Citrus Sinensis ID: 020839

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
MLDSDDDNSSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEVSSYFLL
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccc
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHHHcccEEcc
mldsdddnssvsststmrsdrmsvsgteevqLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITfvggndpeeTERTMQIMWQIVhpklgsnvvatrpsapIITAMVSAWSFLLTTmdgcsldskkWQQSISYFSTlldkddrsIRIAAGEALALILETgslekfsseakgsndgsreEYIHLQGLKGKILNQVRNLsveaggkgsakkdltSQRNLFKDILEFLEVSSYFLL
mldsdddnssvsststmrsdrmsvsgteevqlekDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILetgslekfsseakgsndgsrEEYIHLQGLKGKILNQVRNLSVeaggkgsakkdltsqrNLFKDILEFLEVSSYFLL
MLdsdddnssvsststmrsdrmsvsGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRiaagealalileTGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEVSSYFLL
********************************************L**********ALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG*******************YIHLQGLKGKILNQVRNL******************NLFKDILEFLEVSSYF**
MLDSDDDN************************EKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQC*************LASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKL*******RP*APIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQ***********************LFKDILEFLEVSSYFLL
******************************QLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEK************REEYIHLQGLKGKILNQVRNLSVE*********DLTSQRNLFKDILEFLEVSSYFLL
****************************EVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEA***NDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEVSSYFLL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLDSDDDNSSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEVSSYFLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query320 2.2.26 [Sep-21-2011]
Q5S1U6450 Interferon-related develo yes no 0.890 0.633 0.277 6e-17
O00458451 Interferon-related develo no no 0.887 0.629 0.267 3e-15
P19182449 Interferon-related develo yes no 0.887 0.632 0.270 4e-15
P20695449 Interferon-related develo yes no 0.887 0.632 0.267 1e-13
>sp|Q5S1U6|IFRD1_PIG Interferon-related developmental regulator 1 OS=Sus scrofa GN=IFRD1 PE=2 SV=1 Back     alignment and function desciption
 Score = 88.6 bits (218), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 143/313 (45%), Gaps = 28/313 (8%)

Query: 9   SSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTL 68
           S  S  S+   D   V   E  Q + +  L   +D   +K   TR+ AL  I  A  + +
Sbjct: 54  SGYSDPSSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASRM 113

Query: 69  QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPIS 128
            ++F+ ++  TL       +K+G S E   A+    +L + +G G  S E+L +++ P+ 
Sbjct: 114 LYEFILERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEVL-KTLGPVL 172

Query: 129 QALKSGFDSSKIA--SLLECLAVITFVGGNDPEETERTMQIMWQIVHPKL----GSNVVA 182
           + +     +S  A  +   C  V  F+  +D  E   T+Q +  I          SNV+ 
Sbjct: 173 KKIICDGTASIQARQTCATCFGVCCFIATDDITELYSTLQCLENIFTKSYLKEKDSNVIC 232

Query: 183 TRPSAPIITAMVSAWSFLLTTMDGCSLD--SKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240
           + P+  +  + + AW+ LLT    C L    KK +  +    +LL  DD ++RIAAGE+L
Sbjct: 233 STPNTALHISSLLAWTLLLTI---CPLSEVKKKLEMHVHKLPSLLSSDDVNMRIAAGESL 289

Query: 241 ALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTS 300
           AL+ E          A+G    S   Y  ++ L       +R L+ + G K  AK D   
Sbjct: 290 ALLFEL---------ARGME--SDFFYEDMESLT----QMLRALATD-GNKHRAKVDKRK 333

