pred             CCCEEEEEeCC-CcEEEEecCC--cce--eeeee-cCcccEEEEEECCCCCEEEEeeC-C---------CcEEEEecCCC
Q 020798           84 DSRFLVSASDD-KTIRLWDVPT--ATC--LKTLI-GHTNYVFCVNFNPQSNMIVSGAF-D---------ETVRIWDVKTG  147 (321)
Q Consensus        84 ~~~~l~~~~~d-~~i~iwd~~~--~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~~wd~~~~  147 (321)
                      +++.++.|+.+ ..+.+||+..  .+.  +..+. ........+.+  ++..++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56666666543 4688888864  322  11111 01111112222  4556666665 2         46888998876


Q ss_pred             EEEEEEeCC-CCCeeEEEEccCCCEEEEEeCC---------------------------------------CeEEEEeCC
Q 020798          148 KCLKVLPAH-SDPVTAVDFNRDGTMIVTSSYD---------------------------------------GLCRIWDAS  187 (321)
Q Consensus       148 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---------------------------------------g~i~~~d~~  187 (321)
                      +-...-... .......+...++.+++.|+.+                                       ..+.+||+.
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~  176 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS  176 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence            532221111 1111111222567777888754                                       578899987


Q ss_pred             CCceeeeeccCCCCCe-EEEEEccCCCEEEEEec------CCeEEEEeC--CCCcEEEEEeccCCc--eeEEEeEEEecC
Q 020798          188 TGHCMKTLIDDENPPV-SFVKFSPNGKFILVGTL------DNTLRLWNY--STGKILKTYTGHTNS--KYCISSTFSVTN  256 (321)
Q Consensus       188 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~------d~~i~i~d~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~  256 (321)
                      +.+-...-........ ..+.. .++++++.|+.      ...+.+||+  .+.+-.. +.....+  .....  ....+
T Consensus       177 ~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~-~~~~~~~~~~~~~~--~~~~~  252 (357)
T 2uvk_A          177 TQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK-LAPVSSPDGVAGGF--AGISN  252 (357)
T ss_dssp             TTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEE-CCCSSTTTCCBSCE--EEEET
T ss_pred             CCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEe-cCCCCCCcccccce--EEEEC
Confidence            7543221111111111 12222 25666666653      245777876  4333222 1111111  11111  11236


Q ss_pred             CeEEEEeCCC----------------------CeEEEEEcccce--EEEEecCCCCCeEEEEecCCCceEEEEeecCCc
Q 020798          257 GKYIVSGSED----------------------SCVYLWELQSRK--VVQKLEGHTDPVISVASHPTENIIASGALDNDR  311 (321)
Q Consensus       257 ~~~l~~~~~d----------------------g~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~  311 (321)
                      +.+++.|+.+                      ..+.+||+.+.+  .+..+......-.++  ..++++++.|+.+.++
T Consensus       253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~  329 (357)
T 2uvk_A          253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGG  329 (357)
T ss_dssp             TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGG
T ss_pred             CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCC
Confidence            7777777632                      247788987653  333333222221222  2467888888876544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.42  E-value=0.034  Score=44.99  Aligned_cols=211  Identities=12%  Similarity=0.126  Sum_probs=102.2

Q ss_pred             EEEEeCCCcEEEEecCCcceeee-eecCcccEEEEEECCCCCEEEEeeC----C-------CcEEEEecCCCEEEEE--E
Q 020798           88 LVSASDDKTIRLWDVPTATCLKT-LIGHTNYVFCVNFNPQSNMIVSGAF----D-------ETVRIWDVKTGKCLKV--L  153 (321)
Q Consensus        88 l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~~wd~~~~~~~~~--~  153 (321)
                      ++.|+  ..+.+||..+.+.... +..............++..++.|+.    +       ..+..||..+.+-...  +
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            44455  5688999888764321 1111112222233456677777773    1       1277888887653221  1


Q ss_pred             eCCCCCeeEEEEccCCCEEEEEeCC--------CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec-C---
Q 020798          154 PAHSDPVTAVDFNRDGTMIVTSSYD--------GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL-D---  221 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-d---  221 (321)
                      +..... .+++. -++.+++.|+.+        ..+.+||+.+.+-....... .+.....+...+++.++.|+. +   
T Consensus        86 p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~  162 (315)
T 4asc_A           86 PSPRCL-FGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP-YVVYGHTVLSHMDLVYVIGGKGSDRK  162 (315)
T ss_dssp             SSCEES-CEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEECCBCTTSC
T ss_pred             Ccchhc-eeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC-CcccceeEEEECCEEEEEeCCCCCCc
Confidence            111111 11222 255666666632        35888898765422111001 111111122246667777765 2   


Q ss_pred             --CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC-----eEEEEEcccceE--EEEecCCCCCeEE
Q 020798          222 --NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS-----CVYLWELQSRKV--VQKLEGHTDPVIS  292 (321)
Q Consensus       222 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~--~~~~~~h~~~v~~  292 (321)
                        ..+.+||+.+.+-...-.... +...-...  ..++..++.|+.++     .+.+||..+.+-  +..+......-..
T Consensus       163 ~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  239 (315)
T 4asc_A          163 CLNKMCVYDPKKFEWKELAPMQT-ARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL  239 (315)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSS-CCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             ccceEEEEeCCCCeEEECCCCCC-chhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence              468999988765433211111 11111111  12677777776544     578889876542  2222211111122


Q ss_pred             EEecCCCceEEEEeec
Q 020798          293 VASHPTENIIASGALD  308 (321)
Q Consensus       293 ~~~~p~~~~l~s~~~d  308 (321)
                      +.+  ++.+++.|+.+
T Consensus       240 ~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          240 VSL--VGTLYAIGGFA  253 (315)
T ss_dssp             EEE--TTEEEEEEEEE
T ss_pred             EEE--CCEEEEECCcc
Confidence            222  56778888764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.36  E-value=0.042  Score=44.56  Aligned_cols=224  Identities=15%  Similarity=0.182  Sum_probs=107.0

Q ss_pred             EEEEEeCCCcEEEEecCCcceeee-eecCcccEEEEEECCCCCEEEEeeC----CC-------cEEEEecCCCEEEEE--
Q 020798           87 FLVSASDDKTIRLWDVPTATCLKT-LIGHTNYVFCVNFNPQSNMIVSGAF----DE-------TVRIWDVKTGKCLKV--  152 (321)
Q Consensus        87 ~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~~wd~~~~~~~~~--  152 (321)
                      .++.|+.  .+..||..+.+.... ...............++..++.|+.    ++       .+..||..+.+-...  
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            3444443  378899887764331 1111111122233456677777773    11       177788877653321  


Q ss_pred             EeCCCCCeeEEEEccCCCEEEEEeCC-------CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec-----
Q 020798          153 LPAHSDPVTAVDFNRDGTMIVTSSYD-------GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL-----  220 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-----  220 (321)
                      ++..... .+++. -++.+++.|+.+       ..+.+||+.+.+-....... .+.....+...+++.++.|+.     
T Consensus        96 ~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A           96 LPSARCL-FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP-IKVYGHNVISHNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             BSSCBCS-CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS-SCEESCEEEEETTEEEEECCEESSSC
T ss_pred             CCccccc-cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC-CcccccEEEEECCEEEEEcCCCCCCC
Confidence            2211111 12222 256677777753       24778888765432211001 111111122246777777664     


Q ss_pred             -CCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC-----CeEEEEEcccceE--EEEecCCCCCeEE
Q 020798          221 -DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED-----SCVYLWELQSRKV--VQKLEGHTDPVIS  292 (321)
Q Consensus       221 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~--~~~~~~h~~~v~~  292 (321)
                       -..+.+||+.+.+-...-.... +........  .++..++.|+.+     ..+.+||..+.+-  +..+......- +
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~  248 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-S  248 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-E
T ss_pred             ccceEEEEcCCCCEEEECCCCCC-CcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-E
Confidence             2358999988765433221111 111111111  357777777543     3467888876542  22222111111 2


Q ss_pred             EEecCCCceEEEEeecC------------CccEEEccccc
Q 020798          293 VASHPTENIIASGALDN------------DRTVKIWTQEK  320 (321)
Q Consensus       293 ~~~~p~~~~l~s~~~d~------------~~~i~iw~~~~  320 (321)
                      ++. .++.+++.|+.+.            ...+.+||.+.
T Consensus       249 ~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  287 (318)
T 2woz_A          249 LVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK  287 (318)
T ss_dssp             EEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred             EEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence            222 2567778777542            13477777653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.33  E-value=0.082  Score=47.39  Aligned_cols=200  Identities=10%  Similarity=0.006  Sum_probs=118.2

Q ss_pred             ccEEEEEECCCCCEEE-EEeCCCcEEEEecCCcceeeeeec------CcccEEEEEECCCCCEE-EEeeCCCcEEEEecC
Q 020798           74 QGVSDLVFSSDSRFLV-SASDDKTIRLWDVPTATCLKTLIG------HTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVK  145 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~  145 (321)
                      ..+..++|.+.+..|+ +-...+.|+.+++........+..      ....+..+++.+.++.| .+-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            4477899988655555 444567788888764332222221      12357789999876655 455667889999886


Q ss_pred             CCEEEEEEeCCCCCeeEEEEccC-CCEEEEEeCCC--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec-C
Q 020798          146 TGKCLKVLPAHSDPVTAVDFNRD-GTMIVTSSYDG--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL-D  221 (321)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-d  221 (321)
                      .......+........++++.|. |.++.+-....  .|...++.. .....+....-.....+++++.++.|..+.. .
T Consensus       420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG-~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~  498 (628)
T 4a0p_A          420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG-TEREVLFFSGLSKPIALALDSRLGKLFWADSDL  498 (628)
T ss_dssp             SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC-CCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC
Confidence            44322333334456789999994 54444433332  465555543 3233333333344688999998777776654 5


Q ss_pred             CeEEEEeCCCCcEEEEEe-ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceE
Q 020798          222 NTLRLWNYSTGKILKTYT-GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV  279 (321)
Q Consensus       222 ~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (321)
                      +.|..+++.... .+.+. ........++.    ..+..+.+-...+.|...|..+++.
T Consensus       499 ~~I~~~~~dG~~-r~~~~~~~~~~P~glav----~~~~ly~tD~~~~~i~~~~k~~G~~  552 (628)
T 4a0p_A          499 RRIESSDLSGAN-RIVLEDSNILQPVGLTV----FENWLYWIDKQQQMIEKIDMTGREG  552 (628)
T ss_dssp             TEEEEEETTSCS-CEEEECSSCSCEEEEEE----ETTEEEEEETTTTEEEEEETTSSSC
T ss_pred             CEEEEEeCCCCc-eEEEEcCCCCCcEEEEE----ECCEEEEEECCCCeEEEEECcCCCC
Confidence            789999985433 33332 22222233322    2466666767777888888766543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.31  E-value=0.053  Score=44.79  Aligned_cols=148  Identities=11%  Similarity=0.117  Sum_probs=75.2

Q ss_pred             cccEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC---CCEEEEE-eC----
Q 020798           23 LRAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD---SRFLVSA-SD----   93 (321)
Q Consensus        23 ~~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~~~l~~~-~~----   93 (321)
                      ......++|.|+|+ +++ +...+.|.+++.......... ..+ ........+...|+++|+   +..|+.+ +.    
T Consensus        17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~-~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLS-GVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             ESSEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCB-SCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEec-CCc-ccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            34567899999999 554 455788888764321110000 000 011122456789999995   4444433 22    


Q ss_pred             ---CCcEEEEecCCc--c--eeeee-ec------CcccEEEEEECCCCCEEEEeeC-------------CCcEEEEecCC
Q 020798           94 ---DKTIRLWDVPTA--T--CLKTL-IG------HTNYVFCVNFNPQSNMIVSGAF-------------DETVRIWDVKT  146 (321)
Q Consensus        94 ---d~~i~iwd~~~~--~--~~~~~-~~------~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~~wd~~~  146 (321)
                         ...|..|++...  +  ....+ ..      .......++|.|+|.++++.+.             .|.|..++...
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence               235666665432  1  11111 11      0111346899999966555433             24566666542


Q ss_pred             CE------------EEEEE-eCCCCCeeEEEEcc-CCCEEEE
Q 020798          147 GK------------CLKVL-PAHSDPVTAVDFNR-DGTMIVT  174 (321)
Q Consensus       147 ~~------------~~~~~-~~~~~~v~~~~~~~-~~~~l~~  174 (321)
                      .-            ....+ ..+ .....++|.| +++++++
T Consensus       174 ~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          174 EIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence            10            01111 122 2357899999 5655444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.23  E-value=0.065  Score=44.17  Aligned_cols=154  Identities=13%  Similarity=0.207  Sum_probs=88.8

Q ss_pred             ccEEEEEECCCCCEEEEEe------------CCCcEEEEecCCc--cee-eeeec-----CcccEEEEEECC--CCC-EE
Q 020798           74 QGVSDLVFSSDSRFLVSAS------------DDKTIRLWDVPTA--TCL-KTLIG-----HTNYVFCVNFNP--QSN-MI  130 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l  130 (321)
                      .+..++...|+|..+++++            .+|.|.++|..+.  +.. ..+.+     ..-....+.+.+  ++. +|
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            3556788888876555442            6899999998742  211 12222     112455666654  343 34


Q ss_pred             EEe-eC--CCcEEEEecCC--CEE--EEEEeCC-CCCeeEEEEccCCCEEEEEe-----------------CCCeEEEEe
Q 020798          131 VSG-AF--DETVRIWDVKT--GKC--LKVLPAH-SDPVTAVDFNRDGTMIVTSS-----------------YDGLCRIWD  185 (321)
Q Consensus       131 ~~~-~~--dg~i~~wd~~~--~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~~~d  185 (321)
                      +.+ ..  +..|.+|++..  +..  +..+... -....++.+.++|+++++..                 ..|.+.-+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            444 22  45677777654  222  2223221 23467899999998777654                 124455555


Q ss_pred             CCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCC
Q 020798          186 ASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST  231 (321)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~  231 (321)
                      ..  + ...+.. .-...+.++|+||++.+.++. ..+.|..|++..
T Consensus       210 ~~--~-~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          210 PN--D-VRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             TT--C-CEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CC--e-EEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            42  2 222221 123467899999998887765 568899999863

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.17  E-value=0.068  Score=43.22  Aligned_cols=191  Identities=10%  Similarity=0.066  Sum_probs=92.0

Q ss_pred             CCCCCEEEEEeC-----C------CcEEEEecCCcceeee--eecCcccEEEEEECCCCCEEEEeeCC--------CcEE
Q 020798           82 SSDSRFLVSASD-----D------KTIRLWDVPTATCLKT--LIGHTNYVFCVNFNPQSNMIVSGAFD--------ETVR  140 (321)
Q Consensus        82 ~~~~~~l~~~~~-----d------~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~  140 (321)
                      ..+++.++.|+.     .      ..+.+||..+.+....  +.........+.+  ++..++.|+.+        ..+.
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEE
Confidence            346777777773     1      1277888877653221  1100011111222  45566666632        4588


Q ss_pred             EEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC-C-----CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCE
Q 020798          141 IWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-D-----GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKF  214 (321)
Q Consensus       141 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  214 (321)
                      +||..+.+-...-+.........+...++.+++.|+. +     ..+.+||+.+..-....... .+.....+..-+++.
T Consensus       121 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i  199 (315)
T 4asc_A          121 CYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRI  199 (315)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEE
T ss_pred             EECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEE
Confidence            8998876532211111111111122245667777765 2     36888998765422211001 111111122236677


Q ss_pred             EEEEecCC-----eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC--------------eEEEEEcc
Q 020798          215 ILVGTLDN-----TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS--------------CVYLWELQ  275 (321)
Q Consensus       215 l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~vwd~~  275 (321)
                      ++.|+.++     .+.+||+.+.+-...-.... +.......  ..++..++.|+.++              .+.+||..
T Consensus       200 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~  276 (315)
T 4asc_A          200 IVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ-ERSSLSLV--SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEE  276 (315)
T ss_dssp             EEEEEECSSSEEEEEEEEETTTTEEEEECCCSS-CCBSCEEE--EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred             EEEeccCCCCccceEEEEECCCCeEEECCCCCC-cccceeEE--EECCEEEEECCccccCcCCccccccccCcEEEecCC
Confidence            77777654     58899988765433221111 11111111  13567777776532              36677776


Q ss_pred             cce
Q 020798          276 SRK  278 (321)
Q Consensus       276 ~~~  278 (321)
                      +.+
T Consensus       277 ~~~  279 (315)
T 4asc_A          277 EKK  279 (315)
T ss_dssp             TTE
T ss_pred             CCh
Confidence            653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.15  E-value=0.08  Score=43.64  Aligned_cols=197  Identities=12%  Similarity=0.140  Sum_probs=109.1

Q ss_pred             cEEEEEECCCCCEEEEec------------CCceEEEeeccccCCCCCCCCCccccccc-----ccccEEEEEECC--CC
Q 020798           25 AISSVKFSHDGRLLASSS------------ADKTLLTYSLSSISNSDSTPPSPLQKFTG-----HEQGVSDLVFSS--DS   85 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~------------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~i~~~~~~~--~~   85 (321)
                      +.-.++..|+|..+++++            .+|.|.++|..+...    ....+ .+.+     ..-....+.+.+  ++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~----~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg  125 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP----AVSEL-EIIGNTLDISSFNPHGISTFIDDDN  125 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSC----CEEEC-EEECSSCCGGGCCEEEEEEEECTTC
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC----ceEEE-EccCCCCCcCceeeeeeEEEECCCC
Confidence            444566789887766662            688899998753211    01111 1111     122445566544  44


Q ss_pred             C-EEEEE-eC--CCcEEEEecCCcc----eeeeeecC-cccEEEEEECCCCCEEEEee-----------------CCCcE
Q 020798           86 R-FLVSA-SD--DKTIRLWDVPTAT----CLKTLIGH-TNYVFCVNFNPQSNMIVSGA-----------------FDETV  139 (321)
Q Consensus        86 ~-~l~~~-~~--d~~i~iwd~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----------------~dg~i  139 (321)
                      . +|+.+ ..  +.++.+|++....    .+..+.+. -...+.+.+.++|+++++..                 ..|.+
T Consensus       126 ~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v  205 (355)
T 3sre_A          126 TVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV  205 (355)
T ss_dssp             CEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred             cEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence            3 34433 22  4678888765432    12223221 23467888999998777654                 12455


Q ss_pred             EEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEeCCC-Ccee-eeeccCCCCCeEEEEEcc-CCCEE
Q 020798          140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS-SYDGLCRIWDAST-GHCM-KTLIDDENPPVSFVKFSP-NGKFI  215 (321)
Q Consensus       140 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~-~~~~-~~~~~~~~~~~~~~~~~~-~g~~l  215 (321)
                      +.+|.  ++.. .+...-...+.++|+|+++.++.+ +..+.|..|++.. +... .+.. ........+++++ +|++.
T Consensus       206 yr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          206 TYYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             EEECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEE
T ss_pred             EEEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEE
Confidence            55554  3222 222222345789999999876665 4678999999853 3221 1122 2234567889999 59887


Q ss_pred             EEEecC-CeEEEEeCC
Q 020798          216 LVGTLD-NTLRLWNYS  230 (321)
Q Consensus       216 ~~~~~d-~~i~i~d~~  230 (321)
                      +++..+ +.|..|+..
T Consensus       282 va~~~~g~~v~~~~P~  297 (355)
T 3sre_A          282 VGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEESCHHHHHSCCTT
T ss_pred             EEecCCceEEEEECCC
Confidence            766544 344445543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.11  E-value=0.088  Score=43.45  Aligned_cols=106  Identities=11%  Similarity=0.144  Sum_probs=58.8

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC---CCEEEEE-eCC----
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD---SRFLVSA-SDD----   94 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~~~l~~~-~~d----   94 (321)
                      ......++|.|+|+++++ ..++.|.+++ ....    .....+..+.........|+++|+   +..|+.+ ...    
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~----~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR-EGRL----STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE-TTEE----EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE-CCCc----cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            345678999999996555 4568888876 2110    000000011122356789999998   4445443 322    


Q ss_pred             -CcEEEEecCCcc-----ee-eeee---cCcccEEEEEECCCCCEEEEee
Q 020798           95 -KTIRLWDVPTAT-----CL-KTLI---GHTNYVFCVNFNPQSNMIVSGA  134 (321)
Q Consensus        95 -~~i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~  134 (321)
                       +.|..++.....     .+ ..+.   +.......++|.|+|..+++.+
T Consensus       104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence             567778776432     11 1122   1111235789999997766643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.08  E-value=0.034  Score=46.62  Aligned_cols=108  Identities=21%  Similarity=0.289  Sum_probs=73.7

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcce------------eeeeec------CcccEEEEEECCC---CCEEEEe
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC------------LKTLIG------HTNYVFCVNFNPQ---SNMIVSG  133 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------~~~~~~------~~~~v~~~~~~~~---~~~l~~~  133 (321)
                      .|..+..+|+|++||..+. ..|.|-.++.+..            .+.+.-      ....|..+.|+|-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            5778999999999987754 5788888763210            111211      2466999999995   4678888


Q ss_pred             eCCCcEEEEecCCC--EEEEEEe---------CCCCCeeEEEEccCCCEEEEEe--CCCeEEEE
Q 020798          134 AFDETVRIWDVKTG--KCLKVLP---------AHSDPVTAVDFNRDGTMIVTSS--YDGLCRIW  184 (321)
Q Consensus       134 ~~dg~i~~wd~~~~--~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~  184 (321)
                      ..|+.|++||+...  ++. .+.         .....|.+++|.+++-.|...+  ..|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999999999752  111 221         2235688999998776666644  77877643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.07  E-value=0.17  Score=46.06  Aligned_cols=222  Identities=11%  Similarity=0.126  Sum_probs=109.8

Q ss_pred             CCCCEEEEEeCC----CcEEEEecCCcceeeee-e------cC-cccEEEEEECCCCCEEEEeeCC------CcEEEEec
Q 020798           83 SDSRFLVSASDD----KTIRLWDVPTATCLKTL-I------GH-TNYVFCVNFNPQSNMIVSGAFD------ETVRIWDV  144 (321)
Q Consensus        83 ~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~-~------~~-~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~  144 (321)
                      .++..++.|+.+    ..+.+||..+++....- .      .. ......+.+..++..++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777643    46888998776533221 1      01 1112223332256677777654      34788888


Q ss_pred             CCCEEEEE--EeCCCCCeeEEEEccCCCEEEEEeCCC--eEEEEeCCCCceeeeec----cCCCCCeEEEEEccC-CCEE
Q 020798          145 KTGKCLKV--LPAHSDPVTAVDFNRDGTMIVTSSYDG--LCRIWDASTGHCMKTLI----DDENPPVSFVKFSPN-GKFI  215 (321)
Q Consensus       145 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~-g~~l  215 (321)
                      .+.+-...  ++.... -.+++...++.+++.|+.++  .+.+||+.+..-.....    .........+.+..+ ++.+
T Consensus       476 ~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            87643221  111111 12333324777888887654  68899988754322110    001111223445544 6677


Q ss_pred             EEEec--C-----CeEEEEeCCCCc------EEEEEeccCCceeEEEeEEEecCCeEEEEeCC--------CCeEEEEEc
Q 020798          216 LVGTL--D-----NTLRLWNYSTGK------ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSE--------DSCVYLWEL  274 (321)
Q Consensus       216 ~~~~~--d-----~~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------dg~i~vwd~  274 (321)
                      +.|+.  +     +.+.+||+.+.+      ................... ..++..++.|+.        ...+.+||.
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  633 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY-ITPRKLLIVGGTSPSGLFDRTNSIISLDP  633 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE-EETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE-eCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence            77765  2     468999988776      2221111001111111111 223777777774        345899999


Q ss_pred             ccceEEEEecCCCC------Ce---EEEEecCCCceEEEEee
Q 020798          275 QSRKVVQKLEGHTD------PV---ISVASHPTENIIASGAL  307 (321)
Q Consensus       275 ~~~~~~~~~~~h~~------~v---~~~~~~p~~~~l~s~~~  307 (321)
                      .+.+-. .+.....      +.   .+.+..+++++++.||.
T Consensus       634 ~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          634 LSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             TTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred             CCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence            876532 1211100      00   23444456677777764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.05  E-value=0.099  Score=43.05  Aligned_cols=141  Identities=14%  Similarity=0.031  Sum_probs=62.3

Q ss_pred             CcEEEEecCCCEEEEEEeCCC-CCe-eEEEEccCCCEEEEEeC------CCeEEEEeC--CCCceeeeeccCCC-CCeEE
Q 020798          137 ETVRIWDVKTGKCLKVLPAHS-DPV-TAVDFNRDGTMIVTSSY------DGLCRIWDA--STGHCMKTLIDDEN-PPVSF  205 (321)
Q Consensus       137 g~i~~wd~~~~~~~~~~~~~~-~~v-~~~~~~~~~~~l~~~~~------dg~i~~~d~--~~~~~~~~~~~~~~-~~~~~  205 (321)
                      ..+.+||+.+.+-...-+... ... .+++. -++.+++.|+.      ...+..||+  .+..-......... .....
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            468899988775332211111 111 22332 25566666653      235667776  33321111000111 11111


Q ss_pred             EEEccCCCEEEEEecC----------------------CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEe
Q 020798          206 VKFSPNGKFILVGTLD----------------------NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG  263 (321)
Q Consensus       206 ~~~~~~g~~l~~~~~d----------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  263 (321)
                      .+...++++++.|+.+                      ..+.+||+.+.+-...-........... .  ..+++.++.|
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~--~~~~~i~v~G  323 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS-L--PWNNSLLIIG  323 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE-E--EETTEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee-E--EeCCEEEEEe
Confidence            1233466677777632                      2578899876543322111111111111 1  1367777777


Q ss_pred             CCCC------eEEEEEcccceEEE
Q 020798          264 SEDS------CVYLWELQSRKVVQ  281 (321)
Q Consensus       264 ~~dg------~i~vwd~~~~~~~~  281 (321)
                      +.++      .|.++++++.+.+.
T Consensus       324 G~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          324 GETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             EECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             eeCCCCCEeeeEEEEEEcCcEeEe
Confidence            7543      35556777766544

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.025  Score=46.18  Aligned_cols=194  Identities=10%  Similarity=0.075  Sum_probs=100.2

Q ss_pred             CEEEEEeCCCcEEEEecCCcceeeeeecC-cccEEEEEE--CC-CCCEEEEe-eCCCcEEEEecCCCEEEEEEeC----C
Q 020798           86 RFLVSASDDKTIRLWDVPTATCLKTLIGH-TNYVFCVNF--NP-QSNMIVSG-AFDETVRIWDVKTGKCLKVLPA----H  156 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~----~  156 (321)
                      ..++.++.||.|.-.|..+++..-.+... ..++....-  .+ ++..++.. ..||.|+.++..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46788999999999999998877665432 112211110  01 22333333 5899999999888754433321    1


Q ss_pred             CCCeeE---EEE-c----cCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCC------eEEEEEc-----cCCCEEEE
Q 020798          157 SDPVTA---VDF-N----RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPP------VSFVKFS-----PNGKFILV  217 (321)
Q Consensus       157 ~~~v~~---~~~-~----~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~------~~~~~~~-----~~g~~l~~  217 (321)
                      ..++..   ... .    ..+..+++++.+|.+...|+++|+.+..+.......      ..+....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            122211   000 0    135578899999999999999998877664332110      0011110     12356777


Q ss_pred             EecCCeEEEEeCCCCcE----EEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEE
Q 020798          218 GTLDNTLRLWNYSTGKI----LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQ  281 (321)
Q Consensus       218 ~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  281 (321)
                      +..+..+.+.+ ++++.    ...+.................++.+ +.++.||.|.-+|..+++.+.
T Consensus       171 g~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            77777777766 44431    1111111000000000000013444 335677777777777776655

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.86  E-value=0.048  Score=41.32  Aligned_cols=141  Identities=11%  Similarity=0.094  Sum_probs=76.6

Q ss_pred             ccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccccccccc--------EEEEEECCCCCEEEEEeCCC
Q 020798           24 RAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQG--------VSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------i~~~~~~~~~~~l~~~~~d~   95 (321)
                      ..+..++|+|+|.+.++  .++.+.-.+..        .... ..+-+-...        ...+.|.|+|.+.++  .||
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~--------t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG  107 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPP--------THDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKD  107 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCC--------CSTT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETT
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCC--------CCCc-ccccccccEecccccccceEEEECCCCCEEEe--CCC
Confidence            36779999999997776  56655333211        0000 111111222        378899999987766  569


Q ss_pred             cEEEEecCCccee------eee-ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE------EEEEEe-CCCCCee
Q 020798           96 TIRLWDVPTATCL------KTL-IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK------CLKVLP-AHSDPVT  161 (321)
Q Consensus        96 ~i~iwd~~~~~~~------~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~------~~~~~~-~~~~~v~  161 (321)
                      .|.-++..+....      ..+ ..-=..+..+.+.|+|.+.+..  |+.++-...-++.      ....+. .....-.
T Consensus       108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr  185 (236)
T 1tl2_A          108 KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK  185 (236)
T ss_dssp             EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred             EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence            9888876442211      011 1111356899999999877766  7775433221110      001111 2222334


Q ss_pred             EEEEccCCCEEEEEeCCCeE
Q 020798          162 AVDFNRDGTMIVTSSYDGLC  181 (321)
Q Consensus       162 ~~~~~~~~~~l~~~~~dg~i  181 (321)
                      .+.|.+++.+.++.  ++.+
T Consensus       186 ~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          186 FLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEEECTTSCEEEEE--TTEE
T ss_pred             EEEECCCCcEEEEe--CCeE
Confidence            46688888766555  6643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.83  E-value=0.18  Score=42.40  Aligned_cols=143  Identities=15%  Similarity=0.145  Sum_probs=89.9

Q ss_pred             CCCCEEEEEeCCCcEEEEecCCcceeeeeecC----cccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE----------
Q 020798           83 SDSRFLVSASDDKTIRLWDVPTATCLKTLIGH----TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK----------  148 (321)
Q Consensus        83 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----------  148 (321)
                      .+|..++.+ .++.||.-++......+.+...    -..+..+..+|+|++|+..+. ..|.+..+..+.          
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence            445545443 2366776676644333333322    224677999999999988764 578888775221          


Q ss_pred             --EEEEEeC------CCCCeeEEEEccC---CCEEEEEeCCCeEEEEeCCCCce-eeeec--------cCCCCCeEEEEE
Q 020798          149 --CLKVLPA------HSDPVTAVDFNRD---GTMIVTSSYDGLCRIWDASTGHC-MKTLI--------DDENPPVSFVKF  208 (321)
Q Consensus       149 --~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~-~~~~~--------~~~~~~~~~~~~  208 (321)
                        ..+.+..      ...+|..+.|+|-   +..|++-..|+.|++||+..... ...+.        ......+.+++|
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence              1122221      2567999999995   45899999999999999975221 11111        111245788999


Q ss_pred             ccCCCEEEEEe--cCCeEEEE
Q 020798          209 SPNGKFILVGT--LDNTLRLW  227 (321)
Q Consensus       209 ~~~g~~l~~~~--~d~~i~i~  227 (321)
                      .+++-.|.+.+  ..|.|.-.
T Consensus       188 g~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCCcEEEEEecCCCCCEEEE
Confidence            99887777755  67777554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.74  E-value=0.19  Score=41.49  Aligned_cols=197  Identities=15%  Similarity=0.118  Sum_probs=101.7

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccc---cccccccEEEEEECCC---CCEEEEEeC---
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQK---FTGHEQGVSDLVFSSD---SRFLVSASD---   93 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~---~~~h~~~i~~~~~~~~---~~~l~~~~~---   93 (321)
                      ......++|.|+|+++++ ..++.|.+++....        ..+..   ..........|+++|+   +..|+.+..   
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G~--------~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~   98 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPSGK--------KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFA   98 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECSSCE--------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCCc--------eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence            456678999999985555 45588887752211        11111   1122356889999997   444444332   


Q ss_pred             -C----CcEEEEecCCc--c-----ee-eeeec-CcccEEEEEECCCCCEEEEeeC-------------CCcEEEEecCC
Q 020798           94 -D----KTIRLWDVPTA--T-----CL-KTLIG-HTNYVFCVNFNPQSNMIVSGAF-------------DETVRIWDVKT  146 (321)
Q Consensus        94 -d----~~i~iwd~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~~wd~~~  146 (321)
                       +    +.|..|+....  .     .+ ..+.. .......++|.|+|.++++.+.             .|.|..++...
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG  178 (354)
T 3a9g_A           99 EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG  178 (354)
T ss_dssp             GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred             CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence             3    56777776543  1     11 11211 1112356899999987776432             24555555432


Q ss_pred             C---------EEEEEEeCCCCCeeEEEEcc-CCCEEEEEeCCC---eEEEEeCCC--------C--------ceeeeecc
Q 020798          147 G---------KCLKVLPAHSDPVTAVDFNR-DGTMIVTSSYDG---LCRIWDAST--------G--------HCMKTLID  197 (321)
Q Consensus       147 ~---------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg---~i~~~d~~~--------~--------~~~~~~~~  197 (321)
                      .         ..+. ...+. ....++|+| +++++++-....   .|.+.....        +        .....+ .
T Consensus       179 ~~p~~npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~  255 (354)
T 3a9g_A          179 RPPADNPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDT-G  255 (354)
T ss_dssp             CCCTTSSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-T
T ss_pred             CCCCCCCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeec-C
Confidence            1         0111 11232 346799999 666555433222   244332111        0        000111 0


Q ss_pred             CCCCCeEEEEEc-------cCCCEEEEEecCCeEEEEeCCC
Q 020798          198 DENPPVSFVKFS-------PNGKFILVGTLDNTLRLWNYST  231 (321)
Q Consensus       198 ~~~~~~~~~~~~-------~~g~~l~~~~~d~~i~i~d~~~  231 (321)
                      ........+++.       .+|.++++....+.|..+++..
T Consensus       256 ~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          256 SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            112235667773       5676666655667788888764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.55  E-value=0.25  Score=40.51  Aligned_cols=226  Identities=14%  Similarity=0.135  Sum_probs=120.2

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcce--eeee----ecCcccEEEEEECCC---CCEEEEe---eCCCcEEE
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC--LKTL----IGHTNYVFCVNFNPQ---SNMIVSG---AFDETVRI  141 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~dg~i~~  141 (321)
                      .....|+|.|+|+++++--..|.|++++...++.  +..+    ..-......++++|+   +..|+..   ..+..|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            3467899999999777665589999998655442  1111    112345789999995   3444432   23455666


Q ss_pred             EecCCC----------EEE-EEEeC-CCCCeeEEEEccCCCEEEEEeC-------------CCeEEEEeCCCCc------
Q 020798          142 WDVKTG----------KCL-KVLPA-HSDPVTAVDFNRDGTMIVTSSY-------------DGLCRIWDASTGH------  190 (321)
Q Consensus       142 wd~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~~~d~~~~~------  190 (321)
                      |....+          +.+ ..++. .......+.|.|+|.++++.+.             .|.|.-.+....-      
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            655431          111 12321 1123457999999987776542             2333333433210      


Q ss_pred             -eeeeeccCCCCCeEEEEEccCCCEEEEEe-cCC--eEEEEeCCCCc------------------EEEEEeccCCceeEE
Q 020798          191 -CMKTLIDDENPPVSFVKFSPNGKFILVGT-LDN--TLRLWNYSTGK------------------ILKTYTGHTNSKYCI  248 (321)
Q Consensus       191 -~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~--~i~i~d~~~~~------------------~~~~~~~~~~~~~~~  248 (321)
                       ....+...+ .....++|+|+|.+.++-. .++  .|.+.  ..+.                  ++..+..+....  .
T Consensus       192 ~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i--~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap--~  266 (347)
T 3das_A          192 PGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAI--KPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP--S  266 (347)
T ss_dssp             TTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEE--CTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE--E
T ss_pred             CCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEE--cCCCEecCCcccCCCCCccccCCcEecCCCCCCC--c
Confidence             001111122 2245689999887665432 222  23332  1111                  111121111111  1


Q ss_pred             EeEEEecCCeEEEEeCCCCeEEEEEcccceE----EEEecCCCCCeEEEEecCCCceEEEEe
Q 020798          249 SSTFSVTNGKYIVSGSEDSCVYLWELQSRKV----VQKLEGHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      ...+.  ++..+...-..+.|....+.....    ...+.+...++.+|+..|||.++++-.
T Consensus       267 G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          267 GIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             ceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            22222  567676666666676666654432    223444456899999999998877753

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.40  E-value=0.28  Score=39.54  Aligned_cols=190  Identities=13%  Similarity=0.095  Sum_probs=90.8

Q ss_pred             CCCCCEEEEEeC----CC-------cEEEEecCCcceeee--eecCcccEEEEEECCCCCEEEEeeCC-------CcEEE
Q 020798           82 SSDSRFLVSASD----DK-------TIRLWDVPTATCLKT--LIGHTNYVFCVNFNPQSNMIVSGAFD-------ETVRI  141 (321)
Q Consensus        82 ~~~~~~l~~~~~----d~-------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~~  141 (321)
                      ..+++.++.|+.    ++       .+.+||..+.+....  +.........+.+  ++..++.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence            456777777773    11       177788876653221  1110111112222  45566666653       24778


Q ss_pred             EecCCCEEEEEEeCCCCCe-eEEEEccCCCEEEEEeC------CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCE
Q 020798          142 WDVKTGKCLKVLPAHSDPV-TAVDFNRDGTMIVTSSY------DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKF  214 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  214 (321)
                      ||+.+.+-...-+...... .+++. .++.+++.|+.      -..+.+||+.+.+-...........-..+. .-+++.
T Consensus       132 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i  209 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA-IHKGKI  209 (318)
T ss_dssp             EETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEE
T ss_pred             EeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEE-EECCEE
Confidence            8887765332211111111 12222 45666677653      235888998876432211111111111122 236677


Q ss_pred             EEEEecC-----CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC--------------CeEEEEEcc
Q 020798          215 ILVGTLD-----NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED--------------SCVYLWELQ  275 (321)
Q Consensus       215 l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------g~i~vwd~~  275 (321)
                      ++.|+.+     ..+.+||+.+.+-...-.... ........  ..++.+++.|+.+              ..+.+||..
T Consensus       210 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~  286 (318)
T 2woz_A          210 VIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD  286 (318)
T ss_dssp             EEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETT
T ss_pred             EEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCC
Confidence            7777643     357889988765433211111 11111111  2357777777654              347778877


Q ss_pred             cce
Q 020798          276 SRK  278 (321)
Q Consensus       276 ~~~  278 (321)
                      +.+
T Consensus       287 ~~~  289 (318)
T 2woz_A          287 KKE  289 (318)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.36  E-value=0.57  Score=42.56  Aligned_cols=196  Identities=9%  Similarity=0.071  Sum_probs=97.5

Q ss_pred             CCCCEEEEeeCC----CcEEEEecCCCEEEEEE-e-----CCCC-CeeEEEEcc-CCCEEEEEeCC------CeEEEEeC
Q 020798          125 PQSNMIVSGAFD----ETVRIWDVKTGKCLKVL-P-----AHSD-PVTAVDFNR-DGTMIVTSSYD------GLCRIWDA  186 (321)
Q Consensus       125 ~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~-~-----~~~~-~v~~~~~~~-~~~~l~~~~~d------g~i~~~d~  186 (321)
                      .++..++.|+.+    ..+.+||..+++-...- +     .... .-.+++..+ ++..++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            345666777643    45788888776532221 1     1111 112333333 67777777643      24778888


Q ss_pred             CCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCC--eEEEEeCCCCcEEEEEec--cCCceeEEE-eEEEecCCeEEE
Q 020798          187 STGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN--TLRLWNYSTGKILKTYTG--HTNSKYCIS-STFSVTNGKYIV  261 (321)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~--~i~i~d~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~l~  261 (321)
                      .+..-...-.......-..+....+++.++.|+.++  .+.+||..+.+....-..  ...+..... ..+...++..++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            765322111001111111233324788888887654  699999887654332210  000111111 122222266777


Q ss_pred             EeCC--C-----CeEEEEEcccceE-----EEEecC---CCCCeEEEEecCCCceEEEEeecCC------ccEEEccccc
Q 020798          262 SGSE--D-----SCVYLWELQSRKV-----VQKLEG---HTDPVISVASHPTENIIASGALDND------RTVKIWTQEK  320 (321)
Q Consensus       262 ~~~~--d-----g~i~vwd~~~~~~-----~~~~~~---h~~~v~~~~~~p~~~~l~s~~~d~~------~~i~iw~~~~  320 (321)
                      .|+.  +     ..+.+||+.+..-     -..+..   ....-.+++...++.+++.||.+.+      ..|.+||.+.
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            7765  2     3588999877651     111111   1111122333333778888876432      3578887753

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.35  E-value=0.3  Score=41.84  Aligned_cols=106  Identities=13%  Similarity=0.170  Sum_probs=57.8

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccc------cccccEEEEEECCC---CCEEEEE-e
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFT------GHEQGVSDLVFSSD---SRFLVSA-S   92 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~------~h~~~i~~~~~~~~---~~~l~~~-~   92 (321)
                      ......++|.|+|+++++-...+.|.+++.....      ...+..+.      ....+...|+|+|+   +..|+.+ +
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~------~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS------VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC------EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc------EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            3456799999999977776544567666432110      00111111      13467889999995   4444433 2


Q ss_pred             C------------CCcEEEEecCCc-------ceee-eee-cCcccEEEEEECCCCCEEEEee
Q 020798           93 D------------DKTIRLWDVPTA-------TCLK-TLI-GHTNYVFCVNFNPQSNMIVSGA  134 (321)
Q Consensus        93 ~------------d~~i~iwd~~~~-------~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~  134 (321)
                      .            ...|..++....       +.+. .+. ........++|.|||.++++.+
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            2            134555554321       1111 111 1112367899999998777644

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.02  E-value=0.63  Score=39.83  Aligned_cols=103  Identities=13%  Similarity=0.146  Sum_probs=60.1

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCccee--eeeec------CcccEEEEEECCC---CCEEEEeeC--------
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL--KTLIG------HTNYVFCVNFNPQ---SNMIVSGAF--------  135 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~~~--------  135 (321)
                      ....|+|.|+|+++++-...+.|.+++..+++..  ..+..      .......++++|+   +..|+.+..        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            4578999999997776544457888876544321  11211      1345678999996   555544332        


Q ss_pred             -----CCcEEEEecCCC--E-----EEE-EEeC-CCCCeeEEEEccCCCEEEEEeC
Q 020798          136 -----DETVRIWDVKTG--K-----CLK-VLPA-HSDPVTAVDFNRDGTMIVTSSY  177 (321)
Q Consensus       136 -----dg~i~~wd~~~~--~-----~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~  177 (321)
                           ...|..++...+  +     .+. .++. .......++|.|+|.++++.+.
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                 234555654321  1     111 1221 1234678999999987776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.84  E-value=1.1  Score=43.75  Aligned_cols=198  Identities=9%  Similarity=0.190  Sum_probs=101.6

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC-EEEEEEeCC-
Q 020798           79 LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG-KCLKVLPAH-  156 (321)
Q Consensus        79 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~-  156 (321)
                      .-.+|..+.+|.=. ..++.|+|+++...+++..-.. .|.-=.|-.+.. |+-.+ +..|+-|++... .+.+.+..| 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence            45678877666543 6789999998887666654333 333334443333 32222 357999998642 333333333 


Q ss_pred             ---CCCeeEEEEccCCCEEEEEe-------CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEc--cCCCEEEE-Ee---c
Q 020798          157 ---SDPVTAVDFNRDGTMIVTSS-------YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFS--PNGKFILV-GT---L  220 (321)
Q Consensus       157 ---~~~v~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~l~~-~~---~  220 (321)
                         ...|..-..+++.++++..+       -.|.+.+|..+.+.  .....+|......+...  +....+++ +.   .
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~  224 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc--chhhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence               34566666677888765433       24677888765432  11111111111111110  11111222 11   1


Q ss_pred             CCeEEEEeCCCC---c------EEEE-EeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEe
Q 020798          221 DNTLRLWNYSTG---K------ILKT-YTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       221 d~~i~i~d~~~~---~------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      .+.++|.++...   .      .+.. ++........+....+ +....+..-+.-|.|.+||+.++..+..-
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs-~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-EKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEec-cccCEEEEEecCceEEEEecccchhhhhc
Confidence            257888887432   1      0111 1111112233333333 34455666788899999999998876543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.21  E-value=1.8  Score=39.63  Aligned_cols=231  Identities=12%  Similarity=0.142  Sum_probs=122.6

Q ss_pred             cccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeee-ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEE
Q 020798           73 EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTL-IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLK  151 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  151 (321)
                      ...|.+|.-..+|.+ -.|+.+| +..||-...+..... ......|.++....++ .|..++.+| +..||..+.+...
T Consensus        21 ~n~V~~I~qD~~G~l-WigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~   96 (758)
T 3ott_A           21 ASVVSCFLQDSEGLI-WIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ   96 (758)
T ss_dssp             CCCEEEEEECTTSCE-EEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred             cceEEEEEECCCCCE-EEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence            356888888888764 4466676 666774332211100 1123458887777665 455555555 7889987765322


Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec---cCCCCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI---DDENPPVSFVKFSPNGKFILVGTLDNTLRLWN  228 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d  228 (321)
                      ........|.++.. .++ .+..++.+ -+..+|..+++......   ......+..+....+|.+.+ ++.+ -|..|+
T Consensus        97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~  171 (758)
T 3ott_A           97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYI  171 (758)
T ss_dssp             CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEE
T ss_pred             cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCc
Confidence            11111234666653 345 45556665 57788877654322100   11223477777777777654 4544 477888


Q ss_pred             CCCCcEEEEEeccCC---ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEE
Q 020798          229 YSTGKILKTYTGHTN---SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASG  305 (321)
Q Consensus       229 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  305 (321)
                      ..+++.. .+.....   ....+...+...++..|..|+. +-|..+|..+++...........|.++....++.+.+..
T Consensus       172 ~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT  249 (758)
T 3ott_A          172 PSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT  249 (758)
T ss_dssp             TTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE
T ss_pred             cCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe
Confidence            7766533 2221110   1111333333344444444443 457788877654322111123468888888787776643


Q ss_pred             eecCCccEEEccc
Q 020798          306 ALDNDRTVKIWTQ  318 (321)
Q Consensus       306 ~~d~~~~i~iw~~  318 (321)
                        + +| +.+++.
T Consensus       250 --~-~G-l~~~~~  258 (758)
T 3ott_A          250 --D-NG-LYVYHN  258 (758)
T ss_dssp             --T-TE-EEEECC
T ss_pred             --C-Cc-eeEEec
Confidence              2 23 555554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.77  E-value=0.14  Score=41.91  Aligned_cols=116  Identities=11%  Similarity=0.202  Sum_probs=69.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEE--c-cCCCEEEEE-ecCCeEEEEeCCCCcEEEEEeccC--C
Q 020798          170 TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKF--S-PNGKFILVG-TLDNTLRLWNYSTGKILKTYTGHT--N  243 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~-~~g~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~--~  243 (321)
                      ..++.++.||.+.-+|..+|+..-++......++....-  . .++..++.. ..||.|..++..+|.....+....  .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            478889999999999999988766654331111111100  0 123333333 579999999998885544332211  0


Q ss_pred             -ceeEEEeEEEe------cCCeEEEEeCCCCeEEEEEcccceEEEEecC
Q 020798          244 -SKYCISSTFSV------TNGKYIVSGSEDSCVYLWELQSRKVVQKLEG  285 (321)
Q Consensus       244 -~~~~~~~~~~~------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  285 (321)
                       ...........      ..+..+++|+.+|.+...|+++++.+..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence             00000000000      1466788999999999999999999888753

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.61  E-value=1.4  Score=35.33  Aligned_cols=174  Identities=9%  Similarity=0.075  Sum_probs=94.0

Q ss_pred             EECCCCCEEEEEeCC--------------CcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEee----CCCcEEE
Q 020798           80 VFSSDSRFLVSASDD--------------KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA----FDETVRI  141 (321)
Q Consensus        80 ~~~~~~~~l~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~~  141 (321)
                      -+++++++|+.+...              ..|+..++...+.. .+..  ..  ...+++++++|+-..    ....|+.
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--CC--ccEEEEeCCEEEEEeecCCCCceEEE
Confidence            457888888766443              35666777665432 2221  11  225677888887665    3445666


Q ss_pred             EecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC-CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec
Q 020798          142 WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY-DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL  220 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  220 (321)
                      .++.... ...+..+..    .+++|+++.|+-.+. ...|...++..+.. +.+...   .. ...+.|++.+|+-...
T Consensus       134 ~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~-~~l~~~---~~-~~~~~P~g~~iy~t~~  203 (302)
T 3s25_A          134 IRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE-ALFYDC---NC-YKPVVLDDTNVYYMDV  203 (302)
T ss_dssp             EETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE-EEEECS---CE-EEEEEEETTEEEEEEG
T ss_pred             EECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE-EEEeCC---Cc-cceeeecCCEEEEEEc
Confidence            6665433 333433332    346778887776654 67888888876543 233221   12 2346688888877654


Q ss_pred             C--CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEe--CCCCeEEEEEccc
Q 020798          221 D--NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG--SEDSCVYLWELQS  276 (321)
Q Consensus       221 d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~  276 (321)
                      .  ..|..-++.... ...+..  ...   . .+ .+++.+|.-+  ...+.|..-++..
T Consensus       204 ~~~~~I~~~~ldG~~-~~~Lt~--~~~---~-~~-~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          204 NRDNAIVHVNINNPN-PVVLTE--ANI---E-HY-NVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             GGTTEEEEECSSSCC-CEECSC--SCE---E-EE-EEETTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCcEEEEEECCCCC-eEEEeC--CCc---c-eE-EECCCEEEEEECCCCcEEEEEECCC
Confidence            3  356666665443 222321  111   1 12 2345555533  3345666666654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.48  E-value=1.7  Score=35.64  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=48.1

Q ss_pred             EEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeee--e---ccCCCCCeEEEEEccC---CCEEEEE-e--c
Q 020798          152 VLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKT--L---IDDENPPVSFVKFSPN---GKFILVG-T--L  220 (321)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~---~~~~~~~~~~~~~~~~---g~~l~~~-~--~  220 (321)
                      .+...-...+.++|.|+|+++++--..|.|++++...+.....  +   ..........++++|+   +.+|.+. +  .
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            3333345668999999998766665589999998765543211  1   1122345678999995   3344432 2  3