Query: 301 QRNLFKDILEFLE 313
           QR++F+DIL  +E
Sbjct: 334 QRSVFRDILRAVE 346
Could play a role in regulating gene activity in the proliferative and/or differentiative pathways induced by NGF. May be an autocrine factor that attenuates or amplifies the initial ligand-induced signal.
Sus scrofa (taxid: 9823)
>sp|O00458|IFRD1_HUMAN Interferon-related developmental regulator 1 OS=Homo sapiens GN=IFRD1 PE=1 SV=4 Back     alignment and function description
>sp|P19182|IFRD1_MOUSE Interferon-related developmental regulator 1 OS=Mus musculus GN=Ifrd1 PE=2 SV=2 Back     alignment and function description
>sp|P20695|IFRD1_RAT Interferon-related developmental regulator 1 OS=Rattus norvegicus GN=Ifrd1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
255538078 448 conserved hypothetical protein [Ricinus 0.931 0.665 0.760 1e-133
449447061 442 PREDICTED: interferon-related developmen 0.928 0.671 0.747 1e-127
449515089 442 PREDICTED: LOW QUALITY PROTEIN: interfer 0.928 0.671 0.740 1e-125
224127278 430 predicted protein [Populus trichocarpa] 0.918 0.683 0.731 1e-124
225458824 446 PREDICTED: interferon-related developmen 0.9 0.645 0.755 1e-122
224063451 437 predicted protein [Populus trichocarpa] 0.918 0.672 0.737 1e-117
297845736 442 hypothetical protein ARALYDRAFT_472983 [ 0.928 0.671 0.654 1e-114
42571665 441 Interferon-related developmental regulat 0.928 0.673 0.644 1e-113
356514485 448 PREDICTED: interferon-related developmen 0.925 0.660 0.685 1e-113
356564123 448 PREDICTED: interferon-related developmen 0.915 0.654 0.669 1e-111
>gi|255538078|ref|XP_002510104.1| conserved hypothetical protein [Ricinus communis] gi|223550805|gb|EEF52291.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/305 (76%), Positives = 267/305 (87%), Gaps = 7/305 (2%)

Query: 16  TMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEK 75
           TM+SDR SV GTEEVQ++KD+LLD+ALDALYEKRG+TREKAL+SIIEAFN+ LQHQF+EK
Sbjct: 29  TMKSDRASVLGTEEVQVDKDSLLDQALDALYEKRGATREKALASIIEAFNSNLQHQFLEK 88

Query: 76  KFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGF 135
           KFATLLHQCL+ IK+GSS+EIALASHAIGLLALTVG G+N+REILE+SV PISQALKSG 
Sbjct: 89  KFATLLHQCLNCIKKGSSKEIALASHAIGLLALTVGCGDNAREILEDSVTPISQALKSGS 148

Query: 136 DSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195
           +S+K ASLLECLAV+TFVGGN+P ETER+MQIMWQ+V PKLGSNV A +PSAP+I A+VS
Sbjct: 149 ESTKTASLLECLAVVTFVGGNEPTETERSMQIMWQLVRPKLGSNVAAAKPSAPVIAAVVS 208

Query: 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSE 255
           AW+FLLTTMDG  +D K WQ+SISY S LLDKDDRS+RIAAGEALALI E GSLEKF+ E
Sbjct: 209 AWAFLLTTMDGWKIDPKDWQESISYLSGLLDKDDRSVRIAAGEALALIFEIGSLEKFAGE 268

Query: 256 AKGSND-------GSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDI 308
            K S+D        SRE  +H+QGLK K+LNQVRNLS EAGGKGS KKDL +QRNLFKD+
Sbjct: 269 NKDSDDLPVQGVNKSREVMVHIQGLKSKVLNQVRNLSAEAGGKGSTKKDLNTQRNLFKDV 328

Query: 309 LEFLE 313
           LEFLE
Sbjct: 329 LEFLE 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449447061|ref|XP_004141288.1| PREDICTED: interferon-related developmental regulator 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449515089|ref|XP_004164582.1| PREDICTED: LOW QUALITY PROTEIN: interferon-related developmental regulator 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224127278|ref|XP_002320034.1| predicted protein [Populus trichocarpa] gi|222860807|gb|EEE98349.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225458824|ref|XP_002285282.1| PREDICTED: interferon-related developmental regulator 1 [Vitis vinifera] gi|302142206|emb|CBI19409.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224063451|ref|XP_002301151.1| predicted protein [Populus trichocarpa] gi|222842877|gb|EEE80424.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297845736|ref|XP_002890749.1| hypothetical protein ARALYDRAFT_472983 [Arabidopsis lyrata subsp. lyrata] gi|297336591|gb|EFH67008.1| hypothetical protein ARALYDRAFT_472983 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42571665|ref|NP_973923.1| Interferon-related developmental regulator domain-containing protein [Arabidopsis thaliana] gi|332192754|gb|AEE30875.1| Interferon-related developmental regulator domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356514485|ref|XP_003525936.1| PREDICTED: interferon-related developmental regulator 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356564123|ref|XP_003550306.1| PREDICTED: interferon-related developmental regulator 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
TAIR|locus:2199231 441 SAT32 "SALT-TOLERANCE 32" [Ara 0.9 0.653 0.620 2.6e-95
UNIPROTKB|F1NXH4434 IFRD1 "Uncharacterized protein 0.631 0.465 0.257 2.1e-13
UNIPROTKB|Q5S1U6450 IFRD1 "Interferon-related deve 0.828 0.588 0.263 2.7e-12
UNIPROTKB|F1MN39450 IFRD1 "Uncharacterized protein 0.828 0.588 0.253 6.3e-11
UNIPROTKB|O00458451 IFRD1 "Interferon-related deve 0.828 0.587 0.253 4.4e-10
ASPGD|ASPL0000037897 479 AN3425 [Emericella nidulans (t 0.615 0.411 0.291 5e-10
UNIPROTKB|G4MZN7433 MGG_07026 "Uncharacterized pro 0.821 0.607 0.243 5.3e-10
MGI|MGI:1316717449 Ifrd1 "interferon-related deve 0.828 0.590 0.256 7.5e-10
UNIPROTKB|E2R3H7450 IFRD1 "Uncharacterized protein 0.834 0.593 0.251 2.3e-09
RGD|2867449 Ifrd1 "interferon-related deve 0.834 0.594 0.255 1.1e-08
TAIR|locus:2199231 SAT32 "SALT-TOLERANCE 32" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
 Identities = 183/295 (62%), Positives = 240/295 (81%)

Query:    26 GTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCL 85
             G +EV + KD LLD++LDALYEKR STRE+AL++I++AFN+ LQ++FVEKKFATLLHQCL
Sbjct:    37 GMDEVTVLKDALLDQSLDALYEKRSSTREQALATIVDAFNSDLQYEFVEKKFATLLHQCL 96

Query:    86 SSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLE 145
                K+GS++E +LA+H IGLLALTVG G++++E+LEESV P+SQALKSG +  KI S+LE
Sbjct:    97 HCTKKGSTKETSLATHVIGLLALTVGLGDHAQEVLEESVTPLSQALKSGREILKITSILE 156

Query:   146 CLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMD 205
             CLAVITFVGGNDPE+TE++MQI+WQ++HPKLGSNVVAT+PS  +I+A+VS+W+FLLTT+D
Sbjct:   157 CLAVITFVGGNDPEQTEKSMQIIWQMIHPKLGSNVVATKPSPAVISAVVSSWAFLLTTVD 216

Query:   206 GCSLDSKKWQQSISYFSTLLDKDDRSIRXXXXXXXXXXXXTGSLEKFSSEAKGSNDGS-- 263
               +L  K +Q++++Y STLL+KDDRS+R             G+LEKF++E KGS +GS  
Sbjct:   217 RWTLGPKIFQETVTYLSTLLEKDDRSVRIAAGEALAVIYELGTLEKFAAEVKGSANGSVK 276

Query:   264 -----REEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLE 313
                  +E  +H+ GLK K+  QVR LSVEAGGKGSAKKDL +QRNLFKD++EFLE
Sbjct:   277 EGGVSQEALMHMHGLKAKVTKQVRELSVEAGGKGSAKKDLNTQRNLFKDLVEFLE 331
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009651 "response to salt stress" evidence=IMP
UNIPROTKB|F1NXH4 IFRD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5S1U6 IFRD1 "Interferon-related developmental regulator 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MN39 IFRD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O00458 IFRD1 "Interferon-related developmental regulator 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ASPGD|ASPL0000037897 AN3425 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MZN7 MGG_07026 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
MGI|MGI:1316717 Ifrd1 "interferon-related developmental regulator 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R3H7 IFRD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|2867 Ifrd1 "interferon-related developmental regulator 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
pfam05004309 pfam05004, IFRD, Interferon-related developmental 1e-64
>gnl|CDD|218375 pfam05004, IFRD, Interferon-related developmental regulator (IFRD) Back     alignment and domain information 
 Score =  206 bits (525), Expect = 1e-64
 Identities = 107/326 (32%), Positives = 158/326 (48%), Gaps = 33/326 (10%)