Q ss_pred             CCeEEEEeCCC
Q 020798          221 DNTLRLWNYST  231 (321)
Q Consensus       221 d~~i~i~d~~~  231 (321)
                      ++.|.-|.+..
T Consensus       106 ~~~v~R~~~~~  116 (347)
T 3das_A          106 DNRIVRMLYDE  116 (347)
T ss_dssp             SEEEEEEEBCT
T ss_pred             CCEEEEEEeCC
Confidence            45566665543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.83  E-value=1.4  Score=38.48  Aligned_cols=72  Identities=11%  Similarity=0.131  Sum_probs=49.7

Q ss_pred             eeEEEEccCCCEEEEEe-CCCeEEEEeCCCCce-----------eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 020798          160 VTAVDFNRDGTMIVTSS-YDGLCRIWDASTGHC-----------MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW  227 (321)
Q Consensus       160 v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~  227 (321)
                      ...+..+|||++++.++ -+.++.++|.+.-..           ...-....+......+|+++|....+-..|.+|.-|
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkW  404 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKW  404 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEE
Confidence            46788999999888776 478999999874211           000011223446678999999555555689999999


Q ss_pred             eCCC
Q 020798          228 NYST  231 (321)
Q Consensus       228 d~~~  231 (321)
                      ++..
T Consensus       405 ni~~  408 (638)
T 3sbq_A          405 NMEE  408 (638)
T ss_dssp             EHHH
T ss_pred             eccH
Confidence            9865

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.44  E-value=3.2  Score=35.17  Aligned_cols=210  Identities=12%  Similarity=0.250  Sum_probs=118.4

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCC-CEEEEEEeCC
Q 020798           78 DLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT-GKCLKVLPAH  156 (321)
Q Consensus        78 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~  156 (321)
                      +.-.+|..+.+|.=. ...+.|+|+++...++...-...-++- .|-.+ +.|+-.+ +..|+-|++.. ..+.+.+..|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfW-kWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFW-KWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEE-EEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEE-EecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence            456788888777654 678999999998877776544433332 33332 3343333 35799999864 3455555544


Q ss_pred             C----CCeeEEEEccCCCEEEEEe-------CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCC-----CEEEEEec
Q 020798          157 S----DPVTAVDFNRDGTMIVTSS-------YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNG-----KFILVGTL  220 (321)
Q Consensus       157 ~----~~v~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~l~~~~~  220 (321)
                      .    ..|..-..+++.++++..+       -.|.+.+|..+.+.  ......|..  ....+-.+|     ..+..+..
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~--sQ~ieGhaa--~F~~~~~~g~~~~~~lf~fa~r  221 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAA--SFAQFKMEGNAEESTLFCFAVR  221 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC--EEEECCSEE--EEEEEECTTCSSEEEEEEEEEC
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc--cchheeeee--eeEEEecCCCCCCceEEEEEEe
Confidence            3    3455666678888766443       23567888776432  222223221  222222222     12222322


Q ss_pred             ---CCeEEEEeCCCC--------cE-EEE-EeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC
Q 020798          221 ---DNTLRLWNYSTG--------KI-LKT-YTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT  287 (321)
Q Consensus       221 ---d~~i~i~d~~~~--------~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~  287 (321)
                         .+.++|.++...        +. +.. +.........+....+ +....+..-+.-|.|.+||+.++.++..-+--.
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs-~kygviyviTK~G~i~lyDleTgt~i~~nrIs~  300 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-EKHDVVFLITKYGYIHLYDLETGTCIYMNRISG  300 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE-TTTTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec-ccCCEEEEEecCceEEEEecccceeeeeecccC
Confidence               268888887432        11 111 1111223344544444 345566667888999999999999887655445


Q ss_pred             CCeEEEEec
Q 020798          288 DPVISVASH  296 (321)
Q Consensus       288 ~~v~~~~~~  296 (321)
                      ++|.-.+.+
T Consensus       301 ~~iF~t~~~  309 (494)
T 1bpo_A          301 ETIFVTAPH  309 (494)
T ss_dssp             SCEEEEEEE
T ss_pred             CceEEeccc
Confidence            555444433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.32  E-value=6.8  Score=38.64  Aligned_cols=233  Identities=12%  Similarity=0.164  Sum_probs=118.4

Q ss_pred             ECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc-ceee
Q 020798           31 FSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA-TCLK  109 (321)
Q Consensus        31 ~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~  109 (321)
                      .+|..+.+|.=. ...+.++++......        ..+.- ...|.--.|-.+. .|+..+ +..|.-|++... .+.+
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~kl--------ks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k  140 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKM--------KAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVK  140 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhh--------ccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHH
Confidence            466666666543 677888877543221        11111 1233333454333 343332 457999999643 3333


Q ss_pred             eeecC----cccEEEEEECCCCCEEEEee-------CCCcEEEEecCCCEEEEEEeCCCCCeeEEEEc--cC-CCEEEEE
Q 020798          110 TLIGH----TNYVFCVNFNPQSNMIVSGA-------FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFN--RD-GTMIVTS  175 (321)
Q Consensus       110 ~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~  175 (321)
                      -+..|    ...|..-..+++.++++..|       -.|.+.+|..+.+. .+.+.+|......+...  +. ...++.+
T Consensus       141 ~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~  219 (1630)
T 1xi4_A          141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFA  219 (1630)
T ss_pred             HHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEE
Confidence            33333    34455666678888765432       34778888775432 33344554433332221  11 1233333


Q ss_pred             eC---CCeEEEEeCCCC---c-ee-ee----eccC--CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc
Q 020798          176 SY---DGLCRIWDASTG---H-CM-KT----LIDD--ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH  241 (321)
Q Consensus       176 ~~---dg~i~~~d~~~~---~-~~-~~----~~~~--~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  241 (321)
                      ..   .+.+++.++...   . .. +.    ....  ...-.-.+..++.-..+..-+.-|.|.+||+.++..+..-.-.
T Consensus       220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris  299 (1630)
T 1xi4_A          220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS  299 (1630)
T ss_pred             EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc
Confidence            22   367888887432   1 10 11    1111  0111234667777677888889999999999999877554333


Q ss_pred             CCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceE
Q 020798          242 TNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV  279 (321)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (321)
                      ..++.. + +...+.+. +++....|.|.-..+.....
T Consensus       300 ~~~iF~-~-~~~~~~~g-~~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          300 GETIFV-T-APHEATAG-IIGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             CCceEE-e-ccCCCCCc-eEEEcCCceEEEEEEccchh
Confidence            333221 1 11222233 33445667666555554443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.43  E-value=8.3  Score=35.27  Aligned_cols=260  Identities=14%  Similarity=0.166  Sum_probs=139.1

Q ss_pred             cccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEec
Q 020798           23 LRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDV  102 (321)
Q Consensus        23 ~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  102 (321)
                      ...|.++.-..+|. |..|+.+| +..||-........  ..   .  .....|.++.-..++. |-.|+.+| +..||.
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~--~~---~--~~~~~i~~i~~d~~g~-lWigT~~G-l~~yd~   89 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFT--YG---E--NNNTRIYCGVIIDNTY-LYMGTDNG-ILVYNY   89 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSC--TT---S--TTSSCEEEEEEETTTE-EEEEETTE-EEEEET
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEc--cC---C--CCCceEEEEEEcCCCc-EEEEeCCC-eEEEeC
Confidence            46799999888885 44555566 44565322111000  00   0  1234688887777765 55566665 788998


Q ss_pred             CCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE----eCCCCCeeEEEEccCCCEEEEEeCC
Q 020798          103 PTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL----PAHSDPVTAVDFNRDGTMIVTSSYD  178 (321)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d  178 (321)
                      .+.+...........|.++.. .++ .|..++.+ -+..+|..+++.....    ......|.++...+++.+.+ ++.+
T Consensus        90 ~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~  165 (758)
T 3ott_A           90 RADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN  165 (758)
T ss_dssp             TTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT
T ss_pred             CCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC
Confidence            765432211111234666654 344 45555555 5788888765533220    11234577887777777554 4454


Q ss_pred             CeEEEEeCCCCceeeeeccC----CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEe
Q 020798          179 GLCRIWDASTGHCMKTLIDD----ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV  254 (321)
Q Consensus       179 g~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (321)
                      | +..++..+++........    ....+..+...+++..|.+|+. +-+..+|..+++... +...  ....+...+..
T Consensus       166 G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l--~~~~i~~i~~d  240 (758)
T 3ott_A          166 G-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAF--HNNSIKSLALD  240 (758)
T ss_dssp             E-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEE--EEEEEEEEEEC
T ss_pred             C-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCC--CCCeEEEEEEc
Confidence            4 667887665432211111    1123677777777665555554 458889987665432 2111  11123334444


Q ss_pred             cCCeEEEEeCCCCeEEEEEcccceEEEEec-------CCCCCeEEEEecCCCceEEE
Q 020798          255 TNGKYIVSGSEDSCVYLWELQSRKVVQKLE-------GHTDPVISVASHPTENIIAS  304 (321)
Q Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~l~s  304 (321)
                      .+|.+.+ |+.+ -+.+++..+.+......       -....|.++....+|.+-+.
T Consensus       241 ~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiG  295 (758)
T 3ott_A          241 GNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLG  295 (758)
T ss_dssp             TTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEE
T ss_pred             CCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEE
Confidence            4555444 4444 57788876654322111       02245888888777766553

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=90.39  E-value=6  Score=31.81  Aligned_cols=195  Identities=10%  Similarity=0.072  Sum_probs=105.2

Q ss_pred             CCCCEEEEecCCceEEEeeccccCCCCCCC-CCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecC---Cc---
Q 020798           33 HDGRLLASSSADKTLLTYSLSSISNSDSTP-PSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP---TA---  105 (321)
Q Consensus        33 ~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~---  105 (321)
                      |+..++++.+.+|.++--.+..+....... ......+... +.+..+........++..+..|.++-....   ..   
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            566788889999999988776553322110 1101122222 334444444455567777888887666542   21   


Q ss_pred             ---cee---eeeecCcccEEEEEECC---CCCEEEEeeCCCcEEEEecCC-------CEEEEEEeCCCCCeeEEEEccCC
Q 020798          106 ---TCL---KTLIGHTNYVFCVNFNP---QSNMIVSGAFDETVRIWDVKT-------GKCLKVLPAHSDPVTAVDFNRDG  169 (321)
Q Consensus       106 ---~~~---~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~wd~~~-------~~~~~~~~~~~~~v~~~~~~~~~  169 (321)
                         ..+   ..+. ..+.+..+...+   +...++..+..|.++.-.+..       +.....+.. .+.+..+......
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~  162 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD  162 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence               100   0111 123344443322   456788889999998887632       222222333 4455555554445


Q ss_pred             CEEEEEeCCCeEEEEeCCCCce-------eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 020798          170 TMIVTSSYDGLCRIWDASTGHC-------MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~  230 (321)
                      ..++..+.+|.+..+....-..       +..+....+..+..+..-.++..+++.+..|..+...+.
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~  230 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS  230 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence            6788888899888876543111       111111223344444444456678888888988888764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.13  E-value=6.2  Score=31.55  Aligned_cols=139  Identities=8%  Similarity=0.044  Sum_probs=76.2

Q ss_pred             CCCCEEEEEe--CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCC--------------CcEEEEecCC
Q 020798           83 SDSRFLVSAS--DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD--------------ETVRIWDVKT  146 (321)
Q Consensus        83 ~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~~wd~~~  146 (321)
                      +++.+++...  .++.|...+.+... ...+..  ..  +--+++++++|+-+...              ..|+..++..
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            4666666553  24556555654433 222321  12  23457788887766542              3577777765


Q ss_pred             CEEEEEEeCCCCCeeEEEEccCCCEEEEEe----CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec-C
Q 020798          147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSS----YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL-D  221 (321)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-d  221 (321)
                      ++... +..  ..  ...|+++++.++-..    ....|...++.... ...+.....     .+++++++.|.-.+. .
T Consensus        98 ~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~-----~~~~~~g~~iy~t~~g~  166 (302)
T 3s25_A           98 HGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL-----FTCNTSDRYFYYNNPKN  166 (302)
T ss_dssp             CCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC-----CCSEEETTEEEEECTTT
T ss_pred             CcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc-----eEeeEECCEEEEEeCCC
Confidence            54322 221  22  236778888887665    34456666666432 333332211     345778888876554 5


Q ss_pred             CeEEEEeCCCCcEEEE
Q 020798          222 NTLRLWNYSTGKILKT  237 (321)
Q Consensus       222 ~~i~i~d~~~~~~~~~  237 (321)
                      ..|.+.++..+.....
T Consensus       167 ~~Iy~~~l~g~~~~~l  182 (302)
T 3s25_A          167 GQLYRYDTASQSEALF  182 (302)
T ss_dssp             CCEEEEETTTTEEEEE
T ss_pred             ceEEEEECCCCCEEEE
Confidence            6788888776554433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=89.92  E-value=8.3  Score=32.73  Aligned_cols=234  Identities=11%  Similarity=0.149  Sum_probs=130.4

Q ss_pred             EEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc-ce
Q 020798           29 VKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA-TC  107 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~  107 (321)
                      .-.+|..+.+|.=. ...+.+++++...        .+..+.-. ..|.--.|-.+ +.|+.. .+..|+-|++... .+
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~--------klks~~~~-e~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P  138 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKS--------KMKAHTMT-DDVTFWKWISL-NTVALV-TDNAVYHWSMEGESQP  138 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTE--------EEEEEECS-SCCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCC
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhh--------hhcceecC-CCceEEEecCC-CeEEEE-cCCeeEEecccCCCCc
Confidence            34577777777654 6788888875421        11111111 23333344333 334433 3467999999653 34


Q ss_pred             eeeeecCc----ccEEEEEECCCCCEEEEee-------CCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC---CCEEE
Q 020798          108 LKTLIGHT----NYVFCVNFNPQSNMIVSGA-------FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD---GTMIV  173 (321)
Q Consensus       108 ~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~  173 (321)
                      .+-+..|.    ..|..-..+++.++++..+       -.|.+.+|..+.+. -+.+.+|......+....+   ...++
T Consensus       139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~  217 (494)
T 1bpo_A          139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFC  217 (494)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEE
T ss_pred             hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEE
Confidence            45454443    3466666788888876433       24678888876543 4455666544333333211   12444


Q ss_pred             EEeC---CCeEEEEeCCCC---c-----eeeee-ccC--CCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEe
Q 020798          174 TSSY---DGLCRIWDASTG---H-----CMKTL-IDD--ENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       174 ~~~~---dg~i~~~d~~~~---~-----~~~~~-~~~--~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~  239 (321)
                      .+..   .+.+++.++...   .     ....+ ...  ...-.-.+..++.-..+..-+.-|.|++||+.++..+..-.
T Consensus       218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr  297 (494)
T 1bpo_A          218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (494)
T ss_dssp             EEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence            4443   378888887432   1     01111 111  11123457788877788888999999999999999887765


Q ss_pred             ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce
Q 020798          240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK  278 (321)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (321)
                      -...++..  .+.....+. +++-...|.|.-..+....
T Consensus       298 Is~~~iF~--t~~~~~~~G-i~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          298 ISGETIFV--TAPHEATAG-IIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             CCSSCEEE--EEEETTTTE-EEEEETTCEEEEEEECTTT
T ss_pred             ccCCceEE--ecccCCCCc-EEEEccCceEEEEEEcccc
Confidence            44444322  222223343 4444577777666655443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.92  E-value=15  Score=35.64  Aligned_cols=223  Identities=10%  Similarity=0.111  Sum_probs=118.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcceee-eeecCcccEEEEEECCC------CCEEEEeeC-CCcEEEEecCC
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLK-TLIGHTNYVFCVNFNPQ------SNMIVSGAF-DETVRIWDVKT  146 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~~wd~~~  146 (321)
                      .|...+.+.  ++++.++ ++.+.++.+..++... .-..-...|.|+++.|.      +.+++.|.+ |++++++++.+
T Consensus       515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            455555443  4565554 5778888776543211 11123457999998763      368888886 99999999987


Q ss_pred             CEEEEEEeCC-CCCeeEEEEcc--CCCEEEEEeCCCeEEEE--eCCCCceee--eeccCCCCCeEEEEEccCCCEEEEEe
Q 020798          147 GKCLKVLPAH-SDPVTAVDFNR--DGTMIVTSSYDGLCRIW--DASTGHCMK--TLIDDENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       147 ~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~dg~i~~~--d~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      -+.+...... .....++.+..  ...+|..|-.||.+.-+  |..++....  ....+ ..++.-..+...|..-+.+.
T Consensus       592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~  670 (1158)
T 3ei3_A          592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFAC  670 (1158)
T ss_dssp             CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEE
T ss_pred             CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEE
Confidence            6655443322 12344444432  23467788899987544  444444321  12222 23444444544444433444


Q ss_pred             cCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecC-CeEEEEeCCCCeEEEEEcccce--EEEEecCCCCCeEEEEec
Q 020798          220 LDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN-GKYIVSGSEDSCVYLWELQSRK--VVQKLEGHTDPVISVASH  296 (321)
Q Consensus       220 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~  296 (321)
                      .+....+|.-+ ++....... ......+ +.|.... ..-++..+ ++.++|..+...+  .+.++. ....++.++++
T Consensus       671 s~rp~liy~~~-~~l~~s~l~-~~~v~~~-~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~  745 (1158)
T 3ei3_A          671 SDRPTVIYSSN-HKLVFSNVN-LKEVNYM-CPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQ  745 (1158)
T ss_dssp             SSSCEEEEESS-SSEEEEEBS-SSCCCEE-EEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEE
T ss_pred             CCCCEEEEEcC-CceEEeccC-hHHhceE-eccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEc
Confidence            45555555433 333222111 1111122 2232221 12233333 4559998875432  223333 23578999999


Q ss_pred             CCCceEEEEe
Q 020798          297 PTENIIASGA  306 (321)
Q Consensus       297 p~~~~l~s~~  306 (321)
                      |..+.++.+.
T Consensus       746 ~~~~~~~v~~  755 (1158)
T 3ei3_A          746 EVSQCFGVLS  755 (1158)
T ss_dssp             GGGTEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9988776654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.56  E-value=1.9  Score=37.67  Aligned_cols=107  Identities=12%  Similarity=0.112  Sum_probs=63.2

Q ss_pred             EEEEECCCCCEEEEe-cCCceEEEeeccccCCCCC----CCCCcc-cccccccccEEEEEECCCCCEEEEEeCCCcEEEE
Q 020798           27 SSVKFSHDGRLLASS-SADKTLLTYSLSSISNSDS----TPPSPL-QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLW  100 (321)
Q Consensus        27 ~~~~~s~~g~~l~~~-~~d~~v~~~~~~~~~~~~~----~~~~~~-~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iw  100 (321)
                      ..+..+|||++++.+ --+.++.+++...+.....    .+...+ .... -.-+....+|.++|.-..+--.|.+|.-|
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkW  404 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKW  404 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEE
Confidence            356889999987664 5577899999875422100    000000 1111 12456778999999544455689999999


Q ss_pred             ecCCc----------ceeeeeecCcccEEEEE-----ECCCCCEEEEee
Q 020798          101 DVPTA----------TCLKTLIGHTNYVFCVN-----FNPQSNMIVSGA  134 (321)
Q Consensus       101 d~~~~----------~~~~~~~~~~~~v~~~~-----~~~~~~~l~~~~  134 (321)
                      ++...          ..+..+.-|-..-...+     -.|+|++|++..
T Consensus       405 ni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          405 NMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             eccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            98653          23334443433322221     257888888864

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.28  E-value=11  Score=32.15  Aligned_cols=104  Identities=12%  Similarity=0.143  Sum_probs=59.0

Q ss_pred             cEEEEEECCCCC-EEEEEeCCCcEEEEecCCcc---eeeee---ec------CcccEEEEEECCC----CCEEEEeeC--
Q 020798           75 GVSDLVFSSDSR-FLVSASDDKTIRLWDVPTAT---CLKTL---IG------HTNYVFCVNFNPQ----SNMIVSGAF--  135 (321)
Q Consensus        75 ~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~---~~------~~~~v~~~~~~~~----~~~l~~~~~--  135 (321)
                      ....|+|.|+|. .|+++...|.|++++.....   .+..+   ..      .......++++|+    +.++++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            356899999986 45556788999999754321   11111   11      1345788999996    333333221  


Q ss_pred             C----------CcEEEEecCC----------CEEEEEEe--CCCCCeeEEEEccCCCEEEEEeCC
Q 020798          136 D----------ETVRIWDVKT----------GKCLKVLP--AHSDPVTAVDFNRDGTMIVTSSYD  178 (321)
Q Consensus       136 d----------g~i~~wd~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d  178 (321)
                      +          ..|.-|.+..          .+.+..+.  ........++|.|||.++++.+..
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence            1          1344455432          12333332  122345789999999877776544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.15  E-value=8.3  Score=36.48  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=27.1

Q ss_pred             EEEecCCeEEEEeCCCCeEEEEEcccceEEEEe
Q 020798          251 TFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL  283 (321)
Q Consensus       251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  283 (321)
                      ....++..++++-+.|+++|+|++.+++++...
T Consensus       241 ~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          241 MIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             EEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             EeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            334456778999999999999999999887654

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=86.49  E-value=11  Score=30.14  Aligned_cols=195  Identities=12%  Similarity=0.095  Sum_probs=97.4

Q ss_pred             CCCCEEEEecCCceEEEeeccccCCCCCCC-CCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe---cCCc---
Q 020798           33 HDGRLLASSSADKTLLTYSLSSISNSDSTP-PSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD---VPTA---  105 (321)
Q Consensus        33 ~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd---~~~~---  105 (321)
                      |+..++++.+.+|.++--.+..+....... ......+..+ +.+..+........|+..+..|.+.-+.   ++..   
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence            456678888999999877665433211110 0000112222 3343444444455666677788765544   3222   


Q ss_pred             ---ceeeee--ecCcccEEEEEE-C--CCCCEEEEeeCCCcEEEEecCC-------CEEEEEEeCCCCCeeEEEEccCCC
Q 020798          106 ---TCLKTL--IGHTNYVFCVNF-N--PQSNMIVSGAFDETVRIWDVKT-------GKCLKVLPAHSDPVTAVDFNRDGT  170 (321)
Q Consensus       106 ---~~~~~~--~~~~~~v~~~~~-~--~~~~~l~~~~~dg~i~~wd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~  170 (321)
                         ..+..+  ....+.|..+.. .  .++.+++..+..|.++.-.+..       +.....+..+ +.+..+.......
T Consensus        80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~  158 (307)
T 1zi0_A           80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED  158 (307)
T ss_dssp             SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred             CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence               111111  112344554433 2  3456788889999999887631       2222223333 4555554444455


Q ss_pred             EEEEEeCCCeEEEEeCCCCce-------eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          171 MIVTSSYDGLCRIWDASTGHC-------MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       171 ~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                      .++..+.+|.+.-+....-..       +.-+....+..+..+...+++..+++.+..|..+-.++
T Consensus       159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~  224 (307)
T 1zi0_A          159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAV  224 (307)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred             EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence            677788888877776532111       11111122233444444445567888888888887765

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.31  E-value=17  Score=31.11  Aligned_cols=110  Identities=15%  Similarity=0.109  Sum_probs=58.3

Q ss_pred             ccEEEEEECCCCC-EEEEecCCceEEEeeccccCCCCCCCCCcccccc----cccccEEEEEECCC----CCEEEEEeC-
Q 020798           24 RAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFT----GHEQGVSDLVFSSD----SRFLVSASD-   93 (321)
Q Consensus        24 ~~v~~~~~s~~g~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~----~h~~~i~~~~~~~~----~~~l~~~~~-   93 (321)
                      ..-..|+|.|+|+ .|+++...|.|++++.............+.....    ....+...|+|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4556899999996 4555667888888854321100000000000111    12467889999996    443333221 


Q ss_pred             -C----------CcEEEEecCCc----------ceeeeee----cCcccEEEEEECCCCCEEEEeeC
Q 020798           94 -D----------KTIRLWDVPTA----------TCLKTLI----GHTNYVFCVNFNPQSNMIVSGAF  135 (321)
Q Consensus        94 -d----------~~i~iwd~~~~----------~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~  135 (321)
                       +          ..|.-|.+...          +.+..+.    .|.  ...|+|.|||.++++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCC
Confidence             1          13444555321          1222221    243  568999999987776554

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=82.19  E-value=20  Score=29.58  Aligned_cols=153  Identities=11%  Similarity=0.084  Sum_probs=82.6

Q ss_pred             CCCCCEEEEecCCceEEEeeccccCCCCCCC-CCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe---cCCc--
Q 020798           32 SHDGRLLASSSADKTLLTYSLSSISNSDSTP-PSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD---VPTA--  105 (321)
Q Consensus        32 s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd---~~~~--  105 (321)
                      -|+..++++.+.+|.|+--.+..+....... ...-..+. ..+.+..+........|+..+..|.+.-+.   ++..  
T Consensus         4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r   82 (370)
T 3l6v_A            4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS   82 (370)
T ss_dssp             CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred             ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence            3677889999999999976655433211110 01111122 234555555555556677677788765554   3321  


Q ss_pred             ----ceeeee--ecCcccEEEEE-EC--CCCCEEEEeeCCCcEEEEecCC-------CEEEEEEeCCCCCeeEEEEccCC
Q 020798          106 ----TCLKTL--IGHTNYVFCVN-FN--PQSNMIVSGAFDETVRIWDVKT-------GKCLKVLPAHSDPVTAVDFNRDG  169 (321)
Q Consensus       106 ----~~~~~~--~~~~~~v~~~~-~~--~~~~~l~~~~~dg~i~~wd~~~-------~~~~~~~~~~~~~v~~~~~~~~~  169 (321)
                          ..+..+  ......|..+. +.  .++.+|+.++..|.++.-.+..       +.....+.. .+.+-.+......
T Consensus        83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~  161 (370)
T 3l6v_A           83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGD  161 (370)
T ss_dssp             TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSC
T ss_pred             ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCC
Confidence                111111  11234454443 32  2356888899999999887532       222222322 3444444444445


Q ss_pred             CEEEEEeCCCeEEEEeC
Q 020798          170 TMIVTSSYDGLCRIWDA  186 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~  186 (321)
                      ..++..+..|.+.-+..
T Consensus       162 ~~i~l~T~~G~~irf~~  178 (370)
T 3l6v_A          162 RDVLLFASNGKTVRFGE  178 (370)
T ss_dssp             CEEEEEETTSEEEEEEG
T ss_pred             ceEEEEeCCCeEEEEEc
Confidence            56777788887766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	321
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-51
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-44
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-36
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-35
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-28
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-45
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-31
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-31
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-42
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-35
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-34
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-30
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-25
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-31
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-19
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-26
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-24
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-16
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-15
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-24
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-18
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-16
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-15
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-24
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-20
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-23
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-18
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-23
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-21
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-21
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-20
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-19
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-17
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-19
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-19
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-19
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-18
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-17
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-14
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-10
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-17
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-14
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-13
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-17
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-15
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-15
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-14
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-15
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-15
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-14
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-13
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-13
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-12
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-10
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-11
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	8e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	5e-08
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-05
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	7e-05
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	1e-04
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	0.001
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	0.002
d1xfda1	465	b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-lik	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  171 bits (432), Expect = 1e-51
 Identities = 82/316 (25%), Positives = 138/316 (43%), Gaps = 66/316 (20%)

Query: 62  PPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCV 121
            P      +GH   V+ ++F      +VSAS+D TI++WD  T    +TL GHT+ V  +
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

Query: 122 N------------------------------------------FNPQSNMIVSGAFDETV 139
           +                                            P  + IVS + D+T+
Sbjct: 66  SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125

Query: 140 RIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDE 199
           ++W+V+TG C+K    H + V  V  N+DGT+I + S D   R+W  +T  C   L +  
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185

Query: 200 NPP-------------------VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG 240
           +                         K    G F+L G+ D T+++W+ STG  L T  G
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245

Query: 241 HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN 300
           H N    +      + GK+I+S ++D  + +W+ ++++ ++ L  H   V S+  H T  
Sbjct: 246 HDN---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302

Query: 301 IIASGALDNDRTVKIW 316
            + +G++D   TVK+W
Sbjct: 303 YVVTGSVDQ--TVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  152 bits (383), Expect = 2e-44
 Identities = 83/319 (26%), Positives = 126/319 (39%), Gaps = 74/319 (23%)

Query: 17  QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGV 76
             L+GH   ++ V F     ++ S+S D T+  +   +            +   GH   V
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--------GDFERTLKGHTDSV 62

Query: 77  SDLV------------------------------------------FSSDSRFLVSASDD 94
            D+                                              +   +VSAS D
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 95  KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP 154
           KTI++W+V T  C+KT  GH  +V  V  N    +I S + D+TVR+W V T +C   L 
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 155 AHSDPVTAVDFN--------------------RDGTMIVTSSYDGLCRIWDASTGHCMKT 194
            H   V  + +                     + G  +++ S D   ++WD STG C+ T
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242

Query: 195 LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSV 254
           L+  +N  V  V F   GKFIL    D TLR+W+Y   + +KT   H +    +   F  
Sbjct: 243 LVGHDNW-VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD--FH- 298

Query: 255 TNGKYIVSGSEDSCVYLWE 273
               Y+V+GS D  V +WE
Sbjct: 299 KTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (327), Expect = 4e-36
 Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 12/191 (6%)

Query: 7   LESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSIS---------- 56
           +   +     +T  GH   +  V+ + DG L+AS S D+T+  + +++            
Sbjct: 127 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 186

Query: 57  --NSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGH 114
                S  P           G           FL+S S DKTI++WDV T  CL TL+GH
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 115 TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT 174
            N+V  V F+     I+S A D+T+R+WD K  +C+K L AH   VT++DF++    +VT
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 306

Query: 175 SSYDGLCRIWD 185
            S D   ++W+
Sbjct: 307 GSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (319), Expect = 5e-35
 Identities = 68/238 (28%), Positives = 121/238 (50%), Gaps = 29/238 (12%)

Query: 10  FRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF 69
           F+ +   +T++GH   +SSV    +G  + S+S DKT+  + + +           ++ F
Sbjct: 88  FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--------GYCVKTF 139

Query: 70  TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM 129
           TGH + V  +  + D   + S S+D+T+R+W V T  C   L  H + V C+++ P+S+ 
Sbjct: 140 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 199

Query: 130 --------------------IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG 169
                               ++SG+ D+T+++WDV TG CL  L  H + V  V F+  G
Sbjct: 200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 259

Query: 170 TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW 227
             I++ + D   R+WD     CMKTL   E+  V+ + F     +++ G++D T+++W
Sbjct: 260 KFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (272), Expect = 3e-28
 Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 5/223 (2%)

Query: 98  RLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHS 157
           + W  P       L GH + V  V F+P  +++VS + D T+++WD +TG   + L  H+
Sbjct: 1   KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

Query: 158 DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILV 217
           D V  + F+  G ++ + S D   ++WD     C++T+   ++     V   PNG  I+ 
Sbjct: 60  DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVS 118

Query: 218 GTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR 277
            + D T+++W   TG  +KT+TGH      +       +G  I S S D  V +W + ++
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN---QDGTLIASCSNDQTVRVWVVATK 175

Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK 320
           +   +L  H   V  ++  P  +  +        T K      
Sbjct: 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 218

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  154 bits (389), Expect = 5e-45
 Identities = 66/319 (20%), Positives = 128/319 (40%), Gaps = 15/319 (4%)

Query: 1   MSSDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDS 60
           ++++            +TL GHL  I ++ +  D RLL S+S D  L+ +   +      
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT------ 86

Query: 61  TPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHT---NY 117
              + +         V    ++    ++     D    ++++ T      +         
Sbjct: 87  --TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144

Query: 118 VFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY 177
                     N IV+ + D T  +WD++TG+       H+  V ++    D  + V+ + 
Sbjct: 145 YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204

Query: 178 DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT 237
           D   ++WD   G C +T    E+  ++ + F PNG     G+ D T RL++    + L T
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 238 YTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP 297
           Y+         S +FS  +G+ +++G +D    +W+         L GH + V  +    
Sbjct: 264 YSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 298 TENIIASGALDNDRTVKIW 316
               +A+G+   D  +KIW
Sbjct: 323 DGMAVATGS--WDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  118 bits (295), Expect = 2e-31
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 72  HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV 131
           H   V  L  + D+R  VS + D + +LWDV    C +T  GH + +  + F P  N   
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242

Query: 132 SGAFDETVRI--WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG 189
           +G+ D T R+                    +T+V F++ G +++    D  C +WDA   
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302

Query: 190 HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 228
                L   +N  VS +  + +G  +  G+ D+ L++WN
Sbjct: 303 DRAGVLAGHDNR-VSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  116 bits (291), Expect = 9e-31
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 10/178 (5%)

Query: 10  FRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF 69
                 T T  GH   + S+  + D RL  S + D +   + +              Q F
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--------GMCRQTF 222

Query: 70  TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNY--VFCVNFNPQS 127
           TGHE  ++ + F  +     + SDD T RL+D+     L T         +  V+F+   
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 128 NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
            ++++G  D    +WD        VL  H + V+ +    DG  + T S+D   +IW+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  149 bits (375), Expect = 1e-42
 Identities = 95/348 (27%), Positives = 157/348 (45%), Gaps = 35/348 (10%)

Query: 4   DQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSIS------- 56
           + +L       L ++L  H   +  VKFS+DG  LA+   +KT   Y +S  S       
Sbjct: 44  NPALPREIDVELHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSD 101

Query: 57  ---NSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIG 113
               +              +  +  + FS D +FL + ++D+ IR+WD+     +  L G
Sbjct: 102 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 161

Query: 114 HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV 173
           H   ++ +++ P  + +VSG+ D TVRIWD++TG+C   L       T      DG  I 
Sbjct: 162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 221

Query: 174 TSSYDGLCRIWDASTGHCMKTLIDDENP------PVSFVKFSPNGKFILVGTLDNTLRLW 227
             S D   R+WD+ TG  ++ L  +          V  V F+ +G+ ++ G+LD +++LW
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

Query: 228 NYSTGKILKTYTG---------HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK 278
           N                     +   K  + S  +  N +YI+SGS+D  V  W+ +S  
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341

Query: 279 VVQKLEGHTDPVISVAS------HPTENIIASGALDNDRTVKIWTQEK 320
            +  L+GH + VISVA        P  N+ A+G+   D   +IW  +K
Sbjct: 342 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS--GDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  128 bits (322), Expect = 6e-35
 Identities = 72/296 (24%), Positives = 112/296 (37%), Gaps = 29/296 (9%)

Query: 1   MSSDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDS 60
           +S D +         T +       I SV FS DG+ LA+ + D+         I   D 
Sbjct: 99  LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL--------IRIWDI 150

Query: 61  TPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFC 120
                +    GHEQ +  L +      LVS S D+T+R+WD+ T  C  TL         
Sbjct: 151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV 210

Query: 121 VNFNPQSNMIVSGAFDETVRIWDVKTGKC-------LKVLPAHSDPVTAVDFNRDGTMIV 173
                    I +G+ D  VR+WD +TG          +    H D V +V F RDG  +V
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 174 TSSYDGLCRIWDASTG-----------HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN 222
           + S D   ++W+                  +         V  V  + N ++IL G+ D 
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330

Query: 223 TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVT---NGKYIVSGSEDSCVYLWELQ 275
            +  W+  +G  L    GH NS   ++     +         +GS D    +W+ +
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 1e-34
 Identities = 82/348 (23%), Positives = 141/348 (40%), Gaps = 61/348 (17%)

Query: 12  PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTG 71
                + L GH   + +      G  + S S D TL  +S  +           L+   G
Sbjct: 5   ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVT--------GKCLRTLVG 55

Query: 72  HEQGVSDLVFSSD--------------------------------------SRFLVSASD 93
           H  GV       +                                       + +VS S 
Sbjct: 56  HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115

Query: 94  DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL 153
           D T+R+WD+ T  CL  L+GH   V           +VSGA+D  V++WD +T  CL  L
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173

Query: 154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK 213
             H++ V ++ F  DG  +V+ S D   R+WD  TG+C+ TL   ++             
Sbjct: 174 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---ELKDN 228

Query: 214 FILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE 273
            ++ G  D+T+++W+  TG+ L+T  G    +  +  T    N  ++++ S+D  V LW+
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV--TCLQFNKNFVITSSDDGTVKLWD 286

Query: 274 LQSRKVVQKL-----EGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           L++ + ++ L      G    V  + +  T+ + A G+ +     K+ 
Sbjct: 287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 3e-30
 Identities = 64/258 (24%), Positives = 105/258 (40%), Gaps = 17/258 (6%)

Query: 59  DSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYV 118
                   +   GH+  V           +VS SDD T+++W   T  CL+TL+GHT  V
Sbjct: 2   RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 119 FCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD 178
           +         +  S      V   +            +    T    +     +V+ S D
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIH----TLYGHTSTVRCMHLHEKRVVSGSRD 116

Query: 179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY 238
              R+WD  TG C+  L+              +G+ ++ G  D  +++W+  T   L T 
Sbjct: 117 ATLRVWDIETGQCLHVLMGHVAA---VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173

Query: 239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT 298
            GHTN  Y +       +G ++VSGS D+ + +W++++   +  L GH      +     
Sbjct: 174 QGHTNRVYSLQF-----DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD- 227

Query: 299 ENIIASGALDNDRTVKIW 316
            NI+ SG  + D TVKIW
Sbjct: 228 -NILVSG--NADSTVKIW 242

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 6e-25
 Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 16/200 (8%)

Query: 86  RFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK 145
           R +VS + D  +++WD  T TCL TL GHTN V+ + F+     +VSG+ D ++R+WDV+
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWDVE 205

Query: 146 TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSF 205
           TG C+  L  H    + ++      ++V+ + D   +IWD  TG C++TL        + 
Sbjct: 206 TGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 263

Query: 206 VKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT-----GHTNSKYCISSTFSVTNGKYI 260
                N  F++  + D T++LW+  TG+ ++        G     + I    S       
Sbjct: 264 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR--AS-NTKLVC 320

Query: 261 VSGSEDSC----VYLWELQS 276
             GS +      + + +   
Sbjct: 321 AVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 1e-14
 Identities = 52/213 (24%), Positives = 84/213 (39%), Gaps = 49/213 (23%)

Query: 142 WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENP 201
           W     K  KVL  H D V        G  IV+ S D   ++W A TG C++TL+     
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG- 58

Query: 202 PVSFVKFSPN--------------------------------------GKFILVGTLDNT 223
            V   +   N                                       K ++ G+ D T
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL 283
           LR+W+  TG+ L    GH  +  C+         + +VSG+ D  V +W+ ++   +  L
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDG-----RRVVSGAYDFMVKVWDPETETCLHTL 173

Query: 284 EGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           +GHT+ V S+        + SG+LD   ++++W
Sbjct: 174 QGHTNRVYSL--QFDGIHVVSGSLDT--SIRVW 202

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 18/143 (12%)

Query: 10  FRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF 69
                   TL GH    S ++      +L S +AD T+  + + +     +       + 
Sbjct: 204 VETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 261

Query: 70  TGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI-----GHTNYVFCVNFN 124
                         +  F++++SDD T++LWD+ T   ++ L+     G    V+ +  +
Sbjct: 262 AVTC-------LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 125 PQSNMIVSGAFDET----VRIWD 143
               +   G+ + T    + + D
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVLD 337

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 3e-31
 Identities = 65/302 (21%), Positives = 114/302 (37%), Gaps = 65/302 (21%)

Query: 66  LQKFTGHEQGVSDLV-FSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFN 124
           LQ+     +    +     D + +VS   D TI++WD  T  C + L GHT  V C+ ++
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 125 PQSNMIVSGAFDE--------------------------------------TVRIWDVKT 146
            +  +  S                                           ++ +WD+ +
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 147 GKCL---KVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPV 203
              +   +VL  H   V  VDF+    +  ++S D   ++W+ ST   ++TL   +    
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKRG-- 180

Query: 204 SFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG 263
                    + ++ G+ DNT+RLW+   G  L+   GH     CI         K IVSG
Sbjct: 181 -IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-----KRIVSG 234

Query: 264 SEDSCVYLWELQS---------RKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVK 314
           + D  + +W+L +            ++ L  H+  V  +        I S +  +D T+ 
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSS--HDDTIL 290

Query: 315 IW 316
           IW
Sbjct: 291 IW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (203), Expect = 7e-19
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 23/162 (14%)

Query: 33  HDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS 92
            D + + S+S D+T+  ++ S+           ++   GH++G++ L +    R +VS S
Sbjct: 146 FDDKYIVSASGDRTIKVWNTST--------CEFVRTLNGHKRGIACLQYRD--RLVVSGS 195

Query: 93  DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG----- 147
            D TIRLWD+    CL+ L GH   V C+ F+ +   IVSGA+D  +++WD+        
Sbjct: 196 SDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGKIKVWDLVAALDPRA 253

Query: 148 ----KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
                CL+ L  HS  V  + F  D   IV+SS+D    IWD
Sbjct: 254 PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 6e-07
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 4   DQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISN-SDSTP 62
           D ++  +                       D + + S + D  +  + L +  +      
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 256

Query: 63  PSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD 101
              L+    H   V  L F  D   +VS+S D TI +WD
Sbjct: 257 TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 2e-26
 Identities = 37/296 (12%), Positives = 86/296 (29%), Gaps = 11/296 (3%)

Query: 21  GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLV 80
            H   + +V  S+  R + +      +  + +S   +  +  P         +  +    
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS---HPGNKSPVSQLDCLNRDNYIRSCK 104

Query: 81  FSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVR 140
              D   L+   +  T+ +WD+   T        ++   C       +  V  +      
Sbjct: 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164

Query: 141 IWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDEN 200
           I          V         A   +         +      +         +    D  
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224

Query: 201 PPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYI 260
             +  + + P G+++ VG   +               Y  H +    +S  F+   GK+ 
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSN---VEVLHVNKPDKYQLHLHESCVLSLKFA-YCGKWF 280

Query: 261 VSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           VS  +D+ +  W       + +    +  V+S      +  I +G+   D+   ++
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGS--GDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 2e-17
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 72  HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV 131
           HE  V  L F+   ++ VS   D  +  W  P    +      ++ V   + +     IV
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV 322

Query: 132 SGAFDETVRIWDV 144
           +G+ D+   +++V
Sbjct: 323 TGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 2e-17
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 114 HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV 173
           H + V  + F       VS   D  +  W    G  +      S  V + D + D   IV
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV 322

Query: 174 TSSYDGLCRIWD 185
           T S D    +++
Sbjct: 323 TGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 1e-14
 Identities = 47/261 (18%), Positives = 80/261 (30%), Gaps = 40/261 (15%)

Query: 4   DQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPP 63
           D S    +              I S K   DG  L       TL  + L++ +       
Sbjct: 78  DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

Query: 64  SPLQ------------------------------------KFTGHEQGVSDLVFSSDSRF 87
           +                                       +F GH  G S +  S+D   
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197

Query: 88  LVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG 147
           L +   D T+R WD+     L+     T+ +F + + P    +  G     V +  V   
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256

Query: 148 KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVK 207
              ++   H   V ++ F   G   V++  D L   W    G  +      E+  V    
Sbjct: 257 DKYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCD 313

Query: 208 FSPNGKFILVGTLDNTLRLWN 228
            S + K+I+ G+ D    ++ 
Sbjct: 314 ISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 5e-12
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 22  HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVF 81
           H   + S+KF++ G+   S+  D  L  +     +             +     V     
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---------SIFQSKESSSVLSCDI 314

Query: 82  SSDSRFLVSASDDKTIRLWDV 102
           S D +++V+ S DK   +++V
Sbjct: 315 SVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 11/123 (8%)

Query: 202 PVSFVKFSPNG-KFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYI 260
           P      + +G    +    D  +        + + T   H      +  T S    +++
Sbjct: 11  PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAV--TIS-NPTRHV 66

Query: 261 VSGSEDSCVYLWELQSRKVVQKLE-----GHTDPVISVASHPTENIIASGALDNDRTVKI 315
            +G    CV +W++        +         + + S    P    +  G   +  ++  
Sbjct: 67  YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125

Query: 316 WTQ 318
              
Sbjct: 126 LAA 128

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =   99 bits (247), Expect = 1e-24
 Identities = 35/323 (10%), Positives = 90/323 (27%), Gaps = 31/323 (9%)

Query: 17  QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGV 76
           Q        IS +K      LL  +S D +L  Y               L +   ++  +
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI-----QAKNVDLLQSLRYKHPL 59

Query: 77  SDLVFSSDSRFLVSASDDKTIRLWDVPTA--TCLKTLIGHTNYVFCVNFNPQSNMIVSGA 134
               F  ++   +     +   L        +         N   C       + +++ +
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119

Query: 135 FDETVRIWDVKTGKCLKVLPAHSDPVTAV------DFNRDGTMIVTSSYDGLCRIWDAST 188
           +D  + + D +      +   + +             + + + ++    +   + +    
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179

Query: 189 GHCMKT---LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG------------K 233
                        +             +     ++D  + +  +               +
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239

Query: 234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISV 293
             +     TN  Y ++S       K++ +   D  +  W LQ+RK ++      +    V
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVV 298

Query: 294 ASHPTENIIASGALDNDRTVKIW 316
               ++NI+      +D T K  
Sbjct: 299 KIACSDNILCLAT--SDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.7 bits (184), Expect = 4e-16
 Identities = 24/178 (13%), Positives = 54/178 (30%), Gaps = 25/178 (14%)

Query: 93  DDKTIRLWDVPTATCLKTLIGHTNY----VFCVNFNPQSNMIVSGAFDETVRIWDVKTG- 147
           ++  ++ + +P        I  +              +       + D  V +       
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 148 --------------KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK 193
                         +        + PV +++F+     + T+  DG+   W+  T   +K
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

Query: 194 TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
                     S VK + +   + + T D+T +        I +T   + +S Y I   
Sbjct: 288 NFAKF--NEDSVVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIYIIFDY 339

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.2 bits (175), Expect = 6e-15
 Identities = 24/221 (10%), Positives = 64/221 (28%), Gaps = 13/221 (5%)

Query: 107 CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKC---LKVLPAHSDPVTAV 163
            ++      +Y+  +   P  ++++  ++D ++ ++          L     +  P+   
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 164 DFNRD-GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDN 222
           +F  +    I   +  G     D       + L ++E               ++  + D 
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122

Query: 223 TLRLWNYSTGKILKTYTGHTNS---KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV 279
            + + +            + NS   K         TN   ++ G  +S V  + L   + 
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182

Query: 280 VQKLEGHTD----PVISVASHPTENIIASGALDNDRTVKIW 316
                  +               +   A  ++D    V + 
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG--RVAVE 221

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.0 bits (164), Expect = 2e-13
 Identities = 17/142 (11%), Positives = 41/142 (28%), Gaps = 22/142 (15%)

Query: 81  FSSDSRFLVSASDDKTIRLWDVPTATCLKTL---------------IGHTNYVFCVNFNP 125
              +      +S D  + +                                 V  + F+P
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261

Query: 126 QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWD 185
           +   + +   D  +  W+++T K +K      +  + V       ++  ++ D   +   
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA 320

Query: 186 AS----TGH--CMKTLIDDENP 201
           A       +   +  + D ENP
Sbjct: 321 AIDQTIELNASSIYIIFDYENP 342

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 9e-12
 Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 148 KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI--DDENPPVSF 205
           + +++  A  D ++ +      ++++ +S+DG   ++          L+       P+  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 206 VKFSPNGKFILV 217
             F  N    + 
Sbjct: 62  CNFIDNTDLQIY 73

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 16/117 (13%), Positives = 44/117 (37%), Gaps = 13/117 (11%)

Query: 6   SLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSP 65
              +FR + L          ++S++FS   + L ++ +D  +  ++L +           
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT--------RKK 285

Query: 66  LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVN 122
           ++ F    +  S +  +     L  A+ D T +          +T+  + + ++ + 
Sbjct: 286 IKNFAKFNE-DSVVKIACSDNILCLATSDDTFKTNAA----IDQTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 8e-05
 Identities = 5/39 (12%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           ++VQ  +   D +  +   P+++++   +   D ++ ++
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITS--WDGSLTVY 38

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.5 bits (246), Expect = 3e-24
 Identities = 51/363 (14%), Positives = 112/363 (30%), Gaps = 67/363 (18%)

Query: 14  TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHE 73
                   H   I SV          S S D  L  +    + N    P         H+
Sbjct: 5   ATANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDN--ENPKDKSYSHFVHK 60

Query: 74  QGVSDLVF-------SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
            G+  +         + +   + + S    +  + +      K +I     +   +    
Sbjct: 61  SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120

Query: 127 S---------------NMIVSGAFDETVRIWDV------------------KTGKCLKVL 153
           S               + +V+     T  IW                    +    ++  
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 154 PAHSDPVTAVDFNRDGTMIVTSSYDGLCRI-----WDASTGHCMKTLIDDENPPVSFVKF 208
              S   T+VD +  G +I T   +G  +I              +  + + +  +  VKF
Sbjct: 181 MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239

Query: 209 SPNGKFILVGTLDNTL---RLWNYSTGKILKTYTGHTNSKYCISSTFSVTN--------- 256
           SP G  + +    N+     L+    G+ + + +  T+S       F+ ++         
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299

Query: 257 -GKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV----ISVASHPTENIIASGALDNDR 311
            G+ + S   D  +  W++++++ +  L  H D +      +A     + +A   + + +
Sbjct: 300 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVK 359

Query: 312 TVK 314
            +K
Sbjct: 360 FLK 362

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.2 bits (201), Expect = 3e-18
 Identities = 39/310 (12%), Positives = 87/310 (28%), Gaps = 69/310 (22%)

Query: 71  GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC------LKTLIGHTNYVFCVNF- 123
            H+  +  +   +   F VS S D  +++WD              +   H + +  V+  
Sbjct: 12  AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 124 ------NPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG-------- 169
                   +  ++ + +F   +  + +      K +      +   D  +          
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 170 -------TMIVTSSYDGLCRIWDA-STGHCMKTLIDDENP----------------PVSF 205
                    +V +   G   IW          +L  + +P                  + 
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 206 VKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY---TGHTNSKYCISSTFSVTNGKYIVS 262
           V  S  G  I  G  + T+++   ST + L  +       N+   I S      G  +  
Sbjct: 190 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248

Query: 263 GSEDSCVYLW----------------ELQSRKVVQKLEGHTDPVISVASHPTENIIASGA 306
             + +                        S +       H+  V+S++ + +   + S  
Sbjct: 249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 308

Query: 307 LDNDRTVKIW 316
              D  ++ W
Sbjct: 309 --WDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.7 bits (184), Expect = 6e-16
 Identities = 45/368 (12%), Positives = 115/368 (31%), Gaps = 72/368 (19%)