Query: 4   SDDDNSSV----------SSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTR 53
           SDDD+SS            S  +M  D  S+   E  Q + +  L EALD   +K   TR
Sbjct: 1   SDDDSSSDTASILGCMSLLSPGSMEEDGSSILDEEGSQEDLEEKLKEALDDATDKSAKTR 60

Query: 54  EKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG 113
           ++AL +I  A        F+ ++ ATL+  C   +K+G S E ALA+   GLL L +G G
Sbjct: 61  QEALEAIRLALATRYLPDFILERKATLMDLCEKCLKKGKSEEQALAARLAGLLCLQLGPG 120

Query: 114 ENSREILEESVAPISQALKSGFDSSKI-ASLLECLAVITFVGGNDPEETERT---MQIMW 169
             + E+L+E   P++  L  G    K   S   CL ++TFV  +D EE E      +I++
Sbjct: 121 FEAEELLKELEQPLNTLLNDGSAGPKARTSCATCLGLLTFVACSDIEELESNLKCFEIIF 180

Query: 170 QIVHPKLG--SNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDK 227
            I + K    + VV T P   ++ A + AW  LLT +   +L  K          TLL  
Sbjct: 181 AISYLKGDGTTPVVNTAPDEGLVGAALQAWGLLLTIVPSWTL-EKILATHQPKLPTLLSS 239

Query: 228 DDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVE 287
           DD  +RIAAGE LAL+ E           +   +   EE +        +L+Q+R L+ +
Sbjct: 240 DDLDVRIAAGETLALLFELA---------RDEEEDFVEEDME------ALLSQLRQLATD 284

Query: 288 AGGKGSAKKDLTSQRNLFKDILEFLE 313
           +  K  AKKD  +QR+ F+D+L F+E
Sbjct: 285 S-SKYRAKKDRRAQRSTFRDVLRFVE 309

Interferon-related developmental regulator (IFRD1) is the human homologue of the rat early response protein PC4 and its murine homologue TIS7. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary to muscle differentiation and that it might have a role in signal transduction. This family also contains IFRD2 and its murine equivalent SKMc15 which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis. Length = 309

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 320
PF05004309 IFRD: Interferon-related developmental regulator ( 100.0
KOG2842427 consensus Interferon-related protein PC4 like [Cyt 100.0
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.71
KOG2842427 consensus Interferon-related protein PC4 like [Cyt 97.52
PRK09687280 putative lyase; Provisional 97.37
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.95
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 95.87
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 95.85
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.45
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 95.39
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 95.06
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 94.72
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 94.48
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 94.45
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 94.35
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 94.29
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 93.97
PRK09687280 putative lyase; Provisional 93.95
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 93.86
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 93.66
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 93.65
PF05004309 IFRD: Interferon-related developmental regulator ( 93.34
KOG1824 1233 consensus TATA-binding protein-interacting protein 93.13
PF05536 543 Neurochondrin: Neurochondrin 93.03
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 92.96
KOG1824 1233 consensus TATA-binding protein-interacting protein 92.83
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 92.83
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 92.59
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 92.26
PF05804708 KAP: Kinesin-associated protein (KAP) 91.94
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 91.49
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 91.21
KOG1242569 consensus Protein containing adaptin N-terminal re 91.16
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 91.14
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 90.29
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 89.91
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 89.9
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 88.67
KOG2956516 consensus CLIP-associating protein [General functi 88.19
KOG1242 569 consensus Protein containing adaptin N-terminal re 86.42
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 85.31
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 84.93
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 84.78
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 83.79
KOG0166 514 consensus Karyopherin (importin) alpha [Intracellu 83.39
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 83.24
KOG2137700 consensus Protein kinase [Signal transduction mech 83.16
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 82.96
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 82.58
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 82.21
KOG2032533 consensus Uncharacterized conserved protein [Funct 81.95
TIGR02270 410 conserved hypothetical protein. Members are found 81.74
COG5096 757 Vesicle coat complex, various subunits [Intracellu 80.65
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 80.03
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information 
Probab=100.00  E-value=8.8e-70  Score=516.62  Aligned_cols=293  Identities=40%  Similarity=0.556  Sum_probs=249.8