Query: 5   QSLESFRPYTLTQTLNGHLRAISSVKF-------SHDGRLLASSSADKTLLTYSLSSISN 57
           + L++  P   + +   H   +  V         + +  L+A++S    LL Y ++    
Sbjct: 42  KLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE 101

Query: 58  SDSTPPSPLQKF--TGHEQGVSDLVFSSDS-----RFLVSASDDKTIRLWDVP------- 103
           +       L        +     L + + +       LV+     T  +W          
Sbjct: 102 TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 161

Query: 104 -----------TATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD------VKT 146
                          +++ +  + +   V+ +    +I +G  + TV+I +      +  
Sbjct: 162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RGLIATGFNNGTVQISELSTLRPLYN 220

Query: 147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG---LCRIWDASTGHCMKTLIDDENP-- 201
            +    +  +S+ + +V F+  G+++  +          +++   G  + +L    +   
Sbjct: 221 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 280

Query: 202 ----------PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISST 251
                      V  + F+ +G+ +     D  LR W+  T + + T   H +        
Sbjct: 281 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340

Query: 252 FSVT-NGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDND 310
            +V  +G  +         +L                    S         +    L  D
Sbjct: 341 LAVDEHGDSLAEPGVFDVKFLK---------------KGWRSGMGADLNESLCCVCL--D 383

Query: 311 RTVKIWTQ 318
           R+++ + +
Sbjct: 384 RSIRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.0 bits (177), Expect = 4e-15
 Identities = 34/262 (12%), Positives = 81/262 (30%), Gaps = 52/262 (19%)

Query: 102 VPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL------PA 155
           + TA   K    H   +F V+     +  VS + D  +++WD K                
Sbjct: 4   IATANAGK---AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV 58

Query: 156 HSDPVTAVDF-------NRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSF--- 205
           H   +  VD          +  ++ T+S+ G    +  +     K +I ++   +     
Sbjct: 59  HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK 118

Query: 206 ------VKFSPNG-----KFILVGTLDNTLRLWN-YSTGKILKTYTGHTNSKYCISSTF- 252
                 +K+  +        ++   +  T  +W  +       + T + +    +  T  
Sbjct: 119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 178

Query: 253 ------------SVTNGKYIVSGSEDSCVYL------WELQSRKVVQKLEGHTDPVISVA 294
                        ++    I +G  +  V +        L + +    +  +++ + SV 
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238

Query: 295 SHPTENIIASGALDNDRTVKIW 316
             P  +++A     N       
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITL 260

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.3 bits (240), Expect = 9e-24
 Identities = 43/271 (15%), Positives = 84/271 (30%), Gaps = 12/271 (4%)

Query: 16  TQTLNGHL-RAISSVKFS--HDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH 72
                GH    +++VKFS     + L S      ++ +  +    S+S   +   +F   
Sbjct: 55  VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL 114

Query: 73  EQGVSDLVFSSDSRFLVSASD--DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
              +SD+ +  + R L    +  D         +   L  + GH+  +   +      M 
Sbjct: 115 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR 174

Query: 131 VSGAFDETVR----IWDVKTGKCLKVLPAHSDPVTAVDFNR---DGTMIVTSSYDGLCRI 183
                D+           K     +        V  V+F+    +  + V S     C  
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234

Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
             +           +      F     + +       D T+R+W+ +T K ++ +T    
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 244 SKYCISSTFSVTNGKYIVSGSEDSCVYLWEL 274
                      T    I+S S D  +  +EL
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.0 bits (216), Expect = 2e-20
 Identities = 47/331 (14%), Positives = 103/331 (31%), Gaps = 31/331 (9%)

Query: 6   SLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSP 65
           SL+   P     T        + + +      +A        +      + + DS  P P
Sbjct: 4   SLKEIIP-PQPSTQRNF---TTHLSYDPTTNAIAYPCGKSAFVR----CLDDGDSKVP-P 54

Query: 66  LQKFTGHEQG-VSDLVFS--SDSRFLVSASDDKTIRLWDVPTATCLKTLI--------GH 114
           + +FTGH    V+ + FS    S++L S  +   + +W         ++           
Sbjct: 55  VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL 114

Query: 115 TNYVFCVNFNPQSNMIVSGAF--DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI 172
              +  ++++ +   +       D         +G  L  +  HS  + A    +   M 
Sbjct: 115 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR 174

Query: 173 VTSSYDGLCR----IWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWN 228
             +  D                  +T     +          +G+F++    D  +  ++
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234

Query: 229 YSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD 288
             +G+ LK                S  + +   +   D+ + +W++ + K VQK      
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 289 PVISVA---SHPTENIIASGALDNDRTVKIW 316
            + +            I S +LD   T+  +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDG--TLNFY 323

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.9 bits (239), Expect = 2e-23
 Identities = 49/310 (15%), Positives = 94/310 (30%), Gaps = 33/310 (10%)

Query: 22  HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVF 81
            +  IS   ++ D   +A    +  +  Y               + +   H   V+ + +
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEK------SGNKWVQVHELKEHNGQVTGVDW 59

Query: 82  SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGH--TNYVFCVNFNPQSNMIVSGAFDETV 139
           + DS  +V+   D+   +W +   T   TL+         CV + P       G+    +
Sbjct: 60  APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119

Query: 140 RIWDVKTGK----CLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG------ 189
            I   +       C  +       V ++D++ +  ++   S D  CRI+ A         
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179

Query: 190 -----------HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY 238
                        +          V  V FS NG  +   + D+T+ L +      + T 
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239

Query: 239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT 298
              T     ++     T    + +G +   V L+   S        G  D     +    
Sbjct: 240 ASETLPLLAVTFI---TESSLVAAGHDCFPV-LFTYDSAAGKLSFGGRLDVPKQSSQRGL 295

Query: 299 ENIIASGALD 308
                   LD
Sbjct: 296 TARERFQNLD 305

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.4 bits (199), Expect = 5e-18
 Identities = 41/330 (12%), Positives = 94/330 (28%), Gaps = 40/330 (12%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH 72
           +     L  H   ++ V ++ D   + +   D+         +         P       
Sbjct: 41  WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY------VWTLKGRTWKPTLVILRI 94

Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT----CLKTLIGHTNYVFCVNFNPQSN 128
            +    + ++ + +     S  + I +           C        + V  ++++P S 
Sbjct: 95  NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 154

Query: 129 MIVSGAFDETVRIWDVKTGK------------------CLKVLPAHSDPVTAVDFNRDGT 170
           ++ +G+ D   RI+     +                   +    +    V  V F+ +G+
Sbjct: 155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 214

Query: 171 MIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS 230
            +   S+D    + DA     + TL  +  P    V F      +  G  D    L+ Y 
Sbjct: 215 RVAWVSHDSTVCLADADKKMAVATLASETLPL-LAVTFITESSLVAAGH-DCFPVLFTYD 272

Query: 231 TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV 290
           +     ++ G  +     S        ++             E  +         H + V
Sbjct: 273 SAAGKLSFGGRLDVPKQSSQRGLTARERF----QNLDKKASSEGSAAAGAGLDSLHKNSV 328

Query: 291 ISVASHPTENI----IASGALDNDRTVKIW 316
             ++             +  +D    + IW
Sbjct: 329 SQISVLSGGKAKCSQFCTTGMDG--GMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 14/181 (7%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH 72
             L    +     +  V FS +G  +A  S D T+                  +      
Sbjct: 191 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD--------KKMAVATLASE 242

Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS 132
              +  + F ++S  + +  D     L+   +A    +  G  +     +    +     
Sbjct: 243 TLPLLAVTFITESSLVAAGHDC-FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF 301

Query: 133 GAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG----TMIVTSSYDGLCRIWDAST 188
              D+              +   H + V+ +     G    +   T+  DG   IWD  +
Sbjct: 302 QNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

Query: 189 G 189
            
Sbjct: 361 L 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.9 bits (130), Expect = 4e-09
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 256 NGKYIVSGSEDSCVYLWELQSRK--VVQKLEGHTDPVISVASHPTENIIASGALDNDRTV 313
           +   I     +  V+++E    K   V +L+ H   V  V   P  N I +     DR  
Sbjct: 18  DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC--GTDRNA 75

Query: 314 KIW 316
            +W
Sbjct: 76  YVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.6 bits (124), Expect = 2e-08
 Identities = 17/123 (13%), Positives = 31/123 (25%), Gaps = 14/123 (11%)

Query: 30  KFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV 89
            F  +  L+A+      +L               +    F G             +    
Sbjct: 250 TFITESSLVAAGHDCFPVLF---------TYDSAAGKLSFGGRLDVPKQSSQRGLTARER 300

Query: 90  SASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN----MIVSGAFDETVRIWDVK 145
             + DK         A        H N V  ++             +   D  + IWDV+
Sbjct: 301 FQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

Query: 146 TGK 148
           + +
Sbjct: 360 SLE 362

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 93.9 bits (231), Expect = 9e-23
 Identities = 41/293 (13%), Positives = 82/293 (27%), Gaps = 44/293 (15%)

Query: 66  LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI-GHTNYVFCVNFN 124
            Q   GH + ++ L  S+D + L SA  +  I  WD+ T    +     H   +  +   
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 125 PQSNMIVSGAFDETVRIWDVKTG------------------------------------- 147
            + ++      D    +    +G                                     
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124

Query: 148 --KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSF 205
                      S   + V  + D   +     D    ++  S     +         ++ 
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184

Query: 206 VKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSE 265
           V FS NG F++       +  ++ +    L      T     ++      +   + +GS 
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244

Query: 266 DSCVYLWELQSRKVVQKL--EGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           D+ V +W +        +    H    ++      E  I S     D  +K W
Sbjct: 245 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG--QDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.1 bits (177), Expect = 2e-15
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 106 TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP-AHSDPVTAVD 164
           +  +   GH   +  ++ +     + S   +  +  WD+ TG   +V P  H+  +T + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 165 FNRDGTMIVTSSYDGLCRIWDASTGHCM 192
               G +   S  D L  +    +G   
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDS 90

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 69.6 bits (168), Expect = 4e-14
 Identities = 22/126 (17%), Positives = 45/126 (35%)

Query: 147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFV 206
           G   +V   H+  +TA+  + DG  + ++  +G    WD STG   +   D     ++ +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 207 KFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED 266
           K +  G    V   D+   +    +G        +  S   +    S      + +  + 
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121

Query: 267 SCVYLW 272
             +Y  
Sbjct: 122 IAIYSH 127

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.9 bits (135), Expect = 6e-10
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 114 HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL--PAHSDPVTAVDFNRDGTM 171
           HT  V CV+++P +  + +G+ D +V +W++       ++   AH+          + T 
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282

Query: 172 IVTSSYDGLCRIWD 185
           IV++  D   + W+
Sbjct: 283 IVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 8e-09
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 89  VSASDDKTIRLWDVPTATCLKTLI--GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV 144
            + S D ++ +W++   +    +I   H               IVS   D  ++ W+V
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.0 bits (117), Expect = 1e-07
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 39  ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIR 98
           A+ S D +++ ++++  S+       P+     H     + V   +   +VSA  D  I+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDH------PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293

Query: 99  LWDVP 103
            W+VP
Sbjct: 294 FWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 5e-06
 Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 1/119 (0%)

Query: 113 GHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI 172
                V   N                  + +            H+  V  V ++ D   +
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 173 VTSSYDGLCRIWDASTGHCMKTLIDDENP-PVSFVKFSPNGKFILVGTLDNTLRLWNYS 230
            T S D    +W+ +       +I   +           N   I+    D+ ++ WN  
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 90.7 bits (223), Expect = 2e-21
 Identities = 47/315 (14%), Positives = 100/315 (31%), Gaps = 23/315 (7%)

Query: 14  TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHE 73
           +L +T  G    +     +  G  +   +   ++ T  + S         +  + +T H 
Sbjct: 11  SLPRTARGTAVVLG---NTPAGDKIQYCN-GTSVYTVPVGS--------LTDTEIYTEHS 58

Query: 74  QGVSDLVFSSDSRFLVSASDDKTIRLW--DVPTATCLKTLIGHTNYVFCVNFNP--QSNM 129
              +    S    +  S      +R+W     T     T+   +  V  ++++   +   
Sbjct: 59  HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIA 118

Query: 130 IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG 189
            V    +    ++   TG     L   +  + +VDF       + S  D           
Sbjct: 119 AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 178

Query: 190 HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCIS 249
              K+   +    V  V+++P+G        D T+ L+N   G     +   +      S
Sbjct: 179 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 238

Query: 250 STFSVT----NGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVAS-HPTENIIAS 304
            +        +G  I S S D  + +W + + KV + +   T           T+  + S
Sbjct: 239 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 298

Query: 305 GALDNDRTVKIWTQE 319
            + +    +     E
Sbjct: 299 ISANG--FINFVNPE 311

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.2 bits (219), Expect = 4e-21
 Identities = 41/293 (13%), Positives = 93/293 (31%), Gaps = 52/293 (17%)

Query: 65  PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFN 124
            L+  +GH +G++ L  +     L+S S D  I  W   +         H+N +  ++ +
Sbjct: 5   VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNS 55

Query: 125 PQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPV------------------------ 160
                      D        K     +   A ++                          
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 161 -------TAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK 213
                   +        + V        +++  S       L        S++  SP+  
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175

Query: 214 FILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI--------SSTFSVTNGKYIVSGSE 265
           +I  G +   + L++  + ++  +      SK            +         + +GS 
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235

Query: 266 DSCVYLWELQS-RKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT 317
           D+ ++++ ++   K+++ L  H D V ++       +++SGA   D  +K W 
Sbjct: 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGA---DACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.1 bits (151), Expect = 5e-12
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 72  HEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPT-ATCLKTLIGHTNYVFCVNFNPQSNMI 130
                       +   + + S D  I ++ V      +K L  H + V  + +    + +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTL 272

Query: 131 VSGAFDETVRIWDV 144
           VS   D  ++ W+V
Sbjct: 273 VSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (128), Expect = 4e-09
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 27  SSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR 86
            + +   +  L+A+ S D  +  YS+         P   ++    H+ GV++L++ + S 
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVK-------RPMKIIKALNAHKDGVNNLLWETPST 271

Query: 87  FLVSASDDKTIRLWDV 102
            LVS+  D  I+ W+V
Sbjct: 272 -LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 7e-08
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 146 TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSF 205
             + LK +  H+  +TA+  N     +++ SYDG    W +S+ H   +        +  
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHS------NLIVS 51

Query: 206 VKFSPNGKFILV 217
           +  S   ++  +
Sbjct: 52  LDNSKAQEYSSI 63

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 231 TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV 290
             ++LKT +GH      ++   +      ++SGS D  +  W   S       + H++ +
Sbjct: 2   HDEVLKTISGHNKGITALT--VN-----PLISGSYDGRIMEWSSSSM-----HQDHSNLI 49

Query: 291 ISVASHPTENII 302
           +S+ +   +   
Sbjct: 50  VSLDNSKAQEYS 61

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 9e-04
 Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 6/39 (15%)

Query: 278 KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           +V++ + GH   + ++  +P    + SG    D  +  W
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISG--SYDGRIMEW 36

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.4 bits (217), Expect = 2e-20
 Identities = 58/364 (15%), Positives = 117/364 (32%), Gaps = 85/364 (23%)

Query: 18  TLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVS 77
           TL GH+ ++ +     +   + + + DK +  Y   +           L + +GH+ GV 
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSIN--------KKFLLQLSGHDGGVW 57

Query: 78  DLVFSSDSRFL-------------------------------------------VSASDD 94
            L ++     +                                           V+ S D
Sbjct: 58  ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117

Query: 95  KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVS---------------------G 133
            T+ +W +P  + +       +Y    +   ++   V                      G
Sbjct: 118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG 177

Query: 134 AFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK 193
           ++D T+ +WDV   KCL +L  H+D + +  ++ +    +++S D   RIWD   G  M 
Sbjct: 178 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237

Query: 194 TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFS 253
           TL                        +                +     +     + T  
Sbjct: 238 TLQGHTALVGLLRLSDKF-------LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290

Query: 254 VTNGKYIVSGSEDSCVYLWELQSRKVVQK-LEGHTDPVISVASHPTENIIASGALDNDRT 312
             +   +VSGSE+    ++ L+S K+V   +    D + SV     + ++A+   + D  
Sbjct: 291 YVSDNILVSGSENQ-FNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLVAAV--EKDGQ 346

Query: 313 VKIW 316
             + 
Sbjct: 347 SFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (139), Expect = 3e-10
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 208 FSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS 267
                 +++ G  D  +R+++    K L   +GH    + +       +G  +VSGS D 
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK----YAHGGILVSGSTDR 74

Query: 268 CVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEKE 321
            V +W+++        EGH   V  +     +NI        D T+ +W   KE
Sbjct: 75  TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 4e-09
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 5/177 (2%)

Query: 54  SISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIG 113
           ++   D      L   +GH   +   ++  + +  +SAS D TIR+WD+     + TL G
Sbjct: 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241

Query: 114 HTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV 173
           HT  V  +  + +  +  +          +  + K       H   ++A+        I+
Sbjct: 242 HTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF----SYHHTNLSAITTFYVSDNIL 297

Query: 174 TSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYS 230
            S  +    I++  +G  +   I  +   +  V F      +     D    L    
Sbjct: 298 VSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILD 353

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 85.6 bits (210), Expect = 2e-19
 Identities = 34/333 (10%), Positives = 79/333 (23%), Gaps = 61/333 (18%)

Query: 29  VKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL 88
                    +  ++    L    ++S +   S            + G    + + D+R  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV-------MPDKFGPGTAMMAPDNRTA 54

Query: 89  -VSASDDKTIRLWDVPTATCLKTL------IGHTNYVFCVNFNPQSNMIVSGAFDET--- 138
            V  +    I   D+ T                   ++    +P    + +         
Sbjct: 55  YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN 114

Query: 139 ---------VRIWDVKTGKCLKVLPAHS--DPVTAVDFNRDGTMIVTSSYDGLCRIWDAS 187
                    + ++    G   K +        V  +    DG++ V           D  
Sbjct: 115 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD---IYKMDVK 171

Query: 188 TGHCMKTLIDDENP------------------------PVSFVKFSPNGKFILVGTLDNT 223
           TG     L                                +  +F  + +      L   
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231

Query: 224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKL 283
               +  TGK         +      +          + G   + +  ++L+ RK+++  
Sbjct: 232 YLSVDLKTGKTHTQE--FADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAA 288

Query: 284 EGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
                    VA     + +  G   N   + ++
Sbjct: 289 N-LDHTYYCVAFDKKGDKLYLGGTFN--DLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 78.2 bits (191), Expect = 6e-17
 Identities = 23/285 (8%), Positives = 66/285 (23%), Gaps = 47/285 (16%)

Query: 79  LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTL-IGHTNYVFCVNFNPQSNMI-VSGAFD 136
               +   +++  +    + + DV + T  K+  +            P +    V     
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 137 ETVRIWDVKTGKCLKVLP------AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
             +   D+ T K                 + +   + DG  +  +               
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 191 CMKTLIDDENP-------------PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT 237
               +    +               V  ++ + +G           +   +  TGK    
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY---VAGPDIYKMDVKTGKYTVA 178

Query: 238 YTGHTNSKYCISS----------------------TFSVTNGKYIVSGSEDSCVYLWELQ 275
                 ++   S+                           + +   +          +L+
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238

Query: 276 SRKVVQKLEG-HTDPVISVASHPTENIIASGALDNDRTVKIWTQE 319
           + K   +     T+   +    P +     G L+      +  ++
Sbjct: 239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRK 283

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 75.5 bits (184), Expect = 5e-16
 Identities = 22/189 (11%), Positives = 50/189 (26%), Gaps = 17/189 (8%)

Query: 22  HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGV----- 76
             R +  ++ + DG L  +      +   +            +                 
Sbjct: 143 MPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 202

Query: 77  ---------SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIG-HTNYVFCVNFNPQ 126
                    +   F  D +   +A         D+ T           T   F    +P+
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 262

Query: 127 SNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDA 186
               + G  +  +  +D+K  K +K           V F++ G  +          +++ 
Sbjct: 263 DPNQIYGVLN-RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320

Query: 187 STGHCMKTL 195
            T   +K +
Sbjct: 321 DTLEKVKNI 329

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 75.2 bits (183), Expect = 6e-16
 Identities = 37/260 (14%), Positives = 62/260 (23%), Gaps = 38/260 (14%)

Query: 10  FRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF 69
                L+       R++ S   S DG+ + ++       T  L+                
Sbjct: 75  TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP----TQRLNDHYVVKPPRLEVFSTA 130

Query: 70  TGHEQGVSDLVFSSDSRFLVSASDDKTI-------RLWDVPTATCLKTLIGH-------- 114
            G E             +L+ A+DD ++          DV T      L           
Sbjct: 131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYS 190

Query: 115 -----------------TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHS 157
                            +       F        +          D+KTGK      A  
Sbjct: 191 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 250

Query: 158 DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILV 217
             +                       +D      +K    D       V F   G  + +
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTY--YCVAFDKKGDKLYL 308

Query: 218 GTLDNTLRLWNYSTGKILKT 237
           G   N L ++N  T + +K 
Sbjct: 309 GGTFNDLAVFNPDTLEKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 20/151 (13%), Positives = 50/151 (33%), Gaps = 12/151 (7%)

Query: 20  NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDL 79
           +      +  +F  D +  A++      L+  L        T  +  Q+F    +     
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK-------TGKTHTQEFADLTELYFTG 257

Query: 80  VFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETV 139
           + S      +    +  +  +D+     +K      +  +CV F+ + + +  G     +
Sbjct: 258 LRSPKDPNQIYGVLN-RLAKYDLKQRKLIKA-ANLDHTYYCVAFDKKGDKLYLGGTFNDL 315

Query: 140 RIWDVKTGKCLKVLPAHSDP---VTAVDFNR 167
            +++  T + +K +          T   F R
Sbjct: 316 AVFNPDTLEKVKNIKLPGGDMSTTTPQVFIR 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 84.9 bits (208), Expect = 3e-19
 Identities = 43/322 (13%), Positives = 85/322 (26%), Gaps = 38/322 (11%)

Query: 21  GHLRAISSVKFSHDGRLLASSSAD--KTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSD 78
                I  V+   D ++           L  Y   +            +KF  +   V  
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT---------GKAEKFEENLGNVFA 90

Query: 79  LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV------- 131
           +    + +F V A+D   I   D+ T             +     +  S  I        
Sbjct: 91  MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH 150

Query: 132 ---SGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDAST 188
               G   + + ++D++  K       +S    A  F+ D   +   SY  L    D   
Sbjct: 151 GETDGYVMQAIHVYDMEGRKIFAATTENSH-DYAPAFDADSKNLYYLSYRSLDPSPDRVV 209

Query: 189 GHCMKT------LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKI----LKTY 238
            +          +I       +  K  P       G  D        S   +     +  
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269

Query: 239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT 298
               +S    S         Y     E   +  +++++R    K+    + +  +     
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSAD 325

Query: 299 ENIIASGALDNDRTVKIWTQEK 320
              +      +D  +  +  EK
Sbjct: 326 RKTVMVRK--DDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 84.9 bits (208), Expect = 3e-19
 Identities = 23/190 (12%), Positives = 45/190 (23%), Gaps = 12/190 (6%)

Query: 21  GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLV 80
                  +  F  D + L   S      +     ++ S      P           +   
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP-FVIPLIPGSPNPTK 234

Query: 81  FSSDSRFLVSASDDKTIRLW-------DVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG 133
               S    +   D             D      +  L               +      
Sbjct: 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA 294

Query: 134 AFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK 193
                +  +DVKT K    +    + +T +  + D   ++    DG    +        +
Sbjct: 295 PEKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350

Query: 194 TLIDDENPPV 203
           T+  D+ P V
Sbjct: 351 TVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 84.5 bits (207), Expect = 4e-19
 Identities = 21/226 (9%), Positives = 55/226 (24%), Gaps = 21/226 (9%)

Query: 79  LVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDET 138
                           + I ++D+             ++ +   F+  S  +   ++   
Sbjct: 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSL 201

Query: 139 VRIWDVKTGKC-------LKVLPAHSDPVTAVDFNRDGTMIVTSSY------DGLCRIWD 185
               D               V+P                      Y           I  
Sbjct: 202 DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV 261

Query: 186 ASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSK 245
               + M   ++      S         +         L  ++  T K +     +    
Sbjct: 262 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-VTEVKNNLTD- 319

Query: 246 YCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVI 291
             +S+     + K ++   +D  +Y + L+  +  + +E    P++
Sbjct: 320 LRLSA-----DRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 82.2 bits (201), Expect = 2e-18
 Identities = 21/185 (11%), Positives = 48/185 (25%), Gaps = 19/185 (10%)

Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC-------LKTLIGHTNYVF 119
              T          F +DS+ L   S        D                +        
Sbjct: 172 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN 231

Query: 120 CVNFNPQSNMIVSGAFDETVRIW-------DVKTGKCLKVLPAHSDPVTAVDFNRDGTMI 172
                P+S    +G +D             D    + +  L +     +           
Sbjct: 232 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYY 291

Query: 173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG 232
             +   G+   +D  T      + ++    ++ ++ S + K ++V   D  +  +     
Sbjct: 292 QGAPEKGVLLKYDVKTRKV-TEVKNN----LTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

Query: 233 KILKT 237
           +  +T
Sbjct: 347 EDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 65.3 bits (157), Expect = 1e-12
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 9   SFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQK 68
               Y +   L   +   S             +     LL Y + +            +K
Sbjct: 262 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT------------RK 309

Query: 69  FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTL 111
            T  +  ++DL  S+D + ++   DD  I  + +      +T+
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.3 bits (113), Expect = 5e-07
 Identities = 25/206 (12%), Positives = 49/206 (23%), Gaps = 12/206 (5%)

Query: 118 VFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY 177
            F  +F+P    +++        I DV     LKV       +  V    D  +      
Sbjct: 5   KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGT 62

Query: 178 DGLC--RIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNY-----S 230
                  I+D  TG   K   +  N     V  +     +     +              
Sbjct: 63  REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122

Query: 231 TGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV 290
                   T  T S       +          G     +++++++ RK+           
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHD 181

Query: 291 ISVASHPTENIIASGALDNDRTVKIW 316
            + A       +   +          
Sbjct: 182 YAPAFDADSKNLYYLS--YRSLDPSP 205

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 79.5 bits (194), Expect = 2e-17
 Identities = 35/316 (11%), Positives = 81/316 (25%), Gaps = 46/316 (14%)

Query: 16  TQTLNGHLRAISSVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQ 74
             T+            +  GR   A+ +  ++L+   L +         S  ++      
Sbjct: 26  VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF 85

Query: 75  GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC-----------LKTLIGHTNYVFCVNF 123
           G      S D + L        + L                    +        +  + +
Sbjct: 86  GA---ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAW 142

Query: 124 NPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP-----------------------V 160
               + +     D  V   +   G  ++  P  S                          
Sbjct: 143 ARDGSKLYGLGRDLHVMDPE--AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT 200

Query: 161 TAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL 220
                 +D      ++Y       D  TG      +   +        +P          
Sbjct: 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR--AFGA 258

Query: 221 DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV 280
            N L  ++      +K      +S Y +    S T+G  +  G     +  ++ ++ +  
Sbjct: 259 YNVLESFDLEKNASIKR-VPLPHSYYSV--NVS-TDGSTVWLGGALGDLAAYDAETLEKK 314

Query: 281 QKLEGHTDPVISVASH 296
            +++   +  +S+AS 
Sbjct: 315 GQVDLPGNASMSLASV 330

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 69.8 bits (169), Expect = 4e-14
 Identities = 18/268 (6%), Positives = 66/268 (24%), Gaps = 41/268 (15%)

Query: 86  RFLVSASDDKTIRLWDVPTATCLKTL--IGHTNYVFCVNFNPQSN-MIVSGAFDETVRIW 142
            ++++ +    + + D       K +               P       +    E++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 143 DVKTGKCLKVLPAHS-----DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID 197
           D+ TG+ L  +   +       +     + DG  +          +           L D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 198 ----------DENPPVSFVKFSPNGKFILVGTLDNTL------------------RLWNY 229
                     +    ++ + ++ +G  +     D  +                       
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 230 STGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK-LEGHTD 288
               +       ++         +  +       +  + +   +L++ ++  + +     
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 289 PVISVASHPTENIIASGALDNDRTVKIW 316
              S A +P +             ++ +
Sbjct: 242 FYFSTAVNPAKTRAF----GAYNVLESF 265

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 68.3 bits (165), Expect = 1e-13
 Identities = 26/321 (8%), Positives = 76/321 (23%), Gaps = 56/321 (17%)

Query: 36  RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL-VSASDD 94
             + + +    L+      ++                       + +   R    + +  
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVIT------IADAGPTPMVPMVAPGGRIAYATVNKS 55

Query: 95  KTIRLWDVPTATCLKTLIGHT-----------------NYVFCVNFNPQSNMIVSGAFDE 137
           +++   D+ T   L  +   T                   +       +  +        
Sbjct: 56  ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115

Query: 138 TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID 197
            V ++D +T    K        +T + + RDG+ +     D    + D   G  ++    
Sbjct: 116 RVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPI 172

Query: 198 DENP----------------------PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKIL 235
                                        F     +            L   +  TG++ 
Sbjct: 173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232

Query: 236 KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVAS 295
                  +  Y  ++           +    + +  ++L+    ++++        SV  
Sbjct: 233 MREVRIMDVFYFSTAVNPAKT----RAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNV 287

Query: 296 HPTENIIASGALDNDRTVKIW 316
               + +  G       +  +
Sbjct: 288 STDGSTVWLGGALG--DLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 17/151 (11%), Positives = 43/151 (28%), Gaps = 14/151 (9%)

Query: 22  HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVF 81
            + A        D      ++    LLT  L        T    +++    +        
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLE-------TGEMAMREVRIMDVFYFSTAV 248

Query: 82  SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRI 141
           +              +  +D+     +K  +   +  + VN +   + +  G     +  
Sbjct: 249 NPAKTRA--FGAYNVLESFDLEKNASIKR-VPLPHSYYSVNVSTDGSTVWLGGALGDLAA 305

Query: 142 WDVKTGKCLKVLPAHSDPVTAVD----FNRD 168
           +D +T +    +    +   ++     F RD
Sbjct: 306 YDAETLEKKGQVDLPGNASMSLASVRLFTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.9 bits (138), Expect = 4e-10
 Identities = 23/205 (11%), Positives = 52/205 (25%), Gaps = 19/205 (9%)

Query: 130 IVSGAFDETVRIWDVKTGKCLKVLPAHSDP--VTAVDFNRDG-TMIVTSSYDGLCRIWDA 186
           I++ A  + + + D +     KV+                 G     T +        D 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 187 STGHCMKTLIDDENPPVSF----VKFSPNGKFILVGTLDNTLRLWNYSTG---------K 233
            TG  +  +                 SP+GK + +      L L ++            +
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 234 ILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISV 293
            L         +      ++  +G  +     D  V     ++  +V+     +    + 
Sbjct: 124 TLSRRKAFEAPRQITMLAWA-RDGSKLYGLGRDLHVMDP--EAGTLVEDKPIQSWEAETY 180

Query: 294 ASHPTENIIASGALDNDRTVKIWTQ 318
           A      +              +T 
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTA 205

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 79.4 bits (194), Expect = 2e-17
 Identities = 40/332 (12%), Positives = 86/332 (25%), Gaps = 58/332 (17%)

Query: 31  FSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS 90
            + D R +  +             I   D      +    G    + + V + D  F+  
Sbjct: 9   PAPDARRVYVNDPAHFAAVTQQFVI---DGEAGRVIGMIDGGF--LPNPVVADDGSFIAH 63

Query: 91  AS----------DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQS---------NMIV 131
           AS              + ++D  T      +       F V   P            +  
Sbjct: 64  ASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY 123

Query: 132 SGAFDETVRIWDVKTGKCLKVLPAHS-------DPVTAVDFNRDGTMI-VTSSYDGLCRI 183
             +    V + D++     ++L            P T     RDG++  V    +G   I
Sbjct: 124 QFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 183

Query: 184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTN 243
                 H            ++   +S     ++  T    +   + S+G           
Sbjct: 184 THTEVFHPED------EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL 237

Query: 244 SKYCISSTF-------------------SVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE 284
           ++   +  +                    V         +    V + + ++ + + K E
Sbjct: 238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE 297

Query: 285 GHTDPVISVASHPTENIIASGALDNDRTVKIW 316
                + S+     E  +       D+T+ I 
Sbjct: 298 MG-HEIDSINVSQDEKPLLYALSTGDKTLYIH 328

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 71.0 bits (172), Expect = 2e-14
 Identities = 29/321 (9%), Positives = 74/321 (23%), Gaps = 41/321 (12%)

Query: 14  TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTY-----SLSSISNSDSTPPSPLQK 68
            +   ++G    + +   + DG  +A +S   + +        +         P + ++ 
Sbjct: 39  RVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL 96

Query: 69  FTGHEQGVSD----LVFSSDSRFLV--SASDDKTIRLWDVPTATCLKTLIGHTNYVF--- 119
                  V         + D + L+    S    + + D+      + L     Y     
Sbjct: 97  PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT 156

Query: 120 ----CVNFNPQSNMI-VSGAFDETVRIWDVKTGKCLKVL-----PAHSDPVTAVDFNRDG 169
                       ++  V+   + T  I   +                      V     G
Sbjct: 157 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG 216

Query: 170 TMIVTSSYDGLCRIWDASTGH-----------CMKTLIDDENPPVSFVKFSPNGKFILVG 218
            +       G  +   A                    +                      
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276

Query: 219 TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVT-NGKYIVSGSEDSCVYLWELQSR 277
           T    + + +  TG+ L  +          S   S           + D  +Y+ + +S 
Sbjct: 277 TASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 333

Query: 278 KVVQKLEGHTDPVISVASHPT 298
           + ++ +         + +   
Sbjct: 334 EELRSVNQLGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 67.9 bits (164), Expect = 2e-13
 Identities = 21/165 (12%), Positives = 46/165 (27%), Gaps = 17/165 (10%)

Query: 21  GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSS--------------ISNSDSTPPSPL 66
                I+   +S     L   +    +    LSS                 +D   P   
Sbjct: 192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 251

Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNP- 125
           Q+   H       +           +  + + + D  T   L       + +  +N +  
Sbjct: 252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK-FEMGHEIDSINVSQD 310

Query: 126 -QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG 169
            +  +      D+T+ I D ++G+ L+ +         +     G
Sbjct: 311 EKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 78.7 bits (193), Expect = 7e-17
 Identities = 34/258 (13%), Positives = 68/258 (26%), Gaps = 26/258 (10%)

Query: 87  FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT 146
           F V+  D   I L D  T      L      V     +     +     D  V + D+  
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92

Query: 147 GKC-----LKVLPAHSDPVTAVDFNRDG-TMIVTSSYDGLCRIWDASTGHCMKTLID--- 197
            +      +K+        T+     +    I  + +     I D  T    K       
Sbjct: 93  KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152

Query: 198 -------DENPPVSFVKFSPNGKFILVGTLD-NTLRLWNYSTGKILKTYTGHTNSKYCIS 249
                     P V+ +  S      +V   +   + L +Y+    LKT       ++   
Sbjct: 153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-ERFLHD 211

Query: 250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN------IIA 303
                +  +Y ++ +      +        +  +E                      + A
Sbjct: 212 GGLDGS-HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 270

Query: 304 SGALDNDRTVKIWTQEKE 321
           +  + +D    I T  + 
Sbjct: 271 TSHMGDDSVALIGTDPEG 288

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 73.7 bits (180), Expect = 3e-15
 Identities = 30/279 (10%), Positives = 68/279 (24%), Gaps = 31/279 (11%)

Query: 65  PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC-----LKTLIGHTNYVF 119
                      V     S+  R+L     D  + + D+          +K      +   
Sbjct: 54  IKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112

Query: 120 CVNFNPQSN-MIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG--------- 169
                 +    I    +     I D +T +  K+           +++ +          
Sbjct: 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH 172

Query: 170 ---TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL 226
                IV     G   + D +  + +KT        +       + ++ +         +
Sbjct: 173 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV 232

Query: 227 WNYSTGKILKT--YTGHTNSKYCISSTFSVTNG--KYIVSGSEDSCVYLWELQSR----- 277
              +    L     TG         + F        +  S   D  V L           
Sbjct: 233 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN 292

Query: 278 --KVVQKLEGHTDPVISVASHPTE-NIIASGALDNDRTV 313
             K++          + + +HP    +     L+ +  +
Sbjct: 293 AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEI 331

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 72.1 bits (176), Expect = 8e-15
 Identities = 42/318 (13%), Positives = 89/318 (27%), Gaps = 28/318 (8%)

Query: 13  YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH 72
           Y +   L+    A+   + S  GR L     D  +    L        T  + ++  +  
Sbjct: 52  YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKIGSEA 107

Query: 73  EQGVSDLVFSSDSRFL-VSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM-- 129
               +  +   + ++    A       + D  T    K             ++P+  +  
Sbjct: 108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 167

Query: 130 ----------IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVT-AVDFNRDGTMIVTSSYD 178
                     IV+      + + D      LK     ++        +      +T++  
Sbjct: 168 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA 227

Query: 179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY 238
               +   +    +  + D             N      G +  T  + + S   I    
Sbjct: 228 RNKLVVIDTKEGKLVAIEDTGGQTPH-PGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 286

Query: 239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPT 298
            GH ++ + I  +F    G  +   +  +  YL+      V   L    +   SVA    
Sbjct: 287 EGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY------VDATLNPEAEISGSVAVFDI 340

Query: 299 ENIIASGALDNDRTVKIW 316
           + +   G   +D   K  
Sbjct: 341 KAMTGDG---SDPEFKTL 355

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 69.4 bits (169), Expect = 6e-14
 Identities = 24/215 (11%), Positives = 61/215 (28%), Gaps = 16/215 (7%)

Query: 122 NFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLC 181
           +++ ++   V+      + + D  T +   VL            +  G  +     DG  
Sbjct: 27  DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKV 85

Query: 182 RIWDASTGHCMKTL-IDDENPP---VSFVKFSPNGKFILV-GTLDNTLRLWNYSTGKILK 236
            + D           I   +      +        K+ +          + +  T +  K
Sbjct: 86  NMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 145

Query: 237 TYTGHTNSKYCI---------SSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT 287
             +    +             +   S    ++IV+  E   + L +      ++  E   
Sbjct: 146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA 205

Query: 288 DPVIS-VASHPTENIIASGALDNDRTVKIWTQEKE 321
           +  +       +     + A   ++ V I T+E +
Sbjct: 206 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 240

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (120), Expect = 1e-07
 Identities = 35/284 (12%), Positives = 75/284 (26%), Gaps = 52/284 (18%)

Query: 12  PYTLTQTLNGHLRAISSVKFSHDGRLLA-SSSADKTLLTYSLS---SISNSDSTPPSPLQ 67
                +  +         ++  + R+ A  +S  +     ++     I   D T  + L+
Sbjct: 140 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK 199

Query: 68  KFT-GHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQ 126
                 E+ + D       R+ ++A++ +   +        L  +               
Sbjct: 200 TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN 259

Query: 127 SNMIVSGAFDETVRIWDVK---TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRI 183
                 G    T  + D      G   +  P ++  +        G  +   ++     +
Sbjct: 260 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYL 319

Query: 184 WD------------------------ASTGHCMKTL-------IDDENPPVSFVKFSPNG 212
           +                           +    KTL       I +  P V   +F+ +G
Sbjct: 320 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDG 379

Query: 213 KFILVGTL-------------DNTLRLWNYSTGKILKTYTGHTN 243
             +                  D TL L +    + L T TG  N
Sbjct: 380 TEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFN 423

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 73.1 bits (178), Expect = 4e-15
 Identities = 20/203 (9%), Positives = 57/203 (28%), Gaps = 8/203 (3%)

Query: 121 VNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGL 180
            + +  +   V+      + + D  + K +KV+            +  G  ++    D  
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDAR 84

Query: 181 CRIWDASTGHCMKTL----IDDENPPVSFVKFSPNGKFILVG-TLDNTLRLWNYSTGKIL 235
             + D       K        +     S        ++ + G        + +  T +  
Sbjct: 85  IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144

Query: 236 KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVAS 295
           +  +    +    + T+        +  S +   ++  ++    V  +       ++V S
Sbjct: 145 QIVSTRGMTVD--TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 202

Query: 296 HPTENIIASGALDNDRTVKIWTQ 318
                 +A G  D+     +   
Sbjct: 203 IGAAPFLADGGWDSSHRYFMTAA 225

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 73.1 bits (178), Expect = 5e-15
 Identities = 32/285 (11%), Positives = 80/285 (28%), Gaps = 34/285 (11%)

Query: 65  PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC-----LKTLIGHTNYVF 119
            ++        V     S+  R+L+    D  I + D+          +K  I   +   
Sbjct: 54  IVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112

Query: 120 CVNFNPQSNM-IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD 178
                 +    I    +     I D +T +  +++      V    ++ +  +    +  
Sbjct: 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 172

Query: 179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW----------- 227
                           L++ ++     V       F+  G  D++ R +           
Sbjct: 173 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVA 232

Query: 228 --NYSTGKI--LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR------ 277
             +    ++  L       +     +         +  S   D  + L     +      
Sbjct: 233 VIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA 292

Query: 278 -KVVQKLEGHTDPVISVASHPTENIIASGALDN-----DRTVKIW 316
            K V +L+G     + + +HP  + +      N      ++V ++
Sbjct: 293 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF 337

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 71.5 bits (174), Expect = 2e-14
 Identities = 32/277 (11%), Positives = 76/277 (27%), Gaps = 34/277 (12%)

Query: 78  DLVFSSDSR--FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF 135
             +   D    F V+  D   I L D  +   +K +      V     +     ++    
Sbjct: 23  KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGR 81

Query: 136 DETVRIWDVKTGKCLKVL-----PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGH 190
           D  + + D+   +  KV             ++     +    +  +Y             
Sbjct: 82  DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141

Query: 191 CMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLW--NYSTGKIL---------KTYT 239
             K ++      V    + P  +   +               TGK+L          T T
Sbjct: 142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 201

Query: 240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE--------------- 284
               + +     +  ++  ++ + +  + V + + + R++   ++               
Sbjct: 202 SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 261

Query: 285 GHTDPVISVASHPTENIIASGALDNDRTVKIWTQEKE 321
               PV S +     +I   G    +     W +  E
Sbjct: 262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE 298

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 28/282 (9%), Positives = 73/282 (25%), Gaps = 52/282 (18%)

Query: 12  PYTLTQTLNGHLRAISSVKFSHDGRL-LASSSADKTLLTYSLSS----ISNSDSTPPSPL 66
                Q ++     + +  +  + R+    +S +      ++      +  +     +  
Sbjct: 140 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT 199

Query: 67  QKFTGHEQGVSDLVFSSDSRFLVSA------------SDDKTIRLWDVPT----ATCLKT 110
               G    ++D  + S  R+ ++A             D +   L DV            
Sbjct: 200 VTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 259

Query: 111 LIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT 170
           +      V+  +     ++ + G   +    +     K +  L         +  +   +
Sbjct: 260 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA---WKKVAELQGQGGGSLFIKTHPKSS 316

Query: 171 MIV-------TSSYDGLCRIWDASTGHCMKTL--------IDDENPPVSFVKFSPNGKFI 215
            +         +       ++D         +        + +    V   +++  G  +
Sbjct: 317 HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV 376

Query: 216 LVGTL-------------DNTLRLWNYSTGKILKTYTGHTNS 244
                             D TL+L        L T TG  N 
Sbjct: 377 WFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKFNV 418

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.9 bits (162), Expect = 4e-13
 Identities = 20/232 (8%), Positives = 46/232 (19%), Gaps = 29/232 (12%)

Query: 28  SVKFSHDGR-LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSR 86
            +        LL            S+   S  D    S            +  + S  + 
Sbjct: 128 IIGNCASSACLLFFLFGSSAAAGLSVPGAS-DDQLTKSASCFHIHPGAAATHYLGSCPAS 186

Query: 87  FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKT 146
              S           V      +              N    ++ + A            
Sbjct: 187 LAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAG 242

Query: 147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG-------------------LCRIWDAS 187
                 +  +     A +F   G  +V    +                          AS
Sbjct: 243 ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302

Query: 188 TGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL--DNTLRLWNYSTGKILKT 237
            G     + +        +  + +G             L +++ ++ +   +
Sbjct: 303 VGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.9 bits (162), Expect = 4e-13
 Identities = 20/271 (7%), Positives = 49/271 (18%), Gaps = 38/271 (14%)

Query: 70  TGHEQGVSDLVFSSDSR---FLVSASDDKTIRLWDVPTATCLKTLIGHTNYVF--CVNFN 124
              +    D    + SR     + A    T   W           +GH+   F       
Sbjct: 16  AASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGC--GVTLGHSLGAFLSLAVAG 73

Query: 125 P----------QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG----- 169
                             G   + V ++D  T   +  +     P  +V           
Sbjct: 74  HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133

Query: 170 ---TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVS------FVKFSPNGKFILVGTL 220
               ++                    +         +           S           
Sbjct: 134 SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA 193

Query: 221 DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV 280
                          +       S     + +    G  + + +              + 
Sbjct: 194 AAPAAAGIVGA----QCTGAQNCSSQAAQANY---PGMLVWAVASSILQGDIPAAGATMK 246

Query: 281 QKLEGHTDPVISVASHPTENIIASGALDNDR 311
             ++G+     +         + +   + D 
Sbjct: 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.6 bits (156), Expect = 3e-12
 Identities = 22/208 (10%), Positives = 53/208 (25%), Gaps = 25/208 (12%)

Query: 16  TQTLNGHLRAISSVKFSHDG-RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQ 74
             + +   ++ S               S   +L    L++     +      Q       
Sbjct: 155 GASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA--APAAAGIVGAQCTGAQNC 212

Query: 75  GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA 134
                  +     + + +            AT    + G+ +     NF      +V+  
Sbjct: 213 SSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272

Query: 135 FD-------------------ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT--MIV 173
            +                   E         G+    +  +     A+   +DG      
Sbjct: 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYA 331

Query: 174 TSSYDGLCRIWDASTGHCMKTLIDDENP 201
            S+   +  I+DA++     ++  D+ P
Sbjct: 332 NSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.3 bits (137), Expect = 7e-10
 Identities = 16/173 (9%), Positives = 43/173 (24%), Gaps = 30/173 (17%)

Query: 8   ESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQ 67
            +       Q       +  + + ++ G L+ + ++             +  +   +   
Sbjct: 196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSIL--------QGDIPAAGATMKA 247

Query: 68  KFTGHEQGVSDLVFSSDSRFLVSASDDK-------------------TIRLWDVPTATCL 108
              G+E G     F S    +V+   +                                 
Sbjct: 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS 307

Query: 109 KTLIGHTNYVFCVNFNP--QSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP 159
              I + +    +       S+   + A  E + I+D  + +    +     P
Sbjct: 308 GP-ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 34/282 (12%), Positives = 77/282 (27%), Gaps = 55/282 (19%)

Query: 88  LVSASDDKTIRLWDVPTATCLKTL------------------------------IGHTNY 117
             S      +R+  VP+   L  +                                H  +
Sbjct: 14  FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPH 73

Query: 118 VFCVNFNPQ-SNMIVSGAFDETVRIWDVKTGKCLKVLP-AHSDPVTAVDFNRDG-TMIVT 174
           +   +       + ++   +  V    +   K  K+    +   +  +   +   T  V 
Sbjct: 74  ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF 133

Query: 175 SSYDGL------CRIWDASTGHCMKTLIDDENPPVSF----------VKFSPNGKFILVG 218
            + + +         +     + M T ID E   V++                GK+    
Sbjct: 134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATST 193

Query: 219 TLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK 278
             ++   +    T +  + +    N +       +V  G +   G     V +      +
Sbjct: 194 CYNSERAVDLAGTMRNDRDWVVVFNVERIA---AAVKAGNFKTIGDSKVPV-VDGRGESE 249

Query: 279 VVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK 320
             + +    +P     S   +  IA+G L    TV +   +K
Sbjct: 250 FTRYIPVPKNPHGLNTSPDGKYFIANGKLSP--TVSVIAIDK 289

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 26/243 (10%), Positives = 68/243 (27%), Gaps = 31/243 (12%)

Query: 26  ISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDS 85
           + +    + G+   S+  +        S  +   +      + +                
Sbjct: 178 LDNTDADYTGKYATSTCYN--------SERAVDLAGTMRNDRDWVVVFNVERIAAAVKAG 229

Query: 86  RFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK 145
            F     D K   +     +   + +    N             I +G    TV +  + 
Sbjct: 230 NFKT-IGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAID 288

Query: 146 TGKCLKVLPAHSDPVTAVDFN-RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVS 204
             K   +     +    +      G   + +++DG    +           ID +   V 
Sbjct: 289 --KLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT-------LFIDSQ---VC 336

Query: 205 FVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS 264
               +   K      ++   +  +      ++   GH ++   ++ +    +GK++V  S
Sbjct: 337 KWNIADAIKHYNGDRVNYIRQKLD------VQYQPGHNHA--SLTESRDA-DGKWLVVLS 387

Query: 265 EDS 267
           + S
Sbjct: 388 KFS 390

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 57.2 bits (136), Expect = 5e-10
 Identities = 32/244 (13%), Positives = 77/244 (31%), Gaps = 7/244 (2%)

Query: 75  GVSDLVFSSDSRFL-VSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSG 133
                V S D   + V+ +    + + D  T   + T+   ++            + V+ 
Sbjct: 33  NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTN 92

Query: 134 AFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK 193
               T+ + D  +      +     P+          + VT++ D    + +  T   + 
Sbjct: 93  MASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152

Query: 194 TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFS 253
           T+    +P    +  +P+G  + V   D+       +    +        +   I+    
Sbjct: 153 TVSVGRSP--KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPE 210

Query: 254 VTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTEN-IIASGALDNDRT 312
            T           + V + +  + K+  ++    DP   +A  P    +  + +  N  T
Sbjct: 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPA-GIAVTPDGKKVYVALSFCN--T 267

Query: 313 VKIW 316
           V + 
Sbjct: 268 VSVI 271

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 57.2 bits (136), Expect = 5e-10
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG-TMIVTSSYDGLCRIWDASTG 189
           ++ +  + + + DV + K    +P  S+P      + DG  + V +++     I D +T 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 190 HCM 192
           + +
Sbjct: 65  NVI 67

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 51.0 bits (120), Expect = 5e-08
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 2/103 (1%)

Query: 100 WDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDP 159
               +      +    + +       ++ +     +  TV + D  T K    +P   DP
Sbjct: 187 TVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP 246

Query: 160 VTAVDFNRDG-TMIVTSSYDGLCRIWDASTGHCMKTLIDDENP 201
              +    DG  + V  S+     + D +T     T+   +NP
Sbjct: 247 -AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 96  TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSN-MIVSGAFDETVRIWDVKTGKCLKVLP 154
           T+ + D  T      +         +   P    + V+ +F  TV + D  T      + 
Sbjct: 225 TVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

Query: 155 AHSDPVTAVDF 165
              +P  +  F
Sbjct: 284 VGKNPYASGQF 294

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 64  SPLQKFTGHEQGVSDLVFSSDSRFL-VSASDDKTIRLWDVPTATCLKTL 111
               +        + +  + D + + V+ S   T+ + D  T T   T+
Sbjct: 235 KITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 9/69 (13%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 221 DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV 280
            + + + + ++ K+  T    +N    + +  S    K  V+ +  + V + +  +  V+
Sbjct: 11  SDNISVIDVTSNKVTATIPVGSN---PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI 67

Query: 281 QKLEGHTDP 289
             +   + P
Sbjct: 68  ATVPAGSSP 76

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 261 VSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIW 316
           ++ SE   + + ++ S KV   +   ++P+ +V S     +  + A  N   V I 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSN--DVSII 59

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 51.4 bits (121), Expect = 5e-08
 Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 6/115 (5%)

Query: 89  VSASDDKTIRLWDVPTATCLKTL--IGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVK 145
           +++ + + I +W++     L     +     V  +  +P    + V    +  V  + + 
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 146 TGKCLKVLPAHSDP---VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID 197
                    A S     +T +  +  G  +   SY+                ++D
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD 122

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 27/305 (8%), Positives = 80/305 (26%), Gaps = 32/305 (10%)

Query: 37  LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL-VSASDDK 95
           +  +S   + +  ++L      +      L +       V  +V S D R+L V    + 
Sbjct: 6   VYIASPESQQIHVWNL------NHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF 59

Query: 96  TIRLWDVPTATCLKTLIGHT---NYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV 152
            +  + +       T    +     +  ++ + Q   +  G+++                
Sbjct: 60  RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG 119

Query: 153 LPAH----SDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL------IDDENPP 202
           +           +A     + T+ V +       ++  S    +           +   P
Sbjct: 120 VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP 179

Query: 203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT--------YTGHTNSKYCISSTFSV 254
              V          V  L++++ +W                      +++++      + 
Sbjct: 180 RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 239

Query: 255 TNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT---DPVISVASHPTENIIASGALDNDR 311
                       S + ++ +     V   EG               +   + + A     
Sbjct: 240 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA-AGQKSH 298

Query: 312 TVKIW 316
            + ++
Sbjct: 299 HISVY 303

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 49.1 bits (115), Expect = 3e-07
 Identities = 15/178 (8%), Positives = 45/178 (25%), Gaps = 5/178 (2%)

Query: 125 PQSNMIVSGAFDETVRIWDVKTGKCLKVLP--AHSDPVTAVDFNRDG-TMIVTSSYDGLC 181
            +  + ++    + + +W++     L +         V  +  + D   + V    +   
Sbjct: 2   LKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRV 61

Query: 182 RIWDASTGHCMKTLIDDENPPVS--FVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
             +  +      T   +   P S   +     G+F+ VG+ +            +     
Sbjct: 62  LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121

Query: 240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHP 297
                     S     + + +   +           S       +   +      + P
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP 179

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 29/311 (9%), Positives = 78/311 (25%), Gaps = 34/311 (10%)

Query: 14  TLTQTLNGHLRAISSVKFSHDGRLL-ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGH 72
           TLTQ +      +  +  S D R L      +  +L Y ++                +  
Sbjct: 28  TLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP-----DDGALTFAAESAL 81

Query: 73  EQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVN-----FNPQS 127
              ++ +      +F+   S +                ++     +   +      + ++
Sbjct: 82  PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT 141

Query: 128 NMIVSGAFDETVRIWDVKTGKCLKVLPAH------SDPVTAVDFNRDGTMIVTSSYDGLC 181
             + +   D          G  +   PA       + P   V    +      +  +   
Sbjct: 142 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV 201

Query: 182 RIWDASTGHCMKTL----------IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYST 231
            +W+    H                 D                       + + +++ S 
Sbjct: 202 DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 261

Query: 232 GKILKTYTGHTNS-KYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR----KVVQKLEGH 286
              + +  G   +           +    I +G +   + ++E+           +    
Sbjct: 262 DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG 321

Query: 287 TDPV-ISVASH 296
             P+ + V +H
Sbjct: 322 QGPMWVVVNAH 332

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 29/284 (10%), Positives = 71/284 (25%), Gaps = 30/284 (10%)

Query: 14  TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHE 73
            +T         + ++  + DG +  ++     +++           TP    Q     E
Sbjct: 20  IITSFPVNT--FLENLASAPDGTIFVTNHEVGEIVSI----------TPDGNQQIHATVE 67

Query: 74  QGVSDLVFSSDSRFLVSASDDKTI---RLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMI 130
             VS L F+S+   + +  +  +I    L            +    ++  +     +  +
Sbjct: 68  GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYL 127

Query: 131 VSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGL-------CRI 183
            + ++   + + DV        L       +  +        +    + L         +
Sbjct: 128 TADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLL 187

Query: 184 WDASTGHCMKTLIDDENPPVSF---VKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG 240
                    K    +     +      F   G       + N++                
Sbjct: 188 LRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAP-DRSTTIIAQA 246

Query: 241 HTNSKYCISSTFSVTNGK----YIVSGSEDSCVYLWELQSRKVV 280
                   +  F  T G     Y+V+           +    VV
Sbjct: 247 EQGVIGSTAVAFGQTEGDCTAIYVVTNGGMFLPPPTGVVPANVV 290

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 30/245 (12%), Positives = 67/245 (27%), Gaps = 20/245 (8%)

Query: 17  QTLNGHLRAISSVKFSHDGRLLASSS----ADKTLLTYSLSSISNSDSTPPSPLQKFTGH 72
           + +  +L  I++ +F  DGR +A       +  T   Y  +  +           K TG 
Sbjct: 34  RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGR 93

Query: 73  EQGVSDLVFSSDSRFLVSA---SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM 129
                   F  D   ++S        ++          +  +  +      + F     +
Sbjct: 94  RMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRV 153

Query: 130 IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG 189
           I    F+           +    +  +S     +                +  I D    
Sbjct: 154 IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGF 213

Query: 190 HCM----------KTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT 239
             +          +      +        + +G+ I + +   ++ ++N  T KI K   
Sbjct: 214 GQIYSTDLDGKDLRKHTSFTDYYPRH--LNTDGRRI-LFSKGGSIYIFNPDTEKIEKIEI 270

Query: 240 GHTNS 244
           G   S
Sbjct: 271 GDLES 275

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 18/156 (11%), Positives = 38/156 (24%), Gaps = 13/156 (8%)

Query: 95  KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP 154
             +        +    +            +  S   +    +    I   +  K      
Sbjct: 300 NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359

Query: 155 AHSDP-VTAVDFNRDGTMIVTSSYDG-------LCRI--WDASTGHCMKTLIDDENPPVS 204
                 V  ++      +   S+          L +I   D +   C+   ++ E     
Sbjct: 360 TKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYY 419

Query: 205 FVKFSPNGKFILV---GTLDNTLRLWNYSTGKILKT 237
            V FS   K+  +   G       L +    K L+ 
Sbjct: 420 SVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRV 455

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 28/236 (11%), Positives = 58/236 (24%), Gaps = 16/236 (6%)

Query: 17  QTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGV 76
             ++   + + S  +S DG  LA  + +         S     +     +++     +  
Sbjct: 32  FVVHRSPQPLMSPAWSPDGSKLAYVTFESG------RSALVIQTLANGAVRQVASFPRHN 85

Query: 77  SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF- 135
               FS D   L  A          V      +                  +        
Sbjct: 86  GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS 145

Query: 136 ----DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC 191
                  V   ++  G   ++    S    A   +    M++ SS  G   I        
Sbjct: 146 DQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 205

Query: 192 MKTLIDDENPPVSFVKFSPNGKFILVGTLDNT---LRLWNYSTGKILKTYTGHTNS 244
              ++            +PNG  ++  +       L L + + G+           
Sbjct: 206 GVQVLSS-TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS-TDGRFKARLPATDGQ 259

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 465

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 13/130 (10%)

Query: 136 DETVRIWDVKTGKCLKVLPAHSD---PVTAVDFNRDGTMIVTS---------SYDGLCRI 183
             TVR+W+V+T     ++             + + D    + S         SY G   +
Sbjct: 36  KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95

Query: 184 WDASTGHC-MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT 242
                G        +  N  + +  + P G+ ++    +N     +     I    TG  
Sbjct: 96  SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKE 155

Query: 243 NSKYCISSTF 252
              Y   S +
Sbjct: 156 GVIYNGLSDW 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.78
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.66
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.63
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.59
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.45
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.36
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.35
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.35
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.35
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.33
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.3
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.29
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.25
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.24
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.22
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.2
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.19
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.06
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.03
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.01
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.89
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.75
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.68
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.44
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.33
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.23
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.03
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.89
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.52
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.39
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.19
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.1
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.06
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.03
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.87
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.8
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.67
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.65
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.52
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.21
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.13
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.76
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.61
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.36
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.1
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.89
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.82
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.8
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.17
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.12
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.9
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.74
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.65
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.19
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	83.7
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	83.48
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.44

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-47  Score=313.70  Aligned_cols=285  Identities=17%  Similarity=0.340  Sum_probs=246.1

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLW  100 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iw  100 (321)
                      +|...|++++|+|+|++|++|+ ||.|++|++......   .........+|...|.+++|+|++++|++|+.|+.|++|
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~---~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iw  124 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK---SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC---SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc---ceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccc
Confidence            7999999999999999999998 899999998653221   111223345789999999999999999999999999999


Q ss_pred             ecCCc--ceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCC
Q 020798          101 DVPTA--TCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYD  178 (321)
Q Consensus       101 d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  178 (321)
                      |+...  +....+..|...+..++++|++..+++++.++.|++|+++++++......|...+.+++|++++..+++++.|
T Consensus       125 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d  204 (337)
T d1gxra_         125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            98754  4456677899999999999999999999999999999999999988888999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe
Q 020798          179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK  258 (321)
Q Consensus       179 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (321)
                      +.+++||+++++.+...  .+...+..++|+|+++++++++.|+.+++||+++++... ...|...+..   ....++++
T Consensus       205 ~~v~i~d~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~---v~~s~~g~  278 (337)
T d1gxra_         205 NTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLS---LKFAYCGK  278 (337)
T ss_dssp             SEEEEEETTTTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEE---EEECTTSS
T ss_pred             ccccccccccceeeccc--ccccceEEEEEcccccccceecccccccccccccccccc-ccccccccce---EEECCCCC
Confidence            99999999998876655  345678999999999999999999999999999887654 4455555433   33457899


Q ss_pred             EEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          259 YIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      +|++|+.||.|++||+.+++.+..+. |..+|++++|+|++++||+|+  .|+.|+|||+
T Consensus       279 ~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s--~D~~I~vWdl  335 (337)
T d1gxra_         279 WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGS--GDKKATVYEV  335 (337)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEE--TTSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEe--CCCeEEEEEE
Confidence            99999999999999999998887655 778999999999999999998  4589999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-47  Score=308.83  Aligned_cols=288  Identities=32%  Similarity=0.605  Sum_probs=258.0

Q ss_pred             eeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           16 TQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        16 ~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      +..|+||.++|++++|+|++++|++|+.|+.|++|++..        ...+..+.+|...|.+++|+|++.+++++..++
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~--------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--------GDFERTLKGHTDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--------CCEEEEEeCCCCcEEEEeeeccccccccccccc
Confidence            456899999999999999999999999999999998753        235667889999999999999999999999999


Q ss_pred             cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE
Q 020798           96 TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      .+.+|+....+....+.+|...+.++.++|+++.+++++.|+.+++||+++++....+..|...+.+++|+|++..++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1          82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEE
Confidence            99999998888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC--------------------CCEEEEEecCCeEEEEeCCCCcEE
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN--------------------GKFILVGTLDNTLRLWNYSTGKIL  235 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------g~~l~~~~~d~~i~i~d~~~~~~~  235 (321)
                      +.|+.+++|+..+++....+. .+...+..+.++|+                    +.++++++.|+.|++||+++++.+
T Consensus       162 ~~d~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  240 (317)
T d1vyhc1         162 SNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  240 (317)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             eCCCeEEEEeeccceeeEEEe-cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence            999999999999887665543 34455667777654                    457889999999999999999999


Q ss_pred             EEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEE
Q 020798          236 KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKI  315 (321)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~i  315 (321)
                      ..+.+|...+..   ....+++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|++|+.  |+.|+|
T Consensus       241 ~~~~~~~~~v~~---~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~--Dg~i~i  315 (317)
T d1vyhc1         241 MTLVGHDNWVRG---VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV--DQTVKV  315 (317)
T ss_dssp             EEEECCSSCEEE---EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET--TSEEEE
T ss_pred             EEEeCCCCCEEE---EEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC--CCeEEE
Confidence            999988776544   334578999999999999999999999999999999999999999999999999984  589999


Q ss_pred             cc
Q 020798          316 WT  317 (321)
Q Consensus       316 w~  317 (321)
                      ||
T Consensus       316 Wd  317 (317)
T d1vyhc1         316 WE  317 (317)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-45  Score=309.98  Aligned_cols=294  Identities=32%  Similarity=0.577  Sum_probs=236.1

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCC------C----CCCCcccccccccccEEEEEECCCCCEEEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSD------S----TPPSPLQKFTGHEQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~------~----~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~   90 (321)
                      +|.+.|+|++|+|||++||+|+ |+.|++|++.+.....      .    ...........|...|.+++|+|++++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            6999999999999999999987 8999999986432100      0    000112233568888999999999999999


Q ss_pred             EeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC
Q 020798           91 ASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT  170 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (321)
                      |+.||.|++||...++......+|...|.++.+++++..+++++.++.+++||.++.........+...+....+.+++.
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK  218 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCC
Confidence            99999999999999998888999999999999999999999999999999999999887777766555444444445788


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeeeec------cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEE---------
Q 020798          171 MIVTSSYDGLCRIWDASTGHCMKTLI------DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKIL---------  235 (321)
Q Consensus       171 ~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~---------  235 (321)
                      +|++++.|+.+++||.+++.....+.      ..+...+..++|+|++++|++++.|+.|++||+++++..         
T Consensus       219 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  298 (388)
T d1erja_         219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG  298 (388)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred             eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccc
Confidence            99999999999999999877655442      234567899999999999999999999999998765432         


Q ss_pred             ---EEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEE------ecCCCceEEEEe
Q 020798          236 ---KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVA------SHPTENIIASGA  306 (321)
Q Consensus       236 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~------~~p~~~~l~s~~  306 (321)
                         .....|...+.   .....+++++|++|+.||.|++||+++++++..+++|.++|++++      |+|++.+||+|+
T Consensus       299 ~~~~~~~~~~~~v~---~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s  375 (388)
T d1erja_         299 TCEVTYIGHKDFVL---SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  375 (388)
T ss_dssp             CEEEEEECCSSCEE---EEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             ceeeecccccceEE---EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence               22333444333   333457899999999999999999999999999999999999986      578999999998


Q ss_pred             ecCCccEEEccccc
Q 020798          307 LDNDRTVKIWTQEK  320 (321)
Q Consensus       307 ~d~~~~i~iw~~~~  320 (321)
                        .||+|+||++||
T Consensus       376 --~Dg~I~iW~~~k  387 (388)
T d1erja_         376 --GDCKARIWKYKK  387 (388)
T ss_dssp             --TTSEEEEEEEEE
T ss_pred             --CCCEEEEEeeee
Confidence              458999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-43  Score=289.66  Aligned_cols=292  Identities=24%  Similarity=0.458  Sum_probs=248.9

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      .+..++|+||.+.|++++|+|++++||+|+.||.|++|++..        ...+..+..|...|.+++|+|+++++++|+
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~--------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  116 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT--------TNKVHAIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--------TEEEEEEECSCSCEEEEEECTTSSEEEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccc--------ceeEEEEecccccEEeeEeeccceeeeeec
Confidence            356788999999999999999999999999999999998753        234667788999999999999999999999


Q ss_pred             CCCcEEEEecCCcc----eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC
Q 020798           93 DDKTIRLWDVPTAT----CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        93 ~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      .|+.+++|+.....    ....+.+|..........+ +..+.....+.....+.............+...+....+.+.
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD  195 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT
T ss_pred             ccceeecccccccccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEeeeccccc
Confidence            99999999976543    3445566776665554444 467777888999999998888877777788889999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEE
Q 020798          169 GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCI  248 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  248 (321)
                      +..+++++.|+.+++||+++++++..+. .+...+.+++|+|++++|++++.|+.|++||++..+.+..+....... .+
T Consensus       196 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~-~i  273 (340)
T d1tbga_         196 TRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-GI  273 (340)
T ss_dssp             SSEEEEEETTTEEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS-CE
T ss_pred             cceeEEeecCceEEEEECCCCcEEEEEe-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccC-ce
Confidence            9999999999999999999988777654 466789999999999999999999999999999988877765433222 23


Q ss_pred             EeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          249 SSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ......+++.+|++|+.||.|++||+.+++.+..+.+|.++|++++|+|++.+|++||.  ||.|+|||
T Consensus       274 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~--Dg~v~iWd  340 (340)
T d1tbga_         274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW--DSFLKIWN  340 (340)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET--TSCEEEEC
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc--CCEEEEeC
Confidence            33444578999999999999999999999999999999999999999999999999984  58999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-43  Score=290.23  Aligned_cols=283  Identities=17%  Similarity=0.238  Sum_probs=234.0

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      +.+.+..++++|+|+.|+.++ ++.+.+|++..        ......+.+|...|.+++|+|+|++|++|+.||.|++||
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~--------~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd   86 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS--------LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD   86 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC--------SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC--------CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeee
Confidence            334566789999999999986 56788998753        234556789999999999999999999999999999999


Q ss_pred             cCCccee--eeeecCcccEEEEEECCCCCEEEEeeC--CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCE-EEEEe
Q 020798          102 VPTATCL--KTLIGHTNYVFCVNFNPQSNMIVSGAF--DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTM-IVTSS  176 (321)
Q Consensus       102 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~  176 (321)
                      +.+....  ..+.+|...|.+++|+|++++|++++.  +..+++|++++++....+..|...|.+++|+|+++. +++|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs  166 (311)
T d1nr0a1          87 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS  166 (311)
T ss_dssp             SSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred             eeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccc
Confidence            9887643  456789999999999999999998875  456999999999888888999999999999999884 78899


Q ss_pred             CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec-------cCCceeEEE
Q 020798          177 YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG-------HTNSKYCIS  249 (321)
Q Consensus       177 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~  249 (321)
                      .|+.|++||+++++..... ..+...+..+.++|+++++++++.|+.|++||..++..+..+..       |...+.+  
T Consensus       167 ~d~~i~i~d~~~~~~~~~~-~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~--  243 (311)
T d1nr0a1         167 DDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG--  243 (311)
T ss_dssp             TTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE--
T ss_pred             ccccccccccccccccccc-ccccccccccccCccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            9999999999988766554 34567899999999999999999999999999999888777643       3344333  


Q ss_pred             eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCC-CeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          250 STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD-PVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                       ....+++++|++|+.||.|+|||++++++++.+..|.. ....+.+.+++..|++++.  ||.|++||.|
T Consensus       244 -~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~--dG~i~~wd~d  311 (311)
T d1nr0a1         244 -LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA--NGFINFVNPE  311 (311)
T ss_dssp             -EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET--TCCEEEEETT
T ss_pred             -cccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEEC--CCEEEEEeCC
Confidence             33457899999999999999999999999988877643 2233344445668898884  5899999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-42  Score=289.46  Aligned_cols=286  Identities=17%  Similarity=0.249  Sum_probs=226.8

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWD  101 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  101 (321)
                      +.++|+|++|+|+|++||+|+.|+.|++|++...      ....+..+.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~------~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT------EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCC------CEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence            4578999999999999999999999999987531      1224566789999999999999999999999999999999


Q ss_pred             cCCccee--eeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEE----EEEEeCCCCCeeEEEEccCCCEEEEE
Q 020798          102 VPTATCL--KTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKC----LKVLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus       102 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      +.++...  ..+.+|...+.+++|+|+++.|++++.|+.+++|++.....    ......|...|.+++|+|++.+|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecc
Confidence            9876543  34567888999999999999999999999999998865432    23345688899999999999999999


Q ss_pred             eCCCeEEEEeCCCCce-----------------eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          176 SYDGLCRIWDASTGHC-----------------MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      +.|+.+++||......                 .......+...+..++|+|+|++|++++.|+.|++||+.+++.+..+
T Consensus       160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~  239 (371)
T d1k8kc_         160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  239 (371)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee
Confidence            9999999999864321                 11112234556889999999999999999999999999999999999


Q ss_pred             eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEccc--ceEEE-----------------------------------
Q 020798          239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQS--RKVVQ-----------------------------------  281 (321)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~-----------------------------------  281 (321)
                      ..|..++.++.  | .+++++|++|. |+.+++|....  .....                                   
T Consensus       240 ~~~~~~v~s~~--f-s~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (371)
T d1k8kc_         240 ASETLPLLAVT--F-ITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA  315 (371)
T ss_dssp             ECSSCCEEEEE--E-EETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred             ecccccceeee--e-cCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccc
Confidence            88877655443  3 46888888765 67666665432  11100                                   


Q ss_pred             ----EecCCCCCeEEEEecCCC----ceEEEEeecCCccEEEcccc
Q 020798          282 ----KLEGHTDPVISVASHPTE----NIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       282 ----~~~~h~~~v~~~~~~p~~----~~l~s~~~d~~~~i~iw~~~  319 (321)
                          ....|.++|+++++.|.+    ..|+|+|.  ||.|+|||++
T Consensus       316 ~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~--Dg~v~iW~~~  359 (371)
T d1k8kc_         316 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM--DGGMSIWDVR  359 (371)
T ss_dssp             --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET--TSEEEEEEHH
T ss_pred             ccceecccccCCEEEEEEeCCCCcceEEEEEEcC--CCeEEEEeCC
Confidence                001388899999998764    35889984  5899999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-41  Score=279.66  Aligned_cols=255  Identities=21%  Similarity=0.275  Sum_probs=217.1

Q ss_pred             cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      .....+.+.+|...|++++|+|+|++||+|+.|+.|++|++....      ......+..|...|.+++|+|++++|+++
T Consensus        47 ~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~d~~~l~~~  120 (311)
T d1nr0a1          47 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT------HILKTTIPVFSGPVKDISWDSESKRIAAV  120 (311)
T ss_dssp             CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT------CCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc------cccccccccccCccccccccccccccccc
Confidence            345566788999999999999999999999999999999886421      12234567899999999999999999988


Q ss_pred             eCC--CcEEEEecCCcceeeeeecCcccEEEEEECCCCCE-EEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC
Q 020798           92 SDD--KTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        92 ~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      +.+  ..+++|++++++....+.+|...|.+++|+|++++ |++|+.|+.|++||+++++....+..|..+|+++.|+|+
T Consensus       121 ~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~  200 (311)
T d1nr0a1         121 GEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD  200 (311)
T ss_dssp             ECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcc
Confidence            764  56999999999888888999999999999999875 788999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeecc------CCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccC
Q 020798          169 GTMIVTSSYDGLCRIWDASTGHCMKTLID------DENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT  242 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  242 (321)
                      ++++++++.|+.+++||.+++.....+..      .+...|.+++|+|++++|++|+.|+.|+|||++++++++.+..+.
T Consensus       201 ~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~  280 (311)
T d1nr0a1         201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT  280 (311)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC
Confidence            99999999999999999988766554322      245679999999999999999999999999999999999887665


Q ss_pred             Cce-eEEEeEEEecCCeEEEEeCCCCeEEEEEcc
Q 020798          243 NSK-YCISSTFSVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       243 ~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      ... ..+...   .+++.|++++.||.|++||.+
T Consensus       281 ~~~~~~~~~~---~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         281 RIEDQQLGII---WTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SGGGCEEEEE---ECSSCEEEEETTCCEEEEETT
T ss_pred             CccceEEEEE---ecCCEEEEEECCCEEEEEeCC
Confidence            432 222222   356678999999999999963

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.4e-41  Score=272.92  Aligned_cols=285  Identities=18%  Similarity=0.253  Sum_probs=220.1

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCccccc-ccccccEEEEEECCCCCEEEEEe
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKF-TGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      ++.+.++||.++|++++|+|+|++|++|+.|+.|++|++...        ..+..+ .+|...|.+++|+|++++ ++++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~--------~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~   73 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG--------ISNRVFPDVHATMITGIKTTSKGDL-FTVS   73 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------CEEECSSCSCSSCEEEEEECTTSCE-EEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC--------cEEEEEcCCCCCcEEEEEeecccee-eccc
Confidence            467899999999999999999999999999999999987542        223333 468899999999999874 5667


Q ss_pred             CCCcEEEEecCCcce---eeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCC
Q 020798           93 DDKTIRLWDVPTATC---LKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG  169 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (321)
                      .|+.+++|+......   ......+...+.+++++|+++.+++++ ++.+++|+..  +.....  ....+.+++|+|++
T Consensus        74 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~  148 (299)
T d1nr0a2          74 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDK  148 (299)
T ss_dssp             TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTS
T ss_pred             ceeeEEEeccCCccccccccccccccccccccccccccccccccc-cccccccccc--cccccc--cccccccccccccc
Confidence            899999999865432   122234677788999999998776655 5789999854  333222  34467889999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEE---EeccCCcee
Q 020798          170 TMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT---YTGHTNSKY  246 (321)
Q Consensus       170 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~  246 (321)
                      +.+++++.|+.+++||+++++........+...+..++|+|++++|++++.|+.|++||+.++..+..   +..|...+.
T Consensus       149 ~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~  228 (299)
T d1nr0a2         149 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA  228 (299)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999877654444445567899999999999999999999999999988765543   344555544


Q ss_pred             EEEeEEEecCCeEEEEeCCCCeEEEEEcccceE--EEEecCC-CCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV--VQKLEGH-TDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       247 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h-~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      ++   ...+++.+|++|+.||.|++||++++..  ......| ...|.++.| +++++|++||.  |+.|++||+
T Consensus       229 ~l---~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~--D~~i~iWdl  297 (299)
T d1nr0a2         229 CV---SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQ--DSNIKFWNV  297 (299)
T ss_dssp             EE---EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEET--TSCEEEEEC
T ss_pred             cc---cccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeC--CCEEEEEec
Confidence            43   3457899999999999999999987643  2333344 445666655 56789999984  589999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=263.21  Aligned_cols=292  Identities=27%  Similarity=0.522  Sum_probs=224.7

Q ss_pred             cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSA   91 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~   91 (321)
                      +++..+.|+||.+.|.+ +++++|++||||+.|+.|++|++..        .+++..+.+|...|.+++|+++  +|+++
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~--------~~~~~~~~~h~~~V~~v~~~~~--~l~s~   73 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT--------GKCLRTLVGHTGGVWSSQMRDN--IIISG   73 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT--------CCEEEECCCCSSCEEEEEEETT--EEEEE
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC--------CCEEEEEeCCCCCEEEEEeCCC--ccccc
Confidence            45566789999999865 4677899999999999999998753        3456788899999999999874  89999


Q ss_pred             eCCCcEEEEecCCcceeeeeecCcccE--------------------------------------EEEEECCCCCEEEEe
Q 020798           92 SDDKTIRLWDVPTATCLKTLIGHTNYV--------------------------------------FCVNFNPQSNMIVSG  133 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~~~~~~~~~~~v--------------------------------------~~~~~~~~~~~l~~~  133 (321)
                      +.|+.+++|+............+...+                                      ......+....++.+
T Consensus        74 s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (342)
T d2ovrb2          74 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG  153 (342)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE
T ss_pred             eecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeee
Confidence            999999999986544322111111000                                      011222345577888


Q ss_pred             eCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCC
Q 020798          134 AFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK  213 (321)
Q Consensus       134 ~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~  213 (321)
                      +.|+.|++||.+..+.+..+..|...+..+  .+++..+++++.||.|++||++.++.+.... .+...+..+.+  +++
T Consensus       154 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~--~~~  228 (342)
T d2ovrb2         154 AYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMEL--KDN  228 (342)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEE--ETT
T ss_pred             cCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEec-ccccceeEEec--CCC
Confidence            999999999999998888888887666554  4577899999999999999999888776654 44555666555  556


Q ss_pred             EEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEec-----CCCC
Q 020798          214 FILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLE-----GHTD  288 (321)
Q Consensus       214 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~h~~  288 (321)
                      +|++++.|+.|++||+...+....+..+......+...  ..++.++++|+.||.|++||+++++.++.+.     +|..
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~  306 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG  306 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE--EECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred             EEEEEcCCCEEEEEecccccccccccccceeeeceeec--ccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCC
Confidence            99999999999999999988888887654433333222  2367899999999999999999998887763     5778


Q ss_pred             CeEEEEecCCCceEEEEeecC--CccEEEcccccC
Q 020798          289 PVISVASHPTENIIASGALDN--DRTVKIWTQEKE  321 (321)
Q Consensus       289 ~v~~~~~~p~~~~l~s~~~d~--~~~i~iw~~~~~  321 (321)
                      +|++++|+|++.+||+|+.|+  +..|++||.+.|
T Consensus       307 ~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence            899999999999999998653  235999998764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-39  Score=267.01  Aligned_cols=286  Identities=17%  Similarity=0.233  Sum_probs=224.1

Q ss_pred             cEEEEEECCCCCEEEEecCCce-EEEeeccccCCCCCCCCCccccccccc-ccEEEEEECC--CCCEEEEEeCCCcEEEE
Q 020798           25 AISSVKFSHDGRLLASSSADKT-LLTYSLSSISNSDSTPPSPLQKFTGHE-QGVSDLVFSS--DSRFLVSASDDKTIRLW  100 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~-v~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~--~~~~l~~~~~d~~i~iw  100 (321)
                      .+++++|+|+|+.||.++.+.. ++.|+...      ........+.+|. ..|++++|+|  ++++|++|+.||+|++|
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~------~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iW   92 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGD------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   92 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSC------CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCC------CCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEe
Confidence            4578899999999998865543 44554321      2223455667774 6799999998  56899999999999999


Q ss_pred             ecCCccee--------eeeecCcccEEEEEECCCCCEEEEee--CCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC
Q 020798          101 DVPTATCL--------KTLIGHTNYVFCVNFNPQSNMIVSGA--FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT  170 (321)
Q Consensus       101 d~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (321)
                      |+...+..        ..+..|...|.+++|+++++.+++++  .++.+++|+..+++++..+..|...+.+++|+|++.
T Consensus        93 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  172 (325)
T d1pgua1          93 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP  172 (325)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSS
T ss_pred             eecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccccccccccccccc
Confidence            98654422        22456788899999999999987765  467899999999999999999999999999999887


Q ss_pred             E-EEEEeCCCeEEEEeCCCCceeeeecc--CCCCCeEEEEEccC-CCEEEEEecCCeEEEEeCCCCcEEEEEeccCCcee
Q 020798          171 M-IVTSSYDGLCRIWDASTGHCMKTLID--DENPPVSFVKFSPN-GKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKY  246 (321)
Q Consensus       171 ~-l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~-g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  246 (321)
                      . +++++.|+.+++||.+..+.......  .+...+.+++|+|+ +.++++++.|+.|++||+++++.+..+.+|.....
T Consensus       173 ~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~  252 (325)
T d1pgua1         173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ  252 (325)
T ss_dssp             CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC
T ss_pred             ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccc
Confidence            4 67899999999999987765554432  34566899999996 68899999999999999999999999988776654


Q ss_pred             EEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCC--eEEEEecCC-CceEEEEeecCCccEEEccc
Q 020798          247 CISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDP--VISVASHPT-ENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       247 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~p~-~~~l~s~~~d~~~~i~iw~~  318 (321)
                      .+......+++++|++++.|+.|+|||+++++++..+..|...  +..+++.+. +.+|++||.  |+.|++||+
T Consensus       253 ~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--dg~i~vwdl  325 (325)
T d1pgua1         253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL--DGTLNFYEL  325 (325)
T ss_dssp             SCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET--TSCEEEEET
T ss_pred             cceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEEC--CCEEEEEEC
Confidence            4444434468999999999999999999999998887766543  344444433 347888884  589999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-38  Score=258.87  Aligned_cols=244  Identities=22%  Similarity=0.345  Sum_probs=213.6

Q ss_pred             eccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcE
Q 020798           18 TLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTI   97 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i   97 (321)
                      ...+|...|.+++|+|+|++|++|+.|+.|++|++...      .......+..|...+..+.|+|++.++++++.|+.|
T Consensus        92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i  165 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEeeccccccccccccc------cccccccccccccccccccccccccccccccccccc
Confidence            45689999999999999999999999999999987532      223345667889999999999999999999999999


Q ss_pred             EEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeC
Q 020798           98 RLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSY  177 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  177 (321)
                      ++|++.++++.....+|...+.+++|++++..+++++.|+.+++||+++++.+..+. |...|.+++|+|+++.+++++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~  244 (337)
T d1gxra_         166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME  244 (337)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc
Confidence            999999999888888999999999999999999999999999999999998877664 7889999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCC
Q 020798          178 DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNG  257 (321)
Q Consensus       178 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (321)
                      |+.+++||+++++....  ..+...+..++|+|+|++|++++.|+.|++||+.+++.+..+. |...+.+   +...+++
T Consensus       245 d~~i~i~d~~~~~~~~~--~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~---~~~s~d~  318 (337)
T d1gxra_         245 SSNVEVLHVNKPDKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLS---CDISVDD  318 (337)
T ss_dssp             TSCEEEEETTSSCEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEE---EEECTTS
T ss_pred             ccccccccccccccccc--cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEE---EEEeCCC
Confidence            99999999998775543  3456779999999999999999999999999999999887765 4444433   3345789


Q ss_pred             eEEEEeCCCCeEEEEEc
Q 020798          258 KYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       258 ~~l~~~~~dg~i~vwd~  274 (321)
                      ++|++|+.||.|+|||+
T Consensus       319 ~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         319 KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEEEETTSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEEE
Confidence            99999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-37  Score=254.58  Aligned_cols=253  Identities=29%  Similarity=0.529  Sum_probs=224.4

Q ss_pred             cccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           65 PLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        65 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      ....+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++++|++..++++..++.+.+|+.
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeE
Q 020798          145 KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTL  224 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i  224 (321)
                      ...+....+..|...+.++.|+|++..+++++.|+.+++||+++++....+. .+...+..++++|++++|++++.|+.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTV  167 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc-cCCCcceeeecccCCCEEEEEeCCCeE
Confidence            8888888888899999999999999999999999999999999887766653 455678899999999999999999999


Q ss_pred             EEEeCCCCcEEEEEeccCCceeEEEeE-----------------EEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC
Q 020798          225 RLWNYSTGKILKTYTGHTNSKYCISST-----------------FSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT  287 (321)
Q Consensus       225 ~i~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~  287 (321)
                      ++|++.+++.+..+..+.....++...                 .....+.++++++.|+.|++||+++++.+..+.+|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  247 (317)
T d1vyhc1         168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  247 (317)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC
Confidence            999999999988888776654443321                 111245689999999999999999999999999999


Q ss_pred             CCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          288 DPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       288 ~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .+|.+++|+|++++|++|+  .||.|++||++.
T Consensus       248 ~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~  278 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCA--DDKTLRVWDYKN  278 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEE--TTTEEEEECCTT
T ss_pred             CCEEEEEECCCCCEEEEEE--CCCeEEEEECCC
Confidence            9999999999999999998  458999999864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-37  Score=256.35  Aligned_cols=280  Identities=26%  Similarity=0.468  Sum_probs=206.3

Q ss_pred             eeeccCCcccE-EEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC
Q 020798           16 TQTLNGHLRAI-SSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        16 ~~~~~~h~~~v-~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      +.+|+||...| +|++|  ++++|++|+.|+.|++||+..        ...+..+.+|.+.|.+++|+|+ .+|++|+.|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~--------~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D   73 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN--------KKFLLQLSGHDGGVWALKYAHG-GILVSGSTD   73 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTT--------TEEEEEEECCSSCEEEEEEETT-TEEEEEETT
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCC--------CcEEEEEECCCCCEEEEEEcCC-CEEEEEecc
Confidence            45689998875 56554  688999999999999998753        3457788999999999999985 579999999


Q ss_pred             CcEEEEecCCcceeeeeecC--cccEEEEEECCCCCEEEEeeCCCcEEEEe-----------------------------
Q 020798           95 KTIRLWDVPTATCLKTLIGH--TNYVFCVNFNPQSNMIVSGAFDETVRIWD-----------------------------  143 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~wd-----------------------------  143 (321)
                      +.|++|++...+........  ........+.+++..+++++.|+.|++||                             
T Consensus        74 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d1nexb2          74 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  153 (355)
T ss_dssp             CCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTE
T ss_pred             cccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccce
Confidence            99999999876644332211  12223333444444455555555555554                             


Q ss_pred             ----------------------------------cCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 020798          144 ----------------------------------VKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTG  189 (321)
Q Consensus       144 ----------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  189 (321)
                                                        +++++.+.....+...+.++.++|++..+++++.|+.+++||.+++
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  233 (355)
T d1nexb2         154 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  233 (355)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC
T ss_pred             eeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc
Confidence                                              4444444455556677888999999999999999999999999998


Q ss_pred             ceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeE
Q 020798          190 HCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCV  269 (321)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  269 (321)
                      ..+..+. .+...+..++++  +++|++++.|+.|++||+++.......  |......+  .+..+++.++++| .||.|
T Consensus       234 ~~~~~~~-~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~--~~~~~~~~~l~~g-~d~~i  305 (355)
T d1nexb2         234 ELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAI--TTFYVSDNILVSG-SENQF  305 (355)
T ss_dssp             CEEEEEC-CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE--ECTTCCCC--CEEEECSSEEEEE-ETTEE
T ss_pred             ccccccc-cccccccccccc--cceeeeeecccccccccccccceeccc--ccCCceEE--EEEcCCCCEEEEE-eCCEE
Confidence            8776654 456678888876  468999999999999999987655443  33333332  2334567777665 58999


Q ss_pred             EEEEcccceEEE-EecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          270 YLWELQSRKVVQ-KLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       270 ~vwd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ++||+++++++. .+.+|.++|++++|+|+ .++++++.  ||.++||.
T Consensus       306 ~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~--dg~~~l~~  351 (355)
T d1nexb2         306 NIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEK--DGQSFLEI  351 (355)
T ss_dssp             EEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEES--SSCEEEEE
T ss_pred             EEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEEC--CCcEEEEE
Confidence            999999998875 46789999999999987 46777774  46766654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-37  Score=260.58  Aligned_cols=239  Identities=17%  Similarity=0.230  Sum_probs=199.6

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc--eeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEE-
Q 020798           74 QGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT--CLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCL-  150 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-  150 (321)
                      .+|++++|+|++++|++|+.|+.|++||..+++  ....+.+|...|.+++|+|++++|++++.|+.|++||+.++... 
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence            569999999999999999999999999997764  56677899999999999999999999999999999999877644 


Q ss_pred             -EEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCce---eeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 020798          151 -KVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHC---MKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL  226 (321)
Q Consensus       151 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i  226 (321)
                       ..+..|...|++++|+|+++.|++++.|+++++|++.....   .......+...+.+++|+|++++|++++.|+.+++
T Consensus        88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v  167 (371)
T d1k8kc_          88 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI  167 (371)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEE
Confidence             34457788999999999999999999999999998765432   22334455677999999999999999999999999


Q ss_pred             EeCCCC------------------cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCC
Q 020798          227 WNYSTG------------------KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD  288 (321)
Q Consensus       227 ~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~  288 (321)
                      ||....                  ..+.....|......+   ...+++++|++++.|+.|++||+.+++.+..+..|..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV---CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE---EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EeeccCccccccccccccccccceeeeeeccCccCcEEEE---EeecccccccccccCCcceEEeeecccceeeeecccc
Confidence            997542                  2344444555444333   3347899999999999999999999999999999999


Q ss_pred             CeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          289 PVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       289 ~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      +|.+++|+|++.+|++|+   |+.+++|..
T Consensus       245 ~v~s~~fs~d~~~la~g~---d~~~~~~~~  271 (371)
T d1k8kc_         245 PLLAVTFITESSLVAAGH---DCFPVLFTY  271 (371)
T ss_dssp             CEEEEEEEETTEEEEEET---TSSCEEEEE
T ss_pred             cceeeeecCCCCEEEEEc---CCceEEEEe
Confidence            999999999999998875   356666654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-37  Score=247.23  Aligned_cols=274  Identities=19%  Similarity=0.259  Sum_probs=215.7

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      .++.+.|+||.++|++++|+|    |++|+.||.|++|++..             ...+|...|.++.+++++ .+++++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~-------------~~~~h~~~V~~~~~~~~~-~~~s~s   64 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-------------MHQDHSNLIVSLDNSKAQ-EYSSIS   64 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE-------------EECCCCSCEEEEECCSTT-CCEEEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC-------------CCCCCCCCEEEEEecCCC-eEEEEe
Confidence            467889999999999999998    99999999999997643             234788999999998765 578999


Q ss_pred             CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      .|+++++|++...+       ....+..+.+++++..++++ .++.+.+|+..+++....+..+. +  ..++++++..+
T Consensus        65 ~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~  133 (287)
T d1pgua2          65 WDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNS-P--GSAVSLSQNYV  133 (287)
T ss_dssp             TTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSS-C--EEEEEECSSEE
T ss_pred             eccccccccccccc-------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccccc-e--eeeeeccCcce
Confidence            99999999975432       23346678888887666654 55678899998888877776433 3  34567778888


Q ss_pred             EEEeCCC-eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEE-EeccCCceeEEEe
Q 020798          173 VTSSYDG-LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKT-YTGHTNSKYCISS  250 (321)
Q Consensus       173 ~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~  250 (321)
                      ++++.++ .+++|++............+...+..++|+|++++|++++.|+.|++||+.+++.+.. +..|...+.++..
T Consensus       134 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~  213 (287)
T d1pgua2         134 AVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISW  213 (287)
T ss_dssp             EEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEE
T ss_pred             eeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeee
Confidence            8877765 7999999876655555555667799999999999999999999999999998876543 4566666555432


Q ss_pred             E-------EEecCCeEEEEeCCCCeEEEEEccc-ceEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccc
Q 020798          251 T-------FSVTNGKYIVSGSEDSCVYLWELQS-RKVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       251 ~-------~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~  318 (321)
                      .       ....++.+|++|+.|++|++||+++ .+.+..+.+|.++|++++|+|++ .|+++|.  |+.|++|++
T Consensus       214 ~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~--D~~v~iW~i  286 (287)
T d1pgua2         214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA--DACIKRWNV  286 (287)
T ss_dssp             CCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEET--TSCEEEEEE
T ss_pred             cccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEEC--CCeEEEEEE
Confidence            1       1124578999999999999999976 55677788999999999999987 5777774  589999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-36  Score=249.40  Aligned_cols=258  Identities=20%  Similarity=0.262  Sum_probs=200.7

Q ss_pred             eeeccCC-cccEEEEEECC--CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe
Q 020798           16 TQTLNGH-LRAISSVKFSH--DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS   92 (321)
Q Consensus        16 ~~~~~~h-~~~v~~~~~s~--~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~   92 (321)
                      ...+.+| ...|++++|+|  +|++|++|+.||.|++|++................+..|..+|.+++|++++++|++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            4456677 46899999998  57899999999999999986533211111111223456888999999999999988775


Q ss_pred             C--CCcEEEEecCCcceeeeeecCcccEEEEEECCCCCE-EEEeeCCCcEEEEecCCCEEEEEE---eCCCCCeeEEEEc
Q 020798           93 D--DKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGKCLKVL---PAHSDPVTAVDFN  166 (321)
Q Consensus        93 ~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~~  166 (321)
                      .  ++.+.+|+.++++++..+.+|...+.+++|+|++.. +++++.|+.+++||....+....+   ..|...|.+++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~  214 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS  214 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred             ccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeec
Confidence            4  668999999999999999999999999999998865 678999999999999887765554   3566789999999


Q ss_pred             cC-CCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEc---cCCCEEEEEecCCeEEEEeCCCCcEEEEEeccC
Q 020798          167 RD-GTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFS---PNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT  242 (321)
Q Consensus       167 ~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  242 (321)
                      |+ +.++++++.|+.|++||+++++.+..+.. +...+..+.|+   |+|++|++++.|+.|+|||+++++++..+..+.
T Consensus       215 pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIED-DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             STTCCEEEEEETTCCEEEEETTTCCEEEECCB-TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             cccceeccccccccceeeeeeccccccccccc-cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC
Confidence            97 57899999999999999999887776543 33333333333   689999999999999999999999999887765


Q ss_pred             CceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          243 NSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      .........+....+.+|++++.||.|++||+
T Consensus       294 ~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         294 QQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            54332222222233457889999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-36  Score=251.10  Aligned_cols=248  Identities=27%  Similarity=0.445  Sum_probs=204.7

Q ss_pred             cCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEE
Q 020798           20 NGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRL   99 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~i   99 (321)
                      .+|...|++++|+|+|++|++|+.|+.|++|+...        ...+..+.+|...|.++.+++++..+++++.++.+++
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~  189 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN--------RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI  189 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT--------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cCCCCCEEEEEECCCCCcceecccccccccccccc--------cccccccccccccccccccccccccccccccceeeee
Confidence            46788899999999999999999999999998643        2345567789999999999999999999999999999


Q ss_pred             EecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE-------eCCCCCeeEEEEccCCCEE
Q 020798          100 WDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL-------PAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus       100 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l  172 (321)
                      ||..+.........+...+....+.+++++|++++.|+.|++||.+++.....+       ..|..+|.+++|+|+++.|
T Consensus       190 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  269 (388)
T d1erja_         190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV  269 (388)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred             eeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEE
Confidence            999988877766666655555545557899999999999999999988765544       3577899999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeee-----------eccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc
Q 020798          173 VTSSYDGLCRIWDASTGHCMKT-----------LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH  241 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  241 (321)
                      ++++.|+.+++||++++.....           ....+...+..++|+|++++|++|+.||.|++||+++++++..+.+|
T Consensus       270 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H  349 (388)
T d1erja_         270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  349 (388)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC
Confidence            9999999999999976543211           12234567899999999999999999999999999999999999999


Q ss_pred             CCceeEEEeEE---EecCCeEEEEeCCCCeEEEEEcc
Q 020798          242 TNSKYCISSTF---SVTNGKYIVSGSEDSCVYLWELQ  275 (321)
Q Consensus       242 ~~~~~~~~~~~---~~~~~~~l~~~~~dg~i~vwd~~  275 (321)
                      ...+.++....   ..+++.+|++|+.||+|+||+++
T Consensus       350 ~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            88876654321   24689999999999999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-35  Score=234.84  Aligned_cols=274  Identities=28%  Similarity=0.509  Sum_probs=217.4

Q ss_pred             eeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC
Q 020798           16 TQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK   95 (321)
Q Consensus        16 ~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~   95 (321)
                      .+.+.+|..+|+|++|  ||++||+|+.||.|++|++..        ..++..+.+|...|.+++|  ++++|++|+.|+
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~--------~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~   75 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT--------LECKRILTGHTGSVLCLQY--DERVIITGSSDS   75 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS--------CCEEEEECCCSSCEEEEEC--CSSEEEEEETTS
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCC--------CcEEEEEecCCCCEeeeec--ccceeecccccc
Confidence            3445789999998764  799999999999999998753        3456788899999999987  578999999999


Q ss_pred             cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCE---EEEEEeCCCCCeeEEEEccCCCEE
Q 020798           96 TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGK---CLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      .|++|++..+........+....  ....+....++++..++.+++|+.....   ....+..|...+..+.+.+  ..+
T Consensus        76 ~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~  151 (293)
T d1p22a2          76 TVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYI  151 (293)
T ss_dssp             CEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEE
T ss_pred             ccccccccccccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceecc--ccc
Confidence            99999999887666555444333  3344556789999999999999987654   3444567778887777654  568


Q ss_pred             EEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEE
Q 020798          173 VTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTF  252 (321)
Q Consensus       173 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  252 (321)
                      ++++.|+.+++||.++++.+..+. .+...+..+.+  ++.++++++.|+.|++||+++.+.+..+..+......     
T Consensus       152 ~~~s~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-----  223 (293)
T d1p22a2         152 VSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC-----  223 (293)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE-----
T ss_pred             ccccCCCceeeecCCCCcEEEEEc-ccccccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeee-----
Confidence            899999999999999988776654 33444555544  5678999999999999999999999988877665332     


Q ss_pred             EecCCeEEEEeCCCCeEEEEEcccc---------eEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEcc
Q 020798          253 SVTNGKYIVSGSEDSCVYLWELQSR---------KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWT  317 (321)
Q Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~  317 (321)
                      ...++.+|++|+.||.|++||+...         ..+..+.+|.++|++++|+  +.+|++||.  |++|+|||
T Consensus       224 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~--Dg~i~iWD  293 (293)
T d1p22a2         224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSH--DDTILIWD  293 (293)
T ss_dssp             EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCS--SSEEEEEC
T ss_pred             ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEec--CCEEEEeC
Confidence            2357889999999999999998542         3577889999999999995  568999984  58999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-34  Score=235.31  Aligned_cols=243  Identities=19%  Similarity=0.279  Sum_probs=193.5

Q ss_pred             ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeee-ecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTL-IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      .+.+.||...|.+++|+|++++|++|+.||.|++||+.++++...+ .+|...|.+++|+|++. +++++.|+.+++|+.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEecc
Confidence            4567899999999999999999999999999999999998877766 46899999999999986 556677999999997


Q ss_pred             CCCEE---EEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC
Q 020798          145 KTGKC---LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD  221 (321)
Q Consensus       145 ~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d  221 (321)
                      .....   ......+...+..++|+|+++.+++++ ++.+++|+....  ....   ....+..++++|+++++++++.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~--~~~~---~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL--TEVP---ISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE--EEEE---CSSCEEEEEECTTSCEEEEEETT
T ss_pred             CCccccccccccccccccccccccccccccccccc-cccccccccccc--cccc---ccccccccccccccccccccccc
Confidence            64321   112234667889999999998766554 568999985432  2211   23456789999999999999999


Q ss_pred             CeEEEEeCCCCcEEEE-EeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEE---EEecCCCCCeEEEEecC
Q 020798          222 NTLRLWNYSTGKILKT-YTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV---QKLEGHTDPVISVASHP  297 (321)
Q Consensus       222 ~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~h~~~v~~~~~~p  297 (321)
                      +.|++||+++++.... ...|...+.+   ....+++.+|++++.|+.|++||+.++..+   ..+.+|..+|++++|+|
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPAEITS---VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEE---EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred             ccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999988765443 3345554443   334578999999999999999999877554   34567899999999999


Q ss_pred             CCceEEEEeecCCccEEEccccc
Q 020798          298 TENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       298 ~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ++++|++|+.  |+.|++||++.
T Consensus       235 ~~~~l~sgs~--dg~i~iwd~~~  255 (299)
T d1nr0a2         235 DNVRLATGSL--DNSVIVWNMNK  255 (299)
T ss_dssp             TSSEEEEEET--TSCEEEEETTC
T ss_pred             cccceEEEcC--CCEEEEEECCC
Confidence            9999999984  58999999864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-34  Score=241.87  Aligned_cols=282  Identities=17%  Similarity=0.250  Sum_probs=202.5

Q ss_pred             eeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEE------ECC-CCCEE
Q 020798           16 TQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLV------FSS-DSRFL   88 (321)
Q Consensus        16 ~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~------~~~-~~~~l   88 (321)
                      ....++|...|.++++++  ++++++|.|+.|++|+.......  .+.........|..++..+.      .+. ++.++
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE--NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC--CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCC--cccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence            345689999999999875  68999999999999987543321  11111122233444433322      222 23467


Q ss_pred             EEEeCCCcEEEEecCCcceeeee----------ecCcccEEEEEECCC-----CCEEEEeeCCCcEEEEecCCCE-----
Q 020798           89 VSASDDKTIRLWDVPTATCLKTL----------IGHTNYVFCVNFNPQ-----SNMIVSGAFDETVRIWDVKTGK-----  148 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~wd~~~~~-----  148 (321)
                      ++++.||.|++|++.........          ..+...+..+++.++     +.++++++.||.+++|++....     
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            89999999999997543221111          123445667777664     3678999999999999974210     


Q ss_pred             ----------E---EEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec-----cCCCCCeEEEEEcc
Q 020798          149 ----------C---LKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI-----DDENPPVSFVKFSP  210 (321)
Q Consensus       149 ----------~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~  210 (321)
                                .   ......+...+.+++|+|++ +|++|+.|++|++||+.+++.+..+.     ..+..+|.+++|+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                      0   11112345568899999987 88999999999999999887655432     34567899999999


Q ss_pred             CCCEEEEEecCC---eEEEEeCCCCcEEEEEe-------------ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          211 NGKFILVGTLDN---TLRLWNYSTGKILKTYT-------------GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       211 ~g~~l~~~~~d~---~i~i~d~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      +|++|++|+.|+   .|++||+.+++.+..+.             +|...+.++   .+.+++++|++|+.|++|++||+
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l---~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL---SFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE---EECSSSSEEEEEETTSEEEEEET
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeee---ccCCCCCeeEEECCCCEEEEEEC
Confidence            999999999887   49999999998888774             465554443   34578999999999999999999


Q ss_pred             ccceEEEEecCCCCCeE----EEEecCCCceEEEE
Q 020798          275 QSRKVVQKLEGHTDPVI----SVASHPTENIIASG  305 (321)
Q Consensus       275 ~~~~~~~~~~~h~~~v~----~~~~~p~~~~l~s~  305 (321)
                      ++++++..+++|.++|.    .++|+|++..++++
T Consensus       319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             CCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            99999999999987664    36677766655543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.5e-35  Score=239.40  Aligned_cols=297  Identities=13%  Similarity=0.131  Sum_probs=212.2

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-CCEEEEEe
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-SRFLVSAS   92 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~   92 (321)
                      ++.+.+++|.+.|++++|+|++++||+|+.|+.|++|++....     ....+....+|...|.+++|+|+ +.+|++|+
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~-----~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~   76 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCC-----cceEEEEecCCCCCEEEEEEeCCCCCEEEEcc
Confidence            4677889999999999999999999999999999999986421     11122334479999999999986 45889999


Q ss_pred             CCCcEEEEecCCcceeeeeecCcc-cEEEEEECCCCCEEEEeeCCCcEEEEecCCCEE----EEEEeCC--CCCeeEEEE
Q 020798           93 DDKTIRLWDVPTATCLKTLIGHTN-YVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKC----LKVLPAH--SDPVTAVDF  165 (321)
Q Consensus        93 ~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~--~~~v~~~~~  165 (321)
                      .|+.|++|++...........+.. ......+.++...+++++.++.+++||++.+..    ......+  ........+
T Consensus        77 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
T d1yfqa_          77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred             cccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeee
Confidence            999999999988766555544433 334555667788999999999999999864322    2222222  223455677


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCCCceeeee--ccCCCCCeEEEE-EccCCCEEEEEecCCeEEEEeCCCCcE------EE
Q 020798          166 NRDGTMIVTSSYDGLCRIWDASTGHCMKTL--IDDENPPVSFVK-FSPNGKFILVGTLDNTLRLWNYSTGKI------LK  236 (321)
Q Consensus       166 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~-~~~~g~~l~~~~~d~~i~i~d~~~~~~------~~  236 (321)
                      .+.+..+++++.|+.+++||++........  ............ +..++..+++++.||.+.+|+......      ..
T Consensus       157 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~  236 (342)
T d1yfqa_         157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc
Confidence            788889999999999999999765432221  122223344444 445778899999999999998754321      11


Q ss_pred             EEe------ccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCC
Q 020798          237 TYT------GHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDND  310 (321)
Q Consensus       237 ~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~  310 (321)
                      .+.      .+......+....+.|++.+|++|+.||.|++||+++++.+..+..+ .++..++|+|++++|++|+.|  
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sd--  313 (342)
T d1yfqa_         237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSD--  313 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEEC--
T ss_pred             eeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcC--
Confidence            111      11222233444455688999999999999999999999988887643 345567788899999998854  


Q ss_pred             ccEEEccc
Q 020798          311 RTVKIWTQ  318 (321)
Q Consensus       311 ~~i~iw~~  318 (321)
                      +.+++|..
T Consensus       314 d~~~~~~~  321 (342)
T d1yfqa_         314 DTFKTNAA  321 (342)
T ss_dssp             THHHHCSS
T ss_pred             CcEEEeee
Confidence            45555543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.1e-33  Score=229.01  Aligned_cols=262  Identities=25%  Similarity=0.447  Sum_probs=218.9

Q ss_pred             ccccccCC--cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEE
Q 020798            4 DQSLESFR--PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVF   81 (321)
Q Consensus         4 ~~~~~~~~--~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~   81 (321)
                      |..+..|+  .....+.+.+|...|.+++|+|+++++++|+.|+.+.+|+.....    ........+.+|.........
T Consensus        76 Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  151 (340)
T d1tbga_          76 DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE----GNVRVSRELAGHTGYLSCCRF  151 (340)
T ss_dssp             TTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSC----SCCCEEEEECCCSSCEEEEEE
T ss_pred             CCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccc----cccccceeccccccccccccc
Confidence            44555444  344667788999999999999999999999999999999875432    122334456677766665555


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCee
Q 020798           82 SSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVT  161 (321)
Q Consensus        82 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~  161 (321)
                      .. +..+.....+.....+.............+...+....+.+.+..+++++.|+.|++||+++++++..+..|..+|+
T Consensus       152 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~  230 (340)
T d1tbga_         152 LD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN  230 (340)
T ss_dssp             EE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE
T ss_pred             cc-ccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeE
Confidence            44 45677788899999999888777777777888899999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec-cCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec
Q 020798          162 AVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI-DDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG  240 (321)
Q Consensus       162 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~  240 (321)
                      +++|+|++..|++++.|+.+++||++......... ..+...+..++|+|++++|++|+.||.|++||+.+++.+..+.+
T Consensus       231 ~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  310 (340)
T d1tbga_         231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC
Confidence            99999999999999999999999999877665542 33455689999999999999999999999999999999999999


Q ss_pred             cCCceeEEEeEEEecCCeEEEEeCCCCeEEEEE
Q 020798          241 HTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd  273 (321)
                      |...+.++.   ..+++.+|++|+.||.|+|||
T Consensus       311 H~~~V~~l~---~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         311 HDNRVSCLG---VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSSCEEEEE---ECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEE---EeCCCCEEEEEccCCEEEEeC
Confidence            988765543   347899999999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=3.8e-33  Score=232.32  Aligned_cols=273  Identities=13%  Similarity=0.125  Sum_probs=206.5

Q ss_pred             EEEECC-CCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCC--cEEEEecCC
Q 020798           28 SVKFSH-DGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDK--TIRLWDVPT  104 (321)
Q Consensus        28 ~~~~s~-~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~  104 (321)
                      ...||| ||+++|+++ ++.+.+|++.+.         ....+ +|...|.+++|+|||++|++++.+.  .|++||..+
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~---------~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~   75 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGT---------YVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT   75 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSS---------BEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCC---------cEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC
Confidence            467999 999999987 578999977532         12222 6889999999999999998776553  799999988


Q ss_pred             cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEe--------
Q 020798          105 ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS--------  176 (321)
Q Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------  176 (321)
                      ++. ..+..|...+.+++|+|++++|++++.++.+++|++.+++....+..|...+.+++|+|+++.|+.+.        
T Consensus        76 ~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~  154 (360)
T d1k32a3          76 GKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD  154 (360)
T ss_dssp             CCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred             CcE-EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeecccccccee
Confidence            764 56778999999999999999999999999999999999998888888999999999999999988653        


Q ss_pred             --CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcE-------EEEEeccCCc---
Q 020798          177 --YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKI-------LKTYTGHTNS---  244 (321)
Q Consensus       177 --~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~---  244 (321)
                        .++.+++||..+++.....  .+...+..+.|+|+|++|++++.++.+.+||......       ......+...   
T Consensus       155 ~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (360)
T d1k32a3         155 GYVMQAIHVYDMEGRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP  232 (360)
T ss_dssp             SCCEEEEEEEETTTTEEEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred             eccccceeeeccccCceeeec--ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCcccc
Confidence              3446899999887654332  3445677889999999999999999999998654321       1111111000   


Q ss_pred             -----------------------ee-------EEEeEEEecC-------------CeEEEEeCCCCeEEEEEcccceEEE
Q 020798          245 -----------------------KY-------CISSTFSVTN-------------GKYIVSGSEDSCVYLWELQSRKVVQ  281 (321)
Q Consensus       245 -----------------------~~-------~~~~~~~~~~-------------~~~l~~~~~dg~i~vwd~~~~~~~~  281 (321)
                                             ..       ........++             +.++++++.++.|++||+.+++.. 
T Consensus       233 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-  311 (360)
T d1k32a3         233 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-  311 (360)
T ss_dssp             GGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-
T ss_pred             ceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-
Confidence                                   00       0000111111             123455667889999999887643 


Q ss_pred             EecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          282 KLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       282 ~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                         .|.+.|.+++|+|||++|++++  .||.|++|+.++
T Consensus       312 ---~~~~~v~~~~~SpDG~~l~~~~--~Dg~i~v~d~~~  345 (360)
T d1k32a3         312 ---EVKNNLTDLRLSADRKTVMVRK--DDGKIYTFPLEK  345 (360)
T ss_dssp             ---EEEEEEEEEEECTTSCEEEEEE--TTSCEEEEESSC
T ss_pred             ---EecCCcCEEEECCCCCEEEEEE--CCCeEEEEECCC
Confidence               3455799999999999999998  458999999875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-32  Score=223.36  Aligned_cols=245  Identities=28%  Similarity=0.504  Sum_probs=194.7

Q ss_pred             ccccccccccE-EEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           66 LQKFTGHEQGV-SDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        66 ~~~~~~h~~~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      ...+++|...| +|+++  ++++|++|+.||+|++||+.+++++..+.+|...|.+++|+|+ ++|++++.|+.|++|+.
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            45688998886 55555  6789999999999999999999999999999999999999985 68999999999999999


Q ss_pred             CCCEEEEEEeCCCCC--eeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC----------C-C---------CC
Q 020798          145 KTGKCLKVLPAHSDP--VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD----------E-N---------PP  202 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----------~-~---------~~  202 (321)
                      ...+...........  .....+.+++..+++++.|+.+++||+++..........          . .         ..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence            988877665444333  445667788889999999999999999765432221100          0 0         01


Q ss_pred             eEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEE
Q 020798          203 VSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK  282 (321)
Q Consensus       203 ~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  282 (321)
                      .....+.+++++++++..|+.+++||+.+++.+....++......   ....+++.++++++.|+.|++||++++..+..
T Consensus       162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  238 (355)
T d1nexb2         162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS---TIYDHERKRCISASMDTTIRIWDLENGELMYT  238 (355)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE---EEEETTTTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ccccccccccceeeeecccceeeeeecccccceeeeecccccccc---ccccccceeeecccccceEEeeeccccccccc
Confidence            112345678899999999999999999999988888776555433   33347888999999999999999999999999


Q ss_pred             ecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          283 LEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       283 ~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      +.+|..+|.++++++  ++|++|+  .||.|++||.+.
T Consensus       239 ~~~h~~~v~~~~~~~--~~l~~~~--~dg~i~iwd~~~  272 (355)
T d1nexb2         239 LQGHTALVGLLRLSD--KFLVSAA--ADGSIRGWDAND  272 (355)
T ss_dssp             ECCCSSCCCEEEECS--SEEEEEC--TTSEEEEEETTT
T ss_pred             ccccccccccccccc--ceeeeee--cccccccccccc
Confidence            999999999999974  6899998  458999999864

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-31  Score=216.69  Aligned_cols=242  Identities=30%  Similarity=0.639  Sum_probs=186.2

Q ss_pred             CcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEe
Q 020798           64 SPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWD  143 (321)
Q Consensus        64 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  143 (321)
                      .+...+++|.+.|.+ +++++|++|++|+.||+|++||+.+++++..+.+|...|.+++++|  ++|++++.|+.+++|+
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWN   83 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceecccccccc
Confidence            456678999999865 3666889999999999999999999999999999999999999987  4899999999999999


Q ss_pred             cCCCEEEEEEeCCCCCee--------------------------------------EEEEccCCCEEEEEeCCCeEEEEe
Q 020798          144 VKTGKCLKVLPAHSDPVT--------------------------------------AVDFNRDGTMIVTSSYDGLCRIWD  185 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~v~--------------------------------------~~~~~~~~~~l~~~~~dg~i~~~d  185 (321)
                      ............+...+.                                      ...+.+....+++++.++.+++||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEee
Confidence            876554333222221111                                      112233445677788888888888


Q ss_pred             CCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCC
Q 020798          186 ASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSE  265 (321)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  265 (321)
                      .+.......+.. +..  ....+.+++.++++++.|+.|++||++.++.+..+..|.....++.     .++++|++|+.
T Consensus       164 ~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~s~s~  235 (342)
T d2ovrb2         164 PETETCLHTLQG-HTN--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME-----LKDNILVSGNA  235 (342)
T ss_dssp             GGGTEEEEEECC-CSS--CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE-----EETTEEEEEET
T ss_pred             cccceeeEEEcC-ccc--ccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEe-----cCCCEEEEEcC
Confidence            877666555432 222  3445667889999999999999999999999999988876654432     24679999999


Q ss_pred             CCeEEEEEcccceEEEEecC---CCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          266 DSCVYLWELQSRKVVQKLEG---HTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       266 dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ||.|++||+...+....+..   |...+.++.++  ++++++|+  .||.|++||++.
T Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s--~Dg~i~iwd~~t  289 (342)
T d2ovrb2         236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS--DDGTVKLWDLKT  289 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE--TTSEEEEEETTT
T ss_pred             CCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEc--CCCEEEEEECCC
Confidence            99999999998887776665   45667777765  56999998  458999999863

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.4e-29  Score=202.59  Aligned_cols=237  Identities=31%  Similarity=0.618  Sum_probs=189.7

Q ss_pred             ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecC
Q 020798           66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVK  145 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  145 (321)
                      +.....|..+|.|++|  ++++|++|+.||+|++||+.+++++..+.+|...|.+++|  ++++|++|+.|+.|++|++.
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            3445678889998765  7899999999999999999999999999999999998876  56899999999999999999


Q ss_pred             CCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceee--eeccCCCCCeEEEEEccCCCEEEEEecCCe
Q 020798          146 TGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMK--TLIDDENPPVSFVKFSPNGKFILVGTLDNT  223 (321)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~  223 (321)
                      .+........+...  ...+.+....++++..++.+.+||........  .....+...+....+  ....+++++.|+.
T Consensus        84 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~  159 (293)
T d1p22a2          84 TGEMLNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT  159 (293)
T ss_dssp             SCCEEEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred             cccccccccccccc--cccccccccceeecccccceeEeecccccccccccccccccccccccee--cccccccccCCCc
Confidence            88776666544433  34455566789999999999999987654322  223344455655554  4557888999999


Q ss_pred             EEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEE
Q 020798          224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIA  303 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  303 (321)
                      +++||+++++.+..+.++......+.     .++.++++++.||.|++||+++.+.+....+|...+..+  .+++.+|+
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~  232 (293)
T d1p22a2         160 IKVWNTSTCEFVRTLNGHKRGIACLQ-----YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIV  232 (293)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEE-----EETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--ECCSSEEE
T ss_pred             eeeecCCCCcEEEEEccccccccccc-----CCCCeEEEecCCCEEEEEecccceeeeeecccceeeeec--cccceEEE
Confidence            99999999999999887766543322     246789999999999999999999999999998888765  45778999


Q ss_pred             EEeecCCccEEEcccc
Q 020798          304 SGALDNDRTVKIWTQE  319 (321)
Q Consensus       304 s~~~d~~~~i~iw~~~  319 (321)
                      +|+.  ||.|++||++
T Consensus       233 sg~~--dg~i~iwd~~  246 (293)
T d1p22a2         233 SGAY--DGKIKVWDLV  246 (293)
T ss_dssp             EEET--TSCEEEEEHH
T ss_pred             EEcC--CCEEEEEECC
Confidence            9984  5899999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=6.3e-31  Score=216.28  Aligned_cols=251  Identities=13%  Similarity=0.153  Sum_probs=185.8

Q ss_pred             ccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcce---eeeeecCcccEEEEEECCCC-CEEEEeeCCCcEEE
Q 020798           66 LQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC---LKTLIGHTNYVFCVNFNPQS-NMIVSGAFDETVRI  141 (321)
Q Consensus        66 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~  141 (321)
                      ++...+|++.|++|+|+|++++|++|+.||+|++||+.....   .....+|...|.+++|+|++ .+|++|+.|+.|++
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            445678999999999999999999999999999999876543   23334799999999999875 57899999999999


Q ss_pred             EecCCCEEEEEEeCCCCC-eeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec---c--CCCCCeEEEEEccCCCEE
Q 020798          142 WDVKTGKCLKVLPAHSDP-VTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI---D--DENPPVSFVKFSPNGKFI  215 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~--~~~~~~~~~~~~~~g~~l  215 (321)
                      |++..+........+... .....+.++...+++++.++.+++||++.+.......   .  ..........+.+.+..+
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence            999887666555444443 3445566778899999999999999986543222111   1  112233456778889999


Q ss_pred             EEEecCCeEEEEeCCCCcEEEE---EeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceE---------EE--
Q 020798          216 LVGTLDNTLRLWNYSTGKILKT---YTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKV---------VQ--  281 (321)
Q Consensus       216 ~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---------~~--  281 (321)
                      ++++.|+.|++||+...+....   .......  .......+.++..+++++.||.+.+|++.....         ..  
T Consensus       164 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ--IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEESTTEEEEEESSCCTTCCCEEEECSCSSC--EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             eeecCCCcEEEEecccCcccceeeeecccccc--eeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            9999999999999976653322   2222222  222334456788899999999999999754321         11  


Q ss_pred             ----EecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          282 ----KLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       282 ----~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                          ...+|..+|++++|+|++++||+|+.  ||.|++||.+.
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~--Dg~v~vWD~~~  282 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGS--DGIISCWNLQT  282 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEET--TSCEEEEETTT
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECC--CCEEEEEECCC
Confidence                12346678999999999999999994  58999999864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-29  Score=214.24  Aligned_cols=244  Identities=16%  Similarity=0.260  Sum_probs=174.9

Q ss_pred             cccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcce------eeeeecCcccEEE------EEECC-CCCEEEEeeC
Q 020798           69 FTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC------LKTLIGHTNYVFC------VNFNP-QSNMIVSGAF  135 (321)
Q Consensus        69 ~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~------~~~~~-~~~~l~~~~~  135 (321)
                      .++|...|.++++++  +++++++.|++|++||..+...      ......|...+..      +..++ +...+++++.
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            468999999999864  6899999999999999755421      1122233333222      22222 2346778999


Q ss_pred             CCcEEEEecCCCEEE-----EEE-----eCCCCCeeEEEEccC-----CCEEEEEeCCCeEEEEeCCCCce---------
Q 020798          136 DETVRIWDVKTGKCL-----KVL-----PAHSDPVTAVDFNRD-----GTMIVTSSYDGLCRIWDASTGHC---------  191 (321)
Q Consensus       136 dg~i~~wd~~~~~~~-----~~~-----~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~~d~~~~~~---------  191 (321)
                      ||.|++|++......     ...     ..+...+..++|.++     +..+++++.||.+++|++.....         
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            999999997543211     111     123345677888765     35788999999999999742110         


Q ss_pred             -----ee-e--eccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEe------ccCCceeEEEeEEEecCC
Q 020798          192 -----MK-T--LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT------GHTNSKYCISSTFSVTNG  257 (321)
Q Consensus       192 -----~~-~--~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  257 (321)
                           .. .  ........+.+++|+|++ +|++|+.|+.|++||+.+++.+..+.      +|...+.++   .+.|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l---~~spdg  243 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV---KFSPQG  243 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE---EECSST
T ss_pred             ccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc---cccccc
Confidence                 00 0  111223447789999998 88999999999999999998877654      344444443   345899


Q ss_pred             eEEEEeCCCC---eEEEEEcccceEEEEe-------------cCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          258 KYIVSGSEDS---CVYLWELQSRKVVQKL-------------EGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       258 ~~l~~~~~dg---~i~vwd~~~~~~~~~~-------------~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ++|++|+.|+   .|++||+++++.+..+             .+|.+.|++++|+|++++|++||.  |++|+|||.+.
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~--D~~v~vWd~~~  320 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW--DGKLRFWDVKT  320 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET--TSEEEEEETTT
T ss_pred             ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC--CCEEEEEECCC
Confidence            9999999886   5999999988777665             379999999999999999999994  58999999875

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.9e-27  Score=188.92  Aligned_cols=245  Identities=15%  Similarity=0.201  Sum_probs=187.0

Q ss_pred             CccccccCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEEC
Q 020798            3 SDQSLESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFS   82 (321)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~   82 (321)
                      .|.++..|+..+   ...+|...|.++++++++ .+++++.|+.+++|++....               ....+..+.++
T Consensus        29 ~Dg~v~~Wd~~~---~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~---------------~~~~~~~~~~~   89 (287)
T d1pgua2          29 YDGRIMEWSSSS---MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE---------------FGSQPKVASAN   89 (287)
T ss_dssp             TTSCEEETTTTE---EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE---------------CSSCEEEEEEC
T ss_pred             CCCeEEEEECCC---CCCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc---------------cccceeeeeec
Confidence            455666666554   346899999999999765 57889999999999764321               12346778899


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCC-cEEEEecCCCEEEEEE-eCCCCCe
Q 020798           83 SDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE-TVRIWDVKTGKCLKVL-PAHSDPV  160 (321)
Q Consensus        83 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~-~~~~~~v  160 (321)
                      +++..++++ .++.+.+|+..+++....+..+. .+  .+++++++.+++++.++ .+++|++...+....+ ..|..++
T Consensus        90 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v  165 (287)
T d1pgua2          90 NDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNS-PG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP  165 (287)
T ss_dssp             SSSEEEEEE-TTSEEEEEETTTCCEEEEEECSS-CE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred             cCCceEEEe-ecccceeeeccceeeeeeccccc-ee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCce
Confidence            988776655 56678899998888777665433 33  35567777887777665 7999998766554444 3467889


Q ss_pred             eEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC----------CCEEEEEecCCeEEEEeCC
Q 020798          161 TAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN----------GKFILVGTLDNTLRLWNYS  230 (321)
Q Consensus       161 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~l~~~~~d~~i~i~d~~  230 (321)
                      ++++|+|++.+|++++.||.|++||+.+++........+...+..++|+|.          +.++++|+.|+.|++||++
T Consensus       166 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         166 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             eEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence            999999999999999999999999999887666555667778999999875          4689999999999999997


Q ss_pred             C-CcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          231 T-GKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      + .+.+..+.+|...+..+.  + .+++ .|++++.||.|++|++
T Consensus       246 ~~~~~~~~~~~h~~~V~~v~--~-~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         246 RPMKIIKALNAHKDGVNNLL--W-ETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CTTCCEEETTSSTTCEEEEE--E-EETT-EEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEeCCCCCCeEEEE--E-CCCC-EEEEEECCCeEEEEEE
Confidence            6 456666777877765543  3 3555 5888999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=5.8e-26  Score=188.48  Aligned_cols=253  Identities=14%  Similarity=0.121  Sum_probs=189.5

Q ss_pred             CCcccEEEEEECCCCCEEEEecCCc--eEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEE
Q 020798           21 GHLRAISSVKFSHDGRLLASSSADK--TLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIR   98 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~   98 (321)
                      +|...|.+++|+|||++|++++.+.  .+.+|+....         ....+..|...|.+++|+|++++|++++.++.++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~---------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~  110 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG---------KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIM  110 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC---------CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC---------cEEEeeCCCceEEeeeecccccccceeccccccc
Confidence            6999999999999999998776553  7889987542         2445678999999999999999999999999999


Q ss_pred             EEecCCcceeeeeecCcccEEEEEECCCCCEEEEee----------CCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC
Q 020798           99 LWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA----------FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD  168 (321)
Q Consensus        99 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  168 (321)
                      +|++.+++....+..|...+.+++|+|+|++|+.+.          .++.+++||+.+++.... ..+...+..++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spd  189 (360)
T d1k32a3         111 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDAD  189 (360)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTT
T ss_pred             cccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee-cccccccccccccCC
Confidence            999999998888888888999999999999988543          345689999998876543 456677889999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce-------eeeecc-----------------------------------CCCCCeEEE
Q 020798          169 GTMIVTSSYDGLCRIWDASTGHC-------MKTLID-----------------------------------DENPPVSFV  206 (321)
Q Consensus       169 ~~~l~~~~~dg~i~~~d~~~~~~-------~~~~~~-----------------------------------~~~~~~~~~  206 (321)
                      |+.|++++.++.+.+||......       ...+..                                   ........+
T Consensus       190 g~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (360)
T d1k32a3         190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI  269 (360)
T ss_dssp             SCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEE
T ss_pred             CCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEe
Confidence            99999999999999998643211       000000                                   000112223


Q ss_pred             EEccCCCE-------------EEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEE
Q 020798          207 KFSPNGKF-------------ILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWE  273 (321)
Q Consensus       207 ~~~~~g~~-------------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd  273 (321)
                      ...+++..             ++.++.++.|++||+.+++... +.+   .   +......+||++|++++.||.|++||
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~---~---v~~~~~SpDG~~l~~~~~Dg~i~v~d  342 (360)
T d1k32a3         270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VKN---N---LTDLRLSADRKTVMVRKDDGKIYTFP  342 (360)
T ss_dssp             EECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EEE---E---EEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             eecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE-ecC---C---cCEEEECCCCCEEEEEECCCeEEEEE
Confidence            33333222             2334457789999998876533 222   1   23334468999999999999999999


Q ss_pred             cccceEEEEecCCCCCe
Q 020798          274 LQSRKVVQKLEGHTDPV  290 (321)
Q Consensus       274 ~~~~~~~~~~~~h~~~v  290 (321)
                      +.+++....+..+..|+
T Consensus       343 ~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         343 LEKPEDERTVETDKRPL  359 (360)
T ss_dssp             SSCTTSCEECCCCSSCE
T ss_pred             CCCCCcceEEEeccccc
Confidence            99988777776666664

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=1.6e-25  Score=190.58  Aligned_cols=300  Identities=12%  Similarity=0.044  Sum_probs=201.9

Q ss_pred             cceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEE-EE
Q 020798           12 PYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL-VS   90 (321)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l-~~   90 (321)
                      ..++.+.+..| ..+..++|||||+++++++.|+.+.+||+.......   ...+....+|.+.+.+..|+|||++| ++
T Consensus        51 t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~---~~~i~~~~~~~~~~~s~~~SpDG~~l~vs  126 (432)
T d1qksa2          51 TYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT---VAEIKIGSEARSIETSKMEGWEDKYAIAG  126 (432)
T ss_dssp             TCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---EEEEECCSEEEEEEECCSTTCTTTEEEEE
T ss_pred             CCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE---EEEEecCCCCCCeEEecccCCCCCEEEEE
Confidence            44567777766 469999999999999999999999999986432100   01122234566667777889999986 67


Q ss_pred             EeCCCcEEEEecCCcceeeeeecC-----------cccEEEEEECCCCCEE-EEeeCCCcEEEEecCCCEEEEEEe-CCC
Q 020798           91 ASDDKTIRLWDVPTATCLKTLIGH-----------TNYVFCVNFNPQSNMI-VSGAFDETVRIWDVKTGKCLKVLP-AHS  157 (321)
Q Consensus        91 ~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~-~~~  157 (321)
                      +..++.|++||..+++++..+..+           ......+.++|++..+ ++...++.|.+||..+.+...... .+.
T Consensus       127 ~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g  206 (432)
T d1qksa2         127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE  206 (432)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC
T ss_pred             cCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc
Confidence            888999999999999877665433           3445678899998875 556678999999988766443222 345


Q ss_pred             CCeeEEEEccCCCEEEEEe-CCCeEEEEeCCCCceeeeeccC----CCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCC
Q 020798          158 DPVTAVDFNRDGTMIVTSS-YDGLCRIWDASTGHCMKTLIDD----ENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYST  231 (321)
Q Consensus       158 ~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~  231 (321)
                      .....++|+|+++++++++ .++.+.++|..+.+....+...    +........+...+....+.. .++.+.+|+...
T Consensus       207 ~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccc
Confidence            5678999999999877666 4668899999887665443221    112233334444444444332 366788887543


Q ss_pred             C-------cEEEEEeccCC----------ceeEE------------EeEEEecCCeEEEEeCCCCeEEEEEcccceEEEE
Q 020798          232 G-------KILKTYTGHTN----------SKYCI------------SSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQK  282 (321)
Q Consensus       232 ~-------~~~~~~~~~~~----------~~~~~------------~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  282 (321)
                      .       +....+..+..          .....            ...+ .+|++.+++++.|+.+++|++.++..   
T Consensus       287 ~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~-vpDg~~la~~s~d~~~k~w~~~~~~~---  362 (432)
T d1qksa2         287 EGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA-VFDIKAMTGDGSDPEFKTLPIAEWAG---  362 (432)
T ss_dssp             TTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE-EEEGGGCCCSSSCCCEEEECHHHHHT---
T ss_pred             ccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEE-EEechhhcccccCCceEecccccccc---
Confidence            2       23333322111          00000            0011 25788899999999999999866532   


Q ss_pred             ecCCCCCeEEEEecCCCceEEEEee---cCCccEEEcccc
Q 020798          283 LEGHTDPVISVASHPTENIIASGAL---DNDRTVKIWTQE  319 (321)
Q Consensus       283 ~~~h~~~v~~~~~~p~~~~l~s~~~---d~~~~i~iw~~~  319 (321)
                      +..|...|..++|+|||++++.+..   +.++.|+|||.+
T Consensus       363 l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~  402 (432)
T d1qksa2         363 ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK  402 (432)
T ss_dssp             CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECC
Confidence            3457778999999999998866543   356889999964

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=2.6e-25  Score=189.37  Aligned_cols=308  Identities=9%  Similarity=0.030  Sum_probs=202.9

Q ss_pred             cccccCCc--ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEEC
Q 020798            5 QSLESFRP--YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFS   82 (321)
Q Consensus         5 ~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~   82 (321)
                      +++..++.  .++...+..| ..+..++|||||++|++++.|+.+++||+.......   ...+....+|...+.+++|+
T Consensus        42 g~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~---~~~i~~~~~~~~~~~s~~~s  117 (426)
T d1hzua2          42 GQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK---VAEIKIGIEARSVESSKFKG  117 (426)
T ss_dssp             TEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE---EEEEECCSEEEEEEECCSTT
T ss_pred             CEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE---EEEEeCCCCCcceEEeeeec
Confidence            34444433  3456677777 458999999999999999999999999986532100   01122234566777788899


Q ss_pred             CCCCEEEE-EeCCCcEEEEecCCcceeeeeecCccc-----------EEEEEECCCCCEEEEee-CCCcEEEEecCCCEE
Q 020798           83 SDSRFLVS-ASDDKTIRLWDVPTATCLKTLIGHTNY-----------VFCVNFNPQSNMIVSGA-FDETVRIWDVKTGKC  149 (321)
Q Consensus        83 ~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~  149 (321)
                      |||+++++ +..++.+++||..++.+......|...           ...+..++++..++... ..+.+.+++......
T Consensus       118 pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  197 (426)
T d1hzua2         118 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN  197 (426)
T ss_dssp             CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS
T ss_pred             CCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc
Confidence            99998754 458899999999998877666554433           34455566665554433 334555555444331


Q ss_pred             -EEEEeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEeCCCCceeeeeccCCC-CCeEEEEEccCCC-EE-E-EEecCCe
Q 020798          150 -LKVLPAHSDPVTAVDFNRDGTMIVTSS-YDGLCRIWDASTGHCMKTLIDDEN-PPVSFVKFSPNGK-FI-L-VGTLDNT  223 (321)
Q Consensus       150 -~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~l-~-~~~~d~~  223 (321)
                       ......+...+..++|+|++++++++. .+..+.+++..+++.......... .......+...+. .+ . ....|+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  277 (426)
T d1hzua2         198 LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGS  277 (426)
T ss_dssp             CEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCE
T ss_pred             eeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCce
Confidence             112234567788999999999877765 566788999998877655432221 1122233333322 22 2 2335778


Q ss_pred             EEEEeCCC-------CcEEEEEeccCCceeEEEeEEEecCCeEEEE-------eCCCCeEEEEEcccceEEEEe------
Q 020798          224 LRLWNYST-------GKILKTYTGHTNSKYCISSTFSVTNGKYIVS-------GSEDSCVYLWELQSRKVVQKL------  283 (321)
Q Consensus       224 i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~dg~i~vwd~~~~~~~~~~------  283 (321)
                      +.+|+...       ++....+.+|......+   ...|++++|++       ++.+++|+|||+.+++...++      
T Consensus       278 v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v---~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~  354 (426)
T d1hzua2         278 ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI---KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW  354 (426)
T ss_dssp             EEEEECCTTTCTTTBTSEEEEEECSSSCCCCE---ECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH
T ss_pred             EEEeeccccccccccceEeEEEecCCCceeEE---EcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchh
Confidence            88887643       46788888887665444   34589999984       456789999999987655433      


Q ss_pred             ---cCCCCCeEEEEecCCCceEE-EE--eecCCccEEEcccc
Q 020798          284 ---EGHTDPVISVASHPTENIIA-SG--ALDNDRTVKIWTQE  319 (321)
Q Consensus       284 ---~~h~~~v~~~~~~p~~~~l~-s~--~~d~~~~i~iw~~~  319 (321)
                         ..|...|..++|+|||+++. ++  +.+.++.|+|||.+
T Consensus       355 ~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         355 ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             HCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             cccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence               34566799999999998763 33  23467889999975

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=4.6e-23  Score=166.58  Aligned_cols=262  Identities=12%  Similarity=0.143  Sum_probs=196.1

Q ss_pred             EEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE-EEeCCCcEEEEecCCcceeeeeecCccc
Q 020798           39 ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV-SASDDKTIRLWDVPTATCLKTLIGHTNY  117 (321)
Q Consensus        39 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~  117 (321)
                      ++.+.|+.|.+||+.+.        +.+..+.. ...+..++|+|+|++|+ +++.++.|++||+.+++.+..+..+.. 
T Consensus         6 V~~~~~~~v~v~D~~t~--------~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-   75 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN--------KVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-   75 (301)
T ss_dssp             EEETTTTEEEEEETTTT--------EEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-
T ss_pred             EEECCCCEEEEEECCCC--------eEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-
Confidence            45678999999997643        22333332 34578899999999875 667889999999999998888776654 


Q ss_pred             EEEEEECCCCCEEE-EeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEE-EEeCCCeEEEEeCCCCceeeee
Q 020798          118 VFCVNFNPQSNMIV-SGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV-TSSYDGLCRIWDASTGHCMKTL  195 (321)
Q Consensus       118 v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~  195 (321)
                      +..+.+++++..++ ++..++.+.+|+..+++....+..+ .....+.|+|++..++ ++..++.+.+|+..+.......
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence            57899999998654 5567788999999999888877654 4568899999998765 4556888999999988766655


Q ss_pred             ccCCCCCeEEEEEccCCCEEEEEecC-CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEe---CCCCeEEE
Q 020798          196 IDDENPPVSFVKFSPNGKFILVGTLD-NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG---SEDSCVYL  271 (321)
Q Consensus       196 ~~~~~~~~~~~~~~~~g~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~v  271 (321)
                      ..  ...+..+.++|++..++++..+ +.+.+|+....+.......+..+   .. ....+++..++.+   ..++.|++
T Consensus       155 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~g~~~~v~~~~~~~~~v~v  228 (301)
T d1l0qa2         155 SV--GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAP---SG-IAVNPEGTKAYVTNVDKYFNTVSM  228 (301)
T ss_dssp             EC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEE---EE-EEECTTSSEEEEEEECSSCCEEEE
T ss_pred             cc--CCCceEEEeeccccceeeecccccccccccccceeeeecccccCCc---ce-eeccccccccccccccceeeeeee
Confidence            33  3346788999999998887765 67778887777776666544322   22 2233566665543   34578999


Q ss_pred             EEcccceEEEEecCCCCCeEEEEecCCCceE-EEEeecCCccEEEccccc
Q 020798          272 WELQSRKVVQKLEGHTDPVISVASHPTENII-ASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       272 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~~~d~~~~i~iw~~~~  320 (321)
                      ||+.+++.+..+..+ ..+.+++|+|||++| ++++  .++.|++||.+.
T Consensus       229 ~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~--~~~~i~v~D~~t  275 (301)
T d1l0qa2         229 IDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALS--FCNTVSVIDTAT  275 (301)
T ss_dssp             EETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET--TTTEEEEEETTT
T ss_pred             eecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEEC--CCCeEEEEECCC
Confidence            999999988887754 457999999999976 5554  457999999864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=7.7e-25  Score=186.43  Aligned_cols=279  Identities=11%  Similarity=0.069  Sum_probs=194.5

Q ss_pred             EECCCCC--EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcce
Q 020798           30 KFSHDGR--LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATC  107 (321)
Q Consensus        30 ~~s~~g~--~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  107 (321)
                      .+++|.+  ++++.+.|+.|++||+..        .+.+..+..|. .+..++|+|||++|++++.|+.+++||+.+++.
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t--------~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~   95 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDS--------KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEP   95 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTT--------CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCC--------CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCce
Confidence            3555533  567788999999999754        33456666664 589999999999999999999999999988864


Q ss_pred             eee-----eecCcccEEEEEECCCCCEEEE-eeCCCcEEEEecCCCEEEEEEeCCCCCe-----------eEEEEccCCC
Q 020798          108 LKT-----LIGHTNYVFCVNFNPQSNMIVS-GAFDETVRIWDVKTGKCLKVLPAHSDPV-----------TAVDFNRDGT  170 (321)
Q Consensus       108 ~~~-----~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~  170 (321)
                      ...     ..+|...+.+++|+|||+++++ +..++.+++||..++.....+..+...+           ..+.+++++.
T Consensus        96 ~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~  175 (426)
T d1hzua2          96 TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  175 (426)
T ss_dssp             EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             eEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCC
Confidence            332     2356666777888999998754 5588999999999998877766554433           3455555555


Q ss_pred             EEEEEe-CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcEEEEEeccCCceeEE
Q 020798          171 MIVTSS-YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKILKTYTGHTNSKYCI  248 (321)
Q Consensus       171 ~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  248 (321)
                      .++... ..+.+.+++.................+..+.++|++++++++. .+..+.+++..+++.+.............
T Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (426)
T d1hzua2         176 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR  255 (426)
T ss_dssp             EEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSC
T ss_pred             EEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccc
Confidence            544433 3345555555444322222223455678899999999988876 45679999999999888775433221111


Q ss_pred             EeEEEecCC-e-EEEEeCCCCeEEEEEccc-------ceEEEEecCCCCCeEEEEecCCCceEEE-------EeecCCcc
Q 020798          249 SSTFSVTNG-K-YIVSGSEDSCVYLWELQS-------RKVVQKLEGHTDPVISVASHPTENIIAS-------GALDNDRT  312 (321)
Q Consensus       249 ~~~~~~~~~-~-~l~~~~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~l~s-------~~~d~~~~  312 (321)
                      ...+..+.. . ..+..+.|+.+.+|+...       .+....+.+|...+.+++|+|++++|++       ++  .+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~--~~~t  333 (426)
T d1hzua2         256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDAR--ISQS  333 (426)
T ss_dssp             CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHH--HHTC
T ss_pred             eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcc--cCCE
Confidence            111222222 2 233456788998988654       3677889999999999999999999995       33  2478


Q ss_pred             EEEcccc
Q 020798          313 VKIWTQE  319 (321)
Q Consensus       313 i~iw~~~  319 (321)
                      |+|||.+
T Consensus       334 v~vwd~~  340 (426)
T d1hzua2         334 VAVFDLK  340 (426)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999975

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=1.6e-23  Score=171.91  Aligned_cols=264  Identities=12%  Similarity=0.082  Sum_probs=187.1

Q ss_pred             CEEEEecCCceEEEeeccccCCCCCCCCCccccccc--ccccEEEEEECCCCCEEE-EEeCCCcEEEEecCCcceeeeee
Q 020798           36 RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTG--HEQGVSDLVFSSDSRFLV-SASDDKTIRLWDVPTATCLKTLI  112 (321)
Q Consensus        36 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~  112 (321)
                      +|+++++.|+.|.+||+...        +.+..+..  +...+.+++|+|||++++ +++.++.|.+||+.+++.+..+.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~--------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~   73 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM--------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID   73 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCC--------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence            58999999999999998643        23333432  345578899999999874 66789999999999999877765


Q ss_pred             cCcc-----cEEEEEECCCCCEEEEee------------CCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE
Q 020798          113 GHTN-----YVFCVNFNPQSNMIVSGA------------FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS  175 (321)
Q Consensus       113 ~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  175 (321)
                      .+..     .+..++++|+++.++++.            .+..+.+||..+++....+..+ ..+..++|+|++++++++
T Consensus        74 ~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~  152 (337)
T d1pbyb_          74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE
T ss_pred             cCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEE
Confidence            5432     345789999999988765            3578899999999888877654 457889999999999888


Q ss_pred             eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC------------------------CCEEEEEecCCeEEEEeCCC
Q 020798          176 SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN------------------------GKFILVGTLDNTLRLWNYST  231 (321)
Q Consensus       176 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------g~~l~~~~~d~~i~i~d~~~  231 (321)
                      +.+  +.+||..+++....+.......  ...+.|+                        ......+..++.+.+||..+
T Consensus       153 ~~~--~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (337)
T d1pbyb_         153 GRD--LHVMDPEAGTLVEDKPIQSWEA--ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET  228 (337)
T ss_dssp             SSS--EEEEETTTTEEEEEECSTTTTT--TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred             cCC--cceeeeecCcEEEEeecCCccc--cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCC
Confidence            654  6789998877665542211100  0011111                        11111222345688999888


Q ss_pred             CcEEEEE-eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCC
Q 020798          232 GKILKTY-TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDND  310 (321)
Q Consensus       232 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~  310 (321)
                      ++..... ..+....   ......+++.+++.+  ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.  +
T Consensus       229 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~--~  300 (337)
T d1pbyb_         229 GEMAMREVRIMDVFY---FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGA--L  300 (337)
T ss_dssp             CCEEEEEEEECSSCE---EEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESB--S
T ss_pred             CcEEEEEecCCCcce---EEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeC--C
Confidence            8765443 2222222   223344677777655  5889999999999988875 4567899999999999999875  4


Q ss_pred             ccEEEccccc
Q 020798          311 RTVKIWTQEK  320 (321)
Q Consensus       311 ~~i~iw~~~~  320 (321)
                      +.|++||.+.
T Consensus       301 ~~i~v~D~~t  310 (337)
T d1pbyb_         301 GDLAAYDAET  310 (337)
T ss_dssp             SEEEEEETTT
T ss_pred             CcEEEEECCC
Confidence            7899999863

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=4.5e-24  Score=175.85  Aligned_cols=272  Identities=12%  Similarity=0.070  Sum_probs=183.4

Q ss_pred             EEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccc-cccccEEEEEECCCCCEEE-EEeCCCcEEEEecCCcc
Q 020798           29 VKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFT-GHEQGVSDLVFSSDSRFLV-SASDDKTIRLWDVPTAT  106 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~  106 (321)
                      ++|++++++|++++.++.|.+||+...        +.+..++ .|...+.+++|+|||++++ ++..++.|.+||+.+++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~--------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~   73 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK   73 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC--------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe
Confidence            578999999999999999999998642        3344444 3456688999999999875 55678999999999998


Q ss_pred             eeeeeecCc------ccEEEEEECCCCCEEEEee------------CCCcEEEEecCCCEEEEEEeC--CCCCeeEEEEc
Q 020798          107 CLKTLIGHT------NYVFCVNFNPQSNMIVSGA------------FDETVRIWDVKTGKCLKVLPA--HSDPVTAVDFN  166 (321)
Q Consensus       107 ~~~~~~~~~------~~v~~~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~~  166 (321)
                      ....+....      ..+..++++|||+++++++            .+..+.+|+..+++....+..  ....+..+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (346)
T d1jmxb_          74 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA  153 (346)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred             eeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEec
Confidence            776553221      2345789999999887764            467788898877654333222  23345566777


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccC--------------------------CCEEEEEec
Q 020798          167 RDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPN--------------------------GKFILVGTL  220 (321)
Q Consensus       167 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------g~~l~~~~~  220 (321)
                      +++..++++   +.+.+|+..+++....+.....  ...+.++|+                          ...+.++..
T Consensus       154 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (346)
T d1jmxb_         154 DDGSLYVAG---PDIYKMDVKTGKYTVALPLRNW--NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  228 (346)
T ss_dssp             TTSCEEEES---SSEEEECTTTCCEEEEECSTTC--CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             CCCEEEEeC---CcceEEEccCCCEEEEEecCCC--ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccC
Confidence            777665542   4588999888776655432111  111122222                          222333445


Q ss_pred             CCeEEEEeCCCCcEEEEE-eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCC
Q 020798          221 DNTLRLWNYSTGKILKTY-TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTE  299 (321)
Q Consensus       221 d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~  299 (321)
                      +..+.+||..++...... ..+....  ....+ .+++.+++.+. ++.|++||..+++.+..+. +...+.+++|+|||
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG  303 (346)
T d1jmxb_         229 LYGYLSVDLKTGKTHTQEFADLTELY--FTGLR-SPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKG  303 (346)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCE--EEEEE-CSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSS
T ss_pred             CceEEEEECCCCceEEEEeeccccee--EEEEE-eCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCC
Confidence            567888998887765543 2333322  22233 34555555544 4679999999999888775 44578999999999


Q ss_pred             ceEEEEeecCCccEEEccccc
Q 020798          300 NIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       300 ~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      ++|++++.|  +.|++||.+.
T Consensus       304 ~~l~v~~~d--~~v~v~D~~t  322 (346)
T d1jmxb_         304 DKLYLGGTF--NDLAVFNPDT  322 (346)
T ss_dssp             SCEEEESBS--SEEEEEETTT
T ss_pred             CEEEEEeCC--CcEEEEECcc
Confidence            999999854  7899999863

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=2.5e-20  Score=150.27  Aligned_cols=253  Identities=15%  Similarity=0.172  Sum_probs=188.5

Q ss_pred             eeeeeccCCcccEEEEEECCCCCEE-EEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE-EE
Q 020798           14 TLTQTLNGHLRAISSVKFSHDGRLL-ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV-SA   91 (321)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~s~~g~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-~~   91 (321)
                      ++.+.+... ..+..++|+|||++| ++++.++.|.+||+...        ..+..+..|. .+..+.|+++++.++ ++
T Consensus        23 ~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   92 (301)
T d1l0qa2          23 KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------NVIATVPAGS-SPQGVAVSPDGKQVYVTN   92 (301)
T ss_dssp             EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------EEEEEEECSS-SEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC--------ceeeeeeccc-cccccccccccccccccc
Confidence            345555433 456789999999987 56778899999987542        2344555544 468899999998665 55


Q ss_pred             eCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCC
Q 020798           92 SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGT  170 (321)
Q Consensus        92 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (321)
                      ..++.+.+|+..+++....+..+ ....++.++|+++.++ ++..++.+.+|+..+.+....+..+ ..+..++++|++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  170 (301)
T d1l0qa2          93 MASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGT  170 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSS
T ss_pred             cccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeecccc
Confidence            66778999999998877766644 4567899999998865 5566888999999999888877654 4578899999999


Q ss_pred             EEEEEeCC-CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec---CCeEEEEeCCCCcEEEEEeccCCcee
Q 020798          171 MIVTSSYD-GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL---DNTLRLWNYSTGKILKTYTGHTNSKY  246 (321)
Q Consensus       171 ~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~  246 (321)
                      .+++++.+ +.+.+|+............  ...+..++++++++.++++..   ++.|.+||+.+++.+..+..+.. ..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~-~~  247 (301)
T d1l0qa2         171 KVYVANFDSMSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PA  247 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EE
T ss_pred             ceeeecccccccccccccceeeeecccc--cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCC-EE
Confidence            88777654 6677888776655444422  234567899999998877654   46899999999998888765433 22


Q ss_pred             EEEeEEEecCCeEE-EEeCCCCeEEEEEcccceEEEEec
Q 020798          247 CISSTFSVTNGKYI-VSGSEDSCVYLWELQSRKVVQKLE  284 (321)
Q Consensus       247 ~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~  284 (321)
                      .   ....+||++| ++++.++.|++||+.+++++.++.
T Consensus       248 ~---va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         248 G---IAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             E---EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             E---EEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            2   3345788866 678889999999999999888775

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=7.1e-22  Score=167.94  Aligned_cols=234  Identities=11%  Similarity=0.010  Sum_probs=164.9

Q ss_pred             CCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCccee--ee
Q 020798           33 HDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCL--KT  110 (321)
Q Consensus        33 ~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~  110 (321)
                      ++.-++++.+.++.+.+||...        .+.+..+..| ..+..++|+|||+++++++.|+.+++||+.+++..  ..
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t--------~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~  100 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGST--------YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE  100 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTT--------CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred             CCcEEEEEEcCCCEEEEEECCC--------CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE
Confidence            3334468889999999998754        3345666655 36999999999999999999999999999876532  22


Q ss_pred             e---ecCcccEEEEEECCCCCEE-EEeeCCCcEEEEecCCCEEEEEEeCC-----------CCCeeEEEEccCCCEEE-E
Q 020798          111 L---IGHTNYVFCVNFNPQSNMI-VSGAFDETVRIWDVKTGKCLKVLPAH-----------SDPVTAVDFNRDGTMIV-T  174 (321)
Q Consensus       111 ~---~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~-~  174 (321)
                      +   ..|...+.+..|+|||++| ++++.++.+++||..+++.+..+..+           ......+.++|++..++ +
T Consensus       101 i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs  180 (432)
T d1qksa2         101 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  180 (432)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             EecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE
Confidence            2   3455666677788999986 67888999999999999887776543           34456788999988654 5


Q ss_pred             EeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec-CCeEEEEeCCCCcEEEEEeccCC---ceeEEEe
Q 020798          175 SSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL-DNTLRLWNYSTGKILKTYTGHTN---SKYCISS  250 (321)
Q Consensus       175 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~  250 (321)
                      ...++.+.+||..+.+............+..++|+|+|+++++++. ++.+.++|..+++.+..+.....   .......
T Consensus       181 ~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~  260 (432)
T d1qksa2         181 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF  260 (432)
T ss_dssp             ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred             EccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccce
Confidence            5678999999998776544332234456788999999998887765 56899999998888776643211   0111111


Q ss_pred             EEEecCCeEEEEe-CCCCeEEEEEccc
Q 020798          251 TFSVTNGKYIVSG-SEDSCVYLWELQS  276 (321)
Q Consensus       251 ~~~~~~~~~l~~~-~~dg~i~vwd~~~  276 (321)
                       .....+...++. ..++.|.+|+...
T Consensus       261 -~~~~~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         261 -VHPTFGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             -EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             -ecCCCCceecccccCCceEEeccccc
Confidence             112233334333 3477788887643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.2e-20  Score=150.61  Aligned_cols=275  Identities=10%  Similarity=0.206  Sum_probs=180.6

Q ss_pred             EEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe-CCCcEEEEecCCcceeeee---e
Q 020798           37 LLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS-DDKTIRLWDVPTATCLKTL---I  112 (321)
Q Consensus        37 ~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~---~  112 (321)
                      .+++++.++.|++|++....      ...+.....|.+.+..|+|+|||++|++++ .|+.|++|++.........   .
T Consensus         6 v~v~~~~~~~I~v~~~~~~~------~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG------ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS------CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCC------CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence            45677899999999885311      111222335778899999999999986554 5899999999765433222   2


Q ss_pred             cCcccEEEEEECCCCCEEEEeeC-CCcEEEEecCCCEEEEE--EeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEeCCC
Q 020798          113 GHTNYVFCVNFNPQSNMIVSGAF-DETVRIWDVKTGKCLKV--LPAHSDPVTAVDFNRDGTMIVTSS-YDGLCRIWDAST  188 (321)
Q Consensus       113 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~  188 (321)
                      .+...+..++++|||++|++++. ++.+.+|+.........  ...+...+.++.++|+++.++.++ .+..+.+|+...
T Consensus        80 ~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          80 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            23445668999999999888874 67899998876654333  345667788999999999887776 456789998765


Q ss_pred             Cceee-----eeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCc----EEEEEec----cCCceeEEEeEEEe
Q 020798          189 GHCMK-----TLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGK----ILKTYTG----HTNSKYCISSTFSV  254 (321)
Q Consensus       189 ~~~~~-----~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~----~~~~~~~----~~~~~~~~~~~~~~  254 (321)
                      .....     ............++|++++.+++... ..+...+++.....    .......    ...........+ .
T Consensus       160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s  238 (333)
T d1ri6a_         160 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI-T  238 (333)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE-C
T ss_pred             CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE-e
Confidence            43211     11222334567899999999887665 45677787754321    1222211    111111222223 3


Q ss_pred             cCCe-EEEEeCCCCeEEEEEcccceEEEE---ecCCCCCeEEEEecCCCceEEEEeecCCccEEEcccc
Q 020798          255 TNGK-YIVSGSEDSCVYLWELQSRKVVQK---LEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       255 ~~~~-~l~~~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~  319 (321)
                      ++++ .++++..++.+.+|++........   .......+.+++|+|||++|++++.+ ++.|++|+..
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~-~~~v~v~~id  306 (333)
T d1ri6a_         239 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK-SHHISVYEIV  306 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT-TCEEEEEEEE
T ss_pred             cccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC-CCeEEEEEEE
Confidence            5665 455667788999999875432222   22234567899999999998877654 4689999653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=4.2e-21  Score=157.24  Aligned_cols=255  Identities=12%  Similarity=0.102  Sum_probs=179.1

Q ss_pred             eeeeecc--CCcccEEEEEECCCCCEE-EEecCCceEEEeeccccCCCCCCCCCccccccc-----ccccEEEEEECCCC
Q 020798           14 TLTQTLN--GHLRAISSVKFSHDGRLL-ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTG-----HEQGVSDLVFSSDS   85 (321)
Q Consensus        14 ~~~~~~~--~h~~~v~~~~~s~~g~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~i~~~~~~~~~   85 (321)
                      ++.+.+.  .+...+.+++|+|||+++ ++++.++.|.+||+....        .+..+..     +...+..++|+|++
T Consensus        22 ~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~--------~~~~~~~~~~~~~~~~~~~v~~s~dg   93 (337)
T d1pbyb_          22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--------TLGRIDLSTPEERVKSLFGAALSPDG   93 (337)
T ss_dssp             EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--------EEEEEECCBTTEEEECTTCEEECTTS
T ss_pred             eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc--------EEEEEecCCCcccccceeeEEEcCCC
Confidence            3445454  344567899999999987 567789999999986432        2222222     22345678999999


Q ss_pred             CEEEEEe------------CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE
Q 020798           86 RFLVSAS------------DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL  153 (321)
Q Consensus        86 ~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  153 (321)
                      ++++++.            .+..+.+||..+++....+.. ...+..++++|+++++++++.  .+.+||..+++....+
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~  170 (337)
T d1pbyb_          94 KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDK  170 (337)
T ss_dssp             SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEE
T ss_pred             cEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEe
Confidence            9988775            457789999999887776654 445778999999999998864  4788999999887776


Q ss_pred             eCCCCCeeEEEEccCCC----------E--------------EEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEc
Q 020798          154 PAHSDPVTAVDFNRDGT----------M--------------IVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFS  209 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~----------~--------------l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      +.+... ....+.|++.          .              ......++.+.+||..++................+.++
T Consensus       171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (337)
T d1pbyb_         171 PIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN  249 (337)
T ss_dssp             CSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred             ecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEec
Confidence            543321 1111122111          0              01112234588888888776554444555567788899


Q ss_pred             cCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCC
Q 020798          210 PNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGH  286 (321)
Q Consensus       210 ~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h  286 (321)
                      |++.+++.+  ++.|++||+.+++.+..+... ....++   ...+||++|++++.++.|+|||..+.+.+..++.+
T Consensus       250 ~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~-~~~~~~---~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         250 PAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSV---NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEE---EECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             ccceEEEEc--cccEEEEECCCCcEEEEEcCC-CCEEEE---EECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            999988755  588999999999998887543 233333   33589999999999999999999999988877653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=5.4e-19  Score=147.02  Aligned_cols=283  Identities=11%  Similarity=-0.004  Sum_probs=187.3

Q ss_pred             cCCcccEEEEEECCCCCEEEEe-----cCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe--
Q 020798           20 NGHLRAISSVKFSHDGRLLASS-----SADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS--   92 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~-----~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~--   92 (321)
                      ..+..++..++++|||+.+++.     +..+.+.+||...        .+.+..+..+..  ..++|+|||++|++++  
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t--------g~~~~~~~~~~~--~~~a~SpDG~~l~va~~~   86 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS--------GSILGHVNGGFL--PNPVAAHSGSEFALASTS   86 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCC--------CCEEEEEeCCCC--ccEEEcCCCCEEEEEeec
Confidence            4678899999999999998764     2345677776543        233444544443  3689999999998875  


Q ss_pred             --------CCCcEEEEecCCcceeeeeecCcccE-------EEEEECCCCCEEEEe--eCCCcEEEEecCCCEEEEEEeC
Q 020798           93 --------DDKTIRLWDVPTATCLKTLIGHTNYV-------FCVNFNPQSNMIVSG--AFDETVRIWDVKTGKCLKVLPA  155 (321)
Q Consensus        93 --------~d~~i~iwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~  155 (321)
                              .++.|.+||..+++....+..+....       ..+.++++++.++..  ..++.+.+|+....+.....  
T Consensus        87 ~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~--  164 (373)
T d2madh_          87 FSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL--  164 (373)
T ss_pred             CCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe--
Confidence                    35789999999998877665554433       346778888765544  34567888888776654333  


Q ss_pred             CCCCeeEEEEccCCCE-EEEEeCCCeEEEEeCCCCceeeeeccC-----CCCCeEEEEEccCCCEEEEEecCCeEEEEeC
Q 020798          156 HSDPVTAVDFNRDGTM-IVTSSYDGLCRIWDASTGHCMKTLIDD-----ENPPVSFVKFSPNGKFILVGTLDNTLRLWNY  229 (321)
Q Consensus       156 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~  229 (321)
                        .....+.++|+++. +++.+.|+.+.+|+...+.........     .........+.+++.+ +..+.++.+.+|+.
T Consensus       165 --~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~  241 (373)
T d2madh_         165 --SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADI  241 (373)
T ss_pred             --ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEc
Confidence              23467889999875 467889999999999877655433211     1122334556666644 45567888999998


Q ss_pred             CCCcEEEEEe--ccCCce----------eEEE-------eEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCe
Q 020798          230 STGKILKTYT--GHTNSK----------YCIS-------STFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV  290 (321)
Q Consensus       230 ~~~~~~~~~~--~~~~~~----------~~~~-------~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v  290 (321)
                      ..........  ......          ..+.       ......++..++....++.+.+||..+++.+..+. +...+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~  320 (373)
T d2madh_         242 SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDV  320 (373)
T ss_pred             CCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCe
Confidence            7664332211  111000          0000       01112234455667778899999999999888775 55678


Q ss_pred             EEEEecCCCce--EEEEeecCCccEEEccccc
Q 020798          291 ISVASHPTENI--IASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       291 ~~~~~~p~~~~--l~s~~~d~~~~i~iw~~~~  320 (321)
                      .+++|+|||+.  +++++  .|+.|++||.+.
T Consensus       321 ~~~a~spDG~~~l~vt~~--~d~~v~v~D~~t  350 (373)
T d2madh_         321 DAISVAQDGGPDLYALSA--GTEVLHIYDAGA  350 (373)
T ss_pred             eEEEECCCCCEEEEEEeC--CCCeEEEEECCC
Confidence            99999999984  35555  568999999863

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=6.5e-19  Score=144.54  Aligned_cols=265  Identities=14%  Similarity=0.084  Sum_probs=175.9

Q ss_pred             ceeeeecc-CCcccEEEEEECCCCCEE-EEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEE
Q 020798           13 YTLTQTLN-GHLRAISSVKFSHDGRLL-ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVS   90 (321)
Q Consensus        13 ~~~~~~~~-~h~~~v~~~~~s~~g~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~   90 (321)
                      .++.++++ .|...+.+++|+|||+++ ++++.++.|.+||+..........  .......+...+..++|+|||+++++
T Consensus        28 ~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~--~~~~~~~~~~~~~~v~~s~DG~~l~v  105 (346)
T d1jmxb_          28 DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN--LSSVPGEVGRSMYSFAISPDGKEVYA  105 (346)
T ss_dssp             TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--SCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred             CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec--ccccccccCCceEEEEEecCCCEEEE
Confidence            34555555 456678899999999987 556688999999986532110000  00011122234567999999998877


Q ss_pred             Ee------------CCCcEEEEecCCcceeeeeecC--cccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC
Q 020798           91 AS------------DDKTIRLWDVPTATCLKTLIGH--TNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH  156 (321)
Q Consensus        91 ~~------------~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  156 (321)
                      ++            .+..+.+|+..+++....+..+  ...+..+.+++++..++++   +.+.+|++.+++....+..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  182 (346)
T d1jmxb_         106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLR  182 (346)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECST
T ss_pred             EecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecC
Confidence            64            4677899998877654433222  2334556667777665543   46899999988887776544


Q ss_pred             CCCeeEEEEccCCCE--------------------------EEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEcc
Q 020798          157 SDPVTAVDFNRDGTM--------------------------IVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSP  210 (321)
Q Consensus       157 ~~~v~~~~~~~~~~~--------------------------l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  210 (321)
                      .. ...+.++|++..                          +.++..+..+.+||..++.........+...+..+.+++
T Consensus       183 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (346)
T d1jmxb_         183 NW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP  261 (346)
T ss_dssp             TC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECS
T ss_pred             CC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeC
Confidence            32 233334443322                          222334456778888777655555445556677788888


Q ss_pred             CCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCC
Q 020798          211 NGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTD  288 (321)
Q Consensus       211 ~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~  288 (321)
                      ++.+++... ++.+.+||..+++.+..+.... ....+   ...+||++|++++.|+.|++||+++++.+.+++.+.+
T Consensus       262 ~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~-~~~~v---a~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         262 KDPNQIYGV-LNRLAKYDLKQRKLIKAANLDH-TYYCV---AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             SCTTEEEEE-ESEEEEEETTTTEEEEEEECSS-CCCEE---EECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             CCCEEEEec-CCeEEEEECCCCcEEEEEcCCC-CEEEE---EEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence            888777655 4579999999999888775432 33333   3347999999999999999999999999988875543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=9.4e-19  Score=144.44  Aligned_cols=273  Identities=15%  Similarity=0.127  Sum_probs=172.2

Q ss_pred             EEECCCCCEEEEe-----cCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe----------C
Q 020798           29 VKFSHDGRLLASS-----SADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS----------D   93 (321)
Q Consensus        29 ~~~s~~g~~l~~~-----~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~----------~   93 (321)
                      .+.+|||+++++.     ..+..+.+||....        +.+..+..+.  ...++|+|||++|++++          .
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg--------~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~   76 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--------RVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGER   76 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--------EEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCC--------cEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCC
Confidence            4678999998764     34667999986532        2344444433  34799999999887643          4


Q ss_pred             CCcEEEEecCCcceeeeeecCc-------ccEEEEEECCCCCEEEEee--CCCcEEEEecCCCEEEEEEeCCCC------
Q 020798           94 DKTIRLWDVPTATCLKTLIGHT-------NYVFCVNFNPQSNMIVSGA--FDETVRIWDVKTGKCLKVLPAHSD------  158 (321)
Q Consensus        94 d~~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~------  158 (321)
                      ++.|++||..+++....+..+.       .....++|+|+++.++.++  .+..+.+|+..+++....+..+..      
T Consensus        77 d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d2bbkh_          77 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT  156 (355)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec
Confidence            7889999999998776654322       1234578999999877664  467899999999988877665432      


Q ss_pred             -CeeEEEEccCCCEEEEEe-CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEE
Q 020798          159 -PVTAVDFNRDGTMIVTSS-YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILK  236 (321)
Q Consensus       159 -~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~  236 (321)
                       ....+.+++++..++... .++.+.+++......      .....+....+.+++..++.++.++.+.+|++..++...
T Consensus       157 ~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  230 (355)
T d2bbkh_         157 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF  230 (355)
T ss_dssp             ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE
T ss_pred             CCcceEEEcCCCCEEEEEecCCCeEEEEecccccc------eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEE
Confidence             122345555555443332 233344444332211      112223345677778888888999999999988765322


Q ss_pred             --EEeccCCce----e---EEEeEEEecCCeEEEEeCC----------CCeEEEEEcccceEEEEecCCCCCeEEEEecC
Q 020798          237 --TYTGHTNSK----Y---CISSTFSVTNGKYIVSGSE----------DSCVYLWELQSRKVVQKLEGHTDPVISVASHP  297 (321)
Q Consensus       237 --~~~~~~~~~----~---~~~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p  297 (321)
                        ....+....    .   ........+++..++....          ...|.+||..+++.+..+.. ...+.+++|+|
T Consensus       231 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~sp  309 (355)
T d2bbkh_         231 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQ  309 (355)
T ss_dssp             CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECC
T ss_pred             EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcC
Confidence              111111000    0   0001122356665554332          24799999999998887764 35689999999


Q ss_pred             CCce--EEEEeecCCccEEEccccc
Q 020798          298 TENI--IASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       298 ~~~~--l~s~~~d~~~~i~iw~~~~  320 (321)
                      ||+.  +++++  .|+.|++||.+.
T Consensus       310 DG~~~l~v~~~--~d~~i~v~D~~t  332 (355)
T d2bbkh_         310 DEKPLLYALST--GDKTLYIHDAES  332 (355)
T ss_dssp             SSSCEEEEEET--TTTEEEEEETTT
T ss_pred             CCCeEEEEEEC--CCCEEEEEECCC
Confidence            9974  34443  468999999864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.1e-16  Score=127.82  Aligned_cols=251  Identities=10%  Similarity=0.182  Sum_probs=160.6

Q ss_pred             CCcccEEEEEECCCCCEEEE-ecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC-CCcEE
Q 020798           21 GHLRAISSVKFSHDGRLLAS-SSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD-DKTIR   98 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~-~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-d~~i~   98 (321)
                      .|.+.+..++|||||++|++ +..|+.|.+|++.....     .........+...+..++|+|||++|++++. ++.+.
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~-----~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~  108 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG-----ALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVS  108 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-----CEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC-----cEEEeeecccCCCceEEEEcCCCCEEeecccCCCcee
Confidence            57789999999999999855 55689999998754211     0011111223455778999999999988875 66899


Q ss_pred             EEecCCcceee--eeecCcccEEEEEECCCCCEEEEee-CCCcEEEEecCCCEEEE------EEeCCCCCeeEEEEccCC
Q 020798           99 LWDVPTATCLK--TLIGHTNYVFCVNFNPQSNMIVSGA-FDETVRIWDVKTGKCLK------VLPAHSDPVTAVDFNRDG  169 (321)
Q Consensus        99 iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~------~~~~~~~~v~~~~~~~~~  169 (321)
                      +|+........  ....+...+.++.++|++++++.++ .+..|.+|+........      ...........++|++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         109 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             eeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence            99876654332  3345566678889999999887766 45578999976543221      112234556789999999


Q ss_pred             CEEEEEe-CCCeEEEEeCCCCce----eeeecc-----CCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcEEEEE
Q 020798          170 TMIVTSS-YDGLCRIWDASTGHC----MKTLID-----DENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       170 ~~l~~~~-~dg~i~~~d~~~~~~----~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~~~~~  238 (321)
                      ..++... ..+...+++......    ......     ........+++++++++++... .++.+.+|++.........
T Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (333)
T d1ri6a_         189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK  268 (333)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred             eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEE
Confidence            8776554 566777887643211    111110     1123456688999999877654 5678999987654322222


Q ss_pred             e---ccCCceeEEEeEEEecCCeEEEEeC-CCCeEEEEEc--ccceE
Q 020798          239 T---GHTNSKYCISSTFSVTNGKYIVSGS-EDSCVYLWEL--QSRKV  279 (321)
Q Consensus       239 ~---~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~--~~~~~  279 (321)
                      .   ........+   ...+||++|++++ .++.|++|++  +++++
T Consensus       269 ~~~~~~~~~p~~~---a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         269 EGFQPTETQPRGF---NVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEECSSSCCCE---EECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEEeCCCCCeeEE---EEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            1   111222222   2347899876654 5689999955  55543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=6.3e-17  Score=133.30  Aligned_cols=265  Identities=11%  Similarity=0.073  Sum_probs=166.9

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEec----------CCceEEEeeccccCCCCCCCCCcccccc-------cccccEE
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSS----------ADKTLLTYSLSSISNSDSTPPSPLQKFT-------GHEQGVS   77 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~i~   77 (321)
                      +...+..+..  ..++|||||++|++.+          .++.|.+||......        +..+.       .......
T Consensus        40 ~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~--------~~~~~~~~~~~~~~~~~~~  109 (355)
T d2bbkh_          40 VIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP--------TADIELPDAPRFLVGTYPW  109 (355)
T ss_dssp             EEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--------EEEEEETTCCCCCBSCCGG
T ss_pred             EEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCE--------EEEEecCCcceeecCCCCc
Confidence            3444444433  3689999999888653          478899998765321        11111       1112345


Q ss_pred             EEEECCCCCEEEEEe--CCCcEEEEecCCcceeeeeecCccc-------EEEEEECCCCCEEEEe-eCCCcEEEEecCCC
Q 020798           78 DLVFSSDSRFLVSAS--DDKTIRLWDVPTATCLKTLIGHTNY-------VFCVNFNPQSNMIVSG-AFDETVRIWDVKTG  147 (321)
Q Consensus        78 ~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~  147 (321)
                      .++|++++++++.+.  .+..+.+|+..+++....+..+...       ...+.+++++..++.. ..++.+.+++....
T Consensus       110 ~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~  189 (355)
T d2bbkh_         110 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF  189 (355)
T ss_dssp             GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC
T ss_pred             eEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc
Confidence            689999999887764  4568999999998877665543322       1234455555544332 23333444433222


Q ss_pred             EEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec-cC----------CCCCeEEEEEccCCCEEE
Q 020798          148 KCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI-DD----------ENPPVSFVKFSPNGKFIL  216 (321)
Q Consensus       148 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~----------~~~~~~~~~~~~~g~~l~  216 (321)
                      .     ..+...+....+.+++..++.++.++.+++|++..+....... ..          .......+++++++..++
T Consensus       190 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~  264 (355)
T d2bbkh_         190 H-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY  264 (355)
T ss_dssp             S-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             c-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEE
Confidence            1     1233345556778888889999999999999998764321100 00          001223478999999887


Q ss_pred             EEecC----------CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe--EEEEeCCCCeEEEEEcccceEEEEec
Q 020798          217 VGTLD----------NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK--YIVSGSEDSCVYLWELQSRKVVQKLE  284 (321)
Q Consensus       217 ~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~  284 (321)
                      ....+          ..|.+||..+++.+..+.... ....   ....+||+  +++++..|+.|+|||+++++.+..+.
T Consensus       265 ~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~-~~~~---~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         265 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDS---INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECE---EEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCC-CEEE---EEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            76543          369999999999888775432 1222   33346776  56778889999999999999999998


Q ss_pred             CCCCCeEEEEecCC
Q 020798          285 GHTDPVISVASHPT  298 (321)
Q Consensus       285 ~h~~~v~~~~~~p~  298 (321)
                      ++...-..+.+.+.
T Consensus       341 ~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         341 QLGHGPQVITTADM  354 (355)
T ss_dssp             CCCSSCCEEECCCC
T ss_pred             CcCCCccEEEeCCC
Confidence            76554455555443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.78  E-value=1.9e-15  Score=125.28  Aligned_cols=265  Identities=10%  Similarity=-0.004  Sum_probs=172.7

Q ss_pred             eeeeccCCcccEEEEEECCCCCEEEEec----------CCceEEEeeccccCCCCCCCCCccccccccccc-------EE
Q 020798           15 LTQTLNGHLRAISSVKFSHDGRLLASSS----------ADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQG-------VS   77 (321)
Q Consensus        15 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~-------i~   77 (321)
                      +...+.++...  .++|+|||++|++++          .++.+.+||.....        .+..+..+...       ..
T Consensus        59 ~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~--------~~~~~~~~~~~~~~~~~~~~  128 (373)
T d2madh_          59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL--------PIADIELPDAPRFDVGPYSW  128 (373)
T ss_pred             EEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCc--------EEEEEecCCcceeEeccCCC
Confidence            44445555433  689999999998874          45789999876532        12222222211       24


Q ss_pred             EEEECCCCCEEEEE--eCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCE-EEEeeCCCcEEEEecCCCEEEEEEe
Q 020798           78 DLVFSSDSRFLVSA--SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNM-IVSGAFDETVRIWDVKTGKCLKVLP  154 (321)
Q Consensus        78 ~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~  154 (321)
                      .+.|+++++.++..  ..++.+.+|+....+....    .....++.++|+++. +++.+.|+.+.+|+...++......
T Consensus       129 ~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         129 MNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV  204 (373)
T ss_pred             cEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence            57889998876554  3456788898877664433    334567889999875 4678899999999998877665443


Q ss_pred             CCC------CCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc-----------CCCCCeEEEEEccCCCEEE-
Q 020798          155 AHS------DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID-----------DENPPVSFVKFSPNGKFIL-  216 (321)
Q Consensus       155 ~~~------~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~l~-  216 (321)
                      .+.      .......+.+++ .++..+.++.+.+|+............           ........+++++++..++ 
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  283 (373)
T d2madh_         205 GAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL  283 (373)
T ss_pred             eeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEE
Confidence            221      112344555554 455667888899998876543211100           0011223456666665543 


Q ss_pred             ---------EEecCCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe--EEEEeCCCCeEEEEEcccceEEEEecC
Q 020798          217 ---------VGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK--YIVSGSEDSCVYLWELQSRKVVQKLEG  285 (321)
Q Consensus       217 ---------~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~  285 (321)
                               ....++.+.+||..+++.+..+.... ....   ....+||+  ++++++.|+.|++||+.+++.+..+..
T Consensus       284 ~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~-~~~~---~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~  359 (373)
T d2madh_         284 LTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDA---ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE  359 (373)
T ss_pred             ecCCCceEEeecCCCeEEEEECCCCcEEEEecCCC-CeeE---EEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECC
Confidence                     44556789999999999888775432 2222   23346776  457889999999999999999999998


Q ss_pred             CCCCeEEEEecCC
Q 020798          286 HTDPVISVASHPT  298 (321)
Q Consensus       286 h~~~v~~~~~~p~  298 (321)
                      +...-..+++.++
T Consensus       360 ~g~~P~~l~~~~~  372 (373)
T d2madh_         360 LGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCCcEEEEecC
Confidence            8777777776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=4.2e-16  Score=129.32  Aligned_cols=280  Identities=8%  Similarity=-0.071  Sum_probs=168.9

Q ss_pred             CcccEEEEEECCCCCEE---EEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe------
Q 020798           22 HLRAISSVKFSHDGRLL---ASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS------   92 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l---~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~------   92 (321)
                      +.+....++..++++..   +....++...+|-+..      .....+.....+..  ..++|+|||+.|++.+      
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~------~~~~~~~~~~~~~~--~~~a~spDg~~i~~~~~~~~~~   89 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCA------GCGVTLGHSLGAFL--SLAVAGHSGSDFALASTSFARS   89 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEET------TTTEEEEEEEECTT--CEEEECTTSSCEEEEEEEETTT
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeC------CCCcEEEEEeCCCC--CcceECCCCCEEEEEcccCccc
Confidence            34444455678888753   3345566655553321      22233444444443  3589999999988754      


Q ss_pred             ----CCCcEEEEecCCcceeeeeecCcc-------cEEEEEECCCCCEEEEee-CCCcEEEEecCCCEEEEEEeCCCCCe
Q 020798           93 ----DDKTIRLWDVPTATCLKTLIGHTN-------YVFCVNFNPQSNMIVSGA-FDETVRIWDVKTGKCLKVLPAHSDPV  160 (321)
Q Consensus        93 ----~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~v  160 (321)
                          .|+.|.+||..+++....+..+..       ....++|+|||++++.+. .++.+.+||+.+++....+..+....
T Consensus        90 ~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~  169 (368)
T d1mdah_          90 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH  169 (368)
T ss_dssp             TSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC
T ss_pred             cccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce
Confidence                367799999999987766543321       223588999999987765 57999999999999888877655432


Q ss_pred             eEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee-----ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEE
Q 020798          161 TAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL-----IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKIL  235 (321)
Q Consensus       161 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~  235 (321)
                      ..   ......++..+.||.+.++++.........     .......+....+.+++..+..  ..+.+.+++.......
T Consensus       170 ~~---~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~  244 (368)
T d1mdah_         170 IH---PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGAT  244 (368)
T ss_dssp             CE---EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCE
T ss_pred             Ec---cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceE
Confidence            11   122345666677888777776544322111     1112222345667777765543  3455667776555433


Q ss_pred             EEEec--cCC----------ceeEEEeEEEecCCeEEEEeC---------CCCeEEEEEcccceEEEEecCCCCCeEEEE
Q 020798          236 KTYTG--HTN----------SKYCISSTFSVTNGKYIVSGS---------EDSCVYLWELQSRKVVQKLEGHTDPVISVA  294 (321)
Q Consensus       236 ~~~~~--~~~----------~~~~~~~~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  294 (321)
                      .....  ...          ....+  .+ .+++..++...         ....|.+||..+++.+..+.. ...+.+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~--a~-~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a  320 (368)
T d1mdah_         245 MKAAIDGNESGRKADNFRSAGFQMV--AK-LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAII  320 (368)
T ss_dssp             EECCCCSSCTHHHHTTEEECSSSCE--EE-ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEE
T ss_pred             EEeecccccceeeeeeecCCCceeE--EE-cCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEE
Confidence            22211  000          00011  12 23444443321         123589999999998877763 45788999


Q ss_pred             ecCCCce--EEEEeecCCccEEEccccc
Q 020798          295 SHPTENI--IASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       295 ~~p~~~~--l~s~~~d~~~~i~iw~~~~  320 (321)
                      |+|||+.  +++++  .++.|++||.+.
T Consensus       321 ~spDG~~~ly~s~~--~~~~v~v~D~~t  346 (368)
T d1mdah_         321 AAQDGASDNYANSA--GTEVLDIYDAAS  346 (368)
T ss_dssp             ECCSSSCEEEEEET--TTTEEEEEESSS
T ss_pred             ECCCCCEEEEEEeC--CCCeEEEEECCC
Confidence            9999974  34443  568999999753

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.66  E-value=2.3e-14  Score=122.57  Aligned_cols=109  Identities=13%  Similarity=0.119  Sum_probs=81.0

Q ss_pred             eccCCcccEEEEEECCCCCEEEEecC---------CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEE
Q 020798           18 TLNGHLRAISSVKFSHDGRLLASSSA---------DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFL   88 (321)
Q Consensus        18 ~~~~h~~~v~~~~~s~~g~~l~~~~~---------d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l   88 (321)
                      .+..|...|.++.|||||++||.++.         ++.+.+|++...         .+..+..|...+..+.|||||+.+
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~---------~~~~l~~~~~~~~~~~~SPDG~~i  126 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR---------QLITEERIPNNTQWVTWSPVGHKL  126 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---------EECCSSCCCTTEEEEEECSSTTCE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC---------cccccccCCccccccccccCccee
Confidence            45667788999999999999998753         466778887642         234466778889999999999999


Q ss_pred             EEEeCCCcEEEEecCCcceeeeeecC------------------cccEEEEEECCCCCEEEEeeCC
Q 020798           89 VSASDDKTIRLWDVPTATCLKTLIGH------------------TNYVFCVNFNPQSNMIVSGAFD  136 (321)
Q Consensus        89 ~~~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~d  136 (321)
                      |.. .++.+.+|+..+++.......+                  ......+.|+|||+.|+....|
T Consensus       127 a~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         127 AYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             eEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            985 5678999999887654432211                  1123457799999999887654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.63  E-value=1.5e-14  Score=120.10  Aligned_cols=231  Identities=13%  Similarity=0.112  Sum_probs=148.8

Q ss_pred             ccccEEEEEECCCCCEEEEE-eCCCcEEEEecCCcceeeeee-cCcccEEEEEECCCCCE--EEEeeCCC----------
Q 020798           72 HEQGVSDLVFSSDSRFLVSA-SDDKTIRLWDVPTATCLKTLI-GHTNYVFCVNFNPQSNM--IVSGAFDE----------  137 (321)
Q Consensus        72 h~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--l~~~~~dg----------  137 (321)
                      |........++|||++|++. ..++.|.++|+++.++...+. .+......++++|+++.  ++..+.+.          
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            44445556667899988655 567889999999998766553 35667889999999984  44333321          


Q ss_pred             -------cEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC-------------------------------
Q 020798          138 -------TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG-------------------------------  179 (321)
Q Consensus       138 -------~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------------------------------  179 (321)
                             .+..+|..+.+....+... .....++++|+|+++++.+.+.                               
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~d  228 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKA  228 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHT
T ss_pred             ccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecC
Confidence                   2345777777666655543 3467899999999888776442                               


Q ss_pred             ----------eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEE-EecCCeEEEEeCCCCcE--------EEEEec
Q 020798          180 ----------LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILV-GTLDNTLRLWNYSTGKI--------LKTYTG  240 (321)
Q Consensus       180 ----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~~~d~~i~i~d~~~~~~--------~~~~~~  240 (321)
                                .+.+++....+.+..+...  .....+.++|||+++++ +..++++.+||+.+.+.        ...+.+
T Consensus       229 Gk~~~v~~~~v~vvd~~~~~~v~~~IPvg--ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         229 GNFKTIGDSKVPVVDGRGESEFTRYIPVP--KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             TCCBCCTTCCCCEEECSSSCSSEEEECCB--SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             CCEEEeCCCCcEEEEcccCCceEEEEeCC--CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence                      2223332222223332221  22356899999998866 45789999999865211        000111


Q ss_pred             cCC-ceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc----------eEEEEe-----cCCCCCeEEEEecCCCceEEE
Q 020798          241 HTN-SKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR----------KVVQKL-----EGHTDPVISVASHPTENIIAS  304 (321)
Q Consensus       241 ~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~-----~~h~~~v~~~~~~p~~~~l~s  304 (321)
                      +.. ....+-.. +.++|..+.+...|..|..|++...          ..+.++     .+|...+.+.+++|||++|++
T Consensus       307 ~~~~glgplh~~-fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s  385 (441)
T d1qnia2         307 EPELGLGPLHTT-FDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV  385 (441)
T ss_dssp             CCBCCSCEEEEE-ECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEE
T ss_pred             ecccccCcccce-ecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEe
Confidence            110 01112222 3467888888999999999998421          234444     477778888999999999999


Q ss_pred             Ee
Q 020798          305 GA  306 (321)
Q Consensus       305 ~~  306 (321)
                      ++
T Consensus       386 ~~  387 (441)
T d1qnia2         386 LS  387 (441)
T ss_dssp             EE
T ss_pred             cC
Confidence            93

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=1.2e-13  Score=114.21  Aligned_cols=259  Identities=12%  Similarity=0.068  Sum_probs=156.0

Q ss_pred             eeccCCcccEEEEEECCCCCEEEEec----------CCceEEEeeccccCCCCCCCCCcccccccc-------cccEEEE
Q 020798           17 QTLNGHLRAISSVKFSHDGRLLASSS----------ADKTLLTYSLSSISNSDSTPPSPLQKFTGH-------EQGVSDL   79 (321)
Q Consensus        17 ~~~~~h~~~v~~~~~s~~g~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~i~~~   79 (321)
                      ..+.++...  .++|+|||+.|++.+          .|+.|.+||.....        ++..+..+       ......+
T Consensus        60 ~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~--------~~~~i~~p~~~~~~~g~~p~~~  129 (368)
T d1mdah_          60 GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--------PIADIELPDAPRFSVGPRVHII  129 (368)
T ss_dssp             EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--------EEEEEEETTSCSCCBSCCTTSE
T ss_pred             EEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc--------EeeeecCCccceecccCCccce
Confidence            334444333  489999999888753          47789999876432        11211111       1123468


Q ss_pred             EECCCCCEEEEEe-CCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEE-----
Q 020798           80 VFSSDSRFLVSAS-DDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVL-----  153 (321)
Q Consensus        80 ~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-----  153 (321)
                      +|+|||++|+++. .++.+.+||+.+++....+..+.....   .......++..+.||.+.++++.........     
T Consensus       130 a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~  206 (368)
T d1mdah_         130 GNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             EECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence            9999999998775 578999999999988776654443211   1112345566677788777776544322111     


Q ss_pred             -eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccC-----------CCCCeEEEEEccCCCEEEEEecC
Q 020798          154 -PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDD-----------ENPPVSFVKFSPNGKFILVGTLD  221 (321)
Q Consensus       154 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~l~~~~~d  221 (321)
                       ..+...+....+.+++..+...  .+.+.+++.............           .......+++++++..+++...+
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~  284 (368)
T d1mdah_         207 TGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE  284 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             ccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecC
Confidence             1223344566777777555433  345556665543322111000           00112347889988887665422


Q ss_pred             ---------CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCe--EEEEeCCCCeEEEEEcccceEEEEecCCCCCe
Q 020798          222 ---------NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGK--YIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV  290 (321)
Q Consensus       222 ---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v  290 (321)
                               ..|.+||..+++.+..+.... .   +......+||+  .++++..++.|++||..+++.+..++....| 
T Consensus       285 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~-~---~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P-  359 (368)
T d1mdah_         285 HSRSCLAAAENTSSVTASVGQTSGPISNGH-D---SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-  359 (368)
T ss_dssp             CSSCTTSCEEEEEEEESSSCCEEECCEEEE-E---ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC-
T ss_pred             CCceeecCCceEEEEECCCCcEeEEecCCC-c---eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCC-
Confidence                     259999999998887664321 1   22233346775  4567788999999999999999888765443 


Q ss_pred             EEEEe
Q 020798          291 ISVAS  295 (321)
Q Consensus       291 ~~~~~  295 (321)
                      ..|++
T Consensus       360 ~~l~~  364 (368)
T d1mdah_         360 ESLSV  364 (368)
T ss_dssp             CEEEC
T ss_pred             CEEEE
Confidence            44443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.51  E-value=9.9e-13  Score=112.29  Aligned_cols=144  Identities=13%  Similarity=0.208  Sum_probs=106.8

Q ss_pred             EEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC---------CCcEE
Q 020798           28 SVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD---------DKTIR   98 (321)
Q Consensus        28 ~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~---------d~~i~   98 (321)
                      .+.|.++++++..  .++.+.+|+.........   ..-..+..|...|.++.|||||++|+.++.         ++.+.
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVF---LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEE---ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEE---EchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            4789999988875  477899998865432110   011245567788999999999999988753         46788


Q ss_pred             EEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC------------------CCCe
Q 020798           99 LWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH------------------SDPV  160 (321)
Q Consensus        99 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------------------~~~v  160 (321)
                      +||+.+++ ...+..+...+....|+|||+.++.. .++.+++|+..+++..+....+                  ....
T Consensus        96 l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          96 IYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             EEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            99999887 45577788889999999999999885 4678999999887655432211                  1234


Q ss_pred             eEEEEccCCCEEEEEeCC
Q 020798          161 TAVDFNRDGTMIVTSSYD  178 (321)
Q Consensus       161 ~~~~~~~~~~~l~~~~~d  178 (321)
                      ..+.|+|||+.++....|
T Consensus       174 ~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         174 SALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             BCEEECTTSSEEEEEEEE
T ss_pred             cccEECCCCCccceeEec
Confidence            568899999999887654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.45  E-value=4.2e-11  Score=99.18  Aligned_cols=224  Identities=12%  Similarity=0.097  Sum_probs=144.8

Q ss_pred             EEEEeCCCcEEEEecCCcceeeeeec------------------------------CcccEEEEEECCCCCEEEEe-eCC
Q 020798           88 LVSASDDKTIRLWDVPTATCLKTLIG------------------------------HTNYVFCVNFNPQSNMIVSG-AFD  136 (321)
Q Consensus        88 l~~~~~d~~i~iwd~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~-~~d  136 (321)
                      +++++.+|+|.+|++.+.+.++.+..                              |..........|||++|+.+ ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56788899999999988876665421                              22334455567899988655 577


Q ss_pred             CcEEEEecCCCEEEEEEeC-CCCCeeEEEEccCCCE--EEEEeCCC-----------------eEEEEeCCCCceeeeec
Q 020798          137 ETVRIWDVKTGKCLKVLPA-HSDPVTAVDFNRDGTM--IVTSSYDG-----------------LCRIWDASTGHCMKTLI  196 (321)
Q Consensus       137 g~i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~~~~~dg-----------------~i~~~d~~~~~~~~~~~  196 (321)
                      ..|.++|+++++....+.. +......++|+|+++.  ++..+.+.                 .+..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            8999999999988776653 4567889999999884  33333332                 23456777665555443


Q ss_pred             cCCCCCeEEEEEccCCCEEEEEecC-----------------------------------------CeEEEEeCCCCcEE
Q 020798          197 DDENPPVSFVKFSPNGKFILVGTLD-----------------------------------------NTLRLWNYSTGKIL  235 (321)
Q Consensus       197 ~~~~~~~~~~~~~~~g~~l~~~~~d-----------------------------------------~~i~i~d~~~~~~~  235 (321)
                      ...  ....+.++|+|+++++++.+                                         +.+.+++....+.+
T Consensus       174 v~~--~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         174 VDG--NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             ESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             cCC--CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            332  35678999999998887643                                         23334444444455


Q ss_pred             EEEeccCCceeEEEeEEEecCCeEE-EEeCCCCeEEEEEcccceEE--------EEecCCC---CCeEEEEecCCCceEE
Q 020798          236 KTYTGHTNSKYCISSTFSVTNGKYI-VSGSEDSCVYLWELQSRKVV--------QKLEGHT---DPVISVASHPTENIIA  303 (321)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~--------~~~~~h~---~~v~~~~~~p~~~~l~  303 (321)
                      ..+.....+. .+   ...+||+++ +++..+++|.|||+.+.+..        ..+.++.   -.....+|.++|+.+.
T Consensus       252 ~~IPvgksPh-Gv---~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yt  327 (441)
T d1qnia2         252 RYIPVPKNPH-GL---NTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYT  327 (441)
T ss_dssp             EEECCBSSCC-CE---EECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEE
T ss_pred             EEEeCCCCcc-Cc---eECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEE
Confidence            5554443332 22   234788876 56788999999998653210        0111111   1124468999998888


Q ss_pred             EEeecCCccEEEcccc
Q 020798          304 SGALDNDRTVKIWTQE  319 (321)
Q Consensus       304 s~~~d~~~~i~iw~~~  319 (321)
                      +.+.|  ..|..|+++
T Consensus       328 s~~~d--s~v~kw~~~  341 (441)
T d1qnia2         328 TLFID--SQVCKWNIA  341 (441)
T ss_dssp             EETTT--TEEEEEEHH
T ss_pred             ccccc--ceEEEeccc
Confidence            87754  789999975

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.36  E-value=3.9e-09  Score=84.55  Aligned_cols=240  Identities=9%  Similarity=0.058  Sum_probs=146.2

Q ss_pred             ccEEEEEECCCCCEEEEEeC-------CCcEEEEecCCcceeeeeec----CcccEEEEEECCCCCEEEEeeCCCcEEEE
Q 020798           74 QGVSDLVFSSDSRFLVSASD-------DKTIRLWDVPTATCLKTLIG----HTNYVFCVNFNPQSNMIVSGAFDETVRIW  142 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~~w  142 (321)
                      .....++|.++|+++++...       +++|..||..++........    .......+++.++++.++++.....|..+
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34567899999997776432       46788899887754322211    12235679999999988888777778888


Q ss_pred             ecCCCEEEEEEeCCCC----CeeEEEEccCCCEEEEEeC---------------CCeEEEEeCCCCceeeeeccCCCCCe
Q 020798          143 DVKTGKCLKVLPAHSD----PVTAVDFNRDGTMIVTSSY---------------DGLCRIWDASTGHCMKTLIDDENPPV  203 (321)
Q Consensus       143 d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~---------------dg~i~~~d~~~~~~~~~~~~~~~~~~  203 (321)
                      +...+...........    ....+++.++|++.++-..               .|.+..++.. ++... +... ....
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~-~~~~-~~~p  174 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTA-FQFP  174 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEE-ESSE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeE-eeCC-ccee
Confidence            8765543322111111    2577999999988776422               2344444433 22221 1111 1234


Q ss_pred             EEEEEccCCC----EE-EEEecCCeEEEEeCCCCcEEEE---EeccCC-ceeEEEeEEEecCCeEEEEeCCCCeEEEEEc
Q 020798          204 SFVKFSPNGK----FI-LVGTLDNTLRLWNYSTGKILKT---YTGHTN-SKYCISSTFSVTNGKYIVSGSEDSCVYLWEL  274 (321)
Q Consensus       204 ~~~~~~~~g~----~l-~~~~~d~~i~i~d~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (321)
                      +.++|+|++.    .| ++-+..+.|..||+.....+..   +..... ............+|+++++....+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            6788988764    34 4445678899998754333221   111111 1111222334467888777777899999998


Q ss_pred             ccceEEEEecCCCCCeEEEEecCCCc-eEEEEeecCCccEEEccc
Q 020798          275 QSRKVVQKLEGHTDPVISVASHPTEN-IIASGALDNDRTVKIWTQ  318 (321)
Q Consensus       275 ~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~d~~~~i~iw~~  318 (321)
                      ..++.+..+..+.....+++|.|+++ ++++.+  .+++|.-.+.
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~--~~g~i~~~~~  297 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH--ENNAVWKFEW  297 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEET--TTTEEEEEEC
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC--CCCcEEEEEC
Confidence            87777666666666789999999986 455544  3466666554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=1.2e-08  Score=80.30  Aligned_cols=236  Identities=14%  Similarity=0.232  Sum_probs=153.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeec------CcccEEEEEECCCC-CEEEE-eeCCCcEEEEecCC
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIG------HTNYVFCVNFNPQS-NMIVS-GAFDETVRIWDVKT  146 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~-~~l~~-~~~dg~i~~wd~~~  146 (321)
                      ....++++++++.+++-..++.|++||.+ ++.+..+..      .......+++.++. ..+++ .+.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            35789999999988887778899999965 444443321      11123445555543 34433 3455677777754 


Q ss_pred             CEEEEEEe-CCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec-cCCCCCeEEEEEccCCCEEEEEecCCeE
Q 020798          147 GKCLKVLP-AHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI-DDENPPVSFVKFSPNGKFILVGTLDNTL  224 (321)
Q Consensus       147 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~d~~i  224 (321)
                      +.....+. ........+++.+++.++++....+.+.+++... +.+..+. .........+++.++|+.+++....+.|
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccce
Confidence            54444443 2345567899999999888888888888888653 4444432 2233456778899999888888888999


Q ss_pred             EEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeC-CCCeEEEEEcccceEEEEecCC--CCCeEEEEecCCCce
Q 020798          225 RLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS-EDSCVYLWELQSRKVVQKLEGH--TDPVISVASHPTENI  301 (321)
Q Consensus       225 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~  301 (321)
                      ++||. +++.+..+.......... .....++|+.+++-. .++.|.+|+. +++.+..+...  ......|++.|+|.+
T Consensus       181 ~~~d~-~G~~~~~~g~~g~~~~P~-giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l  257 (279)
T d1q7fa_         181 KVFNY-EGQYLRQIGGEGITNYPI-GVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV  257 (279)
T ss_dssp             EEEET-TCCEEEEESCTTTSCSEE-EEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             eeeec-CCceeeeecccccccCCc-ccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence            99995 566777664221111112 223346788777654 3457999984 57766665432  235689999999987


Q ss_pred             EEEEeecCCccEEEcccc
Q 020798          302 IASGALDNDRTVKIWTQE  319 (321)
Q Consensus       302 l~s~~~d~~~~i~iw~~~  319 (321)
                      +++.   .+.+|++|...
T Consensus       258 ~V~~---~n~~v~~fr~~  272 (279)
T d1q7fa_         258 VLAS---KDYRLYIYRYV  272 (279)
T ss_dssp             EEEE---TTTEEEEEECS
T ss_pred             EEEe---CCCeEEEEEee
Confidence            6653   45789999865

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=3.7e-09  Score=83.26  Aligned_cols=245  Identities=11%  Similarity=0.191  Sum_probs=153.9

Q ss_pred             ccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC-CCEEEE-EeCCCcEEEEe
Q 020798           24 RAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD-SRFLVS-ASDDKTIRLWD  101 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~~-~~~d~~i~iwd  101 (321)
                      .....++++|+|+++++-..+..|++|+............   ..-.+.......+++.++ +..+++ .+.++.|..++
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGEC---GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCB---SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEeccc---CCCcccccccccccccccccccceeccCCcccccccc
Confidence            3467899999999888877778888887543211000000   000111123445555544 344443 34455777777


Q ss_pred             cCCcceeeee-ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe--CCCCCeeEEEEccCCCEEEEEeCC
Q 020798          102 VPTATCLKTL-IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP--AHSDPVTAVDFNRDGTMIVTSSYD  178 (321)
Q Consensus       102 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d  178 (321)
                      .. +.....+ .........+++.++++.+++....+.+.+++.. ++.+..+.  .+......+++.++++.+++....
T Consensus       100 ~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_         100 QY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             TT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             cc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccc
Confidence            54 3333333 2234556789999999988887777888888854 55555542  344567789999999888888889


Q ss_pred             CeEEEEeCCCCceeeeecc-CCCCCeEEEEEccCCCEEEEEec-CCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecC
Q 020798          179 GLCRIWDASTGHCMKTLID-DENPPVSFVKFSPNGKFILVGTL-DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       179 g~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (321)
                      +.|++||... +.+..+.. ........++++++|+.+++-.. ++.|.+|+ .+++.+..+........... ....++
T Consensus       178 ~~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~-vav~~d  254 (279)
T d1q7fa_         178 HCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFD-VALMDD  254 (279)
T ss_dssp             TEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEE-EEEETT
T ss_pred             cceeeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeE-EEEeCC
Confidence            9999999764 44444422 12334678999999997766443 45799998 56887777654332212222 223467


Q ss_pred             CeEEEEeCCCCeEEEEEcccc
Q 020798          257 GKYIVSGSEDSCVYLWELQSR  277 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~~~~  277 (321)
                      |.++++ +.+..|++|.....
T Consensus       255 G~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         255 GSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             TEEEEE-ETTTEEEEEECSCC
T ss_pred             CcEEEE-eCCCeEEEEEeeee
Confidence            876554 57889999998654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.35  E-value=1e-09  Score=85.62  Aligned_cols=237  Identities=8%  Similarity=-0.019  Sum_probs=144.3