Q ss_pred             CCCCCC-cccccc--cccccccCCCC-------CcccccchhhhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHh
Q 020839            4 SDDDNS-SVSSTS--TMRSDRMSVSG-------TEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFV   73 (320)
Q Consensus         4 sddd~~-~~~S~~--t~~sd~~~~~~-------~~~~~~~~~~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v   73 (320)
                      ||||++ ++.|+.  +..++..+..+       ++..+.+.+++|+++||.+++||+++|+++|++|+++|+++|+++|+
T Consensus         1 SDdd~~~~~~S~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v   80 (309)
T PF05004_consen    1 SDDDSSSDTASHTSSDSSSSTSSEEDDGSEEADEESSQEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFV   80 (309)
T ss_pred             CccccccCccccccCCCcccccccccccccccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHH
Confidence            677774 666664  22222222211       22233444568999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCCh-HHHHHHHHHHHHHHH
Q 020839           74 EKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDS-SKIASLLECLAVITF  152 (320)
Q Consensus        74 ~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s-~~r~~~i~aLa~~~f  152 (320)
                      .+++.||++.|++++|||+++|+.||+++++|+|+|+|++++++++|+.+.|+|+++++|++.+ ..|++|+.|||+++|
T Consensus        81 ~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~f  160 (309)
T PF05004_consen   81 EDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTF  160 (309)
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999765 788999999999999


Q ss_pred             HcCCCHHHHH---HHHHHHHHhhcCC-CCCc-cccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcC
Q 020839          153 VGGNDPEETE---RTMQIMWQIVHPK-LGSN-VVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDK  227 (320)
Q Consensus       153 ~~~~~~~~~~---~~m~~l~~i~~~~-~g~~-~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s  227 (320)
                      +||.++++++   ++|+.+|.....+ +|.. +...++++.|++|||++|+||+|++|++++. +.++.++|+|++||+|
T Consensus       161 v~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s  239 (309)
T PF05004_consen  161 VGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDS  239 (309)
T ss_pred             hhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcC
Confidence            9999999999   4555455544444 4552 2334588999999999999999999999887 8899999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCccccccccCCCCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHH
Q 020839          228 DDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKD  307 (320)
Q Consensus       228 ~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~La~d~s~K~~sKkdrk~qRs~FRd  307 (320)
                      +|++|||||||+||||||++|.  ++++             +.++++++|+++|++||++ |+|+++|||||+||++|||
T Consensus       240 ~d~~VRiAAGEaiAll~E~~~~--~~~~-------------~~~~~~~~l~~~l~~La~d-S~K~~sKkdrk~qRs~Frd  303 (309)
T PF05004_consen  240 DDVDVRIAAGEAIALLYELARD--HEED-------------FLYEDMEELLEQLRELATD-SSKSRSKKDRKQQRSSFRD  303 (309)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhc--cccc-------------ccccCHHHHHHHHHHHHHh-ccCccchhHHHHHHHHHHH
Confidence            9999999999999999999994  2222             2244789999999999998 8999999999999999999


Q ss_pred             HHHHHH
Q 020839          308 ILEFLE  313 (320)
Q Consensus       308 il~tvE  313 (320)
                      |++|||
T Consensus       304 il~~iE  309 (309)
T PF05004_consen  304 ILTTIE  309 (309)
T ss_pred             HHHhhC
Confidence            999997

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 51/337 (15%), Positives = 90/337 (26%), Gaps = 103/337 (30%)

Query: 27  TEEVQLEKDTLL-DEALDALY------EKRGSTREKALSSIIEAFNNTLQHQFVEKKFAT 79
           TE+ Q    T +  E  D LY       K   +R +    + +A       + V      
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV------ 153

Query: 80  LLH-------QCLSSIKRGSSREIALASHAI------GLLALTVGYGENSREILEESVAP 126
           L+          ++             S+ +       +  L +    +   +LE     
Sbjct: 154 LIDGVLGSGKTWVAL--------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE----- 200

Query: 127 ISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPK----LGSNVVA 182
           + Q L    D +   S  +  + I               +++    +      L  NV  
Sbjct: 201 MLQKLLYQIDPN-WTSRSDHSSNIKL---RIHSIQAELRRLLKSKPYENCLLVL-LNVQ- 254

Query: 183 TRPSAPIITAMVSAWSF------LLTTMDGCSLDS----KKWQQSISYFSTLLDKDDRSI 232
              +A    A      F      LLTT      D          S+ + S  L  D+   
Sbjct: 255 ---NAKAWNA------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--- 302

Query: 233 RIAAGEALALILETGSLEKFSSEAKGSN------------DG-SR-EEYIHLQGLKGKIL 278
                  L   L+    +    E   +N            DG +  + + H+   K   L
Sbjct: 303 ---VKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK---L 355

Query: 279 NQVRNLSVEAGGKGSAKKDLTS--QRNLFKDILEFLE 313
             +   S+           L     R +F  +  F  
Sbjct: 356 TTIIESSLNV---------LEPAEYRKMFDRLSVFPP 383

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.77
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.47
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 97.97
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 97.95
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.91
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.89
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.86
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 97.85
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 97.8
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.74
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.74
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.65
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 97.65
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.64
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 97.63
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.6
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 97.56
1qgr_A 876 Protein (importin beta subunit); transport recepto 97.56
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 97.51
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 97.49
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 97.49
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 97.47
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.43
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.42
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 97.42
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 97.39
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.37
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 97.36
1qgr_A 876 Protein (importin beta subunit); transport recepto 97.35
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.34
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.28
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 97.28
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 97.22
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 97.17
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 97.11
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 97.08
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 96.99
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.98
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 96.96
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 96.95
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 96.76
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 96.71
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.58
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 96.41
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 95.82
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 95.27
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 95.26
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 95.15
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 95.09
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 94.93
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 94.93
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 94.92
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 94.68
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 94.65
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 94.65
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 94.51
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 94.46
3nmz_A458 APC variant protein; protein-protein complex, arma 94.25
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 94.12
3nmz_A458 APC variant protein; protein-protein complex, arma 94.09
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 93.36
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 92.62
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 90.89
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 88.92
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 88.5
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 88.33
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 87.81
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 87.64
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 87.64
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 87.08
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 86.76
2x1g_F 971 Cadmus; transport protein, developmental protein, 86.46
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 86.14
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 85.7
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 83.08
2x19_B 963 Importin-13; nuclear transport, protein transport; 83.02
1vsy_5 997 Proteasome activator BLM10; 20S proteasome BLM10, 81.5
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 80.79
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 80.41
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
Probab=98.77  E-value=1.1e-06  Score=78.29  Aligned_cols=188  Identities=16%  Similarity=0.200  Sum_probs=140.3

Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhh-cCCCHHHHHHHHHHHhHHhhhcCCCCChHHH
Q 020839           41 ALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSI-KRGSSREIALASHAIGLLALTVGYGENSREI  119 (320)
Q Consensus        41 ~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~i-kkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i  119 (320)
                      +.+.+..|.-+.|..++..|..++....  .+....+..++..+.+.+ |.....=+..|+++++.++-.+|..  -+..
T Consensus        20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~--~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~~~~   95 (242)
T 2qk2_A           20 FYDKLEEKKWTLRKESLEVLEKLLTDHP--KLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR--FSNY   95 (242)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHCS--SBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG--GHHH
T ss_pred             HHhhhccCCHHHHHHHHHHHHHHHccCC--CCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh--HHHH
Confidence            5566788999999999999998887632  122334467788888888 4555666689999999999888853  4566