Q ss_pred             ccEEEEEECCCCCEEEEE-eCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEE
Q 020798           74 QGVSDLVFSSDSRFLVSA-SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKV  152 (321)
Q Consensus        74 ~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  152 (321)
                      .....+++.++|+..++. +..+.+..++............-......++++++++.+++....+.+++++..+......
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            456899999999966654 4556777776554432222111122346788999998877766666676665544443322


Q ss_pred             EeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 020798          153 LPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG  232 (321)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~  232 (321)
                      .. .......+++.++++++++-..+..+..++........... ........++++++|+.+++...++.|..+|....
T Consensus        94 ~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          94 FD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             ee-eeeecccccccccceeEeeccccccccccccccceeeeeee-cccCCcceeeecCCCCEeeeccccccccccccccc
Confidence            22 22456889999999888777677777777765433222111 11233467899999998887778889999997654


Q ss_pred             cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecCCcc
Q 020798          233 KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDNDRT  312 (321)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~  312 (321)
                      ...............   ....++|.++++....+.|..++.............-....+++++++++++++-.  ++++
T Consensus       172 ~~~~~~~~~~~~p~g---i~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~--~~~r  246 (260)
T d1rwia_         172 NQVVLPFTDITAPWG---IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR--GNDR  246 (260)
T ss_dssp             CEEECCCSSCCSEEE---EEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEG--GGTE
T ss_pred             eeeeeeccccCCCcc---ceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEEC--CCCE
Confidence            433221122222222   22346788888888888888887654432111122234568999999998888744  2345


Q ss_pred             EEEcc
Q 020798          313 VKIWT  317 (321)
Q Consensus       313 i~iw~  317 (321)
                      |+..+
T Consensus       247 I~~i~  251 (260)
T d1rwia_         247 VVKLT  251 (260)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            65444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.33  E-value=1.7e-09  Score=88.71  Aligned_cols=244  Identities=11%  Similarity=0.128  Sum_probs=139.6

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeee--cCcccEEEEEECCCCCE--EEEee-CCCcEEEEecCC---
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI--GHTNYVFCVNFNPQSNM--IVSGA-FDETVRIWDVKT---  146 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~--l~~~~-~dg~i~~wd~~~---  146 (321)
                      .+.-|+|++++++|+++.. +.+..|.+.....+....  ........+.++++++.  ++++. ..+.+..+.+..   
T Consensus        41 ~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~  119 (365)
T d1jofa_          41 PISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             CCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCC
Confidence            3556999999999987754 567778765432222111  11222345667788774  33332 235555544321   


Q ss_pred             ----------CEE---EEEE-eCCCCCeeEEEEccCCCEEEEEeC-CCeEEEEeCCC-Ccee--eee-ccCCCCCeEEEE
Q 020798          147 ----------GKC---LKVL-PAHSDPVTAVDFNRDGTMIVTSSY-DGLCRIWDAST-GHCM--KTL-IDDENPPVSFVK  207 (321)
Q Consensus       147 ----------~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~-~~~~--~~~-~~~~~~~~~~~~  207 (321)
                                +..   .... ......+.++.|+|+|++++++.. ...|.+|+... +...  ... ..........++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~  199 (365)
T d1jofa_         120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA  199 (365)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred             cceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEE
Confidence                      110   1111 112234689999999998877764 45788887543 2221  111 122345678899


Q ss_pred             EccCCCEEEEEe-cCCeEEEEeCCCCcEE--EE---Eecc-----------CCceeEEEeEEEecCCeEEEEeCC-----
Q 020798          208 FSPNGKFILVGT-LDNTLRLWNYSTGKIL--KT---YTGH-----------TNSKYCISSTFSVTNGKYIVSGSE-----  265 (321)
Q Consensus       208 ~~~~g~~l~~~~-~d~~i~i~d~~~~~~~--~~---~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~-----  265 (321)
                      |+|+++++.+.. .+++|.+|++..++..  ..   ...-           .............++|++|+++..     
T Consensus       200 f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~  279 (365)
T d1jofa_         200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE  279 (365)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred             ECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCc
Confidence            999999887665 5789999998665422  21   1100           000111222344588998877632     


Q ss_pred             -CCeEEEEEcccceEEE------EecCCCCCeEEEEecC-CCceEEEEeecCCccEEEccccc
Q 020798          266 -DSCVYLWELQSRKVVQ------KLEGHTDPVISVASHP-TENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       266 -dg~i~vwd~~~~~~~~------~~~~h~~~v~~~~~~p-~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                       .+.|..|++.....+.      ........-.+++++| +|++|+.+..+ ++.|.+|+...
T Consensus       280 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~-s~~v~v~~~~~  341 (365)
T d1jofa_         280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-EGWLEIYRWKD  341 (365)
T ss_dssp             SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-SCEEEEEEEET
T ss_pred             cceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC-CCeEEEEEEeC
Confidence             2347778775432111      1122233457899998 78988887654 57899998653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.30  E-value=8.9e-09  Score=82.02  Aligned_cols=216  Identities=11%  Similarity=0.105  Sum_probs=139.8

Q ss_pred             ccCCcceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCE
Q 020798            8 ESFRPYTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRF   87 (321)
Q Consensus         8 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~   87 (321)
                      -.+.|.+....+... ..+..++++|||+++++...++.|..++...          ....+......+.+++|+++|++
T Consensus        13 ~~~~~~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g----------~~~~~~~~~~~~~gla~~~dG~l   81 (302)
T d2p4oa1          13 IELAPAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG----------NQQIHATVEGKVSGLAFTSNGDL   81 (302)
T ss_dssp             BCCCCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC----------CEEEEEECSSEEEEEEECTTSCE
T ss_pred             ccCCcccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC----------CEEEEEcCCCCcceEEEcCCCCe
Confidence            344455544444322 2477899999999999999899887775322          12334445677899999999999


Q ss_pred             EEEEeCCCcEEEEecCCcce-eeee--ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeC--------C
Q 020798           88 LVSASDDKTIRLWDVPTATC-LKTL--IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPA--------H  156 (321)
Q Consensus        88 l~~~~~d~~i~iwd~~~~~~-~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--------~  156 (321)
                      +++...++.+..++...... ...+  .........+++.++++++++.+.++.+..+|...+........        +
T Consensus        82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  161 (302)
T d2p4oa1          82 VATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSE  161 (302)
T ss_dssp             EEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred             EEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeecc
Confidence            88888888888887644321 1111  12345578899999999888888889999999887754332211        1


Q ss_pred             C--CCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeee-ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCc
Q 020798          157 S--DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTL-IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGK  233 (321)
Q Consensus       157 ~--~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~  233 (321)
                      .  .....+.+.. +.++++.+..+.+..++.......... ..........++++++|+++++...++.|..++.. ++
T Consensus       162 ~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~  239 (302)
T d2p4oa1         162 SVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS  239 (302)
T ss_dssp             CCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC
T ss_pred             CcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CC
Confidence            1  1234455543 335556677888888887643222111 00112234568999999988887788999999865 44


Q ss_pred             EEE
Q 020798          234 ILK  236 (321)
Q Consensus       234 ~~~  236 (321)
                      ...
T Consensus       240 ~~~  242 (302)
T d2p4oa1         240 TTI  242 (302)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            333

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=4.2e-09  Score=82.03  Aligned_cols=198  Identities=11%  Similarity=0.072  Sum_probs=125.4

Q ss_pred             cEEEEEECCCCCEEEE-ecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 020798           25 AISSVKFSHDGRLLAS-SSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVP  103 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~-~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  103 (321)
                      .-..++++++|++.++ .+..+.+..++......       ......+ ......++++++++++++....+.+++++-.
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~-------~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~   86 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-------TVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS   86 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CE-------EECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE-------EEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeec
Confidence            4578999999996555 45556666664432111       1111111 1234678899999987777766667766655


Q ss_pred             CcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEE
Q 020798          104 TATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRI  183 (321)
Q Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  183 (321)
                      +........ .......+++.++++.+++-.....+..++...................+++.++++.+++...++.|..
T Consensus        87 ~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~  165 (260)
T d1rwia_          87 NNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK  165 (260)
T ss_dssp             SCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEE
T ss_pred             cceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccc
Confidence            544333322 2345678999999988777666667777776543322211122234578999999998888888889999


Q ss_pred             EeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 020798          184 WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTG  232 (321)
Q Consensus       184 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~  232 (321)
                      +|........ ...........++++++|+++++....+.|..++....
T Consensus       166 ~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         166 LEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             ECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             cccccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            9987543322 22222334578999999988777777788888876543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=4.1e-08  Score=76.45  Aligned_cols=221  Identities=14%  Similarity=0.128  Sum_probs=131.0

Q ss_pred             ccccccccEEEEEECCCCCEEEEEeCCC---cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-CCc--EEE
Q 020798           68 KFTGHEQGVSDLVFSSDSRFLVSASDDK---TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-DET--VRI  141 (321)
Q Consensus        68 ~~~~h~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~~  141 (321)
                      .+..+...+...+|||||+.||......   .+.+.+...+.. ..+..+........|+|++..++.... ++.  +..
T Consensus        33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~  111 (269)
T d2hqsa1          33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  111 (269)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceee
Confidence            3344566788899999999998664443   366666665553 344556777788999999998876543 332  222


Q ss_pred             EecCCCEEEEEEeCCCCCeeEEEEccCCCEEEE-EeCCC--eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE
Q 020798          142 WDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT-SSYDG--LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG  218 (321)
Q Consensus       142 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  218 (321)
                      +........ .............+++++..+.. ...++  .+.+.++..+.....  ...........++|+++.++..
T Consensus       112 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~~~~~  188 (269)
T d2hqsa1         112 MDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI--TWEGSQNQDADVSSDGKFMVMV  188 (269)
T ss_dssp             EETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC--CCSSSEEEEEEECTTSSEEEEE
T ss_pred             cccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccceee--ecccccccccccccccceeEEE
Confidence            332222222 22233344455667777765544 44455  455556655432222  2223445667899999998887


Q ss_pred             ecCC---eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeC---CCCeEEEEEcccceEEEEecCCCCCeEE
Q 020798          219 TLDN---TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGS---EDSCVYLWELQSRKVVQKLEGHTDPVIS  292 (321)
Q Consensus       219 ~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~  292 (321)
                      ..++   .+.+.+...+.. . ..........   ....|||+.|+-.+   ....|+++++..+.. .++......+..
T Consensus       189 ~~~~~~~~i~~~~~~~~~~-~-~~~~~~~~~~---p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~  262 (269)
T d2hqsa1         189 SSNGGQQHIAKQDLATGGV-Q-VLSSTFLDET---PSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKF  262 (269)
T ss_dssp             EECSSCEEEEEEETTTCCE-E-ECCCSSSCEE---EEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEE
T ss_pred             eecCCceeeeEeecccccc-e-EeecCccccc---eEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEe
Confidence            6543   455556555443 2 2222222221   23457898877433   345788999976654 456666677888


Q ss_pred             EEecCC
Q 020798          293 VASHPT  298 (321)
Q Consensus       293 ~~~~p~  298 (321)
                      .+|+|-
T Consensus       263 p~WSP~  268 (269)
T d2hqsa1         263 PAWSPY  268 (269)
T ss_dssp             EEECCC
T ss_pred             EEeCCC
Confidence            999984

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.24  E-value=5.3e-08  Score=78.00  Aligned_cols=229  Identities=10%  Similarity=0.053  Sum_probs=143.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC----CCcEEEEecCCCEEE
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF----DETVRIWDVKTGKCL  150 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~~  150 (321)
                      .+..++|.++|++.++-...+.|..|+..+................++++++|+.+++...    .+.+...+.......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            3567899999997777778899999998877655555555566789999999988776543    233555555544433


Q ss_pred             EEEeC--CCCCeeEEEEccCCCEEEEEeC------CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE-ecC
Q 020798          151 KVLPA--HSDPVTAVDFNRDGTMIVTSSY------DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-TLD  221 (321)
Q Consensus       151 ~~~~~--~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~d  221 (321)
                      .....  .......+++.++|++.++...      .+.+..++..... +..+... -...+.++|+|+++.|.++ +..
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~-~~~pnGia~s~dg~~lyvad~~~  198 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQN-ISVANGIALSTDEKVLWVTETTA  198 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEE-ESSEEEEEECTTSSEEEEEEGGG
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeec-cceeeeeeeccccceEEEecccC
Confidence            32221  1234678999999987665432      2335555544332 2222211 1235679999999876555 567


Q ss_pred             CeEEEEeCCCC-cEEEEE----eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC------CCCCe
Q 020798          222 NTLRLWNYSTG-KILKTY----TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG------HTDPV  290 (321)
Q Consensus       222 ~~i~i~d~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------h~~~v  290 (321)
                      +.|..|++... ......    ...........-.....+|.+.++....+.|.+||- .++.+.++.-      +...+
T Consensus       199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~  277 (319)
T d2dg1a1         199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRS  277 (319)
T ss_dssp             TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBC
T ss_pred             CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCcee
Confidence            89999987532 211111    000011111222334467888888888999999995 6777776643      33467


Q ss_pred             EEEEecCCCceEEEEe
Q 020798          291 ISVASHPTENIIASGA  306 (321)
Q Consensus       291 ~~~~~~p~~~~l~s~~  306 (321)
                      ++++|.|+...+.+.+
T Consensus       278 ~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         278 THPQFIPGTNQLIICS  293 (319)
T ss_dssp             CEEEECTTSCEEEEEE
T ss_pred             eeEEEeCCCCEEEEEc
Confidence            8999999877665554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.22  E-value=9.2e-09  Score=81.93  Aligned_cols=224  Identities=12%  Similarity=0.020  Sum_probs=143.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC--EEEEE
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG--KCLKV  152 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~  152 (321)
                      -+..++++|||+++++...+++|..|+....  ...+......+.+++++++|+.+++...++.+..++....  .....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            3678999999999999988999988885543  2334445677899999999999888888888888876432  22221


Q ss_pred             E-eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc---------CCCCCeEEEEEccCCCEEEEEecCC
Q 020798          153 L-PAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID---------DENPPVSFVKFSPNGKFILVGTLDN  222 (321)
Q Consensus       153 ~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~l~~~~~d~  222 (321)
                      . .........+++.++++++++.+.++.+..+|...+........         ........+.++. +..+++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence            1 12345678899999999888888888998888876543221111         1112344555543 23444556678


Q ss_pred             eEEEEeCCCCcEE---EEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccce-EEEEecCCCCCeEEEEe---
Q 020798          223 TLRLWNYSTGKIL---KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRK-VVQKLEGHTDPVISVAS---  295 (321)
Q Consensus       223 ~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~---  295 (321)
                      .|..++.......   ..+..... ..   ......+|.++++...++.|..++..... .+..........++++|   
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~-pd---gia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~  261 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTN-ID---DFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQT  261 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCC-CS---SEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCS
T ss_pred             eEEeccccccccccccccccCCCC-Cc---ceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCC
Confidence            8888887653221   11111111 11   12334678888888888999888765432 23333333455789999   


Q ss_pred             cCCCceEEEE
Q 020798          296 HPTENIIASG  305 (321)
Q Consensus       296 ~p~~~~l~s~  305 (321)
                      +||++.|..+
T Consensus       262 ~~D~~~Lyvt  271 (302)
T d2p4oa1         262 EGDCTAIYVV  271 (302)
T ss_dssp             TTTTTEEEEE
T ss_pred             CCCCCEEEEE
Confidence            6777766443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.20  E-value=4.4e-09  Score=86.18  Aligned_cols=245  Identities=8%  Similarity=0.089  Sum_probs=135.9

Q ss_pred             CcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccc--cccccEEEEEECCCCCEEE--EEe-CCCc
Q 020798           22 HLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFT--GHEQGVSDLVFSSDSRFLV--SAS-DDKT   96 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~l~--~~~-~d~~   96 (321)
                      ....++-|+|+|++++|++... +.+..|.+....        .+....  ........+.++++++.++  ++. ..++
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~--------~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~  108 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPT--------EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYA  108 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETT--------EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCC--------CeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCE
Confidence            4455667999999999988754 556777654310        011110  1112344567788887433  221 2345


Q ss_pred             EEEEecCCc-------------ce---ee-eeecCcccEEEEEECCCCCEEEEeeC-CCcEEEEecCCC-EEE--EEE--
Q 020798           97 IRLWDVPTA-------------TC---LK-TLIGHTNYVFCVNFNPQSNMIVSGAF-DETVRIWDVKTG-KCL--KVL--  153 (321)
Q Consensus        97 i~iwd~~~~-------------~~---~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~-~~~--~~~--  153 (321)
                      +..+.+...             ..   .. ........+.++.|+|+|+++++++. ...|.+|+.... ...  ...  
T Consensus       109 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~  188 (365)
T d1jofa_         109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA  188 (365)
T ss_dssp             EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred             EEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceee
Confidence            544433211             00   00 01112334789999999998877754 457888876432 221  111  


Q ss_pred             eCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEeCCCCcee--ee---e--cc-----------CCCCCeEEEEEccCCCE
Q 020798          154 PAHSDPVTAVDFNRDGTMIVTSS-YDGLCRIWDASTGHCM--KT---L--ID-----------DENPPVSFVKFSPNGKF  214 (321)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~--~~---~--~~-----------~~~~~~~~~~~~~~g~~  214 (321)
                      .........++|+|+++++.+.. .+++|.+|+...+...  ..   .  ..           ........+.++|+|++
T Consensus       189 ~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  268 (365)
T d1jofa_         189 PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred             cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCE
Confidence            12345678899999999876554 6889999998654321  11   1  00           00112456889999999


Q ss_pred             EEEEec-C-----CeEEEEeCCCCcEEEEE----ecc--CCceeEEEeEEEecCCeEEEEe-CCCCeEEEEEcccc
Q 020798          215 ILVGTL-D-----NTLRLWNYSTGKILKTY----TGH--TNSKYCISSTFSVTNGKYIVSG-SEDSCVYLWELQSR  277 (321)
Q Consensus       215 l~~~~~-d-----~~i~i~d~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~  277 (321)
                      |+++.. +     ..|..|++.....+...    ...  ......+  .+.+.+|++|+++ ..++.|.+|++...
T Consensus       269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i--~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV--SPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE--EECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEE--EecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            988643 2     23777776543222211    111  1111222  2333367866555 67789999987654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.19  E-value=5.1e-08  Score=77.89  Aligned_cols=244  Identities=10%  Similarity=0.076  Sum_probs=143.2

Q ss_pred             ccEEEEEECCCCCEEEEecC-------CceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCc
Q 020798           24 RAISSVKFSHDGRLLASSSA-------DKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKT   96 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~~-------d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~   96 (321)
                      .....++|.|+|++.++...       ++.|..|+..........    .............++|.++++.++++...+.
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~----~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~   93 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC----KPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE----CCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEE----CCccccCCCcceeEEEeCCCCEEEEEECCCe
Confidence            34556799999997766433       345666655432110000    0000011123567999999998888877777


Q ss_pred             EEEEecCCcceeeeeecCc----ccEEEEEECCCCCEEEEeeC---------------CCcEEEEecCCCEEEEEEeCCC
Q 020798           97 IRLWDVPTATCLKTLIGHT----NYVFCVNFNPQSNMIVSGAF---------------DETVRIWDVKTGKCLKVLPAHS  157 (321)
Q Consensus        97 i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~---------------dg~i~~wd~~~~~~~~~~~~~~  157 (321)
                      +...+..............    .....+++.++|++.++-..               .|.|+.++.. ++..... ..-
T Consensus        94 i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~  171 (314)
T d1pjxa_          94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF  171 (314)
T ss_dssp             EEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred             EEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCc
Confidence            8888876553221111111    12467889999988776422               2345555433 3322222 122


Q ss_pred             CCeeEEEEccCCC-----EEEEEeCCCeEEEEeCCCCceee------eeccCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 020798          158 DPVTAVDFNRDGT-----MIVTSSYDGLCRIWDASTGHCMK------TLIDDENPPVSFVKFSPNGKFILVGTLDNTLRL  226 (321)
Q Consensus       158 ~~v~~~~~~~~~~-----~l~~~~~dg~i~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i  226 (321)
                      .....++|+|++.     ++++-+..+.|..||+.....+.      .+..........+++..+|++.++....+.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            2346789988764     44455678889888875332221      111111223567899999998887778899999


Q ss_pred             EeCCCCcEEEEEeccCCceeEEEeEEEecCCe-EEEEeCCCCeEEEEEccc
Q 020798          227 WNYSTGKILKTYTGHTNSKYCISSTFSVTNGK-YIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       227 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~  276 (321)
                      ||...++.+..+........+  ++| .++++ ++++.+.+|.|..+++..
T Consensus       252 ~dp~~g~~~~~i~~p~~~~t~--~af-g~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         252 FGPDGGQPKMRIRCPFEKPSN--LHF-KPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             ECTTCBSCSEEEECSSSCEEE--EEE-CTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EeCCCCEEEEEEECCCCCEEE--EEE-eCCCCEEEEEECCCCcEEEEECCC
Confidence            998877766666543332222  233 45664 667778888888888743

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1e-06  Score=68.29  Aligned_cols=214  Identities=12%  Similarity=0.143  Sum_probs=120.9

Q ss_pred             cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCC---cEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798           96 TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDE---TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus        96 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      .|.|.|..... ...+..+...+...+|||||+.|+......   .+.+.+...+... .+..+........|+|++..+
T Consensus        20 ~l~i~d~dG~~-~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCC-cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence            46666765443 344444566678899999999998654332   4666676665543 444567778899999999988


Q ss_pred             EEEeC-CCe--EEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCC--eEEEEeCCCCcEEEEEeccCCcee
Q 020798          173 VTSSY-DGL--CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDN--TLRLWNYSTGKILKTYTGHTNSKY  246 (321)
Q Consensus       173 ~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~  246 (321)
                      +.... .+.  +..+.........  ............+++++..+.... .++  .|.+.++..+..... .....  .
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~-~~~~~--~  172 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQ--VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-TWEGS--Q  172 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEE--CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC-CCSSS--E
T ss_pred             eEeeecCCccceeeccccccccee--eeeccccccccccccccccceecccccCCceEeeeecccccceee-ecccc--c
Confidence            76553 332  2222222222111  112223334556777777665544 344  466666655543222 22211  1


Q ss_pred             EEEeEEEecCCeEEEEeCC-CCe--EEEEEcccceEEEEecCCCCCeEEEEecCCCceEEEEeecC-CccEEEcccc
Q 020798          247 CISSTFSVTNGKYIVSGSE-DSC--VYLWELQSRKVVQKLEGHTDPVISVASHPTENIIASGALDN-DRTVKIWTQE  319 (321)
Q Consensus       247 ~~~~~~~~~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~-~~~i~iw~~~  319 (321)
                      ... ....+++..++..+. .+.  +.+.+...+..  .+..+........|+|||+.|+-.+..+ ...|.+++++
T Consensus       173 ~~~-~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         173 NQD-ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             EEE-EEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             ccc-cccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            122 233467776665543 344  44445444332  3333455667889999999988766432 3357777764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.8e-07  Score=78.76  Aligned_cols=275  Identities=13%  Similarity=0.081  Sum_probs=141.3

Q ss_pred             ccEEEEEECCCCCEEEEec---------CCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC
Q 020798           24 RAISSVKFSHDGRLLASSS---------ADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD   94 (321)
Q Consensus        24 ~~v~~~~~s~~g~~l~~~~---------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d   94 (321)
                      ..+....|||||++++...         ..+...+||+.....      .++.........+....|||||+.||-.. +
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~------~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~  133 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-E  133 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------EECCCTTCCSCCCSBCCBCSSTTCEEEEE-T
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCce------eeccCccCCccccceeeeccCCceEEEEe-c
Confidence            3566788999999987753         356777888764321      12222222334455678999999998765 5


Q ss_pred             CcEEEEecCCcceeeeee-cCccc-----------------EEEEEECCCCCEEEEeeC-CCcEE---------------
Q 020798           95 KTIRLWDVPTATCLKTLI-GHTNY-----------------VFCVNFNPQSNMIVSGAF-DETVR---------------  140 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~-~~~~~-----------------v~~~~~~~~~~~l~~~~~-dg~i~---------------  140 (321)
                      +.|.+.+..++...+... +....                 -..+.|||||+.|+.... +..+.               
T Consensus       134 ~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~  213 (465)
T d1xfda1         134 NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV  213 (465)
T ss_dssp             TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred             ceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccccccccee
Confidence            678888876655433221 11111                 146779999999887542 22232               


Q ss_pred             ------------------EEecCCCEEEEEE-e-----CCCCCeeEEEEccCCCEEEEEeC-C---CeEEEEeCCCCcee
Q 020798          141 ------------------IWDVKTGKCLKVL-P-----AHSDPVTAVDFNRDGTMIVTSSY-D---GLCRIWDASTGHCM  192 (321)
Q Consensus       141 ------------------~wd~~~~~~~~~~-~-----~~~~~v~~~~~~~~~~~l~~~~~-d---g~i~~~d~~~~~~~  192 (321)
                                        ++|+.++...... +     ....-+..+.|.|+++.++.... +   ..+.++|..++++.
T Consensus       214 ~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             EEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             eeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence                              3333222111100 0     00112567889999876655432 2   25778899888765


Q ss_pred             eeeccCCCC----CeEEEEEccCCCEEEE---EecCC--eEEEEeCC------CCcEEEEEeccCCceeEEEeEEEecCC
Q 020798          193 KTLIDDENP----PVSFVKFSPNGKFILV---GTLDN--TLRLWNYS------TGKILKTYTGHTNSKYCISSTFSVTNG  257 (321)
Q Consensus       193 ~~~~~~~~~----~~~~~~~~~~g~~l~~---~~~d~--~i~i~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (321)
                      .........    .-....|+++|+.++.   ...+|  .+..+++.      .++.+..+....-.+..+ ..+....+
T Consensus       294 ~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i-~~~d~~~~  372 (465)
T d1xfda1         294 KKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI-LAYDEKGN  372 (465)
T ss_dssp             EEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE-EEEETTTT
T ss_pred             EEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEE-EEEcCCCC
Confidence            433221111    1123578999875432   22233  33333321      122222222111111111 11222334


Q ss_pred             eEEEEeCCCC--eEEEEEc--ccceEEEEec---CCCCCeEEEEecCCCceEEEEe
Q 020798          258 KYIVSGSEDS--CVYLWEL--QSRKVVQKLE---GHTDPVISVASHPTENIIASGA  306 (321)
Q Consensus       258 ~~l~~~~~dg--~i~vwd~--~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~~  306 (321)
                      ....++..++  .-.+|.+  ........+.   .......++.|||++++++...
T Consensus       373 ~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~  428 (465)
T d1xfda1         373 KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (465)
T ss_dssp             EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             EEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEe
Confidence            4444555432  2234444  3332222221   2334567999999999988654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.01  E-value=2.1e-06  Score=68.47  Aligned_cols=206  Identities=9%  Similarity=0.062  Sum_probs=127.0

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC----CcEEEE
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD----KTIRLW  100 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d----~~i~iw  100 (321)
                      .+..++|.++|++.++-...+.|..|+....        .....+.........++++++|+++++...+    +.+...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~--------~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~  112 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK--------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  112 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTC--------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCC--------eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEE
Confidence            4467899999997777777888877754321        1112222334567899999999977765432    234445


Q ss_pred             ecCCcceeeeeec--CcccEEEEEECCCCCEEEEeeC------CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEE
Q 020798          101 DVPTATCLKTLIG--HTNYVFCVNFNPQSNMIVSGAF------DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMI  172 (321)
Q Consensus       101 d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  172 (321)
                      +............  -......+++.++|++.++...      .+.+..++...+.. ..+...-.....++|+|+++.|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~~~~~pnGia~s~dg~~l  191 (319)
T d2dg1a1         113 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVL  191 (319)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEE
T ss_pred             cCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-EEEeeccceeeeeeeccccceE
Confidence            5444433222211  1234677899999987766432      23355555443322 2222222345679999999865


Q ss_pred             -EEEeCCCeEEEEeCCCC-ceee----e--eccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEec
Q 020798          173 -VTSSYDGLCRIWDASTG-HCMK----T--LIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTG  240 (321)
Q Consensus       173 -~~~~~dg~i~~~d~~~~-~~~~----~--~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~  240 (321)
                       ++-+..+.|..||+... ....    .  ...........++++++|++.++....+.|.+||. +++.+..+..
T Consensus       192 yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~  266 (319)
T d2dg1a1         192 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI  266 (319)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence             45567889999987532 1111    1  11111223567999999998888888999999994 6888887754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.2e-07  Score=76.54  Aligned_cols=204  Identities=11%  Similarity=0.081  Sum_probs=120.0

Q ss_pred             EEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEe---------CCCcEEE
Q 020798           29 VKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSAS---------DDKTIRL   99 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~---------~d~~i~i   99 (321)
                      ..|.+++.++.. ..+|.+.+|+............   .  ....-.+....||||+++++...         ..+.+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~---~--~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEG---K--KIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECT---T--TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcC---c--cccccccceeEECCCCCeEEEEEcccceeEeeccccEEE
Confidence            468888877654 4577888988765321100000   1  11223566788999999887764         3467889


Q ss_pred             EecCCcceeeee--ecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC-CC-----------------C
Q 020798          100 WDVPTATCLKTL--IGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH-SD-----------------P  159 (321)
Q Consensus       100 wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~-----------------~  159 (321)
                      +|+.+++.....  ......+....|+|||+.++-.. ++.|++.+...+..++..... ..                 .
T Consensus        96 ~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~  174 (465)
T d1xfda1          96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (465)
T ss_dssp             EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             EEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccc
Confidence            999887643221  12233345578999999988765 577888887766544433211 11                 1


Q ss_pred             eeEEEEccCCCEEEEEeC-CCe---------------------------------EEEEeCCCCceeeeecc-----CCC
Q 020798          160 VTAVDFNRDGTMIVTSSY-DGL---------------------------------CRIWDASTGHCMKTLID-----DEN  200 (321)
Q Consensus       160 v~~~~~~~~~~~l~~~~~-dg~---------------------------------i~~~d~~~~~~~~~~~~-----~~~  200 (321)
                      -..+.|+|||+.|+.... +..                                 +.++|+.++........     ...
T Consensus       175 ~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~  254 (465)
T d1xfda1         175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (465)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccc
Confidence            246789999999887642 222                                 23333332211111000     011


Q ss_pred             CCeEEEEEccCCCEEEEEec-C---CeEEEEeCCCCcEEEEEe
Q 020798          201 PPVSFVKFSPNGKFILVGTL-D---NTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       201 ~~~~~~~~~~~g~~l~~~~~-d---~~i~i~d~~~~~~~~~~~  239 (321)
                      ..+..+.|+|++++++.... +   ..+.++|..+++....+.
T Consensus       255 ~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             ceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence            12556889999986665432 2   258889999887665554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.75  E-value=2e-05  Score=61.83  Aligned_cols=221  Identities=13%  Similarity=0.080  Sum_probs=136.0

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeCC
Q 020798           78 DLVFSS-DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPAH  156 (321)
Q Consensus        78 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  156 (321)
                      ...|++ ++++..+--..+.|..||..+++.. . ......+.++++.++++++++ +.+ -+.++|..+++........
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~-~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-V-HALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-E-EECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-E-EECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            356776 4555555556788999998887642 2 223456778888888876665 444 5888999888754333211


Q ss_pred             ----CCCeeEEEEccCCCEEEEEeC----CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE-ecCCeEEEE
Q 020798          157 ----SDPVTAVDFNRDGTMIVTSSY----DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-TLDNTLRLW  227 (321)
Q Consensus       157 ----~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~d~~i~i~  227 (321)
                          ...+.++.+.|+|++.++...    .+.-.+|.+..++..... .. -...+.++++++++.+..+ +..+.|..|
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~-~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF-AD-ISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE-EE-ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe-ec-cCCcceeeecCCCceEEEeecccceeeEe
Confidence                124678899999987665432    234455655555433222 11 2235678999999876655 456789888


Q ss_pred             eCCCC------cEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCeEEEEec-CCCc
Q 020798          228 NYSTG------KILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPVISVASH-PTEN  300 (321)
Q Consensus       228 d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-p~~~  300 (321)
                      ++...      +....... ..............+|.+.++.-..+.|..||- .++.+..+.-....+++++|- |+.+
T Consensus       176 ~~d~~~~~~~~~~~~~~~~-~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             eecccccccccceEEEecc-CcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCC
Confidence            86421      11111111 111111223334567887777667788999994 678888887666678999995 5654


Q ss_pred             -eEEEEe
Q 020798          301 -IIASGA  306 (321)
Q Consensus       301 -~l~s~~  306 (321)
                       +++|.+
T Consensus       254 ~LyvTta  260 (295)
T d2ghsa1         254 RLLVTSA  260 (295)
T ss_dssp             EEEEEEB
T ss_pred             EEEEEEC
Confidence             445533

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.68  E-value=1.4e-05  Score=61.78  Aligned_cols=225  Identities=11%  Similarity=0.127  Sum_probs=117.0

Q ss_pred             EECCC--CCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeC-C-----CcEEEEecCCCEEEE
Q 020798           80 VFSSD--SRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAF-D-----ETVRIWDVKTGKCLK  151 (321)
Q Consensus        80 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~~wd~~~~~~~~  151 (321)
                      ..+|+  |+.++-.+ ++.|.+.|+.+++. ..+..+.......+|+|||+.|+.... +     ..|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35677  88887654 45788889988874 456666677888999999999875432 2     247778887776554


Q ss_pred             EEe------CCCCCeeEEEEccCCCEEEEEeCC------CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe
Q 020798          152 VLP------AHSDPVTAVDFNRDGTMIVTSSYD------GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       152 ~~~------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      ...      ..........|+|+++.++.....      ..+...+...+......    ........+.+.+..++...
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  158 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN----LGPATHILFADGRRVIGRNT  158 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC----SCSCSEEEEETTEEEEEESC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec----CCccceeeecCCCeEEEeec
Confidence            321      111234678899999988765432      23444454443322111    11122233333333333322


Q ss_pred             cCC-----------eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCC--CCeEEEEEcccceEEEEecCC
Q 020798          220 LDN-----------TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSE--DSCVYLWELQSRKVVQKLEGH  286 (321)
Q Consensus       220 ~d~-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~h  286 (321)
                      ...           ................ .........   .... ...+.....  ...|.++|+.+.+.. .+..+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~  232 (281)
T d1k32a2         159 FELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSP---VIVG-HRIYFITDIDGFGQIYSTDLDGKDLR-KHTSF  232 (281)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEE---EEET-TEEEEEECTTSSCEEEEEETTSCSCE-ECCCC
T ss_pred             cccceeeeeccCCcceeeeeccccceeecc-CCcccccee---eeec-cccceecccccccceEEEeCCCCceE-EeecC
Confidence            211           1111111111111111 111111111   1112 233333333  345777888765533 33332


Q ss_pred             CCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          287 TDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       287 ~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                      .. .....|+|||+.|+-..   ++.|.++|++.
T Consensus       233 ~~-~~~~~~SpDG~~I~f~~---~~~l~~~d~~~  262 (281)
T d1k32a2         233 TD-YYPRHLNTDGRRILFSK---GGSIYIFNPDT  262 (281)
T ss_dssp             CS-SCEEEEEESSSCEEEEE---TTEEEEECTTT
T ss_pred             CC-cccccCcCCCCEEEEEe---CCEEEEEECCC
Confidence            21 22346899999988753   46788888753

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.44  E-value=3.2e-05  Score=59.70  Aligned_cols=228  Identities=14%  Similarity=0.196  Sum_probs=116.4

Q ss_pred             EECCC--CCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeC-CC-----cEEEEe
Q 020798           30 KFSHD--GRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASD-DK-----TIRLWD  101 (321)
Q Consensus        30 ~~s~~--g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-d~-----~i~iwd  101 (321)
                      ..|||  |+.+|-.+ ++.|.++++.+.         ..+.++.+...+...+|||||+.|+.... ++     .|.+++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g---------~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~   74 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSG---------STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN   74 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTC---------CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCC---------CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEE
Confidence            35788  99888765 456777766532         23445666778889999999999885532 22     366777


Q ss_pred             cCCcceeeee------ecCcccEEEEEECCCCCEEEEeeCC------CcEEEEecCCCEEEEEEeCCCCCeeEEEEccCC
Q 020798          102 VPTATCLKTL------IGHTNYVFCVNFNPQSNMIVSGAFD------ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDG  169 (321)
Q Consensus       102 ~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (321)
                      ..+++.....      ...........|+|+++.|+.....      ..+...+...+.....   +....... +.+++
T Consensus        75 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~  150 (281)
T d1k32a2          75 GENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHI-LFADG  150 (281)
T ss_dssp             TTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEE-EEETT
T ss_pred             ecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCcccee-eecCC
Confidence            7766543211      1122335678899999988764322      2345555555543221   22222333 33444


Q ss_pred             CEEEE-EeCCC-----------eEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEec--CCeEEEEeCCCCcEE
Q 020798          170 TMIVT-SSYDG-----------LCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTL--DNTLRLWNYSTGKIL  235 (321)
Q Consensus       170 ~~l~~-~~~dg-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--d~~i~i~d~~~~~~~  235 (321)
                      ..++. .....           ............. ... ..........+.++. .+.....  ...|.++|+..++..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~  227 (281)
T d1k32a2         151 RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK-KIV-DMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR  227 (281)
T ss_dssp             EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE-EEE-CCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE
T ss_pred             CeEEEeeccccceeeeeccCCcceeeeecccccee-ecc-CCccccceeeeeccc-cceecccccccceEEEeCCCCceE
Confidence            43332 22111           0111111111111 111 112223334455443 2222222  336788888766543


Q ss_pred             EEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEE
Q 020798          236 KTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVV  280 (321)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (321)
                      . +...... . . ..+ .+||+.|+- ..++.|+++|+.+++..
T Consensus       228 ~-lt~~~~~-~-~-~~~-SpDG~~I~f-~~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         228 K-HTSFTDY-Y-P-RHL-NTDGRRILF-SKGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             E-CCCCCSS-C-E-EEE-EESSSCEEE-EETTEEEEECTTTCCEE
T ss_pred             E-eecCCCc-c-c-ccC-cCCCCEEEE-EeCCEEEEEECCCCCEE
Confidence            3 3222211 1 1 123 367877665 34678999999877643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.33  E-value=0.00033  Score=54.63  Aligned_cols=217  Identities=14%  Similarity=0.063  Sum_probs=131.9

Q ss_pred             EEEECCCC-CEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 020798           28 SVKFSHDG-RLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTAT  106 (321)
Q Consensus        28 ~~~~s~~g-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  106 (321)
                      ...|.+.. ++..+=-..+.|..|+.....         ...+ .....+.++++.++|+++++ +.+ .+.++|..+++
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~---------~~~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~   89 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGR---------KTVH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGV   89 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTE---------EEEE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCe---------EEEE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccce
Confidence            46788754 444444456677777654321         1111 12345788999889887765 444 58899998886


Q ss_pred             eeeeee----cCcccEEEEEECCCCCEEEEeeC----CCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEE-EEeC
Q 020798          107 CLKTLI----GHTNYVFCVNFNPQSNMIVSGAF----DETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIV-TSSY  177 (321)
Q Consensus       107 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~  177 (321)
                      ......    .....+..+.+.|+|++.++...    .+.-.+|.+..++....... -.....++|+++++.++ +-+.
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~  168 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTK  168 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETT
T ss_pred             eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecc
Confidence            432211    11235788899999987766432    23445666666765444432 23457899999998655 5556


Q ss_pred             CCeEEEEeCCCC--ce---eeee--ccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccCCceeEEEe
Q 020798          178 DGLCRIWDASTG--HC---MKTL--IDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHTNSKYCISS  250 (321)
Q Consensus       178 dg~i~~~d~~~~--~~---~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  250 (321)
                      .+.|..+++...  ..   ...+  ..........++++.+|++.++.-..+.|..|| .+++.+..+.......  .++
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~--T~~  245 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQT--TCP  245 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBE--EEE
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCce--EEE
Confidence            788888876421  11   1111  112233467889999999887776788999999 4688888886543322  223


Q ss_pred             EEEecCCeEE
Q 020798          251 TFSVTNGKYI  260 (321)
Q Consensus       251 ~~~~~~~~~l  260 (321)
                      +|--++.+.|
T Consensus       246 ~FGG~d~~~L  255 (295)
T d2ghsa1         246 AFIGPDASRL  255 (295)
T ss_dssp             EEESTTSCEE
T ss_pred             EEeCCCCCEE
Confidence            4444554333

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.23  E-value=0.00073  Score=54.59  Aligned_cols=274  Identities=10%  Similarity=0.082  Sum_probs=135.4

Q ss_pred             EEEEECCCCCEEEEecCCc-----------eEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC-
Q 020798           27 SSVKFSHDGRLLASSSADK-----------TLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD-   94 (321)
Q Consensus        27 ~~~~~s~~g~~l~~~~~d~-----------~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d-   94 (321)
                      .......+|++++.|+.+.           .+.+||.....-.    ..+. ....|..-....++.+++++++.|+.+ 
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~----~~~~-~~~~~~~~~~~~~~~~~g~i~v~Gg~~~   97 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS----DRTV-TVTKHDMFCPGISMDGNGQIVVTGGNDA   97 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC----CCEE-EECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEe----ecCC-CCCCcccceeEEEEecCCcEEEeecCCC
Confidence            3444567888888877421           2557876542110    0000 011222233456788999998888665 


Q ss_pred             CcEEEEecCCcceeeeeec-CcccEEEEEECCCCCEEEEeeCC------CcEEEEecCCCEEEEEEeC----------CC
Q 020798           95 KTIRLWDVPTATCLKTLIG-HTNYVFCVNFNPQSNMIVSGAFD------ETVRIWDVKTGKCLKVLPA----------HS  157 (321)
Q Consensus        95 ~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~----------~~  157 (321)
                      ..+.+||..+......-.. ....-...+..++++.++.++.+      ..+.+||..+.+-.. ++.          +.
T Consensus        98 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~  176 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQ  176 (387)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTT
T ss_pred             cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee-cCCCccccccccccc
Confidence            5799999877654321110 11112345667889988887643      358899988765322 110          00


Q ss_pred             -----CCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeecc--C---CC--CCeEEEEE-ccCCCEEEEEecCC--
Q 020798          158 -----DPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLID--D---EN--PPVSFVKF-SPNGKFILVGTLDN--  222 (321)
Q Consensus       158 -----~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~---~~--~~~~~~~~-~~~g~~l~~~~~d~--  222 (321)
                           ..-..+..-++++.+..+...+.+.+++..+.........  .   ..  ..-..+.+ ..+++.++.|+...  
T Consensus       177 ~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~  256 (387)
T d1k3ia3         177 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ  256 (387)
T ss_dssp             GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred             ceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCC
Confidence                 0011122334566666666677777777665432211100  0   00  01112222 33566777765321  


Q ss_pred             ------eEEEEeCCC---CcEEEEEeccC-CceeEEEeEEEecCCeEEEEeCCCC-----------eEEEEEcccceE--
Q 020798          223 ------TLRLWNYST---GKILKTYTGHT-NSKYCISSTFSVTNGKYIVSGSEDS-----------CVYLWELQSRKV--  279 (321)
Q Consensus       223 ------~i~i~d~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg-----------~i~vwd~~~~~~--  279 (321)
                            ...+.+...   ........... .....- .....++++.++.|+.+.           .+.+||..+.+-  
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~  335 (387)
T d1k3ia3         257 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH-TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK  335 (387)
T ss_dssp             SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC-EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred             CCcccceeecccccccccCCCceeeccccccccccc-eeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEE
Confidence                  233333221   11111111100 011101 112236788888887431           478899877642  


Q ss_pred             EEEecCCCCCeEEEEecCCCceEEEEee
Q 020798          280 VQKLEGHTDPVISVASHPTENIIASGAL  307 (321)
Q Consensus       280 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~  307 (321)
                      +..+......=......+||+.|+.|+.
T Consensus       336 ~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         336 QNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCCCcccceEEEEECCCCEEEEEeCC
Confidence            2111111100012345799999999873

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=0.0013  Score=50.08  Aligned_cols=221  Identities=7%  Similarity=-0.005  Sum_probs=133.4

Q ss_pred             cccccEEEEEECCCCCEEEEE-eCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEE-EeeCCCcEEEEecCCCE
Q 020798           71 GHEQGVSDLVFSSDSRFLVSA-SDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIV-SGAFDETVRIWDVKTGK  148 (321)
Q Consensus        71 ~h~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~  148 (321)
                      .+...+..++|.+..+.|+-+ ..++.|+..++........+..-...+..+++..-++.|+ +-...+.|.+.++....
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            344557789998877766654 5567788888876543333332234578899987666665 44556789999987554


Q ss_pred             EEEEEeCCCCCeeEEEEccCCCEEEEEeCC-Ce--EEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeE
Q 020798          149 CLKVLPAHSDPVTAVDFNRDGTMIVTSSYD-GL--CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTL  224 (321)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i  224 (321)
                      ....+.........+++.|...+++..... +.  |.--++.... ...+....-.....+++++.++.|..+. ..+.|
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I  191 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ceeeeeecccccceEEEeecCcEEEEEeCCCCEE
Confidence            333333334567899999987766654322 23  4333444332 2233323333457899998877776554 56789


Q ss_pred             EEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCC-CCCeEEEEecC
Q 020798          225 RLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGH-TDPVISVASHP  297 (321)
Q Consensus       225 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p  297 (321)
                      ...|+........+.+... ...++.    .++....+-...+.|...|..+++.+..+..+ .....+++..+
T Consensus       192 ~~~~~~g~~~~~v~~~~~~-P~~lav----~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         192 ECLNPAQPGRRKVLEGLQY-PFAVTS----YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEETTEEEEEEEEECCCS-EEEEEE----ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             EEEECCCCCeEEEECCCCC-cEEEEE----ECCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            9999875544334443222 223322    25666666667788988998888776655322 23444555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.91  E-value=0.003  Score=50.73  Aligned_cols=222  Identities=14%  Similarity=0.175  Sum_probs=130.3

Q ss_pred             EEEECC---CCCEEEEEe-CCCcEEEEecCCcceeeeeec-CcccEEEEEECC--CCCEEEEeeCC--------------
Q 020798           78 DLVFSS---DSRFLVSAS-DDKTIRLWDVPTATCLKTLIG-HTNYVFCVNFNP--QSNMIVSGAFD--------------  136 (321)
Q Consensus        78 ~~~~~~---~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~d--------------  136 (321)
                      .+++..   ||++|+... .+..|.+.|+++.++.+.+.. ....+..+...+  +-.++++++..              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455543   788887664 677899999999887554322 233455555544  44567665552              


Q ss_pred             ----CcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCC---------------eEEEEe------------
Q 020798          137 ----ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDG---------------LCRIWD------------  185 (321)
Q Consensus       137 ----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~~~d------------  185 (321)
                          +.+.++|..+.+....+... .....++++++|+++++.+.+.               .+.+++            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                23567888888766655533 3456789999999888776432               123333            


Q ss_pred             -----------CCCC---ceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCc------------EEEEE
Q 020798          186 -----------ASTG---HCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGK------------ILKTY  238 (321)
Q Consensus       186 -----------~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~------------~~~~~  238 (321)
                                 .+..   .....+.  .......+..+|||+++++++ .+.++.|+|+++-.            .....
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIP--VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             cEEeCCceeecccccCCcceeEEEe--cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence                       2211   0011110  011223578999999998766 58899999986411            11111


Q ss_pred             eccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccc----------eEEEEecCCCCCe-----EEEEecCCCceEE
Q 020798          239 TGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSR----------KVVQKLEGHTDPV-----ISVASHPTENIIA  303 (321)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~h~~~v-----~~~~~~p~~~~l~  303 (321)
                      ..   ..-.+-..| ...|....+---|..|.-|++...          ..+.++.-|-++=     .+-...|+|++|+
T Consensus       326 el---glgPLht~f-d~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~  401 (459)
T d1fwxa2         326 EL---GLGPLHTAF-DGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV  401 (459)
T ss_dssp             BC---CSCEEEEEE-CTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred             cc---CcCcccccc-CCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEE
Confidence            11   111222233 345665666678999999998532          4455665544321     1123578899988


Q ss_pred             EEe
Q 020798          304 SGA  306 (321)
Q Consensus       304 s~~  306 (321)
                      +..
T Consensus       402 ~~n  404 (459)
T d1fwxa2         402 CLS  404 (459)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            864

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.89  E-value=0.0037  Score=50.23  Aligned_cols=244  Identities=12%  Similarity=0.167  Sum_probs=130.4

Q ss_pred             EEEEECCCCCEEEEEeCCC-----------cEEEEecCCcceeee---eecCcccEEEEEECCCCCEEEEeeCC-CcEEE
Q 020798           77 SDLVFSSDSRFLVSASDDK-----------TIRLWDVPTATCLKT---LIGHTNYVFCVNFNPQSNMIVSGAFD-ETVRI  141 (321)
Q Consensus        77 ~~~~~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~  141 (321)
                      .......+|+.++.|+.+.           .+.+||..+++....   ...+.......++.+++..++.|+.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            3344556788877777431           367899988754221   12233334456788999998888655 57999


Q ss_pred             EecCCCEEEEEEeCC-CCCeeEEEEccCCCEEEEEeCC------CeEEEEeCCCCceeee--ec------cCC-----CC
Q 020798          142 WDVKTGKCLKVLPAH-SDPVTAVDFNRDGTMIVTSSYD------GLCRIWDASTGHCMKT--LI------DDE-----NP  201 (321)
Q Consensus       142 wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~--~~------~~~-----~~  201 (321)
                      ||..+..-...-... ...-...+..+++++++.++.+      ..+.+||..+..-...  ..      ...     ..
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  182 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  182 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecc
Confidence            999877643221111 1122456777899988887643      3588999876542110  00      000     00


Q ss_pred             CeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEeccC------CceeEEEeEEEecCCeEEEEeCCCC--------
Q 020798          202 PVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGHT------NSKYCISSTFSVTNGKYIVSGSEDS--------  267 (321)
Q Consensus       202 ~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg--------  267 (321)
                      ....+..-++|+.+..+...+.+.+++..+...........      .....-.......+++.++.|+...        
T Consensus       183 ~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~  262 (387)
T d1k3ia3         183 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT  262 (387)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred             ceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccc
Confidence            01123344577777777777778888877665433221100      0111112222334677777776321        


Q ss_pred             eEEEEEcccc---e-EEEEecC--CCCCeEEEEecCCCceEEEEeecCC---------ccEEEccccc
Q 020798          268 CVYLWELQSR---K-VVQKLEG--HTDPVISVASHPTENIIASGALDND---------RTVKIWTQEK  320 (321)
Q Consensus       268 ~i~vwd~~~~---~-~~~~~~~--h~~~v~~~~~~p~~~~l~s~~~d~~---------~~i~iw~~~~  320 (321)
                      ...+.++...   . .......  +...-.+.+..|++++++.|+.+..         ..+.+||.+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~  330 (387)
T d1k3ia3         263 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ  330 (387)
T ss_dssp             CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred             eeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCC
Confidence            2333443221   1 1111111  1112234555689999999885421         1477888753

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.52  E-value=0.014  Score=46.78  Aligned_cols=185  Identities=11%  Similarity=0.128  Sum_probs=109.2

Q ss_pred             EEEeeCCCcEEEEecCCCEEEEEEeCCC---------------------------------------CCe--eEEEEcc-
Q 020798          130 IVSGAFDETVRIWDVKTGKCLKVLPAHS---------------------------------------DPV--TAVDFNR-  167 (321)
Q Consensus       130 l~~~~~dg~i~~wd~~~~~~~~~~~~~~---------------------------------------~~v--~~~~~~~-  167 (321)
                      |.+|+..|.++++-+-+++.+..++...                                       +..  ..+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            5678888999999888877766654211                                       011  1233432 


Q ss_pred             --CCCEEEEEe-CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEc--cCCCEEEEEecCC------------------eE
Q 020798          168 --DGTMIVTSS-YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFS--PNGKFILVGTLDN------------------TL  224 (321)
Q Consensus       168 --~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~l~~~~~d~------------------~i  224 (321)
                        ||+++++.. .+++|.+.|+++.++.+.+.......+..+...  |+-.+++..+...                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              577766655 678999999998877554433333445555554  4556777665532                  36


Q ss_pred             EEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCC---C------------eEEEEEc---------------
Q 020798          225 RLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSED---S------------CVYLWEL---------------  274 (321)
Q Consensus       225 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g------------~i~vwd~---------------  274 (321)
                      .++|..+.+............    ..-..++|+++++.+.+   +            .+.+++.               
T Consensus       176 t~ID~~tm~V~~QV~V~g~ld----~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGNLD----NCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEETTTTEEEEEEEESSCCC----CEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             EEEecCCceEEEEeeeCCChh----ccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence            788988888776654333221    12223677777665422   1            2344443               


Q ss_pred             --------ccc---eEEEEecCCCCCeEEEEecCCCceEEEEeecCCccEEEccccc
Q 020798          275 --------QSR---KVVQKLEGHTDPVISVASHPTENIIASGALDNDRTVKIWTQEK  320 (321)
Q Consensus       275 --------~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~d~~~~i~iw~~~~  320 (321)
                              +..   ..+..+.... .-..+..+|||+++++++.- +.++.++|.+|
T Consensus       252 ngV~VVD~~~~~~~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKL-s~tVSViD~~K  306 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKL-SPTVTVLDVTR  306 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEEEES-SCCCEEECTTSSEEEEECTT-SSBEEEEEGGG
T ss_pred             CCceeecccccCCcceeEEEecCC-CCCceEECCCCCEEEEeCCc-CCcEEEEEehh
Confidence                    211   1111121111 23578999999999888753 46899999875

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.015  Score=44.04  Aligned_cols=211  Identities=9%  Similarity=-0.045  Sum_probs=120.7

Q ss_pred             cccEEEEEECCCCCEEEEE-eCCCcEEEEecCCcc---eeeee-ecCcccEEEEEECCCCCEEEE-eeCCCcEEEEecCC
Q 020798           73 EQGVSDLVFSSDSRFLVSA-SDDKTIRLWDVPTAT---CLKTL-IGHTNYVFCVNFNPQSNMIVS-GAFDETVRIWDVKT  146 (321)
Q Consensus        73 ~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~  146 (321)
                      ...+..++|.+..+.|+-. ...+.|...++....   ....+ ......+..+++.+.++.|.. -...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            3456789998877766644 455667666654321   11122 222234567888876665544 45667899999876


Q ss_pred             CEEEEEEeCCCCCeeEEEEccCCCEEEEEe--CCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE-ecCCe
Q 020798          147 GKCLKVLPAHSDPVTAVDFNRDGTMIVTSS--YDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG-TLDNT  223 (321)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~d~~  223 (321)
                      ................++++|...++....  ..+.|.-.++.... ...+..........+++++.++.|..+ ...+.
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~  187 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eecccccccceeeEEEeeccccEEEEecCCcCE
Confidence            655555555556678999998766655543  33456555655332 333333333446789999887776665 45678


Q ss_pred             EEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCC
Q 020798          224 LRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGH  286 (321)
Q Consensus       224 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h  286 (321)
                      |...++.......................  .++..+.+-..++.|...+..++.....+...
T Consensus       188 I~~~~~dG~~~~~~~~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~  248 (266)
T d1ijqa1         188 ISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAEN  248 (266)
T ss_dssp             EEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred             EEEEECCCCCEEEEEeCCCcccccEEEEE--ECCEEEEEECCCCeEEEEECCCCcceEEEEcC
Confidence            99989865443333332222111122121  24555555566777877777666554444433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.19  E-value=0.051  Score=46.06  Aligned_cols=164  Identities=14%  Similarity=0.115  Sum_probs=93.0

Q ss_pred             CcEEEEecCCCEEEEEEeCCCCCe---------eEEEEccCCC---EEEEEeCCCeEEEEeCCCCceeeeeccCC-----
Q 020798          137 ETVRIWDVKTGKCLKVLPAHSDPV---------TAVDFNRDGT---MIVTSSYDGLCRIWDASTGHCMKTLIDDE-----  199 (321)
Q Consensus       137 g~i~~wd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-----  199 (321)
                      ..+...|.++++.+-.++.....+         .......+++   .++..+.+|.+.++|..+++.+.......     
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            456778899998776665432221         1222223443   45678899999999998887653211000     


Q ss_pred             -------CC--------------------------CeEEEEEccCCCEEEEEecC-------------------------
Q 020798          200 -------NP--------------------------PVSFVKFSPNGKFILVGTLD-------------------------  221 (321)
Q Consensus       200 -------~~--------------------------~~~~~~~~~~g~~l~~~~~d-------------------------  221 (321)
                             ..                          .-...+++|+...+++...+                         
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                   00                          00124566766655543322                         


Q ss_pred             ------------CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCC
Q 020798          222 ------------NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDP  289 (321)
Q Consensus       222 ------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~  289 (321)
                                  |.|.-+|+.+++.+-+.........   .... ..+.++++|+.||.++-+|.++++.+.+++-....
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~---g~l~-TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~  507 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG---GTLY-TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG  507 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS---BCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCc---ceeE-ecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc
Confidence                        3577788888887765532211110   0111 23556777999999999999999999877542211


Q ss_pred             -eEEEEecCCCc-eEEE
Q 020798          290 -VISVASHPTEN-IIAS  304 (321)
Q Consensus       290 -v~~~~~~p~~~-~l~s  304 (321)
                       -.=+.|..+|+ |++.
T Consensus       508 ~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         508 IGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             CSCCEEEEETTEEEEEE
T ss_pred             eecceEEEECCEEEEEE
Confidence             11144445775 4433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.032  Score=42.13  Aligned_cols=211  Identities=9%  Similarity=-0.014  Sum_probs=118.1

Q ss_pred             CcccEEEEEECCCCCEEEEe-cCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE-EEeCCCcEEE
Q 020798           22 HLRAISSVKFSHDGRLLASS-SADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV-SASDDKTIRL   99 (321)
Q Consensus        22 h~~~v~~~~~s~~g~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-~~~~d~~i~i   99 (321)
                      ....+..++|.+..+.|.-. ...+.|.-.++.....    .......+......+..+++.+.++.|+ +-...+.|.+
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~----~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v  103 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG----VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  103 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCC----CcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEe
Confidence            34566789999877766544 3455555444432111    0011111122224466788877655555 4456678999


Q ss_pred             EecCCcceeeeeecCcccEEEEEECCCCCEEEEee--CCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE-e
Q 020798          100 WDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGA--FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS-S  176 (321)
Q Consensus       100 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  176 (321)
                      .++........+.........++++|...+++...  ..+.|...++............-.....+++.+.++.|..+ .
T Consensus       104 ~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~  183 (266)
T d1ijqa1         104 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  183 (266)
T ss_dssp             EETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             EecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC
Confidence            99887665444444455678899998766665543  34567666765444333333334556889999877766655 5


Q ss_pred             CCCeEEEEeCCCCceeeeeccCC-CCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcEEEEE
Q 020798          177 YDGLCRIWDASTGHCMKTLIDDE-NPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       177 ~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~~~~~  238 (321)
                      ..+.|...++............. ......+++.  +.+|..+. .++.|...+..+++....+
T Consensus       184 ~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         184 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence            67788888886543222221111 1223345554  34454443 5567777776665544433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.06  E-value=0.072  Score=45.34  Aligned_cols=60  Identities=15%  Similarity=0.172  Sum_probs=39.8

Q ss_pred             CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC
Q 020798          222 NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG  285 (321)
Q Consensus       222 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  285 (321)
                      |.|.-||+.+++.+-.........   ..... ..+.+++.|+.||.++-+|.++++.+.+++.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~---gg~ls-TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVW---GGTMA-TAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCC---SBCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEeCCCCceecccCCCCCCc---cceeE-ecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence            467788888887765543211110   00111 2456777899999999999999999987754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.038  Score=41.65  Aligned_cols=208  Identities=8%  Similarity=0.015  Sum_probs=123.6

Q ss_pred             cCCcccEEEEEECCCCCEEEEe-cCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEE-EEeCCCcE
Q 020798           20 NGHLRAISSVKFSHDGRLLASS-SADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLV-SASDDKTI   97 (321)
Q Consensus        20 ~~h~~~v~~~~~s~~g~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-~~~~d~~i   97 (321)
                      ..+.+.+..++|.+..+.|.-. ..++.|...++....      .  ...+......+..+++..-++.|+ +-...+.|
T Consensus        32 ~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~------~--~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I  103 (263)
T d1npea_          32 HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE------P--TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRI  103 (263)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC------C--EEEECTTCCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC------c--EEEEEeccccccEEEEeccCCeEEEeccCCCEE
Confidence            3445567789999877766544 455667666554311      1  111111224578889976555555 55567789


Q ss_pred             EEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCC---CcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEE
Q 020798           98 RLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD---ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus        98 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  174 (321)
                      .+.++........+.........++++|...+++.....   ..|..-++............-.....+++.+.++.|..
T Consensus       104 ~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         104 EVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             EEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEE
Confidence            999987654322222223567889999988777654322   23444455443323323233345678999887776655


Q ss_pred             E-eCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcEEEEEe
Q 020798          175 S-SYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       175 ~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~~~~~~~  239 (321)
                      + ...+.|...|+..... ..+...... ...+++.  +..|.... ..+.|...|..+++.+..+.
T Consensus       184 ~d~~~~~I~~~~~~g~~~-~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         184 VDAGTHRAECLNPAQPGR-RKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EETTTTEEEEEETTEEEE-EEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EeCCCCEEEEEECCCCCe-EEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            5 4678898888875443 333333222 3456664  44555544 56789999988888776664

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.87  E-value=0.081  Score=42.95  Aligned_cols=246  Identities=13%  Similarity=0.115  Sum_probs=121.8

Q ss_pred             CCcccEEEEEECCCCCEEEE-----ecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCC-
Q 020798           21 GHLRAISSVKFSHDGRLLAS-----SSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDD-   94 (321)
Q Consensus        21 ~h~~~v~~~~~s~~g~~l~~-----~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d-   94 (321)
                      ++.-.+...++|||++++|.     |+....++++|+.+....      + ..+.  ......+.|.++++.|+....+ 
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~------~-~~i~--~~~~~~~~W~~D~~~~~Y~~~~~  192 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL------P-DVLE--RVKFSCMAWTHDGKGMFYNAYPQ  192 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE------E-EEEE--EECSCCEEECTTSSEEEEEECCC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceec------c-cccc--cccccceEEcCCCCEEEEEEecc
Confidence            34444556788999999884     233456888887643210      0 1111  1112468899999987755432 


Q ss_pred             ---------------CcEEEEecCCccee--eeeec--CcccEEEEEECCCCCEEEEee---CCCc--EEEEecCCCE--
Q 020798           95 ---------------KTIRLWDVPTATCL--KTLIG--HTNYVFCVNFNPQSNMIVSGA---FDET--VRIWDVKTGK--  148 (321)
Q Consensus        95 ---------------~~i~iwd~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~l~~~~---~dg~--i~~wd~~~~~--  148 (321)
                                     ..|..+.+.+....  ..+..  ....+..+..++++++++...   .+..  +.+.|+....  
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~  272 (430)
T d1qfma1         193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (430)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             ccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccc
Confidence                           24777777665322  11222  223456677889998875432   2333  3444543221  


Q ss_pred             ------EEEEEeCCCCCeeEEEEccCCCEEEEEe---CCCeEEEEeCCCCce--eeeeccCCCCCeEEEEEccCCCEEEE
Q 020798          149 ------CLKVLPAHSDPVTAVDFNRDGTMIVTSS---YDGLCRIWDASTGHC--MKTLIDDENPPVSFVKFSPNGKFILV  217 (321)
Q Consensus       149 ------~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~  217 (321)
                            ....+.........+. +.++.+++...   .++.+...++.....  ...+.......+..-.+...+.+|+.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl  351 (430)
T d1qfma1         273 ITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL  351 (430)
T ss_dssp             SCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred             cccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEE
Confidence                  1112222222222222 22333444333   235666666654321  12333333333433344445556665


Q ss_pred             Ee-cCC--eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEe---CCCCeEEEEEcccce
Q 020798          218 GT-LDN--TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSG---SEDSCVYLWELQSRK  278 (321)
Q Consensus       218 ~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~vwd~~~~~  278 (321)
                      .. .++  .|+++++.+++..............+  .....+....+.-   ..-.++.-+|+.+++
T Consensus       352 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~--~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGY--SGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEE--ECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEcCCEeEEEEEECCCCcEEEecCCCCceEeec--cCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            54 454  58999998887665544333322211  1111222333322   244678888887764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.80  E-value=0.12  Score=43.74  Aligned_cols=152  Identities=14%  Similarity=0.067  Sum_probs=87.0

Q ss_pred             CEEEEEeCCCcEEEEecCCcceeeeeecCcc-cEEEEEECC--CCCEEEEee------CCCcEEEEecCCCEEEEEEeCC
Q 020798           86 RFLVSASDDKTIRLWDVPTATCLKTLIGHTN-YVFCVNFNP--QSNMIVSGA------FDETVRIWDVKTGKCLKVLPAH  156 (321)
Q Consensus        86 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~  156 (321)
                      ..++.++.|+.+.-.|.++++.......... .-..+.-.|  -++.++.+.      ..|.|+-+|+++++.+-.+...
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  195 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence            3566788899999999999886544321110 000011111  123444443      3678999999999877654321


Q ss_pred             C-------------------------------------CCe-eEEEEccCCCEEEEEeC----------------CCeEE
Q 020798          157 S-------------------------------------DPV-TAVDFNRDGTMIVTSSY----------------DGLCR  182 (321)
Q Consensus       157 ~-------------------------------------~~v-~~~~~~~~~~~l~~~~~----------------dg~i~  182 (321)
                      .                                     ..+ ...++.+....++.+..                ...+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svv  275 (571)
T d2ad6a1         196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccccee
Confidence            1                                     111 23455666666555433                24567


Q ss_pred             EEeCCCCceeeeeccCCC--------CCeEEEEEccCCC---EEEEEecCCeEEEEeCCCCcEEEE
Q 020798          183 IWDASTGHCMKTLIDDEN--------PPVSFVKFSPNGK---FILVGTLDNTLRLWNYSTGKILKT  237 (321)
Q Consensus       183 ~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~---~l~~~~~d~~i~i~d~~~~~~~~~  237 (321)
                      ..|.++++..-.....+.        ..........+|+   .++.++.+|.+.++|..+++++..
T Consensus       276 Ald~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         276 GRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence            778888876644332111        1122222333443   356678899999999999988754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.67  E-value=0.095  Score=44.20  Aligned_cols=61  Identities=15%  Similarity=0.257  Sum_probs=40.9

Q ss_pred             CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEecc
Q 020798          179 GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYTGH  241 (321)
Q Consensus       179 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  241 (321)
                      |.+.-+|+.+++..-+......  ...-.+.-.+.++++++.|+.++.+|..+|+.+-++...
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~--~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH--WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS--CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEeCCCCeEeeeccCCCC--CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence            4566778887776544432211  111122335668888999999999999999999888654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.65  E-value=0.15  Score=42.97  Aligned_cols=164  Identities=14%  Similarity=0.178  Sum_probs=94.5

Q ss_pred             CcEEEEecCCCEEEEEEeCCCCCee---------EEEEccCCC---EEEEEeCCCeEEEEeCCCCceeeeeccCCC----
Q 020798          137 ETVRIWDVKTGKCLKVLPAHSDPVT---------AVDFNRDGT---MIVTSSYDGLCRIWDASTGHCMKTLIDDEN----  200 (321)
Q Consensus       137 g~i~~wd~~~~~~~~~~~~~~~~v~---------~~~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----  200 (321)
                      ..|.-.|+++++..-.++.....+.         -+....+++   .++.++.+|.+.++|..+++.+........    
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            3466678888887655543222221         122222333   566778899999999988876533211100    


Q ss_pred             -------------------------------CCeEEEEEccCCCEEEEEec-----------------------------
Q 020798          201 -------------------------------PPVSFVKFSPNGKFILVGTL-----------------------------  220 (321)
Q Consensus       201 -------------------------------~~~~~~~~~~~g~~l~~~~~-----------------------------  220 (321)
                                                     ..-...+++|+...+.+...                             
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                           00012456776666655432                             


Q ss_pred             -------CCeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCe-EE
Q 020798          221 -------DNTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV-IS  292 (321)
Q Consensus       221 -------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v-~~  292 (321)
                             .|.|.-||+.+++.+-.+........   .... ..+.++++|+.||.++-+|..+++.+.+++...... .=
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~g---g~l~-TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P  505 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNG---GTLS-TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP  505 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCC---CEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCCCCCC---ceeE-ECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC
Confidence                   24678889999988776543221110   0111 245667789999999999999999998776432110 11


Q ss_pred             EEecCCCc-eEEE
Q 020798          293 VASHPTEN-IIAS  304 (321)
Q Consensus       293 ~~~~p~~~-~l~s  304 (321)
                      +.+..+|+ +|+.
T Consensus       506 ~ty~~dGkqyv~v  518 (560)
T d1kv9a2         506 MTFELAGRQYVAI  518 (560)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEE
Confidence            34445675 4443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.52  E-value=0.17  Score=42.73  Aligned_cols=59  Identities=14%  Similarity=0.152  Sum_probs=40.6

Q ss_pred             eEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecC
Q 020798          223 TLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEG  285 (321)
Q Consensus       223 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  285 (321)
                      .|.-||+.+++.+-.+.........   .. ...+.++++|+.||.++.||.++++.+.+++.
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg---~l-stagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGG---TL-TTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCC---EE-EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCc---eE-EEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            5777888888877665433211100   11 12466777899999999999999999987754

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.21  E-value=0.19  Score=39.33  Aligned_cols=187  Identities=13%  Similarity=0.268  Sum_probs=101.2

Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCeeEEEEcc----C--CCEEEEEeC-C---CeEEEEeCCC-Cceee
Q 020798          125 PQSNMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNR----D--GTMIVTSSY-D---GLCRIWDAST-GHCMK  193 (321)
Q Consensus       125 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~----~--~~~l~~~~~-d---g~i~~~d~~~-~~~~~  193 (321)
                      |+..+++.....+-|++||+. |+.+..++  .+.+..+..-.    .  ..-+++++. +   .++.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345677777777779999986 66666554  34555554432    2  223445542 2   3677776642 22222


Q ss_pred             eeccCC------CCCeEEEEE--ccC-CC-EEEEEecCCeEEEEeCC---CC----cEEEEEeccCCceeEEEeEEEecC
Q 020798          194 TLIDDE------NPPVSFVKF--SPN-GK-FILVGTLDNTLRLWNYS---TG----KILKTYTGHTNSKYCISSTFSVTN  256 (321)
Q Consensus       194 ~~~~~~------~~~~~~~~~--~~~-g~-~l~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~  256 (321)
                      .+....      ...+..+++  ++. |. ++++...+|.+..|.+.   .+    ++++.+.....    ...|...+.
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q----~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQ----TEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSC----EEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCc----cceEEEeCC
Confidence            221110      112334444  554 54 45566678888888652   23    34555544332    233444455


Q ss_pred             CeEEEEeCCCCeEEEEEccc-----ceEEEEecC--CCCCeEEEEec--CCCc-eEEEEeecCCccEEEcccc
Q 020798          257 GKYIVSGSEDSCVYLWELQS-----RKVVQKLEG--HTDPVISVASH--PTEN-IIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       257 ~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~--h~~~v~~~~~~--p~~~-~l~s~~~d~~~~i~iw~~~  319 (321)
                      ...|..+-++.-|..+++..     +..+....+  ....+-.|+.-  +++. +|+..+++ +.+..+|+.+
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG-~n~f~vydr~  262 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQG-NSSYAIYERQ  262 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGG-GTEEEEEESS
T ss_pred             CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCC-CCeEEEEecC
Confidence            56777777776665555531     233333332  35667777643  3333 67666654 6789999875

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.13  E-value=0.25  Score=39.95  Aligned_cols=241  Identities=12%  Similarity=0.122  Sum_probs=121.4

Q ss_pred             cEEEEEECCCCCEEEEE-eCCC----cEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCC-------------
Q 020798           75 GVSDLVFSSDSRFLVSA-SDDK----TIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFD-------------  136 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~-~~d~----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------  136 (321)
                      .+..+.++|++++++.+ +.+|    .++++|+.+++.+..... ......++|.+++..|+....+             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            44567889999988754 2233    699999999986543221 1112467899999877654322             


Q ss_pred             ---CcEEEEecCCCE--EEEEEeCCC--CCeeEEEEccCCCEEEEEeC---CCe--EEEEeCCCCce-------eeeecc
Q 020798          137 ---ETVRIWDVKTGK--CLKVLPAHS--DPVTAVDFNRDGTMIVTSSY---DGL--CRIWDASTGHC-------MKTLID  197 (321)
Q Consensus       137 ---g~i~~wd~~~~~--~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~---dg~--i~~~d~~~~~~-------~~~~~~  197 (321)
                         ..+..+.+.+..  ....+....  ..+..+..++++++++....   ++.  +.+.|+.....       ...+..
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  284 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence               257777765542  122333322  33556777889887664322   233  34445432211       111111


Q ss_pred             CCCCCeEEEEEccCCCEEEEEe---cCCeEEEEeCCCCcE---EEEEeccCCceeEEEeEEEecCCeEEEEeCCCC--eE
Q 020798          198 DENPPVSFVKFSPNGKFILVGT---LDNTLRLWNYSTGKI---LKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS--CV  269 (321)
Q Consensus       198 ~~~~~~~~~~~~~~g~~l~~~~---~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i  269 (321)
                      ........ ..+.++.+++...   .++.|...++.+...   ...+..+.... .. ..+...++.+++.--.++  .|
T Consensus       285 ~~~~~~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~-~~-~~~~~~~~~lvl~~~~~~~~~l  361 (430)
T d1qfma1         285 NFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV-LE-WVACVRSNFLVLCYLHDVKNTL  361 (430)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCE-EE-EEEEETTTEEEEEEEETTEEEE
T ss_pred             ccccceEE-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcce-ee-eEEEEECCEEEEEEEcCCEeEE
Confidence            21222222 2223333444333   235666666654321   22222222222 11 122222344444444454  58


Q ss_pred             EEEEcccceEEEEecCCCCCeEEEEecCCCc--eEEEEeecCCccEEEcccc
Q 020798          270 YLWELQSRKVVQKLEGHTDPVISVASHPTEN--IIASGALDNDRTVKIWTQE  319 (321)
Q Consensus       270 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~~~d~~~~i~iw~~~  319 (321)
                      +++++..++.........+.|..+...++..  ++...|.-...++.-+|++
T Consensus       362 ~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~  413 (430)
T d1qfma1         362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT  413 (430)
T ss_dssp             EEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred             EEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECC
Confidence            8899887766544443445566665555543  3333444445667777664

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.76  E-value=0.18  Score=42.53  Aligned_cols=79  Identities=16%  Similarity=0.254  Sum_probs=47.5

Q ss_pred             cEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCC-EEE
Q 020798          138 TVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK-FIL  216 (321)
Q Consensus       138 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~  216 (321)
                      .+.-||+.+++.+-..+... +...-...-.+.++++++.||.++.+|.++++.+-++.......-.-+.|..+|+ |++
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~  536 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            56677877877665544321 2111122335678888999999999999999988666443321111234445675 444


Q ss_pred             E
Q 020798          217 V  217 (321)
Q Consensus       217 ~  217 (321)
                      +
T Consensus       537 v  537 (573)
T d1kb0a2         537 V  537 (573)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.61  E-value=0.53  Score=39.65  Aligned_cols=79  Identities=16%  Similarity=0.219  Sum_probs=50.0

Q ss_pred             CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCCCCe-EEEEecCCCc
Q 020798          222 NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHTDPV-ISVASHPTEN  300 (321)
Q Consensus       222 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~p~~~  300 (321)
                      |.|.-+|+.+++.+-+..........   ... ..+.++++|+.||.++-+|.++++.+.+++...... .=+.+..+|+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g---~ls-tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAG---VLA-TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSC---CEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccc---eeE-EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            56788888888877766543221111   111 246677789999999999999999998876432111 1145556775


Q ss_pred             -eEEE
Q 020798          301 -IIAS  304 (321)
Q Consensus       301 -~l~s  304 (321)
                       |+|.
T Consensus       542 qYv~i  546 (582)
T d1flga_         542 QYLGV  546 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.36  E-value=0.26  Score=41.68  Aligned_cols=80  Identities=20%  Similarity=0.312  Sum_probs=51.3

Q ss_pred             CcEEEEecCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCC-EE
Q 020798          137 ETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGK-FI  215 (321)
Q Consensus       137 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l  215 (321)
                      |.|.-+|+.+++..-..+.+ .++..-..+..+.++++++.||.++.+|.++++.+-+........-.-+.+..+|+ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            56777888888766555432 22222223345667788999999999999999988766544332222255666775 45


Q ss_pred             EE
Q 020798          216 LV  217 (321)
Q Consensus       216 ~~  217 (321)
                      ++
T Consensus       545 ~i  546 (582)
T d1flga_         545 GV  546 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.44  Score=35.63  Aligned_cols=106  Identities=12%  Similarity=0.136  Sum_probs=50.9

Q ss_pred             CCCEEEEEecC-----CeEEEEeCCCCcEEEEEeccCCceeEEEeEEEecCCeEEEEeCCCC-----eEEEEEcccceEE
Q 020798          211 NGKFILVGTLD-----NTLRLWNYSTGKILKTYTGHTNSKYCISSTFSVTNGKYIVSGSEDS-----CVYLWELQSRKVV  280 (321)
Q Consensus       211 ~g~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~  280 (321)
                      ++..++.|+.+     ..+..||..+.+....-.. ..........  ..++..++.|+.++     ....+|..+.+..
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~--~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~  224 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM-NTIRSGAGVC--VLHNCIYAAGGYDGQDQLNSVERYDVETETWT  224 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             eecceEecCcccccccceEEEeecccccccccccc-cccccccccc--ceeeeEEEecCccccccccceeeeeecceeee
Confidence            44455555543     3578888876654322111 1111111111  13566666665443     4566777655432


Q ss_pred             EEecCCCCCe-EEEEecCCCceEEEEeecCCc---cEEEccccc
Q 020798          281 QKLEGHTDPV-ISVASHPTENIIASGALDNDR---TVKIWTQEK  320 (321)
Q Consensus       281 ~~~~~h~~~v-~~~~~~p~~~~l~s~~~d~~~---~i~iw~~~~  320 (321)
                      ..-....... .+++. .++++++.|+.++..   .|.+||.+.
T Consensus       225 ~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         225 FVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDT  267 (288)
T ss_dssp             ECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             cccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCC
Confidence            2111111111 12332 367888888765432   367888764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.89  E-value=0.75  Score=37.27  Aligned_cols=71  Identities=14%  Similarity=0.180  Sum_probs=40.7

Q ss_pred             ceeeeeccCCcccEEEEEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCC
Q 020798           13 YTLTQTLNGHLRAISSVKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSD   84 (321)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~   84 (321)
                      +++.....+ ...-++|+|.|||++|++--..|.|++++....................-.++...|+++|+
T Consensus        17 f~~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          17 FDKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SCEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             cEEEEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            444444444 35667999999999988876578888876443221100000001111122467889999985

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.82  E-value=0.56  Score=35.47  Aligned_cols=212  Identities=11%  Similarity=0.217  Sum_probs=119.2

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCC-EEEEEEeCC
Q 020798           78 DLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTG-KCLKVLPAH  156 (321)
Q Consensus        78 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~  156 (321)
                      +.-.+|..+.||.-+ ...+.++|+++.+.++...-.. .|.-=.|-.+. .|+-.. +..|+-|++... .+.+.+..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            455789888887655 5689999999998887766444 33334454443 443333 356999998543 345555544


Q ss_pred             C----CCeeEEEEccCCCEEEEEe---C----CCeEEEEeCCCCceeeeeccCCCCCeEEEEEccCC-----CEEEEE--
Q 020798          157 S----DPVTAVDFNRDGTMIVTSS---Y----DGLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNG-----KFILVG--  218 (321)
Q Consensus       157 ~----~~v~~~~~~~~~~~l~~~~---~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~l~~~--  218 (321)
                      .    ..|..-..+++.++++..+   .    .|.+.+|..+...  ...+..|..  ....+-.+|     +.++.+  
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~--sQ~ieGhaa--~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAA--SFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE--EEEECCSEE--EEEEECCTTCSSCEEEEEEEEE
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc--Cccccceee--eeEEEEcCCCCCCceEEEEEEC
Confidence            3    3455666678888765432   2    3567888876542  222222211  112221111     112222  


Q ss_pred             -ecCCeEEEEeCCCCc--------E-EEE-EeccCCceeEEEeEEEecCCeEEEEeCCCCeEEEEEcccceEEEEecCCC
Q 020798          219 -TLDNTLRLWNYSTGK--------I-LKT-YTGHTNSKYCISSTFSVTNGKYIVSGSEDSCVYLWELQSRKVVQKLEGHT  287 (321)
Q Consensus       219 -~~d~~i~i~d~~~~~--------~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~  287 (321)
                       ...+.++|.++....        . +.. +.........+....+ +....+..-+.-|.|.+||+.++.++..-+--.
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs-~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~  297 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-EKHDVVFLITKYGYIHLYDLETGTCIYMNRISG  297 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE-TTTTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee-ccCCEEEEEecCcEEEEEEcccccEEEEeecCC
Confidence             123578888875421        1 111 1111223344544444 345566677889999999999999887666555


Q ss_pred             CCeEEEEecCC
Q 020798          288 DPVISVASHPT  298 (321)
Q Consensus       288 ~~v~~~~~~p~  298 (321)
                      ++|--.+-+.+
T Consensus       298 ~~iF~~a~~~~  308 (327)
T d1utca2         298 ETIFVTAPHEA  308 (327)
T ss_dssp             SCEEEEEEETT
T ss_pred             CceEEeccCCC
Confidence            66654443333

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.80  E-value=0.97  Score=38.12  Aligned_cols=155  Identities=16%  Similarity=0.215  Sum_probs=92.5

Q ss_pred             CEEEEeeCCCcEEEEecCCCEEEEEEeCCCCCe-eEEEEcc--CCCEEEEEeC------CCeEEEEeCCCCceeeeeccC
Q 020798          128 NMIVSGAFDETVRIWDVKTGKCLKVLPAHSDPV-TAVDFNR--DGTMIVTSSY------DGLCRIWDASTGHCMKTLIDD  198 (321)
Q Consensus       128 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~  198 (321)
                      ..++.++.|+.|.-.|.++++.+..+....... ..+.-.|  .+..++.+..      .|.|+-+|+++++.+-++...
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            468888999999999999998877664321100 0011011  1334555532      488999999999876543211


Q ss_pred             C-------------------------------------CCCeEEEEEccCCCEEEEEec----------------CCeEE
Q 020798          199 E-------------------------------------NPPVSFVKFSPNGKFILVGTL----------------DNTLR  225 (321)
Q Consensus       199 ~-------------------------------------~~~~~~~~~~~~g~~l~~~~~----------------d~~i~  225 (321)
                      .                                     ...-..+.+++....+..+..                ...|.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence            0                                     001123456666666655532                23577


Q ss_pred             EEeCCCCcEEEEEeccCCce-------eEEEeEEEecCC---eEEEEeCCCCeEEEEEcccceEEEE
Q 020798          226 LWNYSTGKILKTYTGHTNSK-------YCISSTFSVTNG---KYIVSGSEDSCVYLWELQSRKVVQK  282 (321)
Q Consensus       226 i~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~  282 (321)
                      -.|+.+++.+-.++......       ..+.......+|   ..++.+..+|.+.++|..+++++..
T Consensus       282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence            88999999887775422111       111111111233   4678889999999999999988753

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.17  E-value=0.91  Score=35.18  Aligned_cols=190  Identities=13%  Similarity=0.157  Sum_probs=97.2

Q ss_pred             cEEEEEECCCCCEEEEecC------------CceEEEeeccccCCCCCC-----CCCcccccccccccEEEEEECCCCC-
Q 020798           25 AISSVKFSHDGRLLASSSA------------DKTLLTYSLSSISNSDST-----PPSPLQKFTGHEQGVSDLVFSSDSR-   86 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~------------d~~v~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~i~~~~~~~~~~-   86 (321)
                      +--.++..|+|..+++++.            .|.+.++|+.........     .......+..|  ++ ++.-.++|+ 
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph--Gi-~l~~~~dg~~  112 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH--GI-STFIDDDNTV  112 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE--EE-EEEECTTCCE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc--ce-eEEEcCCCcE
Confidence            4446788899987776642            377888887543211000     00000111112  22 122245665 


Q ss_pred             EEEEE---eCCCcEEEEecCCcce----eeeeec-CcccEEEEEECCCCCEEEEee--CC-------------CcEEEEe
Q 020798           87 FLVSA---SDDKTIRLWDVPTATC----LKTLIG-HTNYVFCVNFNPQSNMIVSGA--FD-------------ETVRIWD  143 (321)
Q Consensus        87 ~l~~~---~~d~~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~d-------------g~i~~wd  143 (321)
                      +|++.   ....+|.+|++.....    ..++.. .......++...++.+++|-.  ..             +.-.+|.
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~  192 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  192 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence            34443   2456788888753321    112211 123467788888888888731  10             1223333


Q ss_pred             cCCCEEEEEEeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEeCCCCceeee-eccCCCCCeEEEEEcc-CCCEEEEE
Q 020798          144 VKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTS-SYDGLCRIWDASTGHCMKT-LIDDENPPVSFVKFSP-NGKFILVG  218 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~-~g~~l~~~  218 (321)
                      ...++...... .-.....++++|+++.|+.+ +..+.|+.|++........ ...........+.+.+ +|.+.+++
T Consensus       193 ~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         193 YSPNDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             ECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             EcCCceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            33333222222 22456889999999876655 5678899998864332211 1112233456778876 45554443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=1  Score=35.48  Aligned_cols=182  Identities=13%  Similarity=0.097  Sum_probs=100.1

Q ss_pred             cEEEEEECCCCCEEEEecCCceEEEeeccccCC-----CCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEE
Q 020798           25 AISSVKFSHDGRLLASSSADKTLLTYSLSSISN-----SDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRL   99 (321)
Q Consensus        25 ~v~~~~~s~~g~~l~~~~~d~~v~~~~~~~~~~-----~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~i   99 (321)
                      ...-++.++...+++.|+.++ +++..+.....     ....+..+...+    ..|..++|+.+  .|+.. .++.+..
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~-~~~~l~~  109 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVS-TRNALYS  109 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEE-ESSEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEE-eCCCEEE
Confidence            455678888777888888776 45555443211     111111121111    25888999755  45444 4556888


Q ss_pred             EecCCcceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEe-----CCCCCeeEEEEccCCCEEEE
Q 020798          100 WDVPTATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLP-----AHSDPVTAVDFNRDGTMIVT  174 (321)
Q Consensus       100 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~  174 (321)
                      ++...-........-...+..+.++|.  .++....++.+.++++..++......     .-...+.++.|++.+..+++
T Consensus       110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             EEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence            887664433333333455777777764  56666778999999998775432211     11355777888887777776


Q ss_pred             EeCCCeEEE-EeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEE
Q 020798          175 SSYDGLCRI-WDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVG  218 (321)
Q Consensus       175 ~~~dg~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  218 (321)
                      +..++ ..+ -++.....+... ......+..+.|-.+..++++-
T Consensus       188 ~~g~~-~q~k~~i~~~~~~~~p-~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         188 WRNGE-MEKQFEFSLPSELEEL-PVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EETTE-EEEEEEECCCHHHHTS-CTTTSEEEEEEESSSSEEEEEE
T ss_pred             eCCCc-eeeccCCCCccccCCC-cCCCcceeEEEEecCceEEEEE
Confidence            64332 111 111111100000 1123346778888776666554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.90  E-value=1.5  Score=33.83  Aligned_cols=155  Identities=14%  Similarity=0.204  Sum_probs=86.9

Q ss_pred             cEEEEEECCCCCEEEEEeC------------CCcEEEEecCCcceee-ee--ecC-----cccEEEEEE--CCCCCE-EE
Q 020798           75 GVSDLVFSSDSRFLVSASD------------DKTIRLWDVPTATCLK-TL--IGH-----TNYVFCVNF--NPQSNM-IV  131 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~-~~--~~~-----~~~v~~~~~--~~~~~~-l~  131 (321)
                      +.-+|...|+|..+++++.            .|.|.++|+.+.+... .+  .+.     .-....+.+  .+++.. |+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            4557888899887766542            4889999987653211 11  110     001233333  455653 44


Q ss_pred             Ee---eCCCcEEEEecCCC--EEE--EEEeC-CCCCeeEEEEccCCCEEEEEe-----------------CCCeEEEEeC
Q 020798          132 SG---AFDETVRIWDVKTG--KCL--KVLPA-HSDPVTAVDFNRDGTMIVTSS-----------------YDGLCRIWDA  186 (321)
Q Consensus       132 ~~---~~dg~i~~wd~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~  186 (321)
                      +.   ....+|-+|++...  +..  ..+.. ......++++..++.+++|-.                 ..+.+..||.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            43   24567778776432  221  12211 123467888888888777731                 1123334443


Q ss_pred             CCCceeeeeccCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEeCCCCc
Q 020798          187 STGHCMKTLIDDENPPVSFVKFSPNGKFILVGT-LDNTLRLWNYSTGK  233 (321)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~d~~i~i~d~~~~~  233 (321)
                      .  .. ..... .-...+.++++|++++|+++. ..+.|++|++....
T Consensus       196 ~--~~-~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         196 N--DV-RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             S--CE-EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             C--ce-EEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            3  22 22211 123467899999998887664 57889999986543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.74  E-value=2  Score=30.61  Aligned_cols=148  Identities=9%  Similarity=0.190  Sum_probs=79.1

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEecCCcceeeeee-cCcccEE--------EEEE-CCCCCEEEEeeC-CCcEEEEe
Q 020798           75 GVSDLVFSSDSRFLVSASDDKTIRLWDVPTATCLKTLI-GHTNYVF--------CVNF-NPQSNMIVSGAF-DETVRIWD  143 (321)
Q Consensus        75 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~--------~~~~-~~~~~~l~~~~~-dg~i~~wd  143 (321)
                      .|.++++. +.+..++|+......+|-++.++..+-.. ..-+.|+        .+.+ .+...-|+++.. .|.+++++
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            34455543 34566788888888888888776432111 1112222        2222 222223444544 56666666


Q ss_pred             cCCCEEEEEEeCCCCCeeEEEEccCCCEEEEEe----CCCeEEEEeCCCCceeeeecc------CCCCCeEEEEEccCCC
Q 020798          144 VKTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSS----YDGLCRIWDASTGHCMKTLID------DENPPVSFVKFSPNGK  213 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~g~  213 (321)
                      ...|.           ++...+.+..+. ++.-    ..-.| -+|+++++....-+.      -..-.+..+-+.|+++
T Consensus       184 pkeGS-----------~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~  250 (313)
T d2hu7a1         184 SGEGS-----------FSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGR  250 (313)
T ss_dssp             CSSEE-----------EEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSC
T ss_pred             CCCCc-----------ccceeEccCcee-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCCCc
Confidence            54443           344444444433 3221    22233 457776543322111      1122466677999999


Q ss_pred             EEEEEecCCeEEEEeCCCCcEEEEE
Q 020798          214 FILVGTLDNTLRLWNYSTGKILKTY  238 (321)
Q Consensus       214 ~l~~~~~d~~i~i~d~~~~~~~~~~  238 (321)
                      +++.+-.||.=++|.  +++.+...
T Consensus       251 L~iiakrdG~s~lF~--nGk~in~p  273 (313)
T d2hu7a1         251 LAVVARREGRSAVFI--DGERVEAP  273 (313)
T ss_dssp             EEEEEEETTEEEEEE--TTEEECCC
T ss_pred             EEEEEecCCchheee--cceEecCC
Confidence            989999999999986  45555443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.65  E-value=4.2  Score=31.40  Aligned_cols=201  Identities=12%  Similarity=0.226  Sum_probs=108.2

Q ss_pred             EEEEECC---CCCEEEEEeCCCcEEEEecCCcceeeeeecCcccEEEEEEC------CCCCEEEEeeC--C--CcEEEEe
Q 020798           77 SDLVFSS---DSRFLVSASDDKTIRLWDVPTATCLKTLIGHTNYVFCVNFN------PQSNMIVSGAF--D--ETVRIWD  143 (321)
Q Consensus        77 ~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~--d--g~i~~wd  143 (321)
                      .++.++|   +..+++.....+-|.+||+. ++.+..+.  .+.+..+..-      ....-++.++.  +  ..|.+|.
T Consensus        29 PAIW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          29 PAIWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             EEEECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEE
T ss_pred             ceEEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEE
Confidence            3455555   34567766677679999986 55454442  2344444432      22223444442  2  2577777


Q ss_pred             cCC-CEEEEEEeCC-------CCCeeEEEE--ccC-CC-EEEEEeCCCeEEEEeCC---CCc----eeeeeccCCCCCeE
Q 020798          144 VKT-GKCLKVLPAH-------SDPVTAVDF--NRD-GT-MIVTSSYDGLCRIWDAS---TGH----CMKTLIDDENPPVS  204 (321)
Q Consensus       144 ~~~-~~~~~~~~~~-------~~~v~~~~~--~~~-~~-~l~~~~~dg~i~~~d~~---~~~----~~~~~~~~~~~~~~  204 (321)
                      +.. ...+..+...       ...+..+++  ++. +. ++++...+|.+..|.+.   .+.    .++.+.  ....+.
T Consensus       106 id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~--~~~q~E  183 (353)
T d1h6la_         106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK--MNSQTE  183 (353)
T ss_dssp             EETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE--CSSCEE
T ss_pred             ecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC--CCCccc
Confidence            642 2222222211       123556666  554 44 45566778888887652   222    223332  234578


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCC-----CcEEEEEec--cCCceeEEEeEEEec-CCeEEEEeCCCCeEEEEEccc
Q 020798          205 FVKFSPNGKFILVGTLDNTLRLWNYST-----GKILKTYTG--HTNSKYCISSTFSVT-NGKYIVSGSEDSCVYLWELQS  276 (321)
Q Consensus       205 ~~~~~~~g~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~  276 (321)
                      .+.+++....|+.+-++.-+..++...     +..+....+  .....-.++...... +|-+|++.-.+.+..|||...
T Consensus       184 GCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         184 GMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             eEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            899999988999998887777776542     222322222  112223343322222 334455555678899999876


Q ss_pred             c-eEEEE
Q 020798          277 R-KVVQK  282 (321)
Q Consensus       277 ~-~~~~~  282 (321)
                      . +.+..
T Consensus       264 ~~~~~g~  270 (353)
T d1h6la_         264 QNKYVAD  270 (353)
T ss_dssp             TCCEEEE
T ss_pred             Cccccce
Confidence            4 44443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.19  E-value=5.5  Score=31.09  Aligned_cols=136  Identities=13%  Similarity=0.053  Sum_probs=80.6

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEecCC-----------cceeeeeecCcccEEEEEECCCCCEEEEeeCCCcEEEEec
Q 020798           76 VSDLVFSSDSRFLVSASDDKTIRLWDVPT-----------ATCLKTLIGHTNYVFCVNFNPQSNMIVSGAFDETVRIWDV  144 (321)
Q Consensus        76 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  144 (321)
                      .+-+++++...++++|+.++ ++|.....           .......  .-..+..++++.+  .++.. .++.+..++.
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            45678888777888888775 66765321           1111111  1224778888744  45444 4456777776


Q ss_pred             CCCEEEEEEeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeeec----cCCCCCeEEEEEccCCCEEEEEe
Q 020798          145 KTGKCLKVLPAHSDPVTAVDFNRDGTMIVTSSYDGLCRIWDASTGHCMKTLI----DDENPPVSFVKFSPNGKFILVGT  219 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~l~~~~  219 (321)
                      ..-........-..++.++.++|.  .++....++.+.++++..++......    ......+.++.|++.|..++++.
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            553333333334566778887764  56777888999999988765322110    01123466777887777777653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.70  E-value=7.1  Score=29.31  Aligned_cols=226  Identities=12%  Similarity=0.157  Sum_probs=124.7

Q ss_pred             EEECCCCCEEEEecCCceEEEeeccccCCCCCCCCCcccccccccccEEEEEECCCCCEEEEEeCCCcEEEEecCCc-ce
Q 020798           29 VKFSHDGRLLASSSADKTLLTYSLSSISNSDSTPPSPLQKFTGHEQGVSDLVFSSDSRFLVSASDDKTIRLWDVPTA-TC  107 (321)
Q Consensus        29 ~~~s~~g~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~  107 (321)
                      .-.+|..+.||.=+ ...+.+++++...        .+..+.- ...|.=-.|-.+ +.|+..+ +..|+-|+++.. .+
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~--------klks~~~-~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P  135 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKS--------KMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQP  135 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTE--------EEEEEEC-SSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCC
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhh--------hhceEEc-CCCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCc
Confidence            34678888887755 5689999886422        1222211 123444455544 3454433 457999999543 34


Q ss_pred             eeeeecCc----ccEEEEEECCCCCEEEEee-------CCCcEEEEecCCCEEEEEEeCCCCCeeEEEEccC--C-CEEE
Q 020798          108 LKTLIGHT----NYVFCVNFNPQSNMIVSGA-------FDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRD--G-TMIV  173 (321)
Q Consensus       108 ~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~l~  173 (321)
                      .+-+..|.    ..|..-..+++.++++..+       -.|.+.+|..+.+. -+.+.+|......+.+.-+  . ..++
T Consensus       136 ~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~  214 (327)
T d1utca2         136 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFC  214 (327)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEE
T ss_pred             hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEE
Confidence            45454443    3466666788888865432       23678888876543 4455666543333322211  1 1333


Q ss_pred             EEe---CCCeEEEEeCCCCc----e----eeeeccCC---CCCeEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEEe
Q 020798          174 TSS---YDGLCRIWDASTGH----C----MKTLIDDE---NPPVSFVKFSPNGKFILVGTLDNTLRLWNYSTGKILKTYT  239 (321)
Q Consensus       174 ~~~---~dg~i~~~d~~~~~----~----~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~d~~i~i~d~~~~~~~~~~~  239 (321)
                      .+.   ..+.+++.++....    .    ...+....   ..-.-.+..++.-..+..-+.-|.|++||+.++..+..-.
T Consensus       215 fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR  294 (327)
T d1utca2         215 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  294 (327)
T ss_dssp             EEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee
Confidence            332   23578888875421    1    01111111   1123457778877788888999999999999999887665


Q ss_pred             ccCCceeEEEeEEEecCCeEEEEeCCCCeEE
Q 020798          240 GHTNSKYCISSTFSVTNGKYIVSGSEDSCVY  270 (321)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  270 (321)
                      -...++. +++. ....+. +++-..+|.|.
T Consensus       295 Is~~~iF-~~a~-~~~~~G-i~~VNr~GqVl  322 (327)
T d1utca2         295 ISGETIF-VTAP-HEATAG-IIGVNRKGQVL  322 (327)
T ss_dssp             CCSSCEE-EEEE-ETTTTE-EEEEETTSEEE
T ss_pred             cCCCceE-Eecc-CCCCce-EEEECCCCeEE
Confidence            4444433 2222 222233 33344566654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.48  E-value=6.5  Score=28.67  Aligned_cols=105  Identities=12%  Similarity=0.104  Sum_probs=49.1

Q ss_pred             CCEEEEEeCC-----CeEEEEeCCCCceeeeeccCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEeCCCCcEEEEE
Q 020798          169 GTMIVTSSYD-----GLCRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLD-----NTLRLWNYSTGKILKTY  238 (321)
Q Consensus       169 ~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~d-----~~i~i~d~~~~~~~~~~  238 (321)
                      +..++.++.+     ..+..||..+.+................. ...+..++.++.+     .....+|..+.+....-
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  227 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             ecceEecCcccccccceEEEeecccccccccccccccccccccc-ceeeeEEEecCccccccccceeeeeecceeeeccc
Confidence            4455555443     34677787655422211111111111122 2245555555543     35677887765543321


Q ss_pred             eccCCceeEEEeEEEecCCeEEEEeCCCC-----eEEEEEcccc
Q 020798          239 TGHTNSKYCISSTFSVTNGKYIVSGSEDS-----CVYLWELQSR  277 (321)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~  277 (321)
                      .... ........  ..++++++.|+.++     .|.+||+.+.
T Consensus       228 ~~p~-~r~~~~~~--~~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         228 PMKH-RRSALGIT--VHQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             CCSS-CCBSCEEE--EETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CccC-cccceEEE--EECCEEEEEecCCCCeecceEEEEECCCC
Confidence            1111 11111111  13678888877554     3778888764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.44  E-value=10  Score=30.23  Aligned_cols=53  Identities=11%  Similarity=0.216  Sum_probs=37.1

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEecCCCEEEEEEeC--------CCCCeeEEEEccC
Q 020798          116 NYVFCVNFNPQSNMIVSGAFDETVRIWDVKTGKCLKVLPA--------HSDPVTAVDFNRD  168 (321)
Q Consensus       116 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--------~~~~v~~~~~~~~  168 (321)
                      ...++++|.|+++.|++--..|.|++++..+++.......        -..-...++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3467999999999888765579999998777654332211        1234578999985