Q ss_pred             HHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHH
Q 020839          120 LEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSF  199 (320)
Q Consensus       120 ~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~l  199 (320)
                      ...+.|.|...+.|. ...+|.+++.||..+.-  ...   +..+|+.+...+..          .++.+...++..-+.
T Consensus        96 ~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~--~~~---~~~ll~~l~~~l~~----------~~~~vr~~~l~~l~~  159 (242)
T 2qk2_A           96 ASACVPSLLEKFKEK-KPNVVTALREAIDAIYA--STS---LEAQQESIVESLSN----------KNPSVKSETALFIAR  159 (242)
T ss_dssp             HHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHT--TSC---HHHHHHHHHHHTTC----------SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHH--cCC---HHHHHHHHHHHHcC----------CChHHHHHHHHHHHH
Confidence            677888888888875 45677788777765432  222   44566666665533          457888888888888


Q ss_pred             HHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839          200 LLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS  248 (320)
Q Consensus       200 LlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~  248 (320)
                      ++....+.......+...+|.|..+|+..+.+||-+|-++|+.++....
T Consensus       160 ~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          160 ALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             HHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence            7877654433346778999999999999999999999999999998755
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
d1b3ua_588 Constant regulatory domain of protein phosphatase 97.9
d1b3ua_588 Constant regulatory domain of protein phosphatase 97.84
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.82
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 97.15
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.88
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 96.76
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.49
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 96.32
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 96.31
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.3
d1q1sc_ 434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.2
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 96.11
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 96.03
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 96.02
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 95.81
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.31
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 95.29
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 95.17
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 95.16
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 94.88
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 94.78
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 94.73
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 94.34
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 94.21
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 93.41
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 91.21
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 84.56
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 83.87
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 83.41
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=0.00021  Score=67.97  Aligned_cols=200  Identities=11%  Similarity=-0.026  Sum_probs=130.0

Q ss_pred             HHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHH
Q 020839           43 DALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEE  122 (320)
Q Consensus        43 d~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~  122 (320)
                      ..+.+.....|..++..+........ .   ......|+..+...++....+-+..++++++.++-.+|.    +.+.+.
T Consensus       370 ~~l~d~~~~v~~~~~~~l~~~~~~~~-~---~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~----~~~~~~  441 (588)
T d1b3ua_         370 AQLKDECPEVRLNIISNLDCVNEVIG-I---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV----EFFDEK  441 (588)
T ss_dssp             HHHTCSCHHHHHHHHTTCHHHHHHSC-H---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG----GGCCHH
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHhhcc-h---hhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh----HhHHHH
Confidence            33444455556555544333222111 1   112356777777777766667778888899988888874    345566


Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHh
Q 020839          123 SVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLT  202 (320)
Q Consensus       123 ~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT  202 (320)
                      +.|.+.+.+.|. ...+|.+++.+|+.+.-..|. .......+..++....+          ++..+..+++.+.+-+..
T Consensus       442 l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~-~~~~~~i~~~l~~~~~~----------~~~~~R~~~~~~l~~l~~  509 (588)
T d1b3ua_         442 LNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGK-EWAHATIIPKVLAMSGD----------PNYLHRMTTLFCINVLSE  509 (588)
T ss_dssp             HHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCH-HHHHHHTHHHHHHTTTC----------SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHHH
Confidence            778888877764 457788899999866544332 12223445555554422          556777888888888877


Q ss_pred             cCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCccccccccCCCCCChhhhhhhhhhHHHHHHHHH
Q 020839          203 TMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVR  282 (320)
Q Consensus       203 ~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~  282 (320)
                      .++...    ..+..+|.|..++..+.++||.+|..+|..+......                     ......+...|+
T Consensus       510 ~~~~~~----~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~---------------------~~~~~~i~~~l~  564 (588)
T d1b3ua_         510 VCGQDI----TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN---------------------STLQSEVKPILE  564 (588)
T ss_dssp             HHHHHH----HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH---------------------HHHHHHHHHHHH
T ss_pred             HcChHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc---------------------HhHHHHHHHHHH
Confidence            665432    2357899999999999999999999999998665221                     112356777788


Q ss_pred             HHHhh
Q 020839          283 NLSVE  287 (320)
Q Consensus       283 ~La~d  287 (320)
                      .|.+|
T Consensus       565 ~L~~D  569 (588)
T d1b3ua_         565 KLTQD  569 (588)
T ss_dssp             HHTTC
T ss_pred             HHcCC
Confidence            88776
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure