Citrus Sinensis ID: 020976

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHcccccEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
micgdltpctaTFNIMLNglcknrytDNALRMFRGlqkhgfvpelVTYNILIKGLCKAGRLRTARWILKElgdsghapnaiTYTTIMKccfrnrkyKLGLEILSAMKRkgytfdgfGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKqgfecdkythTILIDGLCKAGNIKGARLHLEYMNkigfdsnlEAYNCIVDrlgkdgkidhAINVFEsmevkdsfTYSSMVHNlckakrlpsASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH
Flexible Loop (DISEMBL)
micgdltpctATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKelgdsghapnaiTYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKavvdglrhsgcrreakkiqskirmakish
Low Complexity Region (SEG)
MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRlpsasklllsclksGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH
Disordered region (IsUnstruct)
**CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR**********************
Disordered Region (DISOPRED)
***GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI**
Disordered Region (DISEMBL)
MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH*********************
Disordered Region (DISPRO)
****DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
P0C043	463	Putative pentatricopeptid	yes	no	0.981	0.676	0.5	6e-88
Q56XR6	468	Pentatricopeptide repeat-	yes	no	0.968	0.660	0.475	3e-80
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.952	0.508	0.285	2e-38
Q9LR67	660	Pentatricopeptide repeat-	no	no	0.833	0.403	0.315	2e-38
Q9LVQ5	1096	Pentatricopeptide repeat-	no	no	0.789	0.229	0.332	4e-38
Q9SR00	602	Pentatricopeptide repeat-	no	no	0.996	0.528	0.292	4e-38
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.905	0.383	0.292	6e-38
Q0WKZ3	523	Pentatricopeptide repeat-	no	no	0.965	0.588	0.310	2e-37
Q3ECK2	548	Pentatricopeptide repeat-	no	no	0.959	0.558	0.274	3e-36
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.965	0.421	0.299	9e-36

>sp|P0C043|PP318_ARATH Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1

 Score =  324 bits (830), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 157/314 (50%), Positives = 223/314 (71%), Gaps = 1/314 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N++L+ LCK  Y DNAL +F+ +Q   F PEL+TYNILI GLCK+ R+ TA+
Sbjct: 150 LNPGPDTYNVLLDALCKCGYIDNALELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAK 208

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+L EL  SG+ PNA+TYTTI+K  F+ R+ + GL++   MKR+GYT+DG+ Y  V++A 
Sbjct: 209 WMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSAL 268

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K GR KEA +YM+++V  G + DIVSYNTL+NLY K+G L+A   LL E+E++G + D+
Sbjct: 269 IKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADE 328

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YTHTI+++GL + G  + A  H   M ++G   NL   NC+VD L K G +D A+  FES
Sbjct: 329 YTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFES 388

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           MEVKD +TY+S+VHNLCK  R   ASKLLLSC   G++I  SA++AV+ GLR SGC  EA
Sbjct: 389 MEVKDEYTYTSVVHNLCKDMRFVCASKLLLSCYNKGIKIPTSARRAVLSGLRMSGCYGEA 448

Query: 306 KKIQSKIRMAKISH 319
           +K ++++++  + +
Sbjct: 449 RKAKAEMKLTLVGN 462

Arabidopsis thaliana (taxid: 3702)

>sp|Q56XR6|PP421_ARATH Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana GN=At5g46680 PE=2 SV=2

 Score =  298 bits (763), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/311 (47%), Positives = 216/311 (69%), Gaps = 2/311 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+NI+L+ LCK+ +TDNA+ +F+ L K    PEL+TYNILI GLCK+ R+ +  
Sbjct: 150 LVPGIDTYNILLDALCKSGHTDNAIELFKHL-KSRVKPELMTYNILINGLCKSRRVGSVD 208

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+++EL  SG+ PNA+TYTT++K  F+ ++ + GL++   MK++GYTFDGF  C V++A 
Sbjct: 209 WMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSAL 268

Query: 126 VKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           +K GR +EA + M ++V  G +  DIVSYNTL+NLY K+G L+A   LL+E+E +G + D
Sbjct: 269 IKTGRAEEAYECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPD 328

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
            YTHTI+++GL   GN  GA  HL  + ++G   ++   NC++D L K G +D A+ +F 
Sbjct: 329 DYTHTIIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFA 388

Query: 245 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 304
           SMEV+D FTY+S+VHNLCK  RL  ASKLLLSC   G++I  SA++AV+ G+R +   + 
Sbjct: 389 SMEVRDEFTYTSVVHNLCKDGRLVCASKLLLSCYNKGMKIPSSARRAVLSGIRETVSYQA 448

Query: 305 AKKIQSKIRMA 315
           A+K   KI+ A
Sbjct: 449 ARKTHIKIKAA 459

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 169/312 (54%), Gaps = 8/312 (2%)

Query: 7   TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
           TP   T+N+++NG+CK    D A++    +   G  P ++T+NI+++ +C  GR   A  
Sbjct: 271 TPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEK 330

Query: 67  ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAA 124
           +L ++   G +P+ +T+  ++   F  RK  LG  ++IL  M + G   +   Y  ++  
Sbjct: 331 LLADMLRKGFSPSVVTFNILIN--FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHG 388

Query: 125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           F K  ++  A +Y+E+MV+ G   DIV+YNT++   CK+GK+E A  +L+++  +G    
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448

Query: 185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
             T+  +IDGL KAG    A   L+ M       +   Y+ +V  L ++GK+D AI  F 
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508

Query: 245 SME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
             E      ++ T++S++  LCK+++   A   L+  +  G +  +++   +++GL + G
Sbjct: 509 EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEG 568

Query: 301 CRREAKKIQSKI 312
             +EA ++ +++
Sbjct: 569 MAKEALELLNEL 580

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 147/276 (53%), Gaps = 10/276 (3%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           + P   T+N ++NGL    + D+A R+F  ++     P++VTYN +IKG CKAG+ + A 
Sbjct: 218 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAM 277

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             L+++   GH  + ITY T+++ C+ +  +   + +   M  KG       +  VI   
Sbjct: 278 EKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGL 337

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
            K G+L E     E M+  G + ++  Y  LI+ Y K G +E A  LL  M  +GF+ D 
Sbjct: 338 CKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDV 397

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINV 242
            T++++++GLCK G ++ A   L+Y +   FD    N   Y+ ++D LGK G++D A  +
Sbjct: 398 VTYSVVVNGLCKNGRVEEA---LDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERL 454

Query: 243 FESMEVK----DSFTYSSMVHNLCKAKRLPSASKLL 274
           FE M  K    DS+ Y++++    K +++  A  L 
Sbjct: 455 FEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALF 490

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 146/256 (57%), Gaps = 4/256 (1%)

Query: 12  TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 71
           T+  M++GLCKN + D A+ +   + K G  P++VTY+ LI G CK GR +TA+ I+  +
Sbjct: 405 TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRI 464

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
              G +PN I Y+T++  C R    K  + I  AM  +G+T D F +  ++ +  K G++
Sbjct: 465 YRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKV 524

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
            EA ++M  M +DG+  + VS++ LIN Y   G+   A+ + DEM K G     +T+  L
Sbjct: 525 AEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSL 584

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---- 247
           + GLCK G+++ A   L+ ++ +    +   YN ++  + K G +  A+++F  M     
Sbjct: 585 LKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSI 644

Query: 248 VKDSFTYSSMVHNLCK 263
           + DS+TY+S++  LC+
Sbjct: 645 LPDSYTYTSLISGLCR 660

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 171/325 (52%), Gaps = 7/325 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+   L P   T+N ++ G+CK    D A  M R L+  G  P++++YNIL++ L   G+
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                 ++ ++      PN +TY+ ++    R+ K +  + +L  MK KG T D + Y  
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           +IAAF + GRL  A +++E M++DG   DIV+YNT++   CK GK + A  +  ++ + G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query: 181 FECDKYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
              +  ++  +   L  +G+ I+   + LE M+  G D +   YN ++  L ++G +D A
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSN-GIDPDEITYNSMISCLCREGMVDEA 492

Query: 240 INVFESM---EVKDS-FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +   M   E   S  TY+ ++   CKA R+  A  +L S + +G R  ++    +++G
Sbjct: 493 FELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552

Query: 296 LRHSGCRREAKKIQSK-IRMAKISH 319
           +  +G R EA ++ +  +R+  IS 
Sbjct: 553 IGFAGYRAEAMELANDLVRIDAISE 577

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  158 bits (399), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 158/328 (48%), Gaps = 39/328 (11%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P   TFN ++NGLCK  +  +A+ +   + + G+ P++ TYN +I GLCK G ++ A  +
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352

Query: 68  LKELGDSGHAPNAITYTTIMK---------------------------CCFRN------- 93
           L ++     +PN +TY T++                            C F +       
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412

Query: 94  -RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 152
            R +++ +E+   M+ KG   D F Y  +I +    G+L EA + ++QM   G    +++
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVIT 472

Query: 153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 212
           YNTLI+ +CK  K   A  + DEME  G   +  T+  LIDGLCK+  ++ A   ++ M 
Sbjct: 473 YNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 532

Query: 213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLP 268
             G   +   YN ++    + G I  A ++ ++M       D  TY +++  LCKA R+ 
Sbjct: 533 MEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE 592

Query: 269 SASKLLLSCLKSGVRILKSAQKAVVDGL 296
            ASKLL S    G+ +   A   V+ GL
Sbjct: 593 VASKLLRSIQMKGINLTPHAYNPVIQGL 620

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1

 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 156/312 (50%), Gaps = 4/312 (1%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P    +N ++NGLCKNR  +NAL +F  ++K G   + VTYN LI GL  +GR   A 
Sbjct: 180 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 239

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +L+++      PN I +T ++    +         +   M R+    + F Y ++I  F
Sbjct: 240 RLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGF 299

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              G L +A    + MV+ G   D+V+YNTLI  +CK  ++E    L  EM  QG   D 
Sbjct: 300 CIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDA 359

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           +T+  LI G C+AG +  A+     M   G   ++  YN ++D L  +GKI+ A+ + E 
Sbjct: 360 FTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVED 419

Query: 246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 301
           ++      D  TY+ ++  LC+  +L  A  L  S  + GV+    A   ++ GL   G 
Sbjct: 420 LQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGL 479

Query: 302 RREAKKIQSKIR 313
           +REA K+  +++
Sbjct: 480 QREADKLCRRMK 491

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2

 Score =  152 bits (384), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 153/310 (49%), Gaps = 4/310 (1%)

Query: 8   PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
           P    +N +++ LCK +  ++A   F+ +++ G  P +VTY  L+ GLC + R   A  +
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247

Query: 68  LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
           L ++      PN ITY+ ++    +N K     E+   M R     D   Y ++I     
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 307

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
             R+ EA    + MV+ G   D+VSYNTLIN +CK  ++E    L  EM ++G   +  T
Sbjct: 308 HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVT 367

Query: 188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
           +  LI G  +AG++  A+     M+  G   ++  YN ++  L  +G+++ A+ +FE M+
Sbjct: 368 YNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 427

Query: 248 VK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
            +    D  TY++++  +CK  ++  A  L  S    G++        ++ GL   G   
Sbjct: 428 KREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLH 487

Query: 304 EAKKIQSKIR 313
           E + + +K++
Sbjct: 488 EVEALYTKMK 497

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score =  150 bits (380), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 159/317 (50%), Gaps = 9/317 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           M+     P   T+  ++NGLCK    D A  +F  + K    PE+V +N LI G    GR
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGR 368

Query: 61  LRTARWILKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
           L  A+ +L ++  S G  P+  TY +++   ++     L LE+L  M+ KG   + + Y 
Sbjct: 369 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYT 428

Query: 120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
            ++  F K+G++ EA + + +M  DG++ + V +N LI+ +CKE ++  A  +  EM ++
Sbjct: 429 ILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 488

Query: 180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
           G + D YT   LI GLC+   IK A   L  M   G  +N   YN +++   + G+I  A
Sbjct: 489 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
             +   M  +    D  TY+S++  LC+A  +  A  L    L+ G      +   +++G
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608

Query: 296 LRHSGCRREAKKIQSKI 312
           L  SG   EA + Q ++
Sbjct: 609 LCRSGMVEEAVEFQKEM 625

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
255584082	487	pentatricopeptide repeat-containing prot	0.971	0.636	0.649	1e-123
225454807	457	PREDICTED: putative pentatricopeptide re	0.987	0.689	0.633	1e-118
297737331	441	unnamed protein product [Vitis vinifera]	0.927	0.671	0.633	1e-118
356506793	461	PREDICTED: putative pentatricopeptide re	0.946	0.655	0.612	1e-112
147832566	457	hypothetical protein VITISV_010038 [Viti	0.912	0.636	0.644	1e-111
224089585	454	predicted protein [Populus trichocarpa]	0.962	0.676	0.612	1e-109
449467965	456	PREDICTED: putative pentatricopeptide re	0.978	0.684	0.598	1e-109
357503117	457	Pentatricopeptide repeat-containing prot	0.974	0.680	0.569	1e-107
449451938	460	PREDICTED: putative pentatricopeptide re	0.987	0.684	0.492	6e-89
68566156	463	RecName: Full=Putative pentatricopeptide	0.981	0.676	0.5	3e-86

>gi|255584082|ref|XP_002532784.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527472|gb|EEF29603.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 204/314 (64%), Positives = 262/314 (83%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+PC  TFNIM+NGLCKN +T NAL +FR L++HGFVP+L+TYNILI GLCK  RLR AR
Sbjct: 173 LSPCPTTFNIMINGLCKNGFTSNALMLFRSLKQHGFVPQLITYNILINGLCKDRRLRAAR 232

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +LKEL  SG+ PNAITYTT+MK CFR+R++K GLEIL  M  KGYTFDGF YCTV+   
Sbjct: 233 SMLKELETSGYVPNAITYTTVMKFCFRSRRFKQGLEILQEMIDKGYTFDGFAYCTVVGVL 292

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K GRL+EAT+YM QM+ +G++ D+ SYNTLINLYCK+G LEAAY LLDE+EK+G +CD+
Sbjct: 293 IKTGRLEEATEYMRQMIKNGIEHDLASYNTLINLYCKQGNLEAAYQLLDEIEKEGLQCDE 352

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YTHTILI+ +CKAGNI GAR H+++MN +GFDS L A NC+VD L K+G+IDHA+ +FES
Sbjct: 353 YTHTILINWMCKAGNILGARRHMQHMNMMGFDSCLVALNCMVDGLCKNGQIDHAVKLFES 412

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           M+++DSFTYSS+VHNLCK  R   ASKLLLSCL+SG++IL SAQ+ V+ GLR+SG ++EA
Sbjct: 413 MKMRDSFTYSSLVHNLCKNGRFHRASKLLLSCLRSGMKILPSAQRVVISGLRYSGFQKEA 472

Query: 306 KKIQSKIRMAKISH 319
           +K++SKI++A++ H
Sbjct: 473 RKLKSKIKLARMLH 486

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454807|ref|XP_002274300.1| PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Vitis vinifera]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/319 (63%), Positives = 256/319 (80%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I  +L P ++TFNIM+NGLC N YT  AL ++R LQ+ GFVPELVTYNILI GLCK+ +
Sbjct: 138 IILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRK 197

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR IL+ELG+SG+ P+AITYTT+MKCCFR+R+++ G EI S MK KGY FD F YC 
Sbjct: 198 LNAARRILRELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCA 257

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VIAA  K GRL+EA D MEQM    + LDIVSYNT++NLYC+ GKLEA Y LLDE+E+ G
Sbjct: 258 VIAALTKTGRLEEANDIMEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHG 317

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            ECD+YTHTILIDGLCKAGN++GA  HL+ M K+GFDS L A NC++D L K G++DHAI
Sbjct: 318 LECDEYTHTILIDGLCKAGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAI 377

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +F SMEVKDSFTYSSMVHNLCKA+R   AS+LLL+CL+ G++IL++ Q++V+DGL +SG
Sbjct: 378 KMFASMEVKDSFTYSSMVHNLCKARRYRHASRLLLACLRGGMKILRANQRSVIDGLCYSG 437

Query: 301 CRREAKKIQSKIRMAKISH 319
              EA++++SKIR+A+I H
Sbjct: 438 YTSEARRLKSKIRLARILH 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737331|emb|CBI26532.3| unnamed protein product [Vitis vinifera]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/319 (63%), Positives = 256/319 (80%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I  +L P ++TFNIM+NGLC N YT  AL ++R LQ+ GFVPELVTYNILI GLCK+ +
Sbjct: 122 IILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRK 181

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR IL+ELG+SG+ P+AITYTT+MKCCFR+R+++ G EI S MK KGY FD F YC 
Sbjct: 182 LNAARRILRELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCA 241

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VIAA  K GRL+EA D MEQM    + LDIVSYNT++NLYC+ GKLEA Y LLDE+E+ G
Sbjct: 242 VIAALTKTGRLEEANDIMEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHG 301

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            ECD+YTHTILIDGLCKAGN++GA  HL+ M K+GFDS L A NC++D L K G++DHAI
Sbjct: 302 LECDEYTHTILIDGLCKAGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAI 361

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +F SMEVKDSFTYSSMVHNLCKA+R   AS+LLL+CL+ G++IL++ Q++V+DGL +SG
Sbjct: 362 KMFASMEVKDSFTYSSMVHNLCKARRYRHASRLLLACLRGGMKILRANQRSVIDGLCYSG 421

Query: 301 CRREAKKIQSKIRMAKISH 319
              EA++++SKIR+A+I H
Sbjct: 422 YTSEARRLKSKIRLARILH 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506793|ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Glycine max]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/307 (61%), Positives = 246/307 (80%)

Query: 11  ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 70
           AT+NIM+NGLCKN Y  NAL +FR LQ+HGFVP+++TYN LI GLCKA RL+ AR +LKE
Sbjct: 153 ATYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYNALINGLCKARRLKDARRVLKE 212

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
            G++G+ PNA+TYTT+M CCFR R ++ GLEILS M+  G+TFDGF YCTVIAA +K GR
Sbjct: 213 FGETGNEPNAVTYTTVMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGR 272

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           ++EA + +E MV+ GV+ D+VSYNTLINLYC++G+L+ A  LLDE+E +G ECD+YTHTI
Sbjct: 273 MQEAEEIVEMMVSSGVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTI 332

Query: 191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD 250
           ++DGLCKAGN  GA+ HL YMN +GF SNL A+NC +D LGK G IDHA+ +FE MEVKD
Sbjct: 333 IVDGLCKAGNFDGAQRHLNYMNSLGFGSNLVAFNCFLDGLGKAGHIDHALRLFEVMEVKD 392

Query: 251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS 310
           SFTY+ +VHNLC+A+R   ASK+L+SCLK G ++L++ Q+AV+ GLR  G   EA+K++ 
Sbjct: 393 SFTYTIVVHNLCRARRFLCASKVLVSCLKCGYQVLRATQRAVIVGLRSIGYANEARKVKL 452

Query: 311 KIRMAKI 317
            IR+A+ 
Sbjct: 453 TIRLAQF 459

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832566|emb|CAN63846.1| hypothetical protein VITISV_010038 [Vitis vinifera]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/295 (64%), Positives = 237/295 (80%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I  +L P ++TFNIM+NGLC N YT  AL ++R LQ+ GFVPELVTYNILI GLCK+ +
Sbjct: 138 IILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRK 197

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           L  AR IL+ELG+SG+ P+AITYTT+MKCCFR+R+++ G EI S MK KGY FD F YC 
Sbjct: 198 LNAARRILRELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCA 257

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           VIAA  K GRL+EA D MEQM    + LDIVSYNT++NLYC+ GKLEA Y LLDE+E+ G
Sbjct: 258 VIAALTKTGRLEEANDIMEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHG 317

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            ECD+YTHTILIDGLCKAGN++GA  HL+ M K+GFDS L A NC++D L K G++DHAI
Sbjct: 318 LECDEYTHTILIDGLCKAGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAI 377

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
            +F SMEVKDSFTYSSMVHNLCKA+R   AS+LLL+CL+ G++IL++ Q++V+DG
Sbjct: 378 KMFASMEVKDSFTYSSMVHNLCKARRYRHASRLLLACLRGGMKILRANQRSVIDG 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089585|ref|XP_002308767.1| predicted protein [Populus trichocarpa] gi|222854743|gb|EEE92290.1| predicted protein [Populus trichocarpa]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/310 (61%), Positives = 248/310 (80%), Gaps = 3/310 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L+P  AT+N MLNGLCK  + +NAL +FR L++HGFVP LVTYNILI GLCKA +L+TAR
Sbjct: 143 LSPSQATYNTMLNGLCKCGFVENALMLFRKLKRHGFVPSLVTYNILINGLCKAWKLKTAR 202

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+LKELG SG  PN ITYTT+M+CCFR+R+++ GLEI   M  KGYTFDGF YCTV+ A 
Sbjct: 203 WMLKELGASGLVPNVITYTTVMRCCFRSRRFEQGLEIFEEMIDKGYTFDGFAYCTVVGAL 262

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           VK  R++EA+ YME+MV   + LD+ SYNTLINLYCK GKLE A+ +LD+MEK+GFE D+
Sbjct: 263 VKTCRIEEASHYMERMVNTDIGLDMASYNTLINLYCKGGKLEMAHGVLDKMEKEGFERDE 322

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YT+TIL++GLC+ G+++GA   +EYMN  GF+SNL A N +VDR  K  +ID+A  +F+S
Sbjct: 323 YTNTILMNGLCEEGDVEGA---MEYMNVAGFNSNLVALNTMVDRWCKADQIDYAFKIFDS 379

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           M+++DSFTYSS++HNLCK  R   ASKLLLSC++S  RIL SA++AV D LRHSG +REA
Sbjct: 380 MDMRDSFTYSSLIHNLCKVGRFRCASKLLLSCVRSRTRILPSAKRAVFDCLRHSGHQREA 439

Query: 306 KKIQSKIRMA 315
           K+++S+I++A
Sbjct: 440 KRLKSEIKLA 449

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467965|ref|XP_004151692.1| PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Cucumis sativus] gi|449468117|ref|XP_004151768.1| PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Cucumis sativus] gi|449532400|ref|XP_004173169.1| PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Cucumis sativus]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 241/316 (76%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
           +I  DL+P   TFN M+NGLCK+ YT NA+ +FR LQ+HGF+P+LVTYNILI GLCK  R
Sbjct: 138 IILKDLSPHPVTFNTMINGLCKHGYTSNAIMLFRNLQRHGFIPQLVTYNILINGLCKVDR 197

Query: 61  LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
           LR A  +L E  DSG  PNA+TYTT+MK CFR+R+Y+ G EI S MK KGY FDGF YCT
Sbjct: 198 LRAAIRMLNEAMDSGLEPNAVTYTTLMKSCFRSRQYERGFEIFSKMKNKGYAFDGFAYCT 257

Query: 121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
           V  AF+K+GR +EA   MEQM+ + V +DI  YNT INLYCKEGKLEAAY L DE+E +G
Sbjct: 258 VSGAFLKLGRFEEAKFCMEQMIKNDVGIDITFYNTFINLYCKEGKLEAAYKLFDEIEPRG 317

Query: 181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
            ECD YTH+I+ +GLC+ GNI+GA  HL  +   GF SNL A NC++DRL K G+ID AI
Sbjct: 318 LECDVYTHSIITNGLCRVGNIEGAMQHLNCVYTTGFASNLVALNCLIDRLCKAGQIDRAI 377

Query: 241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 300
            +FESME +DSFTY+S+VHNLCKA+R   ASKLL+SC + G+++LK+ ++AV+DGL  SG
Sbjct: 378 RLFESMETRDSFTYTSLVHNLCKARRFRCASKLLISCSRDGMKVLKATRRAVIDGLCSSG 437

Query: 301 CRREAKKIQSKIRMAK 316
              EA+K++ K+R+A+
Sbjct: 438 FTSEARKLKFKLRLAR 453

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/316 (56%), Positives = 247/316 (78%)

Query: 4   GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT 63
           G++ P  A++N+M+NGLCKN Y +NAL +FR L++ GFVPE++TYN +I GLCKA RL  
Sbjct: 142 GEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARRLAD 201

Query: 64  ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 123
           AR +L E  D G  PNAITYTT+MKCCFR  + + GLEILS M+RKG+TFDGF YCTV+A
Sbjct: 202 ARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVA 261

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 183
           A VK GR++EA +  E+M+++G+  D+ SYNT+INL+C++G+ + A  L+DE+EKQG +C
Sbjct: 262 ALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKC 321

Query: 184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 243
           D+YTHTI+I GLCK GN +GA  HL+YMN +GF  NL A+N I+D LGK G ID A+ VF
Sbjct: 322 DQYTHTIIIHGLCKDGNFEGAEKHLDYMNTLGFGFNLVAFNSILDCLGKAGDIDKAVKVF 381

Query: 244 ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 303
           +SMEVKDSFTY+S++HNLC+AK+   ASKLL++ ++ G +IL++ Q+AV+DGL  SG   
Sbjct: 382 DSMEVKDSFTYTSLLHNLCRAKKFRIASKLLVASIEDGFQILRATQRAVIDGLTTSGLVY 441

Query: 304 EAKKIQSKIRMAKISH 319
           EA+K++ KI+ A++ H
Sbjct: 442 EARKVKLKIQRARLVH 457

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451938|ref|XP_004143717.1| PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Cucumis sativus]

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 159/323 (49%), Positives = 221/323 (68%), Gaps = 8/323 (2%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
            I  D +P  ATF++M+ G C   YT NA+ +FR LQ HG VP+ VTY+IL+ GLCKA R
Sbjct: 138 FILKDHSPNPATFDVMIFGFCSCGYTSNAITLFRNLQSHGLVPKFVTYDILLTGLCKAAR 197

Query: 61  LRT-------ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF 113
           L         A  +  E  DSG  P++ TY  +MKCCF+ R+Y+ G EI   MK KG  F
Sbjct: 198 LNVSVSMFNEAMSMFNEAIDSGFEPDSTTYIALMKCCFKFREYQHGFEIFFEMKNKGLAF 257

Query: 114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
           +GFGY T I A +++GRL+EA  +M +M+ +GV  ++V YNT++NLYCK GKLEAA+ +L
Sbjct: 258 NGFGYYTAIGALLRLGRLEEAKFFMVEMIKNGVVFNLVFYNTVVNLYCKHGKLEAAHKML 317

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DSNLEAYNCIVDRLGK 232
           D++E +G +C+ YTH I+ DGLCK GN +GAR HL Y+   GF +SN+ A +C++DRL K
Sbjct: 318 DKIESRGLQCNDYTHAIITDGLCKVGNFEGARRHLNYIYPTGFTNSNVVASSCLIDRLCK 377

Query: 233 DGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 292
            G+ID A+ +FE ME KD + Y+S++HNLCKA+R   ASKLLL CL+SG+ + +S Q AV
Sbjct: 378 AGQIDQAMQLFELMETKDPYVYTSLMHNLCKARRFLCASKLLLDCLRSGISVFRSTQCAV 437

Query: 293 VDGLRHSGCRREAKKIQSKIRMA 315
           + GL   G   EA+K++  I ++
Sbjct: 438 IFGLCSFGFTSEARKLKPFIHLS 460

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|68566156|sp|P0C043.1|PP318_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At4g17915

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 157/314 (50%), Positives = 223/314 (71%), Gaps = 1/314 (0%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P   T+N++L+ LCK  Y DNAL +F+ +Q   F PEL+TYNILI GLCK+ R+ TA+
Sbjct: 150 LNPGPDTYNVLLDALCKCGYIDNALELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAK 208

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
           W+L EL  SG+ PNA+TYTTI+K  F+ R+ + GL++   MKR+GYT+DG+ Y  V++A 
Sbjct: 209 WMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSAL 268

Query: 126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
           +K GR KEA +YM+++V  G + DIVSYNTL+NLY K+G L+A   LL E+E++G + D+
Sbjct: 269 IKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADE 328

Query: 186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 245
           YTHTI+++GL + G  + A  H   M ++G   NL   NC+VD L K G +D A+  FES
Sbjct: 329 YTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFES 388

Query: 246 MEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 305
           MEVKD +TY+S+VHNLCK  R   ASKLLLSC   G++I  SA++AV+ GLR SGC  EA
Sbjct: 389 MEVKDEYTYTSVVHNLCKDMRFVCASKLLLSCYNKGIKIPTSARRAVLSGLRMSGCYGEA 448

Query: 306 KKIQSKIRMAKISH 319
           +K ++++++  + +
Sbjct: 449 RKAKAEMKLTLVGN 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
TAIR|locus:2178550	468	AT5G46680 "AT5G46680" [Arabido	0.968	0.660	0.446	2.9e-71
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.952	0.508	0.282	1.3e-37
TAIR|locus:2020808	660	AT1G03560 [Arabidopsis thalian	0.808	0.390	0.317	1.4e-36
TAIR|locus:2084978	602	AT3G04760 [Arabidopsis thalian	0.993	0.526	0.283	2e-36
TAIR|locus:2174165	504	AT5G16640 [Arabidopsis thalian	0.959	0.607	0.296	2e-33
TAIR|locus:2026207	548	AT1G62680 [Arabidopsis thalian	0.959	0.558	0.264	5.5e-33
TAIR|locus:1009023134	644	AT1G12775 [Arabidopsis thalian	0.943	0.467	0.285	1.1e-32
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.811	0.346	0.285	1.5e-32
TAIR|locus:2173403	730	AT5G64320 "AT5G64320" [Arabido	0.962	0.420	0.295	1.8e-32
TAIR|locus:2009997	826	AT1G13630 "AT1G13630" [Arabido	0.815	0.314	0.329	2.5e-32

TAIR|locus:2178550 AT5G46680 "AT5G46680" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 139/311 (44%), Positives = 207/311 (66%)

Query:     6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             L P   T+NI+L+ LCK+ +TDNA+ +F+ L K    PEL+TYNILI GLCK+ R+ +  
Sbjct:   150 LVPGIDTYNILLDALCKSGHTDNAIELFKHL-KSRVKPELMTYNILINGLCKSRRVGSVD 208

Query:    66 WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
             W+++EL  SG+ PNA+TYTT++K  F+ ++ + GL++   MK++GYTFDGF  C V++A 
Sbjct:   209 WMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSAL 268

Query:   126 VKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             +K GR +EA + M ++V  G +  DIVSYNTL+NLY K+G L+A   LL+E+E +G + D
Sbjct:   269 IKTGRAEEAYECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPD 328

Query:   185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
              YTHTI+++GL   GN  GA  HL  + ++G   ++   NC++D L K G +D A+ +F 
Sbjct:   329 DYTHTIIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFA 388

Query:   245 SMEVKDSFTYSSMVHNLCKAKRXXXXXXXXXXXXXXGVRILKSAQKAVVDGLRHSGCRRE 304
             SMEV+D FTY+S+VHNLCK  R              G++I  SA++AV+ G+R +   + 
Sbjct:   389 SMEVRDEFTYTSVVHNLCKDGRLVCASKLLLSCYNKGMKIPSSARRAVLSGIRETVSYQA 448

Query:   305 AKKIQSKIRMA 315
             A+K   KI+ A
Sbjct:   449 ARKTHIKIKAA 459

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 1.3e-37, P = 1.3e-37
 Identities = 88/312 (28%), Positives = 168/312 (53%)

Query:     7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 66
             TP   T+N+++NG+CK    D A++    +   G  P ++T+NI+++ +C  GR   A  
Sbjct:   271 TPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEK 330

Query:    67 ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAA 124
             +L ++   G +P+ +T+  ++   F  RK  LG  ++IL  M + G   +   Y  ++  
Sbjct:   331 LLADMLRKGFSPSVVTFNILIN--FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHG 388

Query:   125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
             F K  ++  A +Y+E+MV+ G   DIV+YNT++   CK+GK+E A  +L+++  +G    
Sbjct:   389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448

Query:   185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF- 243
               T+  +IDGL KAG    A   L+ M       +   Y+ +V  L ++GK+D AI  F 
Sbjct:   449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508

Query:   244 --ESMEVK-DSFTYSSMVHNLCKAKRXXXXXXXXXXXXXXGVRILKSAQKAVVDGLRHSG 300
               E M ++ ++ T++S++  LCK+++              G +  +++   +++GL + G
Sbjct:   509 EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEG 568

Query:   301 CRREAKKIQSKI 312
               +EA ++ +++
Sbjct:   569 MAKEALELLNEL 580

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2020808 AT1G03560 [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 1.4e-36, P = 1.4e-36
 Identities = 85/268 (31%), Positives = 144/268 (53%)

Query:     6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             + P   T+N ++NGL    + D+A R+F  ++     P++VTYN +IKG CKAG+ + A 
Sbjct:   218 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAM 277

Query:    66 WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
               L+++   GH  + ITY T+++ C+ +  +   + +   M  KG       +  VI   
Sbjct:   278 EKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGL 337

Query:   126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              K G+L E     E M+  G + ++  Y  LI+ Y K G +E A  LL  M  +GF+ D 
Sbjct:   338 CKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDV 397

Query:   186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINV 242
              T++++++GLCK G ++ A   L+Y +   FD    N   Y+ ++D LGK G++D A  +
Sbjct:   398 VTYSVVVNGLCKNGRVEEA---LDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERL 454

Query:   243 FESMEVK----DSFTYSSMVHNLCKAKR 266
             FE M  K    DS+ Y++++    K ++
Sbjct:   455 FEEMSEKGCTRDSYCYNALIDAFTKHRK 482

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 2.0e-36, P = 2.0e-36
 Identities = 92/324 (28%), Positives = 164/324 (50%)

Query:     1 MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
             M+   L P   T+N ++ G+CK    D A  M R L+  G  P++++YNIL++ L   G+
Sbjct:   254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313

Query:    61 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
                   ++ ++      PN +TY+ ++    R+ K +  + +L  MK KG T D + Y  
Sbjct:   314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373

Query:   121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 180
             +IAAF + GRL  A +++E M++DG   DIV+YNT++   CK GK + A  +  ++ + G
Sbjct:   374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query:   181 FECDKYTHTILIDGLCKAGN-IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                +  ++  +   L  +G+ I+   + LE M+  G D +   YN ++  L ++G +D A
Sbjct:   434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSN-GIDPDEITYNSMISCLCREGMVDEA 492

Query:   240 INVFESM---EVKDSF-TYSSMVHNLCKAKRXXXXXXXXXXXXXXGVRILKSAQKAVVDG 295
               +   M   E   S  TY+ ++   CKA R              G R  ++    +++G
Sbjct:   493 FELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552

Query:   296 LRHSGCRREAKKIQSK-IRMAKIS 318
             +  +G R EA ++ +  +R+  IS
Sbjct:   553 IGFAGYRAEAMELANDLVRIDAIS 576

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 92/310 (29%), Positives = 145/310 (46%)

Query:     8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
             P    +N +++GLCK++  DNAL +   ++K G  P++VTYN LI GLC +GR   A  +
Sbjct:   184 PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRM 243

Query:    68 LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             +  +      P+  T+  ++  C +  +     E    M R+    D   Y  +I     
Sbjct:   244 VSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCM 303

Query:   128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
               RL EA +    MV+ G   D+V+Y+ LIN YCK  K+E    L  EM ++G   +  T
Sbjct:   304 YSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVT 363

Query:   188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             +TILI G C+AG +  A      M   G   N+  YN ++  L  +GKI+ A+ +   M+
Sbjct:   364 YTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQ 423

Query:   248 VK----DSFTYSSMVHNLCKAKRXXXXXXXXXXXXXXGVRILKSAQKAVVDGLRHSGCRR 303
                   D  TY+ ++  +CKA                G+         ++ GL   G RR
Sbjct:   424 KNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRR 483

Query:   304 EAKKIQSKIR 313
             EA  +  K++
Sbjct:   484 EADALFRKMK 493

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 5.5e-33, P = 5.5e-33
 Identities = 82/310 (26%), Positives = 149/310 (48%)

Query:     8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
             P    +N +++ LCK +  ++A   F+ +++ G  P +VTY  L+ GLC + R   A  +
Sbjct:   188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247

Query:    68 LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             L ++      PN ITY+ ++    +N K     E+   M R     D   Y ++I     
Sbjct:   248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 307

Query:   128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
               R+ EA    + MV+ G   D+VSYNTLIN +CK  ++E    L  EM ++G   +  T
Sbjct:   308 HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVT 367

Query:   188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             +  LI G  +AG++  A+     M+  G   ++  YN ++  L  +G+++ A+ +FE M+
Sbjct:   368 YNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 427

Query:   248 VK----DSFTYSSMVHNLCKAKRXXXXXXXXXXXXXXGVRILKSAQKAVVDGLRHSGCRR 303
              +    D  TY++++  +CK  +              G++        ++ GL   G   
Sbjct:   428 KREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLH 487

Query:   304 EAKKIQSKIR 313
             E + + +K++
Sbjct:   488 EVEALYTKMK 497

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 87/305 (28%), Positives = 143/305 (46%)

Query:     8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
             P T  FN +LNGLC       AL +   + + G  P L+T N L+ GLC  G++  A  +
Sbjct:   156 PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVL 215

Query:    68 LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             +  + ++G  PN +TY  ++    ++ +  L +E+L  M+ +    D   Y  +I    K
Sbjct:   216 IDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275

Query:   128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              G L  A +   +M   G + DI++YNTLI  +C  G+ +    LL +M K+    +  T
Sbjct:   276 DGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVT 335

Query:   188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
              ++LID   K G ++ A   L+ M + G   N   YN ++D   K+ +++ AI + + M 
Sbjct:   336 FSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI 395

Query:   248 VK----DSFTYSSMVHNLCKAKRXXXXXXXXXXXXXXGVRILKSAQKAVVDGLRHSGCRR 303
              K    D  T++ +++  CKA R              GV         +V G   SG   
Sbjct:   396 SKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLE 455

Query:   304 EAKKI 308
              AKK+
Sbjct:   456 VAKKL 460

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 1.5e-32, P = 1.5e-32
 Identities = 75/263 (28%), Positives = 140/263 (53%)

Query:     8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 67
             P   T+N +++G CK R  D+  ++ R +   G  P L++YN++I GLC+ GR++   ++
Sbjct:   238 PNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFV 297

Query:    68 LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             L E+   G++ + +TY T++K   +   +   L + + M R G T     Y ++I +  K
Sbjct:   298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCK 357

Query:   128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 187
              G +  A ++++QM   G+  +  +Y TL++ + ++G +  AY +L EM   GF     T
Sbjct:   358 AGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVT 417

Query:   188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 247
             +  LI+G C  G ++ A   LE M + G   ++ +Y+ ++    +   +D A+ V   M 
Sbjct:   418 YNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMV 477

Query:   248 VK----DSFTYSSMVHNLCKAKR 266
              K    D+ TYSS++   C+ +R
Sbjct:   478 EKGIKPDTITYSSLIQGFCEQRR 500

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 94/318 (29%), Positives = 157/318 (49%)

Query:     1 MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
             M+     P   T+  ++NGLCK    D A  +F  + K    PE+V +N LI G    GR
Sbjct:   313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGR 368

Query:    61 LRTARWILKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
             L  A+ +L ++  S G  P+  TY +++   ++     L LE+L  M+ KG   + + Y 
Sbjct:   369 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYT 428

Query:   120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
              ++  F K+G++ EA + + +M  DG++ + V +N LI+ +CKE ++  A  +  EM ++
Sbjct:   429 ILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 488

Query:   180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
             G + D YT   LI GLC+   IK A   L  M   G  +N   YN +++   + G+I  A
Sbjct:   489 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548

Query:   240 ---IN--VFESMEVKDSFTYSSMVHNLCKAKRXXXXXXXXXXXXXXGVRILKSAQKAVVD 294
                +N  VF+   + D  TY+S++  LC+A                G      +   +++
Sbjct:   549 RKLVNEMVFQGSPL-DEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILIN 607

Query:   295 GLRHSGCRREAKKIQSKI 312
             GL  SG   EA + Q ++
Sbjct:   608 GLCRSGMVEEAVEFQKEM 625

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009997 AT1G13630 "AT1G13630" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-32, P = 2.5e-32
 Identities = 89/270 (32%), Positives = 145/270 (53%)

Query:     3 CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR 62
             CG L P   + NI++NGLC       AL +   + KHG  P+ VTYNIL KG    G + 
Sbjct:   293 CG-LVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMIS 351

Query:    63 TARWILKELGDSGHAPNAITYTTIM--KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 120
              A  +++++ D G +P+ ITYT ++  +C   N    +GL +L  M  +G+  +    C+
Sbjct:   352 GAWEVIRDMLDKGLSPDVITYTILLCGQCQLGN--IDMGLVLLKDMLSRGFELNSIIPCS 409

Query:   121 V-IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 179
             V ++   K GR+ EA     QM  DG+  D+V+Y+ +I+  CK GK + A  L DEM  +
Sbjct:   410 VMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDK 469

Query:   180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
                 +  TH  L+ GLC+ G +  AR  L+ +   G   ++  YN ++D   K G I+ A
Sbjct:   470 RILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEA 529

Query:   240 INVFESM-E--VKDSF-TYSSMVHNLCKAK 265
             + +F+ + E  +  S  T++S+++  CK +
Sbjct:   530 LELFKVVIETGITPSVATFNSLIYGYCKTQ 559

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VI000067 hypothetical protein (454 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	319
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-19
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-17
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-14
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-11
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-10
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-10
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-08
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-07
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	8e-07
pfam01535	31	pfam01535, PPR, PPR repeat	1e-06
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-05
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	9e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-04
pfam01535	31	pfam01535, PPR, PPR repeat	3e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	3e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.001
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.002
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
pfam01535	31	pfam01535, PPR, PPR repeat	0.002
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.003

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 78.2 bits (194), Expect = 8e-19
 Identities = 29/49 (59%), Positives = 41/49 (83%)

Query: 149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
           D+V+YNTLI+ YCK+GK+E A  L +EM+K+G + + YT++ILIDGLCK
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 83.0 bits (205), Expect = 1e-17
 Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 17/240 (7%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPE--LVTYNILIKGLCKAGRLRTARWILKE- 70
           N ++    K +  D AL +F        +PE  ++++  +I GL    R   A    ++ 
Sbjct: 428 NALIEMYSKCKCIDKALEVFH------NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481

Query: 71  LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 130
           L      PN++T    +  C R      G EI + + R G  FDGF    ++  +V+ GR
Sbjct: 482 LLTL--KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539

Query: 131 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 190
           +  A +          + D+VS+N L+  Y   GK   A  L + M + G   D+ T   
Sbjct: 540 MNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594

Query: 191 LIDGLCKAGNIKGARLHLEYM-NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 249
           L+    ++G +     +   M  K     NL+ Y C+VD LG+ GK+  A N    M + 
Sbjct: 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT 654

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 75.3 bits (185), Expect = 5e-15
 Identities = 64/283 (22%), Positives = 126/283 (44%), Gaps = 12/283 (4%)

Query: 28  NALRMFRGLQKHGFVPE--LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 85
           +A R+F  +      PE  L ++  +I GL  AG  R A  + +E+ + G      T+  
Sbjct: 176 DARRLFDEM------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV 229

Query: 86  IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 145
           +++        + G ++   + + G   D F  C +I  + K G +++A    + M    
Sbjct: 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--- 286

Query: 146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 205
            +   V++N+++  Y   G  E A  L  EM   G   D++T +I+I    +   ++ A+
Sbjct: 287 -EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345

Query: 206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAK 265
                + + GF  ++ A   +VD   K G+++ A NVF+ M  K+  ++++++       
Sbjct: 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG 405

Query: 266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 308
           R   A ++    +  GV        AV+   R+SG   +  +I
Sbjct: 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 64.7 bits (159), Expect = 6e-14
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 8  PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 57
          P   T+N +++G CK    + AL++F  ++K G  P + TY+ILI GLCK
Sbjct: 1  PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 69.5 bits (170), Expect = 5e-13
 Identities = 58/270 (21%), Positives = 116/270 (42%), Gaps = 14/270 (5%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
             P  +TFN++++    ++  D ALR+ R +Q+ G   +   Y  LI    K+G++    
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF 125
            +  E+ ++G   N  T+  ++  C R  +          M+ K    D   +  +I+A 
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552

Query: 126 VKIGRLKEATDYMEQMV--TDGVQLDIVSYNTLINLYCKEGKLEAA---YLLLDEMEKQG 180
            + G +  A D + +M   T  +  D ++   L+      G+++ A   Y ++ E   +G
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612

Query: 181 F-ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 239
             E     +TI ++   + G+   A    + M K G   +   ++ +VD  G  G +D A
Sbjct: 613 TPEV----YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668

Query: 240 INVFESMEVK----DSFTYSSMVHNLCKAK 265
             + +    +     + +YSS++     AK
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAK 698

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 56.6 bits (138), Expect = 6e-11
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 90
          P++VTYN LI G CK G++  A  +  E+   G  PN  TY+ ++   
Sbjct: 1  PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 6/186 (3%)

Query: 78  PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 137
           P+ +T T+++  C      +LG E+   + + G+  D     ++I  ++ +G   EA   
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345

Query: 138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 197
             +M T     D VS+  +I+ Y K G  + A      ME+     D+ T   ++     
Sbjct: 346 FSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401

Query: 198 AGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSS 256
            G++  G +LH E   + G  S +   N +++   K   ID A+ VF ++  KD  +++S
Sbjct: 402 LGDLDVGVKLH-ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460

Query: 257 MVHNLC 262
           ++  L 
Sbjct: 461 IIAGLR 466

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 12/214 (5%)

Query: 49  NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR 108
           N  ++ LC  G+L  A  +L+ + +     +   Y  + + C   R  + G  + S    
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 168
              +        +++ FV+ G L  A     +M     + D+ S+N L+  Y K G  + 
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDE 170

Query: 169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI----KGARLHLEYMNKIGFDSNLEAYN 224
           A  L   M   G   D YT   +   L   G I    +G  +H   + + GF+ +++  N
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCV---LRTCGGIPDLARGREVHAHVV-RFGFELDVDVVN 226

Query: 225 CIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMV 258
            ++    K G +  A  VF+ M  +D  ++++M+
Sbjct: 227 ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMI 260

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 60.7 bits (147), Expect = 4e-10
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 17  LNGLCKN-RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 75
           L G C N +    AL ++  ++     P + T N LI  LC+  +L  A  +L E+   G
Sbjct: 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749

Query: 76  HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 110
             PN ITY+ ++    R     +GL++LS  K  G
Sbjct: 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 59/247 (23%), Positives = 107/247 (43%), Gaps = 12/247 (4%)

Query: 14  NIMLNGLCKNRYTDNALRMFRGLQKHGFVPE--LVTYNILIKGLCKAGRLRTARWILKEL 71
           N ML+   +     +A  +F      G +PE  L ++N+L+ G  KAG    A  +   +
Sbjct: 125 NAMLSMFVRFGELVHAWYVF------GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM 178

Query: 72  GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 131
             +G  P+  T+  +++ C        G E+ + + R G+  D      +I  +VK G +
Sbjct: 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238

Query: 132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 191
             A    ++M       D +S+N +I+ Y + G+      L   M +   + D  T T +
Sbjct: 239 VSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294

Query: 192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 251
           I      G+ +  R    Y+ K GF  ++   N ++      G    A  VF  ME KD+
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354

Query: 252 FTYSSMV 258
            ++++M+
Sbjct: 355 VSWTAMI 361

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 15/248 (6%)

Query: 43  PELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PNAITYTTIMKCCFRNRKYKLGL 100
           P+ V +N LI    ++G +  A  +L E+    H   P+ IT   +MK C    +     
Sbjct: 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599

Query: 101 EILSAMKRKGYTFDGFGYCTVIA--AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 158
           E+   +    Y   G      IA  +  + G    A    + M   GV+ D V ++ L++
Sbjct: 600 EVYQMIHE--YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657

Query: 159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 218
           +    G L+ A+ +L +  KQG +    +++ L+     A N K A    E +  I    
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717

Query: 219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS------FTYSSMVHNLCKAKRLPSASK 272
            +   N ++  L +  ++  A+ V    E+K         TY S++    + K       
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLS--EMKRLGLCPNTITY-SILLVASERKDDADVGL 774

Query: 273 LLLSCLKS 280
            LLS  K 
Sbjct: 775 DLLSQAKE 782

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 52.4 bits (127), Expect = 1e-09
 Identities = 17/34 (50%), Positives = 26/34 (76%)

Query: 144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 177
            G++ D+V+YNTLI+  C+ G+++ A  LLDEME
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.1 bits (121), Expect = 1e-08
 Identities = 14/47 (29%), Positives = 27/47 (57%)

Query: 116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
             Y T+I  + K G+++EA     +M   G++ ++ +Y+ LI+  CK
Sbjct: 4   VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 47.3 bits (114), Expect = 9e-08
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 40 GFVPELVTYNILIKGLCKAGRLRTARWILKE 70
          G  P++VTYN LI GLC+AGR+  A  +L E
Sbjct: 2  GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 43/217 (19%), Positives = 94/217 (43%), Gaps = 13/217 (5%)

Query: 27  DNALRMFRGLQKHGFVPE--LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 84
           ++A  +F G+      PE   V +N ++ G    G    A  +  E+ DSG + +  T++
Sbjct: 276 EDARCVFDGM------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329

Query: 85  TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 144
            +++   R    +   +  + + R G+  D      ++  + K GR+++A +  ++M   
Sbjct: 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM--- 386

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI-KG 203
             + +++S+N LI  Y   G+   A  + + M  +G   +  T   ++     +G   +G
Sbjct: 387 -PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445

Query: 204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 240
             +                Y C+++ LG++G +D A 
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.2 bits (111), Expect = 2e-07
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 222 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 263
            YN ++D   K GK++ A+ +F  M+ +    + +TYS ++  LCK
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.8 bits (107), Expect = 6e-07
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 184
           V+YNTLI+  CK G++E A  L  EM+++G E D
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 11/176 (6%)

Query: 27  DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 86
           D AL ++  ++K G  P+ V ++ L+     AG L  A  IL++    G     ++Y+++
Sbjct: 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690

Query: 87  MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 146
           M  C   + +K  LE+   +K             +I A  +  +L +A + + +M   G+
Sbjct: 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750

Query: 147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-----CDKYTHTILIDGLCK 197
             + ++Y+ L+    ++   +    LL + ++ G +     C        I GLC 
Sbjct: 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR------CITGLCL 800

Length = 1060

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 181
           V+YN+LI+ YCK GKLE A  L  EM+++G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 14/154 (9%)

Query: 44  ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 103
           ++V++NIL+ G    G+   A  +   + +SG  P+ +T+ +++  C R+     GLE  
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612

Query: 104 SAMKRK-GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 162
            +M+ K   T +   Y  V+    + G+L EA +++ +M    +  D   +  L+N  C+
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA-CR 668

Query: 163 ------EGKLEAAYLLLDEMEKQGFE---CDKYT 187
                  G+L A ++   +    G+    C+ Y 
Sbjct: 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702

Length = 857

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 78
          L TYN L+  L KAG    A  +L+E+  SG  P
Sbjct: 1  LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 11/32 (34%), Positives = 21/32 (65%)

Query: 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP 43
          T+N +++GLCK    + AL +F+ +++ G  P
Sbjct: 2  TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 37.3 bits (88), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 179 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 211
           +G + D  T+  LIDGLC+AG +  A   L+ M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 46 VTYNILIKGLCKAGRLRTARWILKELGDSG 75
          VTYN LI G CKAG+L  A  + KE+ + G
Sbjct: 1  VTYNSLISGYCKAGKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 182
           + +YN L+    K G  + A  +L+EM+  G +
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 44/226 (19%), Positives = 75/226 (33%), Gaps = 4/226 (1%)

Query: 22  KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR-WILKELGDSGHAPNA 80
                +    +   L+            +L   L K GRL  A   + K L        A
Sbjct: 36  LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA 95

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 140
                +        KY+  LE+L          D       + A  ++G  +EA +  E+
Sbjct: 96  EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155

Query: 141 MVTDGVQLD--IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
            +    +L+    +   L  L    G+ E A  LL++  K   + D      L     K 
Sbjct: 156 ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           G  + A  + E   ++    N EA   +   L + G+ + A+   E
Sbjct: 216 GKYEEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALEALE 260

Length = 291

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA 80
          VTYN LI GLCKAGR+  A  + KE+ + G  P+ 
Sbjct: 1  VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 21/87 (24%), Positives = 37/87 (42%)

Query: 6   LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 65
           L P  +T N ++  LC+      AL +   +++ G  P  +TY+IL+    +        
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774

Query: 66  WILKELGDSGHAPNAITYTTIMKCCFR 92
            +L +  + G  PN +    I   C R
Sbjct: 775 DLLSQAKEDGIKPNLVMCRCITGLCLR 801

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 10/128 (7%)

Query: 161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC--KAGNIKGARLH---LEYMNKIG 215
           C  G+LE A  LL+ M++     D+  +  L   LC  K    +G+R+    L     +G
Sbjct: 62  CSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPSLG 120

Query: 216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLL 275
               +   N ++    + G++ HA  VF  M  +D F+++ +V    KA     A  L  
Sbjct: 121 ----VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYH 176

Query: 276 SCLKSGVR 283
             L +GVR
Sbjct: 177 RMLWAGVR 184

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 35.0 bits (82), Expect = 0.002
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 12 TFNIMLNGLCKNRYTDNALRMFR 34
          T+N +++GLC+    D A+ +  
Sbjct: 9  TYNTLIDGLCRAGRVDEAVELLD 31

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 81  ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 114
           +TY T++    +  + +  LE+   MK +G   D
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGF 41
          T+N +++G CK    + AL +F+ +++ G 
Sbjct: 2  TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 9/158 (5%)

Query: 118 YCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 176
           Y       ++ GR+K+  D +E M   G + +D + +        K+  ++ A+     +
Sbjct: 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432

Query: 177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 236
                     T  +L+     + +I GA   L  + + G  ++ + Y  ++    K GK+
Sbjct: 433 RNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488

Query: 237 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSA 270
           D    VF  M       +  T+ +++    +A ++  A
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526

Length = 1060

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.95
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.89
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.84
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.83
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.82
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.81
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.81
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.8
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.8
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.8
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.8
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.8
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.77
KOG1126	638	consensus DNA-binding cell division cycle control	99.75
PRK14574	822	hmsH outer membrane protein; Provisional	99.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.74
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.74
PRK14574	822	hmsH outer membrane protein; Provisional	99.74
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.73
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.72
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.72
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.71
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.7
KOG2076	895	consensus RNA polymerase III transcription factor	99.67
PRK12370	553	invasion protein regulator; Provisional	99.64
KOG1126	638	consensus DNA-binding cell division cycle control	99.64
PRK12370	553	invasion protein regulator; Provisional	99.63
KOG2076	895	consensus RNA polymerase III transcription factor	99.63
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.62
KOG1129	478	consensus TPR repeat-containing protein [General f	99.62
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.6
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.6
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.6
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.6
KOG2003	840	consensus TPR repeat-containing protein [General f	99.59
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.59
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.58
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.58
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.57
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.55
PF13041	50	PPR_2: PPR repeat family	99.55
KOG2003	840	consensus TPR repeat-containing protein [General f	99.55
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.53
KOG1129	478	consensus TPR repeat-containing protein [General f	99.53
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.53
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.51
PF13041	50	PPR_2: PPR repeat family	99.48
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.47
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.47
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.45
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.44
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.44
PRK11189	296	lipoprotein NlpI; Provisional	99.44
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.43
PRK11189	296	lipoprotein NlpI; Provisional	99.42
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.4
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.4
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.38
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.38
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.37
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.37
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.37
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.34
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.31
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.26
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.21
PLN02789	320	farnesyltranstransferase	99.18
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.18
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.17
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.14
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.11
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.09
PF12854	34	PPR_1: PPR repeat	99.07
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.07
KOG1125	579	consensus TPR repeat-containing protein [General f	99.05
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.05
PRK04841	903	transcriptional regulator MalT; Provisional	99.04
PLN02789	320	farnesyltranstransferase	99.04
KOG1125	579	consensus TPR repeat-containing protein [General f	99.03
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.01
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.98
PF12854	34	PPR_1: PPR repeat	98.98
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.97
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.97
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.94
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.94
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.93
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.91
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.88
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.87
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.86
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.85
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.85
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.84
PRK15359	144	type III secretion system chaperone protein SscB;	98.84
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.82
PRK04841	903	transcriptional regulator MalT; Provisional	98.81
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.8
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.8
PRK15359	144	type III secretion system chaperone protein SscB;	98.8
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.78
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.78
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.78
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.77
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.76
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.75
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.74
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.73
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.71
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.68
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.65
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.64
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.64
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.63
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.59
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.59
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.58
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.56
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.54
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.53
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.53
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.52
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.51
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.5
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.5
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.42
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.4
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.39
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.37
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.37
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.37
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.36
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.35
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.33
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.33
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.25
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.24
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.23
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.22
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.21
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.21
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.21
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.2
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.19
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.18
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.18
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.17
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.14
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.14
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.13
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.13
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.12
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.11
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.11
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.07
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.07
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.07
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	98.06
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.01
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.01
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.99
PF12688	120	TPR_5: Tetratrico peptide repeat	97.94
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.92
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.92
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.91
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.89
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.88
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.87
PF12688	120	TPR_5: Tetratrico peptide repeat	97.84
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.84
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.84
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.82
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.81
KOG0553	304	consensus TPR repeat-containing protein [General f	97.81
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.76
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.72
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.71
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.71
KOG0553	304	consensus TPR repeat-containing protein [General f	97.71
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.71
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.68
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.67
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.62
PRK10803	263	tol-pal system protein YbgF; Provisional	97.61
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.6
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.58
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.55
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.55
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.55
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.55
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.47
PRK15331	165	chaperone protein SicA; Provisional	97.42
PRK10803	263	tol-pal system protein YbgF; Provisional	97.41
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.38
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.38
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.37
PF13371	73	TPR_9: Tetratricopeptide repeat	97.31
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.28
PRK15331	165	chaperone protein SicA; Provisional	97.26
PF13371	73	TPR_9: Tetratricopeptide repeat	97.25
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.23
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.22
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.21
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.21
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.17
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.15
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.15
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.11
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.09
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.05
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.05
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	97.04
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.02
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.87
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.8
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.77
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.77
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.72
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.61
KOG3941	406	consensus Intermediate in Toll signal transduction	96.59
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.56
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.55
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.52
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.37
PF13512	142	TPR_18: Tetratricopeptide repeat	96.36
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.35
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.34
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.34
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.33
KOG1585	308	consensus Protein required for fusion of vesicles	96.27
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.26
PF13428	44	TPR_14: Tetratricopeptide repeat	96.25
PRK11906	458	transcriptional regulator; Provisional	96.24
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.24
KOG4555	175	consensus TPR repeat-containing protein [Function	96.22
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.14
KOG4555	175	consensus TPR repeat-containing protein [Function	96.09
PF13428	44	TPR_14: Tetratricopeptide repeat	96.06
PF13512	142	TPR_18: Tetratricopeptide repeat	96.02
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.01
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.95
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.94
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	95.92
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.91
KOG3941	406	consensus Intermediate in Toll signal transduction	95.85
KOG1258	577	consensus mRNA processing protein [RNA processing	95.82
KOG1585	308	consensus Protein required for fusion of vesicles	95.76
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.76
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.6
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.47
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.44
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.43
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.41
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.32
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.29
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	95.27
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.19
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.1
KOG4570	418	consensus Uncharacterized conserved protein [Funct	95.1
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.09
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.01
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	94.73
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.68
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.63
PRK11906	458	transcriptional regulator; Provisional	94.6
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.52
KOG4570	418	consensus Uncharacterized conserved protein [Funct	94.52
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.49
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.31
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	94.22
PF13431	34	TPR_17: Tetratricopeptide repeat	94.09
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.06
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.92
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.9
PF13431	34	TPR_17: Tetratricopeptide repeat	93.79
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.74
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	93.72
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.71
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	93.69
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	93.58
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	93.43
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.41
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.27
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.17
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.8
PF13929	292	mRNA_stabil: mRNA stabilisation	92.7
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.67
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.64
PF13762	145	MNE1: Mitochondrial splicing apparatus component	92.57
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.43
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.32
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	92.06
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.02
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.02
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.01
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.0
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.73
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.54
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.53
COG1747	711	Uncharacterized N-terminal domain of the transcrip	91.5
KOG4234	271	consensus TPR repeat-containing protein [General f	91.38
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.24
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.21
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.19
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	91.01
COG4455	273	ImpE Protein of avirulence locus involved in tempe	90.81
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	90.77
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.74
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.45
KOG4234	271	consensus TPR repeat-containing protein [General f	90.33
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.27
PF13929	292	mRNA_stabil: mRNA stabilisation	90.1
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.9
PRK09687	280	putative lyase; Provisional	89.1
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.04
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	89.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	88.5
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.36
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.21
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	88.04
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	87.92
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	87.64
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	87.43
KOG4648	536	consensus Uncharacterized conserved protein, conta	87.39
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	87.24
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	87.01
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	86.61
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	86.53
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	86.28
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	85.8
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	85.76
KOG4648	536	consensus Uncharacterized conserved protein, conta	85.65
cd08819	88	CARD_MDA5_2 Caspase activation and recruitment dom	85.52
COG1747	711	Uncharacterized N-terminal domain of the transcrip	85.03
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	85.0
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	84.85
PRK09687	280	putative lyase; Provisional	84.47
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	83.99
COG3947	361	Response regulator containing CheY-like receiver a	83.69
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	83.6
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	83.52
KOG4507	886	consensus Uncharacterized conserved protein, conta	82.94
PF09477	116	Type_III_YscG: Bacterial type II secretion system	82.43
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	81.65
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	81.03
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	80.76
COG0735	145	Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani	80.64

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.7e-58  Score=405.01  Aligned_cols=318  Identities=16%  Similarity=0.265  Sum_probs=306.8

Q ss_pred             CCCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh
Q 020976            1 MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA   80 (319)
Q Consensus         1 M~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   80 (319)
                      |++.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||.
T Consensus       463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~  542 (1060)
T PLN03218        463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR  542 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHH
Q 020976           81 ITYTTIMKCCFRNRKYKLGLEILSAMKR--KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN  158 (319)
Q Consensus        81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  158 (319)
                      .+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|++++.+|++.|++++|.++|++|.+.|++|+..+|+.++.
T Consensus       543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~  622 (1060)
T PLN03218        543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN  622 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence            9999999999999999999999999986  67899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 020976          159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH  238 (319)
Q Consensus       159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  238 (319)
                      +|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++
T Consensus       623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee  702 (1060)
T PLN03218        623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK  702 (1060)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc----cCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          239 AINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       239 a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      |.++|++|.    .++..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+++++|.+
T Consensus       703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k  782 (1060)
T PLN03218        703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE  782 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999995    4589999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcc
Q 020976          315 AKIS  318 (319)
Q Consensus       315 ~~i~  318 (319)
                      .|+.
T Consensus       783 ~Gi~  786 (1060)
T PLN03218        783 DGIK  786 (1060)
T ss_pred             cCCC
Confidence            8864

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.9e-56  Score=392.21  Aligned_cols=311  Identities=20%  Similarity=0.300  Sum_probs=304.2

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      ||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI  514 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI  514 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh--CCCccChhhHHHHHHHHHhcCC
Q 020976           88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT--DGVQLDIVSYNTLINLYCKEGK  165 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~  165 (319)
                      .+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|+
T Consensus       515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~  594 (1060)
T PLN03218        515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ  594 (1060)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999986  5789999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976          166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES  245 (319)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  245 (319)
                      +++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+++++
T Consensus       595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e  674 (1060)
T PLN03218        595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD  674 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccC----CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 020976          246 MEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS  318 (319)
Q Consensus       246 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i~  318 (319)
                      |.+.    +..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus       675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~  751 (1060)
T PLN03218        675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC  751 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            9854    889999999999999999999999999999999999999999999999999999999999999988763

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.9e-53  Score=372.09  Aligned_cols=307  Identities=21%  Similarity=0.324  Sum_probs=267.7

Q ss_pred             CCCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh
Q 020976            1 MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA   80 (319)
Q Consensus         1 M~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   80 (319)
                      |++.|+.||..+||.++..|++.|++++|.++|++|.+    ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+.
T Consensus       149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~  224 (697)
T PLN03081        149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP  224 (697)
T ss_pred             HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh
Confidence            34556666666666666666666666666666666643    56666777777777777777777777777666666777


Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 020976           81 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY  160 (319)
Q Consensus        81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (319)
                      .+|+.++.+|.+.|..+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|..    +|..+|+.++.+|
T Consensus       225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y  300 (697)
T PLN03081        225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGY  300 (697)
T ss_pred             hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHH
Confidence            777777777777777777777766677777778888899999999999999999999999964    5899999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 020976          161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI  240 (319)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  240 (319)
                      ++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++|+..+++.++.+|++.|++++|.
T Consensus       301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~  380 (697)
T PLN03081        301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR  380 (697)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          241 NVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      ++|++|..+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.
T Consensus       381 ~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~  455 (697)
T PLN03081        381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN  455 (697)
T ss_pred             HHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999763

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=9e-51  Score=355.31  Aligned_cols=307  Identities=17%  Similarity=0.250  Sum_probs=291.8

Q ss_pred             CCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976            2 ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI   81 (319)
Q Consensus         2 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   81 (319)
                      .+.|+.||..+||.|+.+|++.|++++|.++|+.|..    +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus       251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~  326 (697)
T PLN03081        251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF  326 (697)
T ss_pred             HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence            4568889999999999999999999999999999964    589999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976           82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC  161 (319)
Q Consensus        82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (319)
                      ||+.++.+|++.|++++|.+++..|.+.|++||..+++.|+.+|++.|++++|.++|++|.+    ||..+|+.+|.+|+
T Consensus       327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~  402 (697)
T PLN03081        327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYG  402 (697)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999964    68999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCCHHHHH
Q 020976          162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK-IGFDSNLEAYNCIVDRLGKDGKIDHAI  240 (319)
Q Consensus       162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~  240 (319)
                      +.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.++++.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999986 599999999999999999999999999


Q ss_pred             HHHHhhc-cCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 020976          241 NVFESME-VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS  318 (319)
Q Consensus       241 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i~  318 (319)
                      ++++++. .++..+|++++.+|...|+++.|..+++++.+.  .| +..+|..++..|++.|++++|.+++++|++.|+.
T Consensus       483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~  560 (697)
T PLN03081        483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS  560 (697)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence            9999986 458899999999999999999999999998754  44 5679999999999999999999999999999874

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.2e-50  Score=360.58  Aligned_cols=310  Identities=17%  Similarity=0.172  Sum_probs=210.0

Q ss_pred             CCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976            2 ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI   81 (319)
Q Consensus         2 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   81 (319)
                      ++.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.    .||..
T Consensus       280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~  355 (857)
T PLN03077        280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV  355 (857)
T ss_pred             HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence            34455555555555555555555555555555555555555555555555555555555555555555553    24555


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976           82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC  161 (319)
Q Consensus        82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (319)
                      +|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|+
T Consensus       356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~  435 (857)
T PLN03077        356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS  435 (857)
T ss_pred             eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555444444444444


Q ss_pred             hcCCHHHHHHHHH-------------------------------HHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHH
Q 020976          162 KEGKLEAAYLLLD-------------------------------EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY  210 (319)
Q Consensus       162 ~~~~~~~a~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  210 (319)
                      +.|++++|.++|+                               +|.. ++.||..||+.++.+|++.|+.+.+.+++..
T Consensus       436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~  514 (857)
T PLN03077        436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH  514 (857)
T ss_pred             HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence            4444444444444                               4432 3566666666666666666666666666666


Q ss_pred             HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHH
Q 020976          211 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK  290 (319)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  290 (319)
                      +.+.|+.++..++++++++|++.|++++|.++|+.+ .+|..+|++++.+|++.|+.++|.++|++|.+.|+.||..||+
T Consensus       515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~  593 (857)
T PLN03077        515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI  593 (857)
T ss_pred             HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence            666777777777788889999999999999999999 7899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH-hhhc
Q 020976          291 AVVDGLRHSGCRREAKKIQSKIR-MAKI  317 (319)
Q Consensus       291 ~l~~~~~~~g~~~~a~~~~~~~~-~~~i  317 (319)
                      .++.+|.+.|.+++|.++|++|+ +.|+
T Consensus       594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi  621 (857)
T PLN03077        594 SLLCACSRSGMVTQGLEYFHSMEEKYSI  621 (857)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999998 4554

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=7.3e-50  Score=357.26  Aligned_cols=308  Identities=19%  Similarity=0.240  Sum_probs=289.9

Q ss_pred             CCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976            2 ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI   81 (319)
Q Consensus         2 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   81 (319)
                      .+.|+.||+.+||.++.+|++.|++++|.++|++|.+    ||..+||.++.+|++.|++++|.++|++|...|+.||..
T Consensus       214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~  289 (857)
T PLN03077        214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM  289 (857)
T ss_pred             HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence            4567788888889999999999999999999999864    688999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976           82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC  161 (319)
Q Consensus        82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (319)
                      ||+.++.+|.+.|+++.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.    .||..+|+.++.+|+
T Consensus       290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~  365 (857)
T PLN03077        290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYE  365 (857)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999986    368899999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 020976          162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN  241 (319)
Q Consensus       162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  241 (319)
                      +.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.++.+|++.|++++|.+
T Consensus       366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~  445 (857)
T PLN03077        366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE  445 (857)
T ss_pred             hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 020976          242 VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS  318 (319)
Q Consensus       242 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i~  318 (319)
                      +|++|..+|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||..++.+|++.|..+.+.+++..+.+.|+.
T Consensus       446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~  521 (857)
T PLN03077        446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG  521 (857)
T ss_pred             HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999986 59999999999999888888888888888888777653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=2.5e-24  Score=177.78  Aligned_cols=298  Identities=14%  Similarity=0.069  Sum_probs=247.7

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHh
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN---AITYTTIMKCCFR   92 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~   92 (319)
                      ....+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++   ...+..+...+.+
T Consensus        41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~  119 (389)
T PRK11788         41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK  119 (389)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            34456778999999999999998743 3677899999999999999999999999987532222   2567888999999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC----hhhHHHHHHHHHhcCCHHH
Q 020976           93 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD----IVSYNTLINLYCKEGKLEA  168 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~  168 (319)
                      .|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+...+..+.    ...+..+...+.+.|++++
T Consensus       120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  198 (389)
T PRK11788        120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA  198 (389)
T ss_pred             CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence            999999999999998764 55678899999999999999999999999988643322    1245667788889999999


Q ss_pred             HHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 020976          169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV  248 (319)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  248 (319)
                      |...++++.+.... +...+..+...+...|++++|..+++++.+.+......++..++.+|...|++++|...++++..
T Consensus       199 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        199 ARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999876433 45677888899999999999999999999764222346678899999999999999999998764


Q ss_pred             C--CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhhcc
Q 020976          249 K--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH---SGCRREAKKIQSKIRMAKIS  318 (319)
Q Consensus       249 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~i~  318 (319)
                      .  +...+..++..+.+.|++++|..+++++.+.  .|+...+..++..+..   .|+.+++..+++++.+.+++
T Consensus       278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~  350 (389)
T PRK11788        278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK  350 (389)
T ss_pred             hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence            3  5556788899999999999999999998875  6888888888887764   56899999999999988765

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.95  E-value=1.7e-23  Score=190.80  Aligned_cols=297  Identities=12%  Similarity=0.036  Sum_probs=201.5

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      .+..+|..+...+...|++++|+..|+.+.+... .+...+..+...+...|++++|...|+++.... +.+..++..+.
T Consensus       599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  676 (899)
T TIGR02917       599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA  676 (899)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            3445555666666666666666666666555422 244555555666666666666666666655532 22455566666


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976           88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE  167 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  167 (319)
                      ..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...|+.+...+  |+..++..+..++.+.|+++
T Consensus       677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~  753 (899)
T TIGR02917       677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA  753 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence            66666666666666666665554 4455556666666667777777777777766642  34455666677777777777


Q ss_pred             HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      +|.+.+..+.+..+. +...+..+...|...|++++|...|+++.+.. +.+..++..+...+...|+ ++|...++++.
T Consensus       754 ~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~  830 (899)
T TIGR02917       754 EAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKAL  830 (899)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence            777777777665432 56667777777777778888888877777664 4566777777777777777 66777777665


Q ss_pred             cC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          248 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       248 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      ..   ++..+..+...+...|++++|.+.++++++.+.. ++.++..+..++.+.|++++|.+++++|.
T Consensus       831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            33   5667777888888889999999999999887654 78888888999999999999999998875

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=2.1e-22  Score=183.57  Aligned_cols=304  Identities=12%  Similarity=-0.006  Sum_probs=157.5

Q ss_pred             CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976            7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI   86 (319)
Q Consensus         7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   86 (319)
                      +++..+|..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++...++ .+..++..+
T Consensus       462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l  539 (899)
T TIGR02917       462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILAL  539 (899)
T ss_pred             CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence            34555666666666667777777776666655422 2444555556666666666666666666655432 244555555


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCH
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL  166 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  166 (319)
                      ...+.+.|++++|...++++.+.+ +.+...+..+...+.+.|++++|..+++.+... .+.+...|..+..++...|++
T Consensus       540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~  617 (899)
T TIGR02917       540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDL  617 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCH
Confidence            555555555555555555554443 333344444445555555555555555554443 223344455555555555555


Q ss_pred             HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC-------------------------------
Q 020976          167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG-------------------------------  215 (319)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------------------  215 (319)
                      ++|...++.+.+.... +...+..+...+...|++++|...++++.+..                               
T Consensus       618 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  696 (899)
T TIGR02917       618 NKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ  696 (899)
T ss_pred             HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555555554443211 33344444444444444444444444444332                               


Q ss_pred             --CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHH
Q 020976          216 --FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA  291 (319)
Q Consensus       216 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  291 (319)
                        .+.+...+..+...+...|++++|.+.|+.+...  +..++..++..+...|++++|.+.++++.+.. +.+...+..
T Consensus       697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~  775 (899)
T TIGR02917       697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTA  775 (899)
T ss_pred             hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence              1233344444444555555555555555544322  23344445555555555555555555555542 234555566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          292 VVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       292 l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      +...|...|++++|.++|+++.+.+
T Consensus       776 la~~~~~~g~~~~A~~~~~~~~~~~  800 (899)
T TIGR02917       776 LAELYLAQKDYDKAIKHYRTVVKKA  800 (899)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHhC
Confidence            6666666666666666666665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=4.8e-23  Score=170.14  Aligned_cols=276  Identities=14%  Similarity=0.117  Sum_probs=228.8

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT   84 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (319)
                      .+..++..+...+...|++++|..+++.+...+..++   ...+..+...|.+.|++++|..+|+++.+.. +++..++.
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~  145 (389)
T PRK11788         67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ  145 (389)
T ss_pred             ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH
Confidence            3566899999999999999999999999987532222   3567889999999999999999999998753 34678899


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCC----cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 020976           85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFD----GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY  160 (319)
Q Consensus        85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (319)
                      .++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  224 (389)
T PRK11788        146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA  224 (389)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence            999999999999999999999987652221    1234567777889999999999999998763 34566788889999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 020976          161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI  240 (319)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  240 (319)
                      .+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+.  .|+...+..++..+.+.|++++|.
T Consensus       225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~  302 (389)
T PRK11788        225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQ  302 (389)
T ss_pred             HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHH
Confidence            999999999999999997644433567888999999999999999999999886  466677788999999999999999


Q ss_pred             HHHHhhccC--CchhHHHHHHHHHc---cCChhHHHHHHHHHHHcCCccCHH
Q 020976          241 NVFESMEVK--DSFTYSSMVHNLCK---AKRLPSASKLLLSCLKSGVRILKS  287 (319)
Q Consensus       241 ~~~~~~~~~--~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~  287 (319)
                      .+++++...  +...++.++..+..   .|+.+++..+++++.+.++.|++.
T Consensus       303 ~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        303 ALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            999987654  55677777777664   558999999999999988888776

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.92  E-value=1.9e-20  Score=162.35  Aligned_cols=301  Identities=13%  Similarity=0.092  Sum_probs=240.2

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +...+..++.+....|++++|++.|+++.+..+. +...+..+...+...|++++|...++++.... +.+...+..+..
T Consensus        75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~  152 (656)
T PRK15174         75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLR  152 (656)
T ss_pred             chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            4455666777778899999999999999886433 67788888899999999999999999998753 235778888899


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA  168 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  168 (319)
                      .+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+......++...+..+..++...|++++
T Consensus       153 ~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e  230 (656)
T PRK15174        153 TLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE  230 (656)
T ss_pred             HHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence            9999999999999999887663 3333344333 3478889999999999998776433444555566778889999999


Q ss_pred             HHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH----HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 020976          169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG----ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE  244 (319)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  244 (319)
                      |...+++..+.... +...+..+...+...|++++    |...++...+.. +.+...+..+...+...|++++|...++
T Consensus       231 A~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~  308 (656)
T PRK15174        231 AIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ  308 (656)
T ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999987543 56777888999999999885    799999988864 4566788899999999999999999999


Q ss_pred             hhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976          245 SMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK-SAQKAVVDGLRHSGCRREAKKIQSKIRMAKI  317 (319)
Q Consensus       245 ~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i  317 (319)
                      +....   ++..+..+...+...|++++|...++++...  .|+. ..+..+..++...|+.++|...|++..+...
T Consensus       309 ~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        309 QSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence            87754   5567788889999999999999999999876  3443 3344456788999999999999998876644

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.90  E-value=9.9e-20  Score=157.92  Aligned_cols=297  Identities=10%  Similarity=-0.004  Sum_probs=245.0

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR   92 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (319)
                      ...++..+.+.|++++|..+++........ +...+..++.+....|+++.|...++++....+. +...+..+...+..
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~  122 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK  122 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence            345667788899999999999999887544 4566667777888899999999999999986433 67788889999999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 020976           93 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL  172 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  172 (319)
                      .|++++|...+++..+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...
T Consensus       123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~  199 (656)
T PRK15174        123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDL  199 (656)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHH
Confidence            999999999999999874 55677888899999999999999999998876532 233334333 347889999999999


Q ss_pred             HHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHhhcc
Q 020976          173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH----AINVFESMEV  248 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~  248 (319)
                      ++.+.+....++...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++    |...|++...
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~  278 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ  278 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            9998876544455555666778889999999999999999875 5567788889999999999986    7899988765


Q ss_pred             C---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          249 K---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       249 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      .   +...+..+...+...|++++|...+++.+.... .+...+..+..++.+.|++++|...++++.+.+
T Consensus       279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~  348 (656)
T PRK15174        279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK  348 (656)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4   566888999999999999999999999998643 256778888899999999999999999887654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.89  E-value=1.7e-18  Score=150.49  Aligned_cols=304  Identities=14%  Similarity=0.006  Sum_probs=205.4

Q ss_pred             CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH---------------
Q 020976            6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE---------------   70 (319)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------------   70 (319)
                      +.|+...|..+..+|.+.|++++|++.++...+.+.. +...|..+..+|...|++++|...|..               
T Consensus       156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~  234 (615)
T TIGR00990       156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA  234 (615)
T ss_pred             cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            4567777778888888888888888888887775332 556677777777777777766543322               


Q ss_pred             --------------------------------------------------------------------------------
Q 020976           71 --------------------------------------------------------------------------------   70 (319)
Q Consensus        71 --------------------------------------------------------------------------------   70 (319)
                                                                                                      
T Consensus       235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~  314 (615)
T TIGR00990       235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA  314 (615)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence                                                                                            


Q ss_pred             -----HhhCC-CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976           71 -----LGDSG-HAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus        71 -----~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  143 (319)
                           ....+ ..| ....+..+..++...|++++|+..+++..+.. +.....|..+...+...|++++|...|++...
T Consensus       315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  393 (615)
T TIGR00990       315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALK  393 (615)
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                 22111 011 12334445555556677777777777776653 33345666677777777788888888777766


Q ss_pred             CCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhH
Q 020976          144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY  223 (319)
Q Consensus       144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  223 (319)
                      .. +.+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...++...+.. +.+...+
T Consensus       394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~  470 (615)
T TIGR00990       394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVY  470 (615)
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHH
Confidence            52 335667777777788888888888888887765433 45566677777778888888888888877653 4456777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhccCCc---hh-------HHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHH
Q 020976          224 NCIVDRLGKDGKIDHAINVFESMEVKDS---FT-------YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV  293 (319)
Q Consensus       224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  293 (319)
                      ..+..++...|++++|.+.|++....++   ..       ++.....+...|++++|..++++.+.... .+...+..+.
T Consensus       471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la  549 (615)
T TIGR00990       471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMA  549 (615)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence            7888888888888888888887654321   11       11122233346888888888888776532 2445678888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhh
Q 020976          294 DGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       294 ~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      ..+...|++++|.+.|++..+.
T Consensus       550 ~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       550 QLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHccCHHHHHHHHHHHHHH
Confidence            8999999999999998886543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=5.7e-18  Score=147.27  Aligned_cols=298  Identities=12%  Similarity=-0.035  Sum_probs=236.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF   91 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (319)
                      .+......+.+.|++++|+..|++..+.  .|+...|..+..+|.+.|++++|++.++...+... .+...|..+..++.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            3556777889999999999999998874  57888999999999999999999999999998643 25778899999999


Q ss_pred             hcCChhHHHHHHHHHHhCC-----------------------------CCCCcccHHHHHH-------------------
Q 020976           92 RNRKYKLGLEILSAMKRKG-----------------------------YTFDGFGYCTVIA-------------------  123 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~ll~-------------------  123 (319)
                      ..|++++|+..+..+...+                             .+++...+..+..                   
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            9999999987654432211                             0111111111100                   


Q ss_pred             -----------HH------HHcCchHHHHHHHHHHHhCC--CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 020976          124 -----------AF------VKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD  184 (319)
Q Consensus       124 -----------~~------~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  184 (319)
                                 ..      ...+++++|.+.|+.....+  .+.....+..+...+...|++++|...+++..+..+. .
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~  364 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V  364 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c
Confidence                       00      11257889999999988764  2234567888888999999999999999999876432 4


Q ss_pred             HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHH
Q 020976          185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL  261 (319)
Q Consensus       185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~  261 (319)
                      ...|..+...+...|++++|...++...+.+ +.+..++..+...+...|++++|...|++....   +...+..+...+
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            5678888888999999999999999998874 456788999999999999999999999988755   556777888899


Q ss_pred             HccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      ...|++++|+..+++.++.. +.++..+..+..++...|++++|.+.|++..+.
T Consensus       444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            99999999999999998753 336788999999999999999999999986654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.84  E-value=8.3e-17  Score=148.84  Aligned_cols=301  Identities=11%  Similarity=0.033  Sum_probs=139.6

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC-CHHHH------------HHHHHHHHhcCChhHHHHHHHHHhhCC
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP-ELVTY------------NILIKGLCKAGRLRTARWILKELGDSG   75 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~   75 (319)
                      +...+..+...+.+.|++++|+..|++..+..... ....+            ......+.+.|++++|...|+++....
T Consensus       302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~  381 (1157)
T PRK11447        302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD  381 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            44555556666666666666666666655532211 11111            111234445566666666666665542


Q ss_pred             CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH----------------------------------
Q 020976           76 HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV----------------------------------  121 (319)
Q Consensus        76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------------------------------  121 (319)
                      . .+...+..+..++...|++++|++.|+++.+.. +.+...+..+                                  
T Consensus       382 P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l  459 (1157)
T PRK11447        382 N-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL  459 (1157)
T ss_pred             C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            2 234455555666666666666666666665442 2122222211                                  


Q ss_pred             --------HHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 020976          122 --------IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID  193 (319)
Q Consensus       122 --------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  193 (319)
                              ...+...|++++|+..|++..+.. +.+...+..+...|.+.|++++|...++++.+..+. +...+..+..
T Consensus       460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al  537 (1157)
T PRK11447        460 QNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGL  537 (1157)
T ss_pred             hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence                    122334455566666666555542 223444555556666666666666666665543221 1111111111


Q ss_pred             HHhccCChhHHHHHHHHHHhc---------------------------------------CCCCChhhHHHHHHHHHhcC
Q 020976          194 GLCKAGNIKGARLHLEYMNKI---------------------------------------GFDSNLEAYNCIVDRLGKDG  234 (319)
Q Consensus       194 ~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~~~  234 (319)
                      .+...++.++|...++.+...                                       ..+.+...+..+...+.+.|
T Consensus       538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g  617 (1157)
T PRK11447        538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRG  617 (1157)
T ss_pred             HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence            122222222222222211000                                       01222233344444455555


Q ss_pred             CHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976          235 KIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK  311 (319)
Q Consensus       235 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  311 (319)
                      ++++|++.|+++...   ++..+..++..|...|++++|.+.++...... +.+...+..+..++...|++++|.+++++
T Consensus       618 ~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~  696 (1157)
T PRK11447        618 DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNR  696 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            555555555554432   34455555555555555555555555544331 11333444445555555555555555555


Q ss_pred             HHh
Q 020976          312 IRM  314 (319)
Q Consensus       312 ~~~  314 (319)
                      +..
T Consensus       697 al~  699 (1157)
T PRK11447        697 LIP  699 (1157)
T ss_pred             Hhh
Confidence            443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.83  E-value=1.4e-16  Score=147.43  Aligned_cols=286  Identities=11%  Similarity=0.006  Sum_probs=191.7

Q ss_pred             HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH--------------
Q 020976           18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY--------------   83 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------   83 (319)
                      ..+.+.|++++|++.|+++.+... .+...+..+...+...|++++|.+.|+++.+.... +...+              
T Consensus       359 ~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~  436 (1157)
T PRK11447        359 DAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEK  436 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHH
Confidence            344555555556655555555422 23444555555555555555555555555543211 11111              


Q ss_pred             ----------------------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHH
Q 020976           84 ----------------------------TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT  135 (319)
Q Consensus        84 ----------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  135 (319)
                                                  ..+...+...|++++|++.+++..+.. +-++..+..+...|.+.|++++|.
T Consensus       437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~  515 (1157)
T PRK11447        437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD  515 (1157)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence                                        122333445677777777777777664 335556666777777777777777


Q ss_pred             HHHHHHHhCCCccChhhHHHH--------------------------------------------HHHHHhcCCHHHHHH
Q 020976          136 DYMEQMVTDGVQLDIVSYNTL--------------------------------------------INLYCKEGKLEAAYL  171 (319)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~l--------------------------------------------~~~~~~~~~~~~a~~  171 (319)
                      ..++++.... +.+...+..+                                            ...+...|+.++|..
T Consensus       516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~  594 (1157)
T PRK11447        516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA  594 (1157)
T ss_pred             HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence            7777776542 1222222222                                            333444555555555


Q ss_pred             HHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--
Q 020976          172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--  249 (319)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--  249 (319)
                      +++.     .+.+...+..+...+.+.|++++|...|+.+.+.. +.+...+..++..+...|++++|.+.++.+...  
T Consensus       595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p  668 (1157)
T PRK11447        595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN  668 (1157)
T ss_pred             HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence            5541     23355567788889999999999999999999874 556788999999999999999999999987754  


Q ss_pred             -CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCc--c---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR--I---LKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       250 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                       ++..+..+..++...|++++|.+++++++.....  |   +...+..+...+...|++++|...|++..
T Consensus       669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al  738 (1157)
T PRK11447        669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM  738 (1157)
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             5566777888899999999999999999875322  2   22456667888999999999999998874

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=1.5e-17  Score=134.73  Aligned_cols=299  Identities=13%  Similarity=0.065  Sum_probs=205.3

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh------
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT------   82 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------   82 (319)
                      -.++|..+...+-..|++++|+.+++.+.+...+ ....|..+..++...|+.+.|.+.|.+..+.  .|+...      
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg  191 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG  191 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence            4678999999999999999999999999986433 6788999999999999999998888887764  343322      


Q ss_pred             -----------------------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976           83 -----------------------------YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE  133 (319)
Q Consensus        83 -----------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  133 (319)
                                                   |..|.-.+-.+|+...|++.|++..+.+ +.-...|..|...|...+.++.
T Consensus       192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~  270 (966)
T KOG4626|consen  192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDR  270 (966)
T ss_pred             HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchH
Confidence                                         2222223333444444555554444432 2223445555555555555666


Q ss_pred             HHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976          134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK  213 (319)
Q Consensus       134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  213 (319)
                      |...+.+..... +-....+..+...|...|+.+.|+..|++..+..+. -+..|+.+..++-..|++.+|...+.....
T Consensus       271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~  348 (966)
T KOG4626|consen  271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALR  348 (966)
T ss_pred             HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence            665555555431 223445555566666677777777777777665322 245778888888888888888888887776


Q ss_pred             cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC---chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccC-HHHH
Q 020976          214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL-KSAQ  289 (319)
Q Consensus       214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~  289 (319)
                      .. +......+.|...|...|.+++|..+|.....-.   ...++.|...|-++|++++|+..+++.++  +.|+ ...|
T Consensus       349 l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~  425 (966)
T KOG4626|consen  349 LC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADAL  425 (966)
T ss_pred             hC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHH
Confidence            53 3344677778888888888888888887766543   34677788888888888888888888776  4665 3678


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          290 KAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       290 ~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      +.+...|...|+++.|.+.+.+....+
T Consensus       426 ~NmGnt~ke~g~v~~A~q~y~rAI~~n  452 (966)
T KOG4626|consen  426 SNMGNTYKEMGDVSAAIQCYTRAIQIN  452 (966)
T ss_pred             HhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence            888888888888888888887765544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.82  E-value=8.4e-16  Score=136.35  Aligned_cols=301  Identities=11%  Similarity=-0.022  Sum_probs=169.6

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +...+..+...+...|++++|.++|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+.. +..+..
T Consensus        48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~  124 (765)
T PRK10049         48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAY  124 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHH
Confidence            34457777777777788888888887776652 2345666677777777788888888777777652 22445 667777


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHH-------------------------------
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY-------------------------------  137 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-------------------------------  137 (319)
                      ++...|+.++|+..++++.+.. +.+...+..+...+...+..+.|+..                               
T Consensus       125 ~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~  203 (765)
T PRK10049        125 VYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR  203 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence            7777777777777777777653 33444444444444444444433322                               


Q ss_pred             ---------------HHHHHhC-CCccChh-hHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHHhHHHHHHHH
Q 020976          138 ---------------MEQMVTD-GVQLDIV-SYN----TLINLYCKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILIDGL  195 (319)
Q Consensus       138 ---------------~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~  195 (319)
                                     ++.+... ...|+.. .+.    ..+.++...|++++|...|+.+.+.+.. |+. ....+..++
T Consensus       204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y  282 (765)
T PRK10049        204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY  282 (765)
T ss_pred             ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence                           2232221 0011110 110    0122344556677777777776665422 222 122245566


Q ss_pred             hccCChhHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc------------------hhH
Q 020976          196 CKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS------------------FTY  254 (319)
Q Consensus       196 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~~~  254 (319)
                      ...|++++|...++.+.+.....   .......+..++...|++++|.++++.+...++                  ..+
T Consensus       283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~  362 (765)
T PRK10049        283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ  362 (765)
T ss_pred             HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence            66777777777777665432100   123344455556666777777766666554321                  123


Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      ..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.+++....
T Consensus       363 ~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l  422 (765)
T PRK10049        363 SLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL  422 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            344555666666666666666665542 224556666666666666666666666665543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.81  E-value=5.6e-19  Score=138.77  Aligned_cols=257  Identities=17%  Similarity=0.139  Sum_probs=89.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc
Q 020976           50 ILIKGLCKAGRLRTARWILKELGDSG-HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI  128 (319)
Q Consensus        50 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  128 (319)
                      .+...+.+.|++++|.+++++..... .+.+...|..+...+...++++.|.+.++++...+ +-++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence            44666667777777777775544332 22344455555556666677777777777777664 3355556666655 566


Q ss_pred             CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHHHhccCChhHHHHH
Q 020976          129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNIKGARLH  207 (319)
Q Consensus       129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~  207 (319)
                      +++++|.++++...+.  .++...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|...
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7777777777665543  2455556666777777777777777777766432 234556666777777777777777777


Q ss_pred             HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc---cCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc
Q 020976          208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI  284 (319)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  284 (319)
                      +++..+.. |.+......++..+...|+.+++.+++....   ..++..+..+..++...|+.++|+.++++..+.. +.
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~  246 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD  246 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence            77777753 3346666777777777777777666665543   2366777777777777788888888888777652 23


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976          285 LKSAQKAVVDGLRHSGCRREAKKIQSKI  312 (319)
Q Consensus       285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (319)
                      |+.....+.+++...|+.++|.++.+++
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             -HHHHHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            6777777777888888888887776654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=3.4e-17  Score=132.72  Aligned_cols=300  Identities=14%  Similarity=0.050  Sum_probs=242.2

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCC--------------------------------CCC-HHHHHHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--------------------------------VPE-LVTYNILIKGL   55 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~~-~~~~~~l~~~~   55 (319)
                      .++.|..+..++...|+.+.|.+.|.+..+.++                                .|. ...|..|...+
T Consensus       149 fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f  228 (966)
T KOG4626|consen  149 FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVF  228 (966)
T ss_pred             hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHH
Confidence            455666777777777777777777766655321                                111 12345566666


Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHH
Q 020976           56 CKAGRLRTARWILKELGDSGHAPN-AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA  134 (319)
Q Consensus        56 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  134 (319)
                      -.+|+...|++.|++....  .|+ ...|..|...|...+.+++|...|.+..... +.....+..+...|...|+++-|
T Consensus       229 ~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlA  305 (966)
T KOG4626|consen  229 NAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLA  305 (966)
T ss_pred             hhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHH
Confidence            6778888888888888764  444 6789999999999999999999999988764 55677788888889999999999


Q ss_pred             HHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976          135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI  214 (319)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  214 (319)
                      +..+++..+.. +--...|+.+..++-..|++.+|.+.|.+....... .....+.+...+...|.++.|..+|....+.
T Consensus       306 I~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v  383 (966)
T KOG4626|consen  306 IDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV  383 (966)
T ss_pred             HHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence            99999999862 223678999999999999999999999999986443 4567889999999999999999999998875


Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC---chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccC-HHHHH
Q 020976          215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL-KSAQK  290 (319)
Q Consensus       215 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~  290 (319)
                      . +--....+.|...|-++|++++|...+++...-+   ...|+.+...|-..|+.+.|+..+.+.+..  .|. ...++
T Consensus       384 ~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhs  460 (966)
T KOG4626|consen  384 F-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHS  460 (966)
T ss_pred             C-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHh
Confidence            3 3335778999999999999999999999887653   357888999999999999999999998864  554 46788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          291 AVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       291 ~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      .+...|...|+..+|+.-+++..+.+
T Consensus       461 NLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  461 NLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             hHHHHhhccCCcHHHHHHHHHHHccC
Confidence            99999999999999999998876543

>TIGR00540 hemY_coli hemY protein

Probab=99.80  E-value=7.9e-16  Score=127.04  Aligned_cols=287  Identities=11%  Similarity=0.027  Sum_probs=212.7

Q ss_pred             hhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 020976           21 CKNRYTDNALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG   99 (319)
Q Consensus        21 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   99 (319)
                      ...|+++.|.+.+....+..  |+ ...+-....+....|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            34799999999998887753  44 3344455677888999999999999987753222223344457788899999999


Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHH-HHHHHH---HhcCCHHHHHHHHHH
Q 020976          100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN-TLINLY---CKEGKLEAAYLLLDE  175 (319)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~  175 (319)
                      ...++.+.+.. |-++.....+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++   ...+..++..+.+..
T Consensus       173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999886 667778889999999999999999999999988654 333232 111222   333333444445555


Q ss_pred             HHHcCCC---CcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976          176 MEKQGFE---CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA---YNCIVDRLGKDGKIDHAINVFESMEVK  249 (319)
Q Consensus       176 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~  249 (319)
                      +.+..+.   .+...+..+...+...|+.++|..++++..+..  |+...   ...........++.+.+.+.++...+.
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            5554321   377888889999999999999999999999864  33331   111112223457888888888776544


Q ss_pred             ---Cc--hhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          250 ---DS--FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       250 ---~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                         ++  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               66  67778999999999999999999964444457898889999999999999999999998753

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.80  E-value=6.7e-19  Score=138.35  Aligned_cols=265  Identities=15%  Similarity=0.154  Sum_probs=113.2

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI   86 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   86 (319)
                      |+...+ .+...+.+.|++++|+++++...... .+.|...|..+.......++++.|.+.++++...+.. ++..+..+
T Consensus         7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l   84 (280)
T PF13429_consen    7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERL   84 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            443444 56888899999999999997654443 2335566666777778899999999999999987544 67778888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHHHhcCC
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGK  165 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~  165 (319)
                      +.. ...+++++|.+++....+.  .+++..+...+..+.+.++++++..+++.+... ..+.+...|..+...+.+.|+
T Consensus        85 ~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~  161 (280)
T PF13429_consen   85 IQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD  161 (280)
T ss_dssp             ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred             ccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence            777 7889999999999887665  456777888999999999999999999998764 235677888899999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976          166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES  245 (319)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  245 (319)
                      .++|.+.+++..+..+. |......++..+...|+.+++..+++...+.. +.+...+..+..++...|+.++|...|++
T Consensus       162 ~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  162 PDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             HHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence            99999999999987544 57778889999999999999999999888764 56777889999999999999999999998


Q ss_pred             hcc---CCchhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976          246 MEV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLK  279 (319)
Q Consensus       246 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  279 (319)
                      ...   .|+.....+..++...|+.++|..+.++...
T Consensus       240 ~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  240 ALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccccccccc
Confidence            765   2888899999999999999999999887654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.80  E-value=2.8e-15  Score=133.04  Aligned_cols=305  Identities=12%  Similarity=-0.027  Sum_probs=225.1

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      .+...+..+...+...|++++|+..++++.+... .+.. +..+..++...|+.++|...++++.+..+. +...+..+.
T Consensus        81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la  157 (765)
T PRK10049         81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYV  157 (765)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            3566777888899999999999999999988633 3566 888889999999999999999999986433 455555666


Q ss_pred             HHHHhcCChhHHHH----------------------------------------------HHHHHHhC-CCCCCcc-cHH
Q 020976           88 KCCFRNRKYKLGLE----------------------------------------------ILSAMKRK-GYTFDGF-GYC  119 (319)
Q Consensus        88 ~~~~~~~~~~~a~~----------------------------------------------~~~~~~~~-~~~~~~~-~~~  119 (319)
                      .++...+..+.|++                                              .++.+.+. ...|+.. .+.
T Consensus       158 ~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~  237 (765)
T PRK10049        158 QALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ  237 (765)
T ss_pred             HHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence            66655555554443                                              33333322 1112211 111


Q ss_pred             ----HHHHHHHHcCchHHHHHHHHHHHhCCCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHHhHHHH
Q 020976          120 ----TVIAAFVKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC---DKYTHTIL  191 (319)
Q Consensus       120 ----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l  191 (319)
                          ..+..+...|++++|+..|+.+...+.+ |+. ....+..++...|++++|...|+++.+.....   .......+
T Consensus       238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L  316 (765)
T PRK10049        238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL  316 (765)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence                1133456779999999999999887532 222 22335778999999999999999988654221   13445666


Q ss_pred             HHHHhccCChhHHHHHHHHHHhcCC-----------CCC---hhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhH
Q 020976          192 IDGLCKAGNIKGARLHLEYMNKIGF-----------DSN---LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTY  254 (319)
Q Consensus       192 ~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~  254 (319)
                      ..++...|++++|..+++.+.+...           .|+   ...+..+...+...|++++|+++++++...   ++..+
T Consensus       317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~  396 (765)
T PRK10049        317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR  396 (765)
T ss_pred             HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            7788999999999999999987531           122   124456777888999999999999987654   67788


Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976          255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI  317 (319)
Q Consensus       255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i  317 (319)
                      ..+...+...|++++|++.+++.+... +.+...+...+..+...|++++|..+++++.+...
T Consensus       397 ~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P  458 (765)
T PRK10049        397 IDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP  458 (765)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999998863 22467777788889999999999999999877543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.80  E-value=1.4e-15  Score=124.94  Aligned_cols=279  Identities=12%  Similarity=0.045  Sum_probs=215.7

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH--HHHHHHHhcCChhHHH
Q 020976           23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT--TIMKCCFRNRKYKLGL  100 (319)
Q Consensus        23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~  100 (319)
                      .|+++.|.+......+..-.| ...|.....+..+.|+++.|.+.+.++.+.  .|+.....  .....+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            599999998888766542222 223333345557899999999999999874  45554333  3356788999999999


Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccCh-------hhHHHHHHHHHhcCCHHHHHHHH
Q 020976          101 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI-------VSYNTLINLYCKEGKLEAAYLLL  173 (319)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~  173 (319)
                      +.++++.+.. |-++.....+...|.+.|++++|..++..+.+.+..++.       .+|..++.......+.+...+++
T Consensus       174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999886 667888899999999999999999999999987544222       12333344444455566667777


Q ss_pred             HHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---C
Q 020976          174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D  250 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~  250 (319)
                      +.+.+. .+.++.....+...+...|+.++|..++++..+.  +|+....  ++.+....++.+++.+..+...+.   |
T Consensus       253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~  327 (398)
T PRK10747        253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT  327 (398)
T ss_pred             HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence            666443 2347778889999999999999999999999874  4555322  233444669999999999887655   6


Q ss_pred             chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976          251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI  312 (319)
Q Consensus       251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (319)
                      +..+..+...+...+++++|.+.|+...+.  .|+...+..+..++.+.|+.++|.+++++-
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            778889999999999999999999999975  789999999999999999999999999875

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=1.6e-15  Score=117.90  Aligned_cols=307  Identities=16%  Similarity=0.219  Sum_probs=198.5

Q ss_pred             CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976            6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT   85 (319)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   85 (319)
                      .+.+..+|..+|.++++-...++|.+++.+-.....+.+..+||.+|.+-.-..+    .+++.+|....+.||..|+|.
T Consensus       203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa  278 (625)
T KOG4422|consen  203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA  278 (625)
T ss_pred             cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence            4567889999999999999999999999998887777889999999877654333    778889988889999999999


Q ss_pred             HHHHHHhcCChhH----HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH-HHHHHHHHHhC----CCc----cChhh
Q 020976           86 IMKCCFRNRKYKL----GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE-ATDYMEQMVTD----GVQ----LDIVS  152 (319)
Q Consensus        86 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~----~~~~~  152 (319)
                      ++.+..+.|+++.    |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++...    .++    .+...
T Consensus       279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F  358 (625)
T KOG4422|consen  279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF  358 (625)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence            9999999997655    56778888999999999999999998888887754 44445554432    122    23445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCc---HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHH
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEMEKQG----FECD---KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC  225 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  225 (319)
                      |...+..|.+..+.+.|.++..-+....    +.|+   ...|..+....|.....+.....|+.|.-.-+-|+..+...
T Consensus       359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~  438 (625)
T KOG4422|consen  359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH  438 (625)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence            6666677777777666666654433210    1111   12344444444555555555555555554444455555555


Q ss_pred             HHHHHHhcCCHHHHHHHHHhhccC--------------------------------------------------------
Q 020976          226 IVDRLGKDGKIDHAINVFESMEVK--------------------------------------------------------  249 (319)
Q Consensus       226 l~~~~~~~~~~~~a~~~~~~~~~~--------------------------------------------------------  249 (319)
                      ++++....|.++-..+++..+..-                                                        
T Consensus       439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~  518 (625)
T KOG4422|consen  439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ  518 (625)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence            555555455444444444333211                                                        


Q ss_pred             --CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCc----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          250 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR----ILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       250 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                        .+...+.++..+.+.|+.++|.++|..+.+.+-+    |......-+++.-.+.+....|...++-+...+
T Consensus       519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence              3344555556666777777777777776544322    222233345555566666777776666665444

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=6.7e-15  Score=114.56  Aligned_cols=303  Identities=11%  Similarity=0.105  Sum_probs=231.4

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hh-HHHHHHHHHhhC------------
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR--LR-TARWILKELGDS------------   74 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~-~a~~~~~~~~~~------------   74 (319)
                      +.+=|.|+.. ...|.+.++.-+|+.|.+.|++.+...-..|++..+-.+.  +- .-++.|-.|...            
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~  194 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA  194 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence            3445555554 4578899999999999999988887776666654433221  11 112222222221            


Q ss_pred             -------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCc
Q 020976           75 -------GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ  147 (319)
Q Consensus        75 -------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  147 (319)
                             -.+.+..++.++|.+.++-...+.|.+++++......+.+..+||.+|.+-.-..+    .+++.+|....+.
T Consensus       195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~  270 (625)
T KOG4422|consen  195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT  270 (625)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence                   12347789999999999999999999999999887779999999999977554333    7789999999899


Q ss_pred             cChhhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH-HHHHHHHHHh----cCCCC
Q 020976          148 LDIVSYNTLINLYCKEGKLEA----AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG-ARLHLEYMNK----IGFDS  218 (319)
Q Consensus       148 ~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~  218 (319)
                      ||..|||+++++..+.|+++.    |.+++.+|++-|+.|+..+|..+|..+++.++..+ +..++.++..    ..++|
T Consensus       271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp  350 (625)
T KOG4422|consen  271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP  350 (625)
T ss_pred             CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence            999999999999999998765    56788899999999999999999999999888755 3444444433    22332


Q ss_pred             ----ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCc
Q 020976          219 ----NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR  283 (319)
Q Consensus       219 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  283 (319)
                          +...|...+..|.+..+.+.|.++-.-+...           ...-|..+....++....+.-...++.|.-.-.-
T Consensus       351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~  430 (625)
T KOG4422|consen  351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF  430 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence                3455666777788888988888887655533           2334666777788888889999999999888788


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976          284 ILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI  317 (319)
Q Consensus       284 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i  317 (319)
                      |+..+...++++....|.++-..++|..+...|-
T Consensus       431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh  464 (625)
T KOG4422|consen  431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH  464 (625)
T ss_pred             CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence            8999999999999999999999999999988773

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1.2e-15  Score=124.62  Aligned_cols=281  Identities=14%  Similarity=0.007  Sum_probs=223.8

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHHH
Q 020976           24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLE  101 (319)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~  101 (319)
                      -+.++|+..|..+..+ +.-+......+..+|...+++++|.++|+.+.+...  .-+.++|.+.+.-+-   + +-++.
T Consensus       333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls  407 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALS  407 (638)
T ss_pred             HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHH
Confidence            3578899999996665 333557778899999999999999999999987421  125677777765432   2 22333


Q ss_pred             HH-HHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          102 IL-SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       102 ~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      .+ +.+.+.. +..+.+|.++..+|.-.++.+.|++.|++....  .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus       408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            33 4444443 667899999999999999999999999999985  34 6788999988899999999999999998865


Q ss_pred             CCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHH
Q 020976          180 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSS  256 (319)
Q Consensus       180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~  256 (319)
                      ... +...|.-+...|.+.++++.|+-.|+...+.+ +-+......+...+.+.|+.++|++++++....   |+..--.
T Consensus       485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~  562 (638)
T KOG1126|consen  485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH  562 (638)
T ss_pred             Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence            333 44566778888999999999999999999876 556677788888999999999999999987644   6666666


Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      .+..+...+++++|+..++++.+. ++-+...|..+...|.+.|+.+.|+.-|.-+-+.
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            677888899999999999999875 3335677888889999999999999888766543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.75  E-value=6.3e-14  Score=122.93  Aligned_cols=292  Identities=14%  Similarity=0.077  Sum_probs=165.6

Q ss_pred             HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976           17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY   96 (319)
Q Consensus        17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   96 (319)
                      ...+...|++++|+++|+++.+..+. +...+..++..+...++.++|++.++++...  .|+...+..++..+...++.
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~  185 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN  185 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence            44677778888888888888776443 5666667777788888888888888887764  44544453343333334555


Q ss_pred             hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHH-----------------------------------------
Q 020976           97 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT-----------------------------------------  135 (319)
Q Consensus        97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------------------------------------  135 (319)
                      .+|++.++++.+.. +-+...+..+...+.+.|-...|+                                         
T Consensus       186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~  264 (822)
T PRK14574        186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF  264 (822)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            55777777776653 333333333333333333222222                                         


Q ss_pred             -------HHHHHHHhC-C-CccChhhH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh
Q 020976          136 -------DYMEQMVTD-G-VQLDIVSY----NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK  202 (319)
Q Consensus       136 -------~~~~~~~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  202 (319)
                             .-++.+... + .++....|    .-.+-++...+++.++++.|+.+...+.+....+-..+..+|...++++
T Consensus       265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~  344 (822)
T PRK14574        265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE  344 (822)
T ss_pred             HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence                   222222211 0 01111111    1223455566667777777777766655444456666667777777777


Q ss_pred             HHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc------------------hhHHHHHH
Q 020976          203 GARLHLEYMNKIG-----FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS------------------FTYSSMVH  259 (319)
Q Consensus       203 ~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~~~~~l~~  259 (319)
                      +|..++..+....     .+++......|..++...+++++|..+++++....+                  ..+..++.
T Consensus       345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~  424 (822)
T PRK14574        345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ  424 (822)
T ss_pred             HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence            7777777665432     122333345666666677777777777666654211                  11233455


Q ss_pred             HHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          260 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      .+.-.|+..+|.+.++++.... +-|......+.+.+...|.+.+|++.++...
T Consensus       425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~  477 (822)
T PRK14574        425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE  477 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            5666666777777776665542 2266666666666666666666666665543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.74  E-value=5.8e-14  Score=105.44  Aligned_cols=287  Identities=14%  Similarity=0.097  Sum_probs=222.6

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh------hhHHHHHHHHHhcCCh
Q 020976           23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA------ITYTTIMKCCFRNRKY   96 (319)
Q Consensus        23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~   96 (319)
                      .++.++|.++|-+|.+... .+..+.-+|.+.|.+.|..++|+++.+.+.++   ||.      ...-.|.+-|...|-+
T Consensus        48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence            5678999999999998533 25667778999999999999999999999875   443      2344566678889999


Q ss_pred             hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccCh----hhHHHHHHHHHhcCCHHHHHHH
Q 020976           97 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI----VSYNTLINLYCKEGKLEAAYLL  172 (319)
Q Consensus        97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~  172 (319)
                      +.|+++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+..    ..|..+...+....+++.|..+
T Consensus       124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            99999999999865 445667888999999999999999999999887544332    2355666666778899999999


Q ss_pred             HHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--C
Q 020976          173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--D  250 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~  250 (319)
                      +.+..+.+.+ ....--.+.+.....|+++.|.+.++.+.+.+..--..+...+..+|...|+.++....+.++...  .
T Consensus       203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            9999887544 444445677888899999999999999999876556688899999999999999999999987765  4


Q ss_pred             chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhhhc
Q 020976          251 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR---HSGCRREAKKIQSKIRMAKI  317 (319)
Q Consensus       251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~i  317 (319)
                      +..-..+...-....-.+.|...+.+-+..  +|+...+..+++.-.   ..|...+-+..+++|....+
T Consensus       282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l  349 (389)
T COG2956         282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL  349 (389)
T ss_pred             ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence            444455544444445556777776666554  689999999988653   35557777777777765543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.74  E-value=7.8e-14  Score=107.67  Aligned_cols=282  Identities=16%  Similarity=0.149  Sum_probs=226.1

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 020976           23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI  102 (319)
Q Consensus        23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  102 (319)
                      .|++.+|+++..+-.+.+-.| ...|..-..+.-..|+.+.+-+++.+..+....++....-...+.....|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            689999999999988876553 4566667778888999999999999998864455667777778888999999999999


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChh-------hHHHHHHHHHhcCCHHHHHHHHHH
Q 020976          103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV-------SYNTLINLYCKEGKLEAAYLLLDE  175 (319)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~  175 (319)
                      +.++.+.+ +.++........+|.+.|++.....++..+.+.|.-.++.       +|..+++-....+..+.-...++.
T Consensus       176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            99999886 6678889999999999999999999999999987655543       466666666666666666666666


Q ss_pred             HHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc---cCCch
Q 020976          176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSF  252 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~  252 (319)
                      .... .+-++..-..++.-+.+.|+.++|.++..+..+.+..|+   ... .-.+.+-++.+.-.+..+.-.   ..++.
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~  329 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHPEDPL  329 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence            6543 344666777888889999999999999999998876666   222 223456666666665555443   23788


Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      .+.++...|.+.+.+.+|.+.|+..++.  .|+..+|..+..++.+.|+..+|.+.+++..
T Consensus       330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            9999999999999999999999988775  7899999999999999999999999887753

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.74  E-value=1.5e-13  Score=120.70  Aligned_cols=297  Identities=10%  Similarity=0.005  Sum_probs=199.1

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 020976           15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR   94 (319)
Q Consensus        15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (319)
                      .++..+...|+.++|+..+++.... ..........+...+...|++++|.++|+++.+..+. ++..+..++..+...+
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~  150 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG  150 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC
Confidence            6666777777777777777777621 1122333333455777778888888888888776433 4566667777777888


Q ss_pred             ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 020976           95 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD  174 (319)
Q Consensus        95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  174 (319)
                      +.++|++.++++...  .|+...+..++..+...++..+|++.++++.+.. |.+...+..+..++.+.|-...|.++..
T Consensus       151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~  227 (822)
T PRK14574        151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK  227 (822)
T ss_pred             CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            888888888887765  4444444344334434555556888888887763 3345555555555555554443333332


Q ss_pred             ------------------------------------------------HHHH-cCCCCcHH-----hHHHHHHHHhccCC
Q 020976          175 ------------------------------------------------EMEK-QGFECDKY-----THTILIDGLCKAGN  200 (319)
Q Consensus       175 ------------------------------------------------~~~~-~~~~~~~~-----~~~~l~~~~~~~~~  200 (319)
                                                                      .+.. .+..|...     ...-.+-++...++
T Consensus       228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r  307 (822)
T PRK14574        228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ  307 (822)
T ss_pred             hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence                                                            2221 11123211     11233456677889


Q ss_pred             hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC---------chhHHHHHHHHHccCChhHHH
Q 020976          201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---------SFTYSSMVHNLCKAKRLPSAS  271 (319)
Q Consensus       201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~  271 (319)
                      +.++++.++.+...+.+....+-..+.++|...+++++|..+++.+...+         ......|.-+|..++++++|.
T Consensus       308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~  387 (822)
T PRK14574        308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY  387 (822)
T ss_pred             HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence            99999999999988766555688899999999999999999999985432         222467899999999999999


Q ss_pred             HHHHHHHHcCC-----------ccCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          272 KLLLSCLKSGV-----------RILK---SAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       272 ~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      .+++++.+...           .||+   ..+..++..+.-.|+..+|++.++++....
T Consensus       388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a  446 (822)
T PRK14574        388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA  446 (822)
T ss_pred             HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999987422           1222   234456677889999999999999986653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.73  E-value=3.7e-14  Score=126.85  Aligned_cols=258  Identities=10%  Similarity=-0.026  Sum_probs=124.7

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC   89 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   89 (319)
                      ...|..+..++.. ++.++|+..|.+....  .|+......+...+...|++++|...|+++...  +|+...+..+..+
T Consensus       477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~a  551 (987)
T PRK09782        477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANT  551 (987)
T ss_pred             HHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHH
Confidence            3444444444444 4555555555554443  233333223333334555666666655555432  2333334444455


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976           90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA  169 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  169 (319)
                      +.+.|++++|.+.+++..+.. +.+...+..+.....+.|++++|...+++..+.  .|+...+..+..++.+.|++++|
T Consensus       552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA  628 (987)
T PRK09782        552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA  628 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence            555556666666655555442 212212222222223335666666666555553  23445555555555566666666


Q ss_pred             HHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976          170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK  249 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  249 (319)
                      ...+++.....+. +...+..+..++...|++++|...++...+.. +-+...+..+..++...|++++|...+++....
T Consensus       629 ~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        629 VSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            6666555554322 33444555555555566666666555555542 334455555555555566666666655555433


Q ss_pred             Cc---hhHHHHHHHHHccCChhHHHHHHHHH
Q 020976          250 DS---FTYSSMVHNLCKAKRLPSASKLLLSC  277 (319)
Q Consensus       250 ~~---~~~~~l~~~~~~~~~~~~a~~~~~~~  277 (319)
                      ++   .+............+++.+.+-+.+.
T Consensus       707 ~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~  737 (987)
T PRK09782        707 IDNQALITPLTPEQNQQRFNFRRLHEEVGRR  737 (987)
T ss_pred             CCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            22   22233333344444444444444443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.72  E-value=7.8e-14  Score=124.78  Aligned_cols=259  Identities=11%  Similarity=0.006  Sum_probs=197.6

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      +...|..+..++.. +++++|...+.+....  .|+......+...+...|++++|...++++...  +|+...+..+..
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~  550 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN  550 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence            56777878877776 7888899988887764  355444434455556889999999999987655  455555667777


Q ss_pred             HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG  203 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  203 (319)
                      .+.+.|+.++|...+++..... +.....+..+.......|++++|...+++..+.  .|+...+..+..++.+.|++++
T Consensus       551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de  627 (987)
T PRK09782        551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA  627 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence            8888999999999999988764 223333334444455669999999999999876  4567788888899999999999


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      |...+++..+.. +.+...+..+..++...|++++|+..+++....   ++..+..+..++...|++++|+..+++..+.
T Consensus       628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            999999998875 556677888888899999999999999987644   6778889999999999999999999999876


Q ss_pred             CCccC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          281 GVRIL-KSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       281 ~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      .  |+ ..+.........+..+++.|.+-+++.-
T Consensus       707 ~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        707 I--DNQALITPLTPEQNQQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             C--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            3  43 3455555666667777777777666543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.72  E-value=9.1e-14  Score=114.30  Aligned_cols=257  Identities=11%  Similarity=0.039  Sum_probs=200.4

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976           15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYN--ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR   92 (319)
Q Consensus        15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (319)
                      ....+..+.|+++.|.+.+.++.+.  .|+.....  .....+...|+++.|...++++.+..+. ++..+..+...|.+
T Consensus       123 laA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~  199 (398)
T PRK10747        123 LAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIR  199 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence            3344558899999999999999875  34543332  3467888999999999999999987643 68889999999999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976           93 NRKYKLGLEILSAMKRKGYTFDG-------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK  165 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (319)
                      .|++++|.+++..+.+.+..++.       .+|..++.......+.+...++++.+... .+.++.....+...+...|+
T Consensus       200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~  278 (398)
T PRK10747        200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDD  278 (398)
T ss_pred             HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCC
Confidence            99999999999999988643222       12333344444455566677777776544 34577888899999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976          166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES  245 (319)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  245 (319)
                      .++|.+++++..+.  .|+....  ++.+....++.+++.+..+...+.. +-|......+...+.+.+++++|.+.|+.
T Consensus       279 ~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~  353 (398)
T PRK10747        279 HDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRA  353 (398)
T ss_pred             HHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999874  4454322  3334446699999999999988764 55667788999999999999999999999


Q ss_pred             hccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          246 MEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       246 ~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      ....  +...+..+...+.+.|+.++|..++++.+..
T Consensus       354 al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        354 ALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            8754  6667788999999999999999999987653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.5e-13  Score=107.99  Aligned_cols=287  Identities=11%  Similarity=0.074  Sum_probs=217.6

Q ss_pred             HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCC
Q 020976           18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PNAITYTTIMKCCFRNRK   95 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~   95 (319)
                      .++......+++..=.+.....|.+-+...-+....+.-...|+++|+.+|+++.+..+-  -|..+|..++-  ++..+
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~  312 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhh
Confidence            345555677778877788888887655555555555666788999999999999886321  15567766653  33322


Q ss_pred             hhHHHHHHHH-HHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 020976           96 YKLGLEILSA-MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD  174 (319)
Q Consensus        96 ~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  174 (319)
                      -  .+.++.+ ....+ +-.+.|+..+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|.+-++
T Consensus       313 s--kLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  313 S--KLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             H--HHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence            1  2222222 22222 4456788888999999999999999999999874 3356789999999999999999999999


Q ss_pred             HHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---Cc
Q 020976          175 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DS  251 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~  251 (319)
                      ...+-.+. |...|-.+.++|.-.+.+.-|.-.|++..+.. |.|...|.+|..+|.+.++.++|+..|.+...-   +.
T Consensus       389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~  466 (559)
T KOG1155|consen  389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG  466 (559)
T ss_pred             HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence            99987655 88899999999999999999999999998874 667899999999999999999999999987654   45


Q ss_pred             hhHHHHHHHHHccCChhHHHHHHHHHHHc----CC-cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976          252 FTYSSMVHNLCKAKRLPSASKLLLSCLKS----GV-RI-LKSAQKAVVDGLRHSGCRREAKKIQSKI  312 (319)
Q Consensus       252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (319)
                      ..+..+...|-+.++.++|...+.+.++.    |. .| ......-|..-+.+.+++++|-.+..+.
T Consensus       467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~  533 (559)
T KOG1155|consen  467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV  533 (559)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            78999999999999999999999887763    32 22 2223333556677788888876655443

>TIGR00540 hemY_coli hemY protein

Probab=99.70  E-value=1.7e-13  Score=113.29  Aligned_cols=270  Identities=12%  Similarity=-0.001  Sum_probs=195.2

Q ss_pred             CcchHh-HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976            7 TPCTAT-FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT   85 (319)
Q Consensus         7 ~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   85 (319)
                      .|+... +-....++.+.|+++.|.+.+.+..+....+...........+...|+++.|.+.++.+.+..+. +...+..
T Consensus       114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~l  192 (409)
T TIGR00540       114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKL  192 (409)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence            454333 34446678888999999999999877533333334444578888999999999999999987543 6788899


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHH-HHHHHH---HHcCchHHHHHHHHHHHhCCC---ccChhhHHHHHH
Q 020976           86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC-TVIAAF---VKIGRLKEATDYMEQMVTDGV---QLDIVSYNTLIN  158 (319)
Q Consensus        86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~  158 (319)
                      +...+...|++++|.+.+..+.+.+.. +...+. .-...+   ...+..+.....+..+.....   +.+...+..+..
T Consensus       193 l~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~  271 (409)
T TIGR00540       193 AEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAE  271 (409)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH
Confidence            999999999999999999999988743 333332 111111   222333333345555544321   237788899999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCcHHhH-HHHHHHHhccCChhHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCC
Q 020976          159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTH-TILIDGLCKAGNIKGARLHLEYMNKIGFDSNL--EAYNCIVDRLGKDGK  235 (319)
Q Consensus       159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~  235 (319)
                      .+...|+.++|.+++++..+..+......+ ..........++.+.+.+.++...+.. +-+.  ....++...+.+.|+
T Consensus       272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~  350 (409)
T TIGR00540       272 HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGE  350 (409)
T ss_pred             HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHccc
Confidence            999999999999999999986443221111 111222234578888888888887753 3444  566788999999999


Q ss_pred             HHHHHHHHHh--hc--cCCchhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976          236 IDHAINVFES--ME--VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK  279 (319)
Q Consensus       236 ~~~a~~~~~~--~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  279 (319)
                      +++|.+.|+.  ..  .+++..+..+...+.+.|+.++|.+++++.+.
T Consensus       351 ~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       351 FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999993  42  45777888999999999999999999998654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.67  E-value=2.5e-12  Score=108.96  Aligned_cols=304  Identities=13%  Similarity=0.078  Sum_probs=197.6

Q ss_pred             CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976            6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT   85 (319)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   85 (319)
                      +.|.....-.....+.-.|++++|.+++.+..+.... +...|.+|...|-..|+.+++...+-....... -|...|..
T Consensus       135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~  212 (895)
T KOG2076|consen  135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKR  212 (895)
T ss_pred             cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHH
Confidence            4444555555555566669999999999999887444 788899999999999999999887766655433 36788888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhH----HHHHHHHH
Q 020976           86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY----NTLINLYC  161 (319)
Q Consensus        86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~  161 (319)
                      +.....+.|+++.|.-.|.+.++.. +++...+---...|-+.|+...|...|.++.....+.|..-+    ..+++.+.
T Consensus       213 ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~  291 (895)
T KOG2076|consen  213 LADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI  291 (895)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence            8888888888999998898888775 555555555566777788888888888777765321121111    11233333


Q ss_pred             hcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHHHhccCC----------------------------------------
Q 020976          162 KEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGN----------------------------------------  200 (319)
Q Consensus       162 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~----------------------------------------  200 (319)
                      ..++.+.|.+.+......+ -..+...++.++..+.+...                                        
T Consensus       292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~  371 (895)
T KOG2076|consen  292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG  371 (895)
T ss_pred             HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence            4444444544444433210 01122223333333333333                                        


Q ss_pred             ---------------------hhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC----Cchh
Q 020976          201 ---------------------IKGARLHLEYMNKIGF--DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFT  253 (319)
Q Consensus       201 ---------------------~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~  253 (319)
                                           .+....+...+.+.++  .-+...|.-+..+|...|++.+|+.+|..+...    +...
T Consensus       372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v  451 (895)
T KOG2076|consen  372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV  451 (895)
T ss_pred             CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence                                 3333333333343332  223455667778888888888888888877754    6667


Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      |..+..+|...|.+++|.+.+.+.+.... -+...-..|...+.+.|+.++|.+.+..+.
T Consensus       452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  452 WYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            88888888888888888888888876522 244556667777788888888888877654

>PRK12370 invasion protein regulator; Provisional

Probab=99.64  E-value=1.2e-12  Score=112.40  Aligned_cols=266  Identities=11%  Similarity=-0.004  Sum_probs=178.9

Q ss_pred             CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 020976           42 VPELVTYNILIKGLCK-----AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR---------NRKYKLGLEILSAMK  107 (319)
Q Consensus        42 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~  107 (319)
                      ..+...|...+.+...     .+++++|.+.|++..+..+. +...|..+..++..         .+++++|...+++..
T Consensus       253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            3466666555555322     23467888899988875322 45556655554432         234788999999888


Q ss_pred             hCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh
Q 020976          108 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT  187 (319)
Q Consensus       108 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  187 (319)
                      +.+ +-+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+..+. +...
T Consensus       332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~  408 (553)
T PRK12370        332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA  408 (553)
T ss_pred             hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence            875 5567778888888888899999999999988864 345667788888899999999999999998887544 2223


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc---hhHHHHHHHHHcc
Q 020976          188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKA  264 (319)
Q Consensus       188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~  264 (319)
                      +..++..+...|++++|...++++.+...+.+...+..+..++...|+.++|...+.++....+   ...+.+...|...
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN  488 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence            3334445666788999999998887654222445567777888889999999999988765533   3445555566666


Q ss_pred             CChhHHHHHHHHHHHc-CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          265 KRLPSASKLLLSCLKS-GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       265 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      |  +.|...++++.+. ...+....+  .-..+.-.|+.+.+..+ +++.+.+
T Consensus       489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            6  4777777776653 122222223  33344456777776666 6666553

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=2.7e-13  Score=111.15  Aligned_cols=267  Identities=11%  Similarity=0.027  Sum_probs=211.2

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHH-HHHHhhCCCCCChhhHHHHH
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRTARWI-LKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~   87 (319)
                      .....+..+|...+++++|.++|+.+.+...  .-+..+|.+.+.-+-+    +-++.. -+.+.+. .+-.+.+|..+.
T Consensus       354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~G  428 (638)
T KOG1126|consen  354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALG  428 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhc
Confidence            4556778899999999999999999987531  1367888888765532    122222 2333333 233689999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976           88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE  167 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  167 (319)
                      ++|.-+++.+.|++.|++..+.+ +-...+|+.+..-+....++|.|...|+...... +-+-.+|.-+.-.|.+.++++
T Consensus       429 NcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e  506 (638)
T KOG1126|consen  429 NCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLE  506 (638)
T ss_pred             chhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhh
Confidence            99999999999999999999875 4478889999999999999999999999987641 123344455677899999999


Q ss_pred             HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      .|+-.|++..+-++. +......+...+.+.|+.++|++++++....+ +.|+..--..+..+...+++++|+..++++.
T Consensus       507 ~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk  584 (638)
T KOG1126|consen  507 FAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELK  584 (638)
T ss_pred             HHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            999999999886555 66677778888899999999999999998876 4455555556677888999999999999887


Q ss_pred             cC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCH
Q 020976          248 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK  286 (319)
Q Consensus       248 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  286 (319)
                      ..   +...|..+...|.+.|+.+.|+.-|-.+.+...+++.
T Consensus       585 ~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  585 ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            54   6778999999999999999999999999887555443

>PRK12370 invasion protein regulator; Provisional

Probab=99.63  E-value=1.7e-12  Score=111.37  Aligned_cols=264  Identities=11%  Similarity=0.021  Sum_probs=156.8

Q ss_pred             chHhHHHHHHHHhh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHhhC
Q 020976            9 CTATFNIMLNGLCK-----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA---------GRLRTARWILKELGDS   74 (319)
Q Consensus         9 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~   74 (319)
                      +...|...+.+...     .+++++|++.|++..+..+. +...|..+..++...         +++++|...+++..+.
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l  333 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL  333 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence            34455555555322     13456777788777765332 445565555554422         3367788888877775


Q ss_pred             CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHH
Q 020976           75 GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN  154 (319)
Q Consensus        75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  154 (319)
                      .+. +..++..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+.
T Consensus       334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~  410 (553)
T PRK12370        334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI  410 (553)
T ss_pred             CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence            433 56677777777777788888888888877764 445666777777777888888888888887775322 222333


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 020976          155 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG  234 (319)
Q Consensus       155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  234 (319)
                      .++..+...|++++|...+++......+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|...|
T Consensus       411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g  489 (553)
T PRK12370        411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS  489 (553)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH
Confidence            3444556677788888887777654322234445666667777888888888877765432 222333444555556666


Q ss_pred             CHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          235 KIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       235 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                        +.|...++.+...   .......+...+.-.|+.+.+..+ +++.+.
T Consensus       490 --~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        490 --ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             --HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence              3666656554432   111111133344445565555544 666554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.63  E-value=7.4e-12  Score=106.16  Aligned_cols=270  Identities=13%  Similarity=0.053  Sum_probs=187.5

Q ss_pred             CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976            7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI   86 (319)
Q Consensus         7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   86 (319)
                      +.+...|..|...|-+.|+.+++...+-..-..+. -|...|..+.....+.|++++|.-.|.+..+.. +++...+-.-
T Consensus       170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~er  247 (895)
T KOG2076|consen  170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYER  247 (895)
T ss_pred             ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHH
Confidence            34566788888888888888888777655544433 366778888888888888888888888887754 2355555555


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHH----HHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHHH
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC----TVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYC  161 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~  161 (319)
                      ...|-+.|+...|...|.++.+..-+.|..-+.    ..++.+...++.+.|.+.++..... +-..+...++.++..+.
T Consensus       248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l  327 (895)
T KOG2076|consen  248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL  327 (895)
T ss_pred             HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence            667777888888888888777664211222122    2344455556667777777766552 22234445666666666


Q ss_pred             hcCCHHHHHHHHHHHHH-------------------------------------------------------------cC
Q 020976          162 KEGKLEAAYLLLDEMEK-------------------------------------------------------------QG  180 (319)
Q Consensus       162 ~~~~~~~a~~~~~~~~~-------------------------------------------------------------~~  180 (319)
                      +..+++.+......+..                                                             ..
T Consensus       328 ~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n  407 (895)
T KOG2076|consen  328 KNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN  407 (895)
T ss_pred             HhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc
Confidence            66666666555544433                                                             12


Q ss_pred             C--CCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc---hhHH
Q 020976          181 F--ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYS  255 (319)
Q Consensus       181 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~  255 (319)
                      .  .-+...|.-+..++...|++.+|..++..+......-+...|-.+..+|...|..++|.+.++.+....|   ..--
T Consensus       408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri  487 (895)
T KOG2076|consen  408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI  487 (895)
T ss_pred             CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh
Confidence            1  1133457778889999999999999999999875445567899999999999999999999999876644   4455


Q ss_pred             HHHHHHHccCChhHHHHHHHHHH
Q 020976          256 SMVHNLCKAKRLPSASKLLLSCL  278 (319)
Q Consensus       256 ~l~~~~~~~~~~~~a~~~~~~~~  278 (319)
                      .|...+.+.|+.++|.+.+..+.
T Consensus       488 ~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  488 TLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             hHHHHHHhcCCHHHHHHHHhccc
Confidence            66777889999999999998875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.62  E-value=1.7e-12  Score=99.55  Aligned_cols=200  Identities=14%  Similarity=0.066  Sum_probs=139.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      ....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            45666777777777888888888887776643 2245666777777777788888888887777654 445556667777


Q ss_pred             HHHHcCchHHHHHHHHHHHhCCC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK  202 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  202 (319)
                      .+...|++++|...+++...... +.....+..+..++...|++++|...+.+..+.... +...+..+...+...|+++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence            77777888888888877776421 223345666677777888888888888877765332 4556667777777888888


Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      +|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus       187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            888888877765 24455666666777777788888877766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.62  E-value=1.3e-13  Score=103.88  Aligned_cols=227  Identities=12%  Similarity=0.011  Sum_probs=194.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 020976           83 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK  162 (319)
Q Consensus        83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (319)
                      -+.+.++|.+.|.+.+|.+.++.-.+.  .|-+.||..|-..|.+..++..|+.++.+-.+. .+.++....-+.+.+..
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence            467889999999999999999988877  677889999999999999999999999998886 45566656678888999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 020976          163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV  242 (319)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  242 (319)
                      .++.++|.++|+...+.... ++.....+...|.-.++++-|..+++++.+.|+ -+++.|..+.-+|...++++-++..
T Consensus       303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence            99999999999999886433 666777777788889999999999999999995 6778999999999999999999999


Q ss_pred             HHhhccC------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          243 FESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       243 ~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      |++....      ...+|-.+....+..|++..|.+.|+-.+..+.. +...++.+...-.+.|+.++|+.+++..+..
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            9876533      4567888888889999999999999999887443 6678888888889999999999999877654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.60  E-value=1.9e-11  Score=94.70  Aligned_cols=268  Identities=10%  Similarity=0.015  Sum_probs=216.3

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC   90 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (319)
                      ..|..-..+.-+.|+.+.+-.++.+.-+.--.++...+-+..+.....|+.+.|..-++++.+.+.. ++.......++|
T Consensus       119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y  197 (400)
T COG3071         119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAY  197 (400)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHH
Confidence            4466667778889999999999999988644567778888888999999999999999999987644 788899999999


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc
Q 020976           91 FRNRKYKLGLEILSAMKRKGYTFDG-------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE  163 (319)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  163 (319)
                      .+.|++.....++.++.+.+.-.+.       .+|..+++-....+..+.-...++..... .+.++..-..++.-+.+.
T Consensus       198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l  276 (400)
T COG3071         198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRL  276 (400)
T ss_pred             HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHc
Confidence            9999999999999999998855443       45677777666667777767777777665 445666777888899999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976          164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF  243 (319)
Q Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  243 (319)
                      |+.++|.++..+..+.+..|.   ... .-.+.+.++.+.-.+..+.-.+. .+.++..+..+...|.+.+.+.+|...|
T Consensus       277 ~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~l  351 (400)
T COG3071         277 GDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEAL  351 (400)
T ss_pred             CChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHH
Confidence            999999999999999877766   222 22445778888877777776654 2455588899999999999999999999


Q ss_pred             HhhccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccC
Q 020976          244 ESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL  285 (319)
Q Consensus       244 ~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  285 (319)
                      +...+.  +...|+.+..++.+.|+..+|.++.++.+..-.+|+
T Consensus       352 eaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         352 EAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             HHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            977644  888999999999999999999999998775544443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.60  E-value=2.7e-12  Score=98.40  Aligned_cols=194  Identities=13%  Similarity=0.073  Sum_probs=82.9

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 020976           81 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY  160 (319)
Q Consensus        81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (319)
                      ..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+...+
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~  109 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence            334444444444455555555444444332 2233344444444444455555555544444431 12233344444444


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 020976          161 CKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA  239 (319)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  239 (319)
                      ...|++++|.+.+.+.......+ ....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence            44455555555544444321111 12233334444444445555554444444432 22233444444444444555554


Q ss_pred             HHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHH
Q 020976          240 INVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSC  277 (319)
Q Consensus       240 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~  277 (319)
                      ...+++....   ++..+..+...+...|+.++|..+.+.+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4444443221   2333333444444444444444444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=2.8e-11  Score=95.59  Aligned_cols=248  Identities=15%  Similarity=0.086  Sum_probs=175.4

Q ss_pred             CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CcccHHHHHHHHHHcCchHHHH
Q 020976           59 GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF---DGFGYCTVIAAFVKIGRLKEAT  135 (319)
Q Consensus        59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~  135 (319)
                      .+.+++..-.+.+...|.+-+...-+....+.....|+++|+.+|+++.+.. |-   |..+|..++-.  +..+-  .+
T Consensus       241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv--~~~~s--kL  315 (559)
T KOG1155|consen  241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYV--KNDKS--KL  315 (559)
T ss_pred             HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHH--HhhhH--HH
Confidence            3444444444555555554333333333334445556666666666666552 21   23333333321  11111  11


Q ss_pred             HHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976          136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG  215 (319)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  215 (319)
                      .++-+-...--+--+.|...+..-|.-.++.++|...|+...+.++. ....|+.+..-|....+...|...++..++.+
T Consensus       316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~  394 (559)
T KOG1155|consen  316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN  394 (559)
T ss_pred             HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence            11111111101123345566677777888999999999999987654 56678888888999999999999999999976


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHH
Q 020976          216 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV  292 (319)
Q Consensus       216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  292 (319)
                       |.|...|-.+.++|.-.+.+.-|+-.|++...-   |+..|.+|..+|.+.++.++|++.|++....|-. +...+..+
T Consensus       395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~L  472 (559)
T KOG1155|consen  395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRL  472 (559)
T ss_pred             -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHH
Confidence             678899999999999999999999999987643   9999999999999999999999999999987654 66889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q 020976          293 VDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       293 ~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      .+.|-+.++.++|...+++-.+
T Consensus       473 akLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  473 AKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999999887544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.60  E-value=5.2e-11  Score=97.99  Aligned_cols=299  Identities=13%  Similarity=0.041  Sum_probs=191.7

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR   92 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (319)
                      |......--..|..+....+|++.... .+-....|-.....+...|+...|..++....+.... +...|-.-++.-..
T Consensus       553 Wlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~e  630 (913)
T KOG0495|consen  553 WLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFE  630 (913)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhc
Confidence            333333333345555555555555544 2223444555555555666666676666666665333 55666666666666


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 020976           93 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL  172 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  172 (319)
                      ..+++.|..+|.+....  .|+...|.--+..-.-.+..++|++++++..+. ++.-...|..+.+.+.+.++.+.|.+.
T Consensus       631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~a  707 (913)
T KOG0495|consen  631 NDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREA  707 (913)
T ss_pred             cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence            66777777777666554  455555555555555556677777777766664 332334556666666677777777766


Q ss_pred             HHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---
Q 020976          173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---  249 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  249 (319)
                      |..-.+. ++.....|..+...--+.|.+-.|..++++..-.+ +.+...|...|++-.+.|+.+.|..+..+....   
T Consensus       708 Y~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~  785 (913)
T KOG0495|consen  708 YLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPS  785 (913)
T ss_pred             HHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            6655443 22244556666666667777888888888777665 566777888888888888888777666544211   


Q ss_pred             ------------------------------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 020976          250 ------------------------------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS  299 (319)
Q Consensus       250 ------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (319)
                                                    |+.+.-.+...|-...++++|.+.|.+.++.+.. +..+|..+..-+.+.
T Consensus       786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~h  864 (913)
T KOG0495|consen  786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRH  864 (913)
T ss_pred             cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHh
Confidence                                          6666777777777778888888888888876432 557788888888888


Q ss_pred             CCHHHHHHHHHHHHhhhccC
Q 020976          300 GCRREAKKIQSKIRMAKISH  319 (319)
Q Consensus       300 g~~~~a~~~~~~~~~~~i~h  319 (319)
                      |.-+.-.+++.+.......|
T Consensus       865 G~eed~kev~~~c~~~EP~h  884 (913)
T KOG0495|consen  865 GTEEDQKEVLKKCETAEPTH  884 (913)
T ss_pred             CCHHHHHHHHHHHhccCCCC
Confidence            88888888888877766655

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.59  E-value=3.7e-12  Score=100.48  Aligned_cols=278  Identities=15%  Similarity=0.061  Sum_probs=203.3

Q ss_pred             HHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976           19 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK--AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY   96 (319)
Q Consensus        19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   96 (319)
                      -+.++|+++.|++++..+.+..-+.....-+.|-..+.-  -+++..|.+.-+...... .-++.....-.......|++
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence            477889999999999888765433333333333322222  346777877777665432 12333333333444567899


Q ss_pred             hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976           97 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM  176 (319)
Q Consensus        97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  176 (319)
                      ++|.+.|.+.....-.-....|+ +...+-..|++++|+.+|-++... +..+..+...+...|....+...|++++.+.
T Consensus       507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            99999999988664222222232 333567789999999999887654 2346777888889999999999999999887


Q ss_pred             HHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh--ccCCchhH
Q 020976          177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM--EVKDSFTY  254 (319)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~  254 (319)
                      ... ++-|+...+.+...|-+.|+-.+|.+.+-.--+. ++-+.++...|...|....-+++++..|++.  ..|+..-|
T Consensus       585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw  662 (840)
T KOG2003|consen  585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW  662 (840)
T ss_pred             ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence            654 4457888999999999999999998876554433 5778899999999999999999999999975  46788889


Q ss_pred             HHHHHHH-HccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCH
Q 020976          255 SSMVHNL-CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR  302 (319)
Q Consensus       255 ~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  302 (319)
                      ..++..| .+.|++.+|.++++...+. ++.|......+++.+...|..
T Consensus       663 qlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  663 QLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence            8887654 5689999999999998765 666888888899888877753

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=7.6e-12  Score=94.31  Aligned_cols=256  Identities=13%  Similarity=0.087  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc------cHHH
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF------GYCT  120 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~  120 (319)
                      .|-.=++.+ -.++.++|.++|-+|.+... -+..+--+|.+.|-+.|..+.|+.+.+.+.++   ||..      ..-.
T Consensus        38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~q  112 (389)
T COG2956          38 DYVKGLNFL-LSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQ  112 (389)
T ss_pred             HHHhHHHHH-hhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence            343333333 35789999999999998532 25666678889999999999999999998865   3332      2334


Q ss_pred             HHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----HhHHHHHHHHh
Q 020976          121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK----YTHTILIDGLC  196 (319)
Q Consensus       121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~  196 (319)
                      |..-|...|-++.|+.+|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+..+..    ..|.-+...+.
T Consensus       113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~  191 (389)
T COG2956         113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL  191 (389)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence            5566888999999999999998864 235667888999999999999999999999887665443    35666777777


Q ss_pred             ccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc----hhHHHHHHHHHccCChhHHHH
Q 020976          197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPSASK  272 (319)
Q Consensus       197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~  272 (319)
                      ...+++.|..++.+..+.+ +.....-..+.+.+...|+++.|.+.++.+.+.|+    .+...|..+|.+.|+.++...
T Consensus       192 ~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         192 ASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN  270 (389)
T ss_pred             hhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            7789999999999998875 45566667788889999999999999999988765    466778889999999999999


Q ss_pred             HHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976          273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK  311 (319)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  311 (319)
                      .+.++.+...  ....-..+.+......-.+.|..++.+
T Consensus       271 fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~  307 (389)
T COG2956         271 FLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTR  307 (389)
T ss_pred             HHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHH
Confidence            9999987643  333334444433334444555544433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.58  E-value=6.5e-12  Score=107.31  Aligned_cols=304  Identities=14%  Similarity=0.052  Sum_probs=211.1

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCh-
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGL----QKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS---GHAPNA-   80 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-   80 (319)
                      |...|-.+...+... +...++..|...    ...+..+.+...|.+...+...|++++|...|......   ...++. 
T Consensus       413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~  491 (1018)
T KOG2002|consen  413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG  491 (1018)
T ss_pred             cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence            455565555555443 333446666543    33444466778888888888888888888888877654   112222 


Q ss_pred             -----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH
Q 020976           81 -----ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT  155 (319)
Q Consensus        81 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  155 (319)
                           .+--.+.++.-..++++.|.+.|..+.+.. +--...|..++-.....+...+|...+....... ..++..++.
T Consensus       492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl  569 (1018)
T KOG2002|consen  492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL  569 (1018)
T ss_pred             ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence                 223344555666678888888888887662 2223334444433334567778888888877652 345566777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHHHhcc------------CChhHHHHHHHHHHhcCCCCChhh
Q 020976          156 LINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKA------------GNIKGARLHLEYMNKIGFDSNLEA  222 (319)
Q Consensus       156 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~  222 (319)
                      +...+.+...+..|.+-|..+.+.- ..+|..+.-.|...|...            +..++|.++|..+++.. +.|...
T Consensus       570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yA  648 (1018)
T KOG2002|consen  570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYA  648 (1018)
T ss_pred             HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhh
Confidence            7778888888888888777665432 234666655555544322            34678888888888765 667777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHc-CCccCHHHHHHHHHHHHh
Q 020976          223 YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSAQKAVVDGLRH  298 (319)
Q Consensus       223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~  298 (319)
                      -+-+.-+++..|++..|..+|.++.+.   ...+|-.+.++|...|++..|+++|+...+. ....+......|.+++.+
T Consensus       649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~  728 (1018)
T KOG2002|consen  649 ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE  728 (1018)
T ss_pred             ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence            788888899999999999999988865   5688999999999999999999999987765 445577888999999999


Q ss_pred             cCCHHHHHHHHHHHHhhh
Q 020976          299 SGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       299 ~g~~~~a~~~~~~~~~~~  316 (319)
                      .|.+.+|.+.+.......
T Consensus       729 ~~~~~eak~~ll~a~~~~  746 (1018)
T KOG2002|consen  729 AGKLQEAKEALLKARHLA  746 (1018)
T ss_pred             hhhHHHHHHHHHHHHHhC
Confidence            999999998887765543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.58  E-value=3.1e-12  Score=109.22  Aligned_cols=309  Identities=14%  Similarity=0.061  Sum_probs=231.4

Q ss_pred             CCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhC---CCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 020976            3 CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH---GFVPE------LVTYNILIKGLCKAGRLRTARWILKELGD   73 (319)
Q Consensus         3 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   73 (319)
                      +.+-.+-++..|.+...+...|++..|...|......   ...++      +.+--.+....-..++++.|.+.|..+..
T Consensus       445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk  524 (1018)
T KOG2002|consen  445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK  524 (1018)
T ss_pred             HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            3445577889999999999999999999999988664   12222      22334456666677899999999999988


Q ss_pred             CCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCC-CccChh
Q 020976           74 SGHAPN-AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIV  151 (319)
Q Consensus        74 ~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~  151 (319)
                      .  .|. +..|..++-.....+...+|...+....... ..++..+..+...+.+...+..|.+-|+.+.+.- ..+|+.
T Consensus       525 e--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y  601 (1018)
T KOG2002|consen  525 E--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY  601 (1018)
T ss_pred             H--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence            5  344 3445555433334577889999999888765 6677788888889999999999999888776641 235666


Q ss_pred             hHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC
Q 020976          152 SYNTLINLYCK------------EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN  219 (319)
Q Consensus       152 ~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  219 (319)
                      +.-.|...|.+            .+..++|+++|.+.++..+. +...-+-+...++..|++..|..+|..+.+.. .-.
T Consensus       602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~  679 (1018)
T KOG2002|consen  602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDF  679 (1018)
T ss_pred             HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhC
Confidence            66666665542            34577899999999987655 77777888888999999999999999999874 345


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHH
Q 020976          220 LEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD  294 (319)
Q Consensus       220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  294 (319)
                      ..+|..+.++|...|++..|+++|+.....     ++.+.+.|..++.+.|.+.+|.+.+...+...+......|+..+.
T Consensus       680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v  759 (1018)
T KOG2002|consen  680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV  759 (1018)
T ss_pred             CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence            578899999999999999999999976543     788999999999999999999999988877644434445554433


Q ss_pred             HH------------------HhcCCHHHHHHHHHHHHhhh
Q 020976          295 GL------------------RHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       295 ~~------------------~~~g~~~~a~~~~~~~~~~~  316 (319)
                      ..                  ...+..+.|.++|.+|...+
T Consensus       760 ~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~  799 (1018)
T KOG2002|consen  760 LKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG  799 (1018)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            21                  11344566777777776543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.57  E-value=5.7e-11  Score=99.14  Aligned_cols=291  Identities=18%  Similarity=0.132  Sum_probs=208.2

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc--
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN--   93 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--   93 (319)
                      ....+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+.+.++. |..-|..+..+..-.  
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence            446678899999999999886554 4445667788889999999999999999999998533 455555555555222  


Q ss_pred             ---CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCch-HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976           94 ---RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL-KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA  169 (319)
Q Consensus        94 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  169 (319)
                         .+.+...++|+++...-  |.......+.-.+.....+ ..+...+..+...|+|   .+|+.+-..|......+-.
T Consensus        88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence               25677788898887663  4433333333222222223 3455666777777765   3567777777666555556


Q ss_pred             HHHHHHHHHc----C----------CCCcH--HhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 020976          170 YLLLDEMEKQ----G----------FECDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD  233 (319)
Q Consensus       170 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  233 (319)
                      .+++......    +          -.|+.  .++..+...|...|++++|..+++..++.. |..+..|..-...+-..
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~  241 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence            6666665432    1          12333  345666788889999999999999999874 33468888889999999


Q ss_pred             CCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHH--------HHHHHHHHHHhcCCH
Q 020976          234 GKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS--------AQKAVVDGLRHSGCR  302 (319)
Q Consensus       234 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~  302 (319)
                      |++.+|.+.++.....   |-..-+..+..+.+.|++++|.+++....+.+..|-..        .......+|.+.|++
T Consensus       242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~  321 (517)
T PF12569_consen  242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY  321 (517)
T ss_pred             CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence            9999999999988866   55666777888899999999999999988776544221        224566789999999


Q ss_pred             HHHHHHHHHHHh
Q 020976          303 REAKKIQSKIRM  314 (319)
Q Consensus       303 ~~a~~~~~~~~~  314 (319)
                      ..|++-|..+.+
T Consensus       322 ~~ALk~~~~v~k  333 (517)
T PF12569_consen  322 GLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHH
Confidence            999988877654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=3.4e-11  Score=95.72  Aligned_cols=190  Identities=15%  Similarity=0.112  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhc
Q 020976          118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK  197 (319)
Q Consensus       118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  197 (319)
                      |.-+...|....+.++..+.|....+.+ +-++.+|..-.+...-.+++++|..=|++.+...+. +...|..+.-+..+
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr  440 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYR  440 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHH
Confidence            5556666777777888888888877763 346667777777777788888888888888775433 45566666666678


Q ss_pred             cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---------Cch--hHHHHHHHHHccCC
Q 020976          198 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSF--TYSSMVHNLCKAKR  266 (319)
Q Consensus       198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~--~~~~l~~~~~~~~~  266 (319)
                      .+.++++...|++..+. +|..++.|+.....+...++++.|.+.|+.....         ++.  +.-.++. +--.++
T Consensus       441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d  518 (606)
T KOG0547|consen  441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKED  518 (606)
T ss_pred             HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhh
Confidence            88999999999998875 6777889999999999999999999999876643         111  1112221 123478


Q ss_pred             hhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976          267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI  312 (319)
Q Consensus       267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (319)
                      +..|..++.+..+...+ ....|..|...-...|+.++|+++|++-
T Consensus       519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            89999999998876544 4567889999999999999999999874

>PF13041 PPR_2: PPR repeat family

Probab=99.55  E-value=2e-14  Score=80.64  Aligned_cols=50  Identities=44%  Similarity=0.901  Sum_probs=38.8

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK   57 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   57 (319)
                      ||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67777777777777777777777777777777777777777777777754

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.55  E-value=1.8e-11  Score=96.66  Aligned_cols=183  Identities=11%  Similarity=0.055  Sum_probs=144.7

Q ss_pred             cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHH
Q 020976          128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH  207 (319)
Q Consensus       128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  207 (319)
                      .|++++|...+++.....-......|| +.-.+...|+.++|++.|-++..- +.-+......+...|....+..+|+++
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            478899999999888753222222233 334567789999999999877543 223666777888889888999999999


Q ss_pred             HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc---cCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc
Q 020976          208 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI  284 (319)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  284 (319)
                      +.+.... ++.|+.++..|...|-+.|+-..|.++.-.--   ..+..+...|...|....-+++++.+|++..-  +.|
T Consensus       581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp  657 (840)
T KOG2003|consen  581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP  657 (840)
T ss_pred             HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence            8877654 56778899999999999999999998876433   23888888899999999999999999998753  689


Q ss_pred             CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhh
Q 020976          285 LKSAQKAVVDGL-RHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       285 ~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~  315 (319)
                      +..-|..++..| .+.|++++|.++++.+.++
T Consensus       658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            999999888755 6799999999999988764

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.53  E-value=7.5e-13  Score=111.85  Aligned_cols=264  Identities=14%  Similarity=0.158  Sum_probs=143.7

Q ss_pred             CCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976            2 ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI   81 (319)
Q Consensus         2 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   81 (319)
                      ...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.           .|.+.
T Consensus        17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD   84 (1088)
T KOG4318|consen   17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD   84 (1088)
T ss_pred             HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence            34567777777777777777777777766 7777666656666667777777766666665554           46667


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHH
Q 020976           82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLY  160 (319)
Q Consensus        82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~  160 (319)
                      +|..|..+|...||... .+..++           ....+...+...|.-.....++..+.-. +.-||.   ...+...
T Consensus        85 tyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illl  149 (1088)
T KOG4318|consen   85 TYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLL  149 (1088)
T ss_pred             HHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHH
Confidence            77777777777776544 111111           1111222222233222222222222111 111222   2233333


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 020976          161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA  239 (319)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  239 (319)
                      .-.|-++.+.+++..+.......   ++..+++.+.... .+++...+.....+   .|+..+|..++.+....|+.+.|
T Consensus       150 v~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~A  223 (1088)
T KOG4318|consen  150 VLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGA  223 (1088)
T ss_pred             HHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhH
Confidence            44455555555554443221111   1111233333222 22333333333322   46777777777777777777777


Q ss_pred             HHHHHhhccC----CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCC
Q 020976          240 INVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC  301 (319)
Q Consensus       240 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  301 (319)
                      ..++.+|.+.    ++.-|..++-+   .++...+..+++-|...|+.|+..|+...+..+.+.|.
T Consensus       224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            7777777765    44445555544   66666777777777777777777777777666666444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=4.4e-12  Score=95.81  Aligned_cols=227  Identities=11%  Similarity=0.020  Sum_probs=173.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc
Q 020976           49 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI  128 (319)
Q Consensus        49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  128 (319)
                      +.+..+|.+.|-+.+|.+.|+.-...  .|-+.||..|-++|.+..++..|+.++.+-.+. ++.+.....-..+.+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            66778888888888888888877764  567778888888888888888888888877765 244554455566777778


Q ss_pred             CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHH
Q 020976          129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL  208 (319)
Q Consensus       129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  208 (319)
                      ++.++|.++++...+. -+.++.....+...|.-.++++-|+.+|+.+.+.|+. ++..|..+.-+|...++++-+...|
T Consensus       304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence            8888888888887775 2345666666777788888888888888888888877 7778888888888888888888888


Q ss_pred             HHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          209 EYMNKIGFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       209 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      .+....--.|+  ..+|-.+.......|++..|.+.|+-....   +...++.+.-.-.+.|++++|..++......
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            88776533333  356777777778888888888888876655   4567888877778888888888888877654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.53  E-value=7e-10  Score=91.57  Aligned_cols=304  Identities=11%  Similarity=-0.047  Sum_probs=216.3

Q ss_pred             CCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976            4 GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP--ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI   81 (319)
Q Consensus         4 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   81 (319)
                      +|+..+...|-.=...|-..|..-.+..+......-|+.-  --.||..-...|.+.+.++-|..+|....+.- +-+..
T Consensus       473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~s  551 (913)
T KOG0495|consen  473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKS  551 (913)
T ss_pred             cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhH
Confidence            4444555555555555555555555555555555444431  13456666666667777777777777776642 22555


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976           82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC  161 (319)
Q Consensus        82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (319)
                      .|......--..|..++...++++....- +-....|......+-..|+...|..++....+.. +.+...|-+.+....
T Consensus       552 lWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~  629 (913)
T KOG0495|consen  552 LWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEF  629 (913)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhh
Confidence            66666665556677777778888877663 4445555556666777899999999998888863 336777888888888


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 020976          162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN  241 (319)
Q Consensus       162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  241 (319)
                      .+.+++.|..+|.+....  .|+...|..-+..-...+..++|.+++++..+. ++.-...|..+.+.+.+.++++.|.+
T Consensus       630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~  706 (913)
T KOG0495|consen  630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMARE  706 (913)
T ss_pred             ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence            889999999999887764  566667766666666778899999999888875 34445677888888888999999988


Q ss_pred             HHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          242 VFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       242 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      .|..-...   .+..|-.+...--+.|.+-.|..++++.+-.+.. +...|...|+.-.+.|+.+.|..+..+..+
T Consensus       707 aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ  781 (913)
T KOG0495|consen  707 AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ  781 (913)
T ss_pred             HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88765544   5567777777777788899999999998877554 778899999999999999999887766543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.2e-10  Score=94.21  Aligned_cols=286  Identities=13%  Similarity=-0.019  Sum_probs=203.1

Q ss_pred             CCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976            5 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT   84 (319)
Q Consensus         5 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (319)
                      |+.-++.....-.+-+...+++.+..++++.+.+. .++....+..-|..+...|+..+-..+=.++.+.. +-.+.+|-
T Consensus       239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~  316 (611)
T KOG1173|consen  239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF  316 (611)
T ss_pred             hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence            34445556666667777788888888888888775 34566677667777888888877777777777653 33677888


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC
Q 020976           85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG  164 (319)
Q Consensus        85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (319)
                      .+.--|.-.|...+|.+.|.+....+ +.-...|....+.|.-.|..++|...+....+. ++-..-.+--+.--|.+.+
T Consensus       317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~  394 (611)
T KOG1173|consen  317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN  394 (611)
T ss_pred             hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc
Confidence            88777777788888888888877654 223456778888888888888888888777664 1111122233444567788


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc----C--CCCChhhHHHHHHHHHhcCCHHH
Q 020976          165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----G--FDSNLEAYNCIVDRLGKDGKIDH  238 (319)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~  238 (319)
                      +.+.|.+.|.+.....+ .|+...+-+.-.....+.+.+|..+|+.....    +  ......+++.|..+|.+.+.+++
T Consensus       395 n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  395 NLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             cHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            88888888888776532 25666676666666778888888888776622    1  11134567888888888888888


Q ss_pred             HHHHHHhhcc---CCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 020976          239 AINVFESMEV---KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR  297 (319)
Q Consensus       239 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  297 (319)
                      |+..+++...   .+..++.++.-.|...|+++.|.+.|.+.+.  +.|+..+...++..+.
T Consensus       474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence            8888887653   3778888888888888888888888888764  5777766666665443

>PF13041 PPR_2: PPR repeat family

Probab=99.48  E-value=1.5e-13  Score=77.08  Aligned_cols=50  Identities=38%  Similarity=0.744  Sum_probs=40.7

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976           43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR   92 (319)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (319)
                      ||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67788888888888888888888888888888888888888888887753

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=3.5e-10  Score=91.58  Aligned_cols=265  Identities=13%  Similarity=0.014  Sum_probs=214.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976           43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI  122 (319)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  122 (319)
                      -++.....-..-+...+++.+..++++.+.+. .+++...+..-|.++...|+..+-..+=.++.+.- |..+.+|-++.
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg  319 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG  319 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence            35556666677777889999999999999886 35677788888889999999888888878888774 77788999999


Q ss_pred             HHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh
Q 020976          123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK  202 (319)
Q Consensus       123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  202 (319)
                      --|.-.|..++|.+.|.+...... .=...|-.+...|.-.|..++|+..+...-+.= +-....+--+.--|.+.++.+
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence            999999999999999999876522 124568888999999999999999998877641 112223334555678899999


Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC----------CchhHHHHHHHHHccCChhHHHH
Q 020976          203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASK  272 (319)
Q Consensus       203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~  272 (319)
                      .|.++|.+..... |.|+...+.+.-.....+.+.+|..+|+....+          -..+++.|..+|.+.+.+++|+.
T Consensus       398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            9999999988763 567778888877777889999999999876633          22357888999999999999999


Q ss_pred             HHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      .+++.+... +-+..++.++.-.|...|+++.|.+.|.+..
T Consensus       477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            999999874 3488999999999999999999999998754

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.47  E-value=7.7e-11  Score=97.34  Aligned_cols=236  Identities=16%  Similarity=0.134  Sum_probs=176.0

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCcc-cHHHHHHHHHHcCchHHHHHHHHHHHhC-----CC-
Q 020976           80 AITYTTIMKCCFRNRKYKLGLEILSAMKRK-----GY-TFDGF-GYCTVIAAFVKIGRLKEATDYMEQMVTD-----GV-  146 (319)
Q Consensus        80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-  146 (319)
                      ..+...+...|...|+++.|..+++...+.     |. .|... ..+.+...|...+++++|..+|+++...     |- 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            456667889999999999999999887654     21 22222 2334667888899999999999988753     21 


Q ss_pred             -ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---c--CC-CCcH-HhHHHHHHHHhccCChhHHHHHHHHHHhc---C
Q 020976          147 -QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK---Q--GF-ECDK-YTHTILIDGLCKAGNIKGARLHLEYMNKI---G  215 (319)
Q Consensus       147 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~  215 (319)
                       +.-..+++.|..+|.+.|++++|...++...+   .  +. .|.. ..++.+...|+..+++++|..++....+.   -
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence             12245678888899999999999888877643   1  11 2222 24667777888999999999998876543   1


Q ss_pred             CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----------CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          216 FDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       216 ~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      +.++    ..+++.+...|...|++++|.++++++...           ....++.+...|.+.+++++|.++|.+...-
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            1222    367899999999999999999999987643           2456788899999999999999988876532


Q ss_pred             ----CC--ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          281 ----GV--RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       281 ----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                          |.  +-...+|..|...|...|+++.|.++.+.+.+.
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence                22  223478999999999999999999999887654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=7.5e-11  Score=93.83  Aligned_cols=220  Identities=15%  Similarity=0.115  Sum_probs=114.9

Q ss_pred             HhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 020976           20 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG   99 (319)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   99 (319)
                      +.-.|+.-.|..-|+..+.....++ ..|-.+..+|....+.++....|++..+.+.. |+.+|..-.+...-.+++++|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence            3334555666666666655433322 22555555566666666666666666554333 455555555555555666666


Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      ..=|++.+... +-+...|..+.-+..+.+.++++...|++.... +|..+..|+.....+...++++.|.+.|+...+.
T Consensus       414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            66666665543 333444444444445556666666666666555 4445556666666666666666666666665543


Q ss_pred             CCC-----CcH--HhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976          180 GFE-----CDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES  245 (319)
Q Consensus       180 ~~~-----~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  245 (319)
                      ...     .+.  .....++. +.-.+++..|..+++...+.+ +.....+..|...-.+.|+.++|+++|++
T Consensus       492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEk  562 (606)
T KOG0547|consen  492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEK  562 (606)
T ss_pred             ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            111     011  11111111 112255556666666555543 23334555555555566666666666654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=3.3e-10  Score=84.91  Aligned_cols=298  Identities=12%  Similarity=0.062  Sum_probs=191.1

Q ss_pred             CCCCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh
Q 020976            1 MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA   80 (319)
Q Consensus         1 M~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   80 (319)
                      |.-.|+..-..-+.+.+..+.+..++.+|++++..-.++..+ +......+..+|....++..|-..++++...  .|..
T Consensus         1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~   77 (459)
T KOG4340|consen    1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL   77 (459)
T ss_pred             CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH
Confidence            444566665666888999999999999999999988887443 7788889999999999999999999999874  4555


Q ss_pred             hhHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH--HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHH
Q 020976           81 ITYTTI-MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA--AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI  157 (319)
Q Consensus        81 ~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  157 (319)
                      .-|... ...+.+.+.+..|+.+...|.+.   ++...-..-+.  .....+|+..+..++++....|   +..+.+...
T Consensus        78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~g  151 (459)
T KOG4340|consen   78 EQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLG  151 (459)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccch
Confidence            555432 45566778888898888877643   11111111111  2234567777777777665432   333444445


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-------------Chh---
Q 020976          158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-------------NLE---  221 (319)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~---  221 (319)
                      ....+.|+++.|.+-|+...+.+---+...|+..+..| +.++++.|.+...++++.|++.             |..   
T Consensus       152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg  230 (459)
T KOG4340|consen  152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG  230 (459)
T ss_pred             heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence            55567788888888887777654333455666555444 5577777877777777665431             111   


Q ss_pred             ------------hHHHHHHHHHhcCCHHHHHHHHHhhccC-----CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc
Q 020976          222 ------------AYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI  284 (319)
Q Consensus       222 ------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  284 (319)
                                  .++.-...+.+.|+++.|.+.+..|+.+     ||.+...+.-.- ..+++.+..+-++-++..+. -
T Consensus       231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-f  308 (459)
T KOG4340|consen  231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-F  308 (459)
T ss_pred             chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-C
Confidence                        1122222334677888888888777754     666665554322 23445555555555555433 2


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020976          285 LKSAQKAVVDGLRHSGCRREAKKIQS  310 (319)
Q Consensus       285 ~~~~~~~l~~~~~~~g~~~~a~~~~~  310 (319)
                      ...||..++-.||+..-++-|..++.
T Consensus       309 P~ETFANlLllyCKNeyf~lAADvLA  334 (459)
T KOG4340|consen  309 PPETFANLLLLYCKNEYFDLAADVLA  334 (459)
T ss_pred             ChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence            45677777777777777777766653

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=2.6e-09  Score=85.10  Aligned_cols=304  Identities=12%  Similarity=0.087  Sum_probs=214.5

Q ss_pred             CCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CC-CCChhh
Q 020976            5 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS-GH-APNAIT   82 (319)
Q Consensus         5 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~   82 (319)
                      ...|+..+|++.+..-.+.+.++.|..+|++..-  +.|++.+|-.....=.++|+...+.++|+...+. |- ..+...
T Consensus       169 ~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~l  246 (677)
T KOG1915|consen  169 EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEIL  246 (677)
T ss_pred             cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3578899999999999999999999999988765  3588888888888778888888888888776652 10 001122


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHH--------------------------------------------hCCCCCCcccH
Q 020976           83 YTTIMKCCFRNRKYKLGLEILSAMK--------------------------------------------RKGYTFDGFGY  118 (319)
Q Consensus        83 ~~~l~~~~~~~~~~~~a~~~~~~~~--------------------------------------------~~~~~~~~~~~  118 (319)
                      +.+....-.++..++.|.-+|.-..                                            +.+ +.|-.+|
T Consensus       247 fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsW  325 (677)
T KOG1915|consen  247 FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSW  325 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHH
Confidence            2222222222333333333333221                                            111 4455666


Q ss_pred             HHHHHHHHHcCchHHHHHHHHHHHhCCCccChh-------hHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCcHHhH
Q 020976          119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV-------SYNTLINL---YCKEGKLEAAYLLLDEMEKQGFECDKYTH  188 (319)
Q Consensus       119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  188 (319)
                      -..+..-...|+.+...++|++.+.. ++|-..       .|--+=-+   -....+.+.+.++|+..++. ++...+||
T Consensus       326 fdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtF  403 (677)
T KOG1915|consen  326 FDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTF  403 (677)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchH
Confidence            66777777789999999999998876 555321       11111111   23467889999999998874 45566677


Q ss_pred             HHHHHHH----hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHH
Q 020976          189 TILIDGL----CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL  261 (319)
Q Consensus       189 ~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~  261 (319)
                      ..+--.|    .++.+...|.+++...+  |..|...+|...|..-.+.++++.+..++++...-   +-.+|......-
T Consensus       404 aKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE  481 (677)
T KOG1915|consen  404 AKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE  481 (677)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence            6655544    46678899999998776  45788899999999999999999999999998765   555777777777


Q ss_pred             HccCChhHHHHHHHHHHHcCC-ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          262 CKAKRLPSASKLLLSCLKSGV-RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       262 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      ...|+.+.|..+|.-.+.... ......|.+.|+--...|.++.|+.+++++...
T Consensus       482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            788999999999999887632 123456777888778899999999999988654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.44  E-value=6.5e-10  Score=87.85  Aligned_cols=223  Identities=13%  Similarity=-0.056  Sum_probs=143.1

Q ss_pred             CChhHHHHHHHHHhhCC-CCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHH
Q 020976           59 GRLRTARWILKELGDSG-HAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT  135 (319)
Q Consensus        59 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  135 (319)
                      +..+.++.-+.++.... ..|+  ...|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            35566666676666432 1222  3457777777888888888888888888765 556778888888888888888888


Q ss_pred             HHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976          136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG  215 (319)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  215 (319)
                      ..|++..+.. +-+..++..+..++...|++++|.+.++...+..+  +..........+...++.++|...+.......
T Consensus       119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            8888888753 23456777788888888888888888888887543  32211222222345677888888886655432


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHH--HHHHHHhhccC-------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCH
Q 020976          216 FDSNLEAYNCIVDRLGKDGKIDH--AINVFESMEVK-------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK  286 (319)
Q Consensus       216 ~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  286 (319)
                       +|+... ..+...  ..|+...  +.+.+......       ....|..+...+...|++++|...|++....++ ||.
T Consensus       196 -~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~  270 (296)
T PRK11189        196 -DKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNF  270 (296)
T ss_pred             -CccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chH
Confidence             232222 222222  3344332  33223221111       345788888889999999999999999887643 344


Q ss_pred             HHHH
Q 020976          287 SAQK  290 (319)
Q Consensus       287 ~~~~  290 (319)
                      .-+.
T Consensus       271 ~e~~  274 (296)
T PRK11189        271 VEHR  274 (296)
T ss_pred             HHHH
Confidence            4343

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.43  E-value=1e-10  Score=96.60  Aligned_cols=233  Identities=18%  Similarity=0.118  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC-CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--C
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDS-----GH-APNAI-TYTTIMKCCFRNRKYKLGLEILSAMKRK-----G--Y  111 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~  111 (319)
                      .+...+...|...|+++.|..+++...+.     |. .|... ..+.+...|...+++++|..+|+++...     |  .
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34444666666666666666666655442     11 12222 2233555566666666666666665432     1  1


Q ss_pred             CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-----CC-ccCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC
Q 020976          112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-----GV-QLDI-VSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GF  181 (319)
Q Consensus       112 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~  181 (319)
                      +.-..+++.|...|.+.|++++|..++++..+.     |. .|.+ ..++.+...+...+++++|..+++...+.   -+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            122334555555666666666666655554331     11 1121 23455555666666677766666654321   11


Q ss_pred             CCc----HHhHHHHHHHHhccCChhHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc--
Q 020976          182 ECD----KYTHTILIDGLCKAGNIKGARLHLEYMNKIG-------FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--  248 (319)
Q Consensus       182 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--  248 (319)
                      .++    ..++..+...|...|++++|.++++.++...       ..-....++.+...|.+.+++.+|.++|.+...  
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            222    2356666777777777777777766665431       111134455666666666666666666654331  


Q ss_pred             ----C----CchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976          249 ----K----DSFTYSSMVHNLCKAKRLPSASKLLLSCL  278 (319)
Q Consensus       249 ----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  278 (319)
                          +    ...+|..|...|...|+++.|.++.....
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                1    23456677777777777777777766654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.42  E-value=8.3e-10  Score=87.26  Aligned_cols=218  Identities=13%  Similarity=-0.043  Sum_probs=157.6

Q ss_pred             CChhHHHHHHHHHHhCC-CCCC--cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHH
Q 020976           94 RKYKLGLEILSAMKRKG-YTFD--GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY  170 (319)
Q Consensus        94 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  170 (319)
                      +..+.++..+.++.... ..|+  ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            45677777777777542 1221  3457777888999999999999999999863 446788999999999999999999


Q ss_pred             HHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-
Q 020976          171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-  249 (319)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-  249 (319)
                      ..|+...+..+. +..++..+..++...|++++|...++...+.+  |+..........+...+++++|.+.|.+.... 
T Consensus       119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            999999986444 45677888888899999999999999998864  44332222222345678899999999764433 


Q ss_pred             CchhHHHHHHHHHccCChhHHHHHHHHHHHc---CC--cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976          250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS---GV--RI-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI  317 (319)
Q Consensus       250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i  317 (319)
                      ++..|.. .......|+...+ ..+..+.+.   .+  .| ....|..+...+.+.|++++|...|++..+.++
T Consensus       196 ~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        196 DKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             CccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            4444432 2333445666554 345544422   11  11 335788999999999999999999999887765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.40  E-value=2.4e-09  Score=77.38  Aligned_cols=197  Identities=12%  Similarity=0.023  Sum_probs=110.9

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR   92 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (319)
                      ..-|.-.|.+.|+...|..-+++.+++.+. +..+|..+...|.+.|+.+.|.+-|++.....+. +....|.....++.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence            334445566666666666666666655332 4555666666666666666666666666554322 45556666666666


Q ss_pred             cCChhHHHHHHHHHHhCC-CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH
Q 020976           93 NRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL  171 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  171 (319)
                      .|.+++|...|++..... +..-..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence            666666666666655432 12223455555556666666666666666665542 2233444555555666666666666


Q ss_pred             HHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976          172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK  213 (319)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  213 (319)
                      .++.....+. ++..+....|+.--..|+.+.+.+.=..+..
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            6666555544 4555555555555566666555554444443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.40  E-value=9.3e-10  Score=79.44  Aligned_cols=191  Identities=13%  Similarity=0.052  Sum_probs=110.5

Q ss_pred             HHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976          120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG  199 (319)
Q Consensus       120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  199 (319)
                      .|.-.|...|+...|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++.....+. +....|.....+|..|
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg  117 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence            34445666666666666666666542 234455556666666666666666666666554333 4445555555566666


Q ss_pred             ChhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHH
Q 020976          200 NIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL  275 (319)
Q Consensus       200 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~  275 (319)
                      .+++|...|+.....- ..--..+|..+.-+..+.|+.+.|...|++....   .+.+...+.......|++-.|...++
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            6666666666655541 1112345555666666666666666666655443   34455556666666666666666666


Q ss_pred             HHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      .....+. ++.......|+.-.+.|+.+.+-++=.++.
T Consensus       198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~  234 (250)
T COG3063         198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ  234 (250)
T ss_pred             HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            6655444 566666666666666666666665554444

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=8.5e-09  Score=80.84  Aligned_cols=305  Identities=10%  Similarity=-0.030  Sum_probs=208.1

Q ss_pred             CCCcchHhHHHHHHHHhhc--CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976            5 DLTPCTATFNIMLNGLCKN--RYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI   81 (319)
Q Consensus         5 g~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   81 (319)
                      .++|.-.+....+.++++.  ++...|...+-.+... -++-|+.....+...+...|+.++|...|++....++. +..
T Consensus       189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~  267 (564)
T KOG1174|consen  189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVE  267 (564)
T ss_pred             ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhh
Confidence            3445555555555555543  4445555555444332 24557888899999999999999999999998764321 333


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976           82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC  161 (319)
Q Consensus        82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (319)
                      ......-.+.+.|+.+....+...+.... .-+...|-.-+.......+++.|+.+-++.+..+ +-+...+-.-...+.
T Consensus       268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~  345 (564)
T KOG1174|consen  268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLI  345 (564)
T ss_pred             hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHH
Confidence            34444445667788888888877776543 2333444444455556678888888888887753 234555666667788


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHH-HHHHh-cCCHHHH
Q 020976          162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV-DRLGK-DGKIDHA  239 (319)
Q Consensus       162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a  239 (319)
                      ..+++++|.-.|+..+...+ .+...|.-++.+|.-.|.+.+|...-+...+. ++.+..+...+. ..+.- ..--++|
T Consensus       346 ~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA  423 (564)
T KOG1174|consen  346 ALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA  423 (564)
T ss_pred             hccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence            88999999999988876532 36778999999999999999888777666554 234555555442 22222 2235778


Q ss_pred             HHHHHhhccCCc---hhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          240 INVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       240 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      ..+++.....+|   ...+.+...+...|+.+.++.++++.+.  ..||....+.+.+.+...+.+++|.+.|....+.+
T Consensus       424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  424 KKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            888887665543   3455666777888999999999988776  36788888999999999999999988887765443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.38  E-value=7.8e-11  Score=100.02  Aligned_cols=254  Identities=13%  Similarity=0.110  Sum_probs=171.3

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 020976           31 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG  110 (319)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  110 (319)
                      .++-.+...|+.|+-.||..+|.-||..|+.+.|- +|.-|.....+.+...++.++.+....++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            34566777888888888888888888888888888 8888877777777888888888888877776665          


Q ss_pred             CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCcHHhHH
Q 020976          111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME-KQGFECDKYTHT  189 (319)
Q Consensus       111 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~  189 (319)
                       .|.+.+|..|+.+|...||...    |+...+        ....+...+...|--..-..++..+. ..+.-||..   
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---  143 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---  143 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence             6677888888888888888765    222222        11223333444444444444443322 122333433   


Q ss_pred             HHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHhhcc-CCchhHHHHHHHHHccCCh
Q 020976          190 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK-DGKIDHAINVFESMEV-KDSFTYSSMVHNLCKAKRL  267 (319)
Q Consensus       190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~  267 (319)
                      ..+......|-++.+.+++..+.......   .+..+++-+.. ...+++-..+...... +++.+|...+.+-...|+.
T Consensus       144 n~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~  220 (1088)
T KOG4318|consen  144 NAILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDV  220 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCch
Confidence            23333344556666666654443221111   11112332222 2335555555555555 6999999999999999999


Q ss_pred             hHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976          268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI  317 (319)
Q Consensus       268 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i  317 (319)
                      +.|..++.+|.+.|.+.+..-|..++-+   .++...+..+++.|++.|+
T Consensus       221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv  267 (1088)
T KOG4318|consen  221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGV  267 (1088)
T ss_pred             hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcC
Confidence            9999999999999999999888888766   8889999999999999886

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.37  E-value=8.3e-09  Score=86.47  Aligned_cols=263  Identities=16%  Similarity=0.080  Sum_probs=184.6

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCChhhH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA-----GRLRTARWILKELGDSGHAPNAITY   83 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~   83 (319)
                      ...........+.+.|+.++|..+|..+.++++. |..-|..+..+..-.     .+.+...++|+++...-  |...+.
T Consensus        37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~  113 (517)
T PF12569_consen   37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAP  113 (517)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccch
Confidence            3445677888999999999999999999998643 555555555555222     35778888999887753  444443


Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC----C----------Ccc
Q 020976           84 TTIMKCCFRNRKYK-LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----G----------VQL  148 (319)
Q Consensus        84 ~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~  148 (319)
                      ..+.-.+.....+. .+..++..+...|+|   .+|+.+-..|.......-...++......    +          -+|
T Consensus       114 ~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p  190 (517)
T PF12569_consen  114 RRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPP  190 (517)
T ss_pred             hHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCc
Confidence            33332233222333 355566777778854   35677777776555555556666655432    1          123


Q ss_pred             Ch--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 020976          149 DI--VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI  226 (319)
Q Consensus       149 ~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  226 (319)
                      +.  .++..+...|...|++++|++++++.++..+. .+..|..-.+.+-..|++.+|...++...+.+ .-|...-+..
T Consensus       191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~  268 (517)
T PF12569_consen  191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKC  268 (517)
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHH
Confidence            33  35567788899999999999999999987433 36688888999999999999999999999875 4566666677


Q ss_pred             HHHHHhcCCHHHHHHHHHhhccCCc------------hhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976          227 VDRLGKDGKIDHAINVFESMEVKDS------------FTYSSMVHNLCKAKRLPSASKLLLSCLK  279 (319)
Q Consensus       227 ~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~  279 (319)
                      +..+.+.|++++|.+++......+.            .-......+|.+.|++..|++.|....+
T Consensus       269 aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  269 AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            7888999999999999988876631            1123446788899999998887766544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.37  E-value=2.3e-08  Score=81.83  Aligned_cols=301  Identities=11%  Similarity=-0.036  Sum_probs=187.5

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-VPEL-VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      ...|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+++++..+..+ .+...+.. .
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~   83 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-H   83 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-h
Confidence            44567777778888888888777777655322 1222 2222334456678999999999999887632 24444442 2


Q ss_pred             HHHHh----cCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 020976           88 KCCFR----NRKYKLGLEILSAMKRKGYTFD-GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK  162 (319)
Q Consensus        88 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (319)
                      ..+..    .+..+.+.+.+...  ....|+ ......+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~  160 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM  160 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence            22222    34455555555441  111222 2333455567889999999999999999874 4456778889999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCC-CcH--HhHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCChhhH-H--HHHHHHHhcCC
Q 020976          163 EGKLEAAYLLLDEMEKQGFE-CDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DSNLEAY-N--CIVDRLGKDGK  235 (319)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~  235 (319)
                      .|++++|...+++....... |+.  ..|..+...+...|++++|..+++....... .+..... +  .++..+...|.
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  240 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH  240 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence            99999999999998875332 222  3455788889999999999999999864421 1111111 1  22333344443


Q ss_pred             HHHHHHH---HHhhcc--C-CchhH--HHHHHHHHccCChhHHHHHHHHHHHcCCc------c--CHHHHHHHHHHHHhc
Q 020976          236 IDHAINV---FESMEV--K-DSFTY--SSMVHNLCKAKRLPSASKLLLSCLKSGVR------I--LKSAQKAVVDGLRHS  299 (319)
Q Consensus       236 ~~~a~~~---~~~~~~--~-~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~  299 (319)
                      ...+.++   ......  + ....+  .....++...|+.+.|..++..+......      .  ..........++...
T Consensus       241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~  320 (355)
T cd05804         241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE  320 (355)
T ss_pred             CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence            3322222   111111  1 11222  25667778899999999999988764222      0  122223333456789


Q ss_pred             CCHHHHHHHHHHHHhh
Q 020976          300 GCRREAKKIQSKIRMA  315 (319)
Q Consensus       300 g~~~~a~~~~~~~~~~  315 (319)
                      |++++|.+.+......
T Consensus       321 g~~~~A~~~L~~al~~  336 (355)
T cd05804         321 GNYATALELLGPVRDD  336 (355)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999998876543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=3.5e-09  Score=82.93  Aligned_cols=277  Identities=13%  Similarity=0.050  Sum_probs=205.6

Q ss_pred             CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976            6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT   85 (319)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   85 (319)
                      ++-|+.....+...+...|+.++|+..|+..+..++- +..........+...|+.+....+...+.... .-+...|..
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV  305 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV  305 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence            5567888899999999999999999999998765321 23333333344567889999888888887642 224555555


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976           86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK  165 (319)
Q Consensus        86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (319)
                      -........+++.|+.+-++.++.. +.+...+..-...+...+++++|.-.|+..... -|.+...|.-++.+|...|+
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhch
Confidence            5555667788999999999888764 445555555556788899999999999998875 24578899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHhHHHHH-HHHh-ccCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 020976          166 LEAAYLLLDEMEKQGFECDKYTHTILI-DGLC-KAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINV  242 (319)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~  242 (319)
                      +.+|.-+-+...+. +.-+..+...+. ..|. ...--++|.++++.-.+.  .|+ ....+.+...+...|..+.+..+
T Consensus       384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L  460 (564)
T KOG1174|consen  384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL  460 (564)
T ss_pred             HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence            99998877766543 233555555542 3332 223457899999887765  344 45667788888999999999999


Q ss_pred             HHhhccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHH
Q 020976          243 FESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK  290 (319)
Q Consensus       243 ~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  290 (319)
                      +++....  |....+.+...+...+.+++|.+.|...+..+++ |..+..
T Consensus       461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl~  509 (564)
T KOG1174|consen  461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTLR  509 (564)
T ss_pred             HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHHH
Confidence            9987644  8888999999999999999999999998876432 444443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.34  E-value=6.5e-11  Score=92.22  Aligned_cols=248  Identities=13%  Similarity=0.069  Sum_probs=156.2

Q ss_pred             HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976           18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK   97 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   97 (319)
                      +.+.-.|++..++.-.+ ........+......+.+++...|+++.+.   .++.... .|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            45566788888886666 333222234455666778888888876543   4444433 667666666655444334444


Q ss_pred             HHHHHHHHHHhCCCC-CCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976           98 LGLEILSAMKRKGYT-FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM  176 (319)
Q Consensus        98 ~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  176 (319)
                      .++.-++........ .++.........+...|++++|++++...      .+.......+.++.+.++++.|.+.++.|
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            555444444333222 12222222334456678999998887643      35666777888999999999999999999


Q ss_pred             HHcCCCCcHHhHHHHHHHHh----ccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---
Q 020976          177 EKQGFECDKYTHTILIDGLC----KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---  249 (319)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  249 (319)
                      .+.  . +..+...+..++.    ..+.+.+|..+|+++.+. .++++.+.+.+..+....|++++|.+++.+....   
T Consensus       158 ~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  158 QQI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             HCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             Hhc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence            865  3 3334444555443    234688999999998664 4678888888888889999999999998887655   


Q ss_pred             CchhHHHHHHHHHccCCh-hHHHHHHHHHHHc
Q 020976          250 DSFTYSSMVHNLCKAKRL-PSASKLLLSCLKS  280 (319)
Q Consensus       250 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~  280 (319)
                      ++.+...++.+....|+. +.+.+.+.++...
T Consensus       234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            556666677777777777 5566777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=7.9e-08  Score=76.92  Aligned_cols=253  Identities=13%  Similarity=0.064  Sum_probs=137.2

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHH
Q 020976           57 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD  136 (319)
Q Consensus        57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  136 (319)
                      ..|++..|.++|+...+  ..|+..+|.+.++.-.+.+.++.|..+|++..-.  .|+..+|.-....=.+.|+...+..
T Consensus       153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~  228 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS  228 (677)
T ss_pred             HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence            34555666666665554  3677777777777777777777777777776644  4677677666666667777777777


Q ss_pred             HHHHHHhC-CC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------------
Q 020976          137 YMEQMVTD-GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-----------------------------------  179 (319)
Q Consensus       137 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------------------------------  179 (319)
                      +|+...+. |- ..+...|.+....-.++..++.|.-+|+-.+..                                   
T Consensus       229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk  308 (677)
T KOG1915|consen  229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK  308 (677)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence            77766553 10 111222333222222233333333333222111                                   


Q ss_pred             --------CCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh--hh-----HHHHHHHH---HhcCCHHHHHH
Q 020976          180 --------GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL--EA-----YNCIVDRL---GKDGKIDHAIN  241 (319)
Q Consensus       180 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~-----~~~l~~~~---~~~~~~~~a~~  241 (319)
                              .-+.|..+|.-.++.-...|+.+...++|++.+.. ++|-.  ..     |..+=.++   ....+++.+.+
T Consensus       309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~  387 (677)
T KOG1915|consen  309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ  387 (677)
T ss_pred             hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence                    01224455556666666667777777777777654 34421  11     11111111   23556666666


Q ss_pred             HHHhhccC---CchhHH----HHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          242 VFESMEVK---DSFTYS----SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       242 ~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      +++...+.   ...+|.    .......++.+...|.+++...+  |.-|-..+|...|..-.+.+++|..++++++..+
T Consensus       388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle  465 (677)
T KOG1915|consen  388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE  465 (677)
T ss_pred             HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            66554432   222222    22333345556666666666554  4456666676666666667777777777666554


Q ss_pred             hh
Q 020976          315 AK  316 (319)
Q Consensus       315 ~~  316 (319)
                      .+
T Consensus       466 ~~  467 (677)
T KOG1915|consen  466 FS  467 (677)
T ss_pred             cC
Confidence            43

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.26  E-value=7.2e-08  Score=78.95  Aligned_cols=259  Identities=14%  Similarity=0.046  Sum_probs=163.8

Q ss_pred             HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHH
Q 020976           17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPN-AITYTTIMKCCF   91 (319)
Q Consensus        17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~   91 (319)
                      ...+...|++++|.+.+++..+..+ .+...+.. ...+..    .+..+.+.+.+...  ....|+ ......+...+.
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~  125 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLE  125 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHH
Confidence            4456778999999999999887633 24444442 222222    44555555555541  112233 344455667888


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCC-ccCh--hhHHHHHHHHHhcCCHHH
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-QLDI--VSYNTLINLYCKEGKLEA  168 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~  168 (319)
                      ..|++++|...+++..+.. +.+...+..+...+...|++++|..++++...... .|+.  ..|..+...+...|++++
T Consensus       126 ~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         126 EAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence            9999999999999999875 55677788888999999999999999999887522 1222  345578889999999999


Q ss_pred             HHHHHHHHHHcCC-CCcHHhH-H--HHHHHHhccCChhHHHHH--HHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHH
Q 020976          169 AYLLLDEMEKQGF-ECDKYTH-T--ILIDGLCKAGNIKGARLH--LEYMNKIGFDS--NLEAYNCIVDRLGKDGKIDHAI  240 (319)
Q Consensus       169 a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~  240 (319)
                      |..++++...... .+..... .  .++.-+...|....+..+  +........+.  ..........++...|+.+.|.
T Consensus       205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~  284 (355)
T cd05804         205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD  284 (355)
T ss_pred             HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence            9999999864432 1112111 1  223333444543333333  11111111111  1122235666778899999999


Q ss_pred             HHHHhhccC--C----------chhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          241 NVFESMEVK--D----------SFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       241 ~~~~~~~~~--~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      .+++.+...  .          ....-.....+...|+.++|.+.+...+..
T Consensus       285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999877542  1          112222233455789999999999887654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.21  E-value=1.5e-09  Score=84.77  Aligned_cols=252  Identities=13%  Similarity=0.086  Sum_probs=159.4

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchH
Q 020976           53 KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK  132 (319)
Q Consensus        53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  132 (319)
                      +-+.-.|++..++.-.+ ........+......+.+++...|+++.++   .++.... .|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            34456788888876555 332222223445566778888888876543   4444333 555555544444443334445


Q ss_pred             HHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHH
Q 020976          133 EATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM  211 (319)
Q Consensus       133 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  211 (319)
                      .++.-+++.......+ +..........+...|++++|++++...      .+.......+..+.+.++++.|.+.++.|
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5555554444332222 2223333335566678899888887643      25566677788888899999999999988


Q ss_pred             HhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc
Q 020976          212 NKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI  284 (319)
Q Consensus       212 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  284 (319)
                      .+.+   +..+...+..++..    .+.+.+|.-+|+++...   ++.+.+.+..++...|++++|.+++.+....+.. 
T Consensus       158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-  233 (290)
T PF04733_consen  158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-  233 (290)
T ss_dssp             HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred             HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence            8643   33455556665543    33588899999988765   6677788888888899999999999888765433 


Q ss_pred             CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhhccC
Q 020976          285 LKSAQKAVVDGLRHSGCR-REAKKIQSKIRMAKISH  319 (319)
Q Consensus       285 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~i~h  319 (319)
                      ++.+...++.+....|+. +.+.+++.+++.....|
T Consensus       234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            667777788888888887 67788888888877766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN02789 farnesyltranstransferase

Probab=99.18  E-value=1.2e-07  Score=75.07  Aligned_cols=215  Identities=8%  Similarity=0.014  Sum_probs=143.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCC   90 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (319)
                      ++..+-..+...++.++|+.+.+++++.+.. +..+|+....++...| ++++++..++++.....+ +..+|+.....+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l  116 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence            4555666677778889999999988876433 4556666666666666 578889988888876544 566677665555


Q ss_pred             HhcCCh--hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc---CC
Q 020976           91 FRNRKY--KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE---GK  165 (319)
Q Consensus        91 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~  165 (319)
                      .+.+..  ++++.+++++.+.. +-+..+|.....++.+.|+++++++.++++++.+. -+..+|+.....+.+.   |.
T Consensus       117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~  194 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGG  194 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccc
Confidence            566653  66788888887765 55777888888888888888889998888888653 3566666665555443   22


Q ss_pred             H----HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc----CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 020976          166 L----EAAYLLLDEMEKQGFECDKYTHTILIDGLCKA----GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK  232 (319)
Q Consensus       166 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  232 (319)
                      .    ++.++...+.+...+. +...|+.+...+...    +...++...+.+..+.+ +.+...+..+++.|+.
T Consensus       195 ~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        195 LEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             ccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence            2    4566666666665443 556666666666552    33455666666665543 3455666667777664

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.18  E-value=7e-07  Score=74.26  Aligned_cols=296  Identities=10%  Similarity=0.076  Sum_probs=194.3

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------C------ChhHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA----------------G------RLRTARWILK   69 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~   69 (319)
                      .|++|.+.|.+.|.+++|.++|++..+.  ..++.-|..+.++|+.-                +      +++-....|+
T Consensus       250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e  327 (835)
T KOG2047|consen  250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE  327 (835)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence            4889999999999999999999997764  22444555555555432                1      1233344444


Q ss_pred             HHhhCCC-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------cccHHHHHHHHHHcCchH
Q 020976           70 ELGDSGH-----------APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD------GFGYCTVIAAFVKIGRLK  132 (319)
Q Consensus        70 ~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~  132 (319)
                      .+...+.           +-++..|..-...  ..|+..+....|.+..+. +.|.      ...|..+...|-..|+++
T Consensus       328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~  404 (835)
T KOG2047|consen  328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD  404 (835)
T ss_pred             HHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence            4443211           1234444444333  345666777777777654 2222      245788889999999999


Q ss_pred             HHHHHHHHHHhCCCccC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------CC-------cHHhHHHHH
Q 020976          133 EATDYMEQMVTDGVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF----------EC-------DKYTHTILI  192 (319)
Q Consensus       133 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~-------~~~~~~~l~  192 (319)
                      .|..+|++...-..+--   ..+|......=.+..+++.|+++++......-          .|       +...|...+
T Consensus       405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~  484 (835)
T KOG2047|consen  405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA  484 (835)
T ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence            99999999987643322   23455555666677889999998887653211          11       234566666


Q ss_pred             HHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----CchhHHHHHHHHHc---c
Q 020976          193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCK---A  264 (319)
Q Consensus       193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~---~  264 (319)
                      ..--..|-++....+++++.+..+ .++.........+..+.-++++.+++++-...     -...|+..+..+.+   .
T Consensus       485 DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg  563 (835)
T KOG2047|consen  485 DLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG  563 (835)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence            666677899999999999998764 34444444455556677799999999986543     33567777766654   3


Q ss_pred             CChhHHHHHHHHHHHcCCccCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          265 KRLPSASKLLLSCLKSGVRILKSA--QKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       265 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      ...+.|..+|+++++ |++|...-  |......--+.|-...|..++++...
T Consensus       564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            467999999999999 67775432  22222333457888999999988643

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.17  E-value=7e-07  Score=74.21  Aligned_cols=109  Identities=13%  Similarity=0.045  Sum_probs=67.3

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +..+|..+.-.+....++++|++.|......+.. |...|.-+.-.-++.|+++.....-..+.+..+ -....|..+..
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Av  151 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAV  151 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHH
Confidence            3455666666666667777777777777665433 566666666566666666666666555555321 24455666666


Q ss_pred             HHHhcCChhHHHHHHHHHHhCC-CCCCcccHH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKG-YTFDGFGYC  119 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~  119 (319)
                      ++.-.|+...|..++++..+.. ..|+...+.
T Consensus       152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e  183 (700)
T KOG1156|consen  152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYE  183 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence            6777777777777777776553 234444443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.14  E-value=1e-06  Score=67.95  Aligned_cols=295  Identities=9%  Similarity=0.010  Sum_probs=192.1

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH-HHHHHHHH
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY-TTIMKCCF   91 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~   91 (319)
                      .--+-..+...|++.+|+.-|....+.++. +-.++-.-...|...|+-.-|+.-+....+.  +||-..- ..-...+.
T Consensus        41 hlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll  117 (504)
T KOG0624|consen   41 HLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL  117 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence            334555666677888888888777764221 2233333445677778878888777777763  5553221 12234567


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcc----c------------HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDGF----G------------YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT  155 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~----~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  155 (319)
                      +.|.++.|..-|+.+.+..  |+..    .            ....+..+.-.|+...|+.....+.+. .+-+...|..
T Consensus       118 K~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~  194 (504)
T KOG0624|consen  118 KQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQA  194 (504)
T ss_pred             hcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHH
Confidence            8888999988888888763  2211    1            112233455678888888888888876 3457777888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH-------HHH-
Q 020976          156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN-------CIV-  227 (319)
Q Consensus       156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~-  227 (319)
                      -..+|...|++..|+.=++...+..-. +..++..+-..+...|+.+.++...++..+.  .|+....-       .+. 
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K  271 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVK  271 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHH
Confidence            888888889888888777776655433 4455556667777888888888888777764  35532211       111 


Q ss_pred             -----HHHHhcCCHHHHHHHHHhhccCCc-------hhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc-CHHHHHHHHH
Q 020976          228 -----DRLGKDGKIDHAINVFESMEVKDS-------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI-LKSAQKAVVD  294 (319)
Q Consensus       228 -----~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~  294 (319)
                           ......+++.++.+-.+...+.++       ..+..+-.++...+++.+|+....+.++.  .| |..++..-..
T Consensus       272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAe  349 (504)
T KOG0624|consen  272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAE  349 (504)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHH
Confidence                 122345666666666665554422       23445556677788888888888888764  44 4677777788


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhhcc
Q 020976          295 GLRHSGCRREAKKIQSKIRMAKIS  318 (319)
Q Consensus       295 ~~~~~g~~~~a~~~~~~~~~~~i~  318 (319)
                      +|.-..++|.|+.-|++..+-+-+
T Consensus       350 A~l~dE~YD~AI~dye~A~e~n~s  373 (504)
T KOG0624|consen  350 AYLGDEMYDDAIHDYEKALELNES  373 (504)
T ss_pred             HHhhhHHHHHHHHHHHHHHhcCcc
Confidence            888888888888888887766544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.11  E-value=1.8e-06  Score=73.20  Aligned_cols=305  Identities=16%  Similarity=0.109  Sum_probs=184.6

Q ss_pred             CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHH
Q 020976            6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITYT   84 (319)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~   84 (319)
                      +.-+...|..+.-++...|+++.+.+.|++....-+. ....|+.+...|...|.-..|..++++.......|+ +..+-
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            4457788888888999999999999999887653222 455666666666666666666666665544322222 22222


Q ss_pred             HHHHHHHh-cCChhHHHHHHHH--------------------------------------------------HHhCCCCC
Q 020976           85 TIMKCCFR-NRKYKLGLEILSA--------------------------------------------------MKRKGYTF  113 (319)
Q Consensus        85 ~l~~~~~~-~~~~~~a~~~~~~--------------------------------------------------~~~~~~~~  113 (319)
                      ..-+.|.+ .+..++++.+..+                                                  ..+.+ +.
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~  476 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT  476 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence            22222221 2333333333333                                                  32222 22


Q ss_pred             CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-----------
Q 020976          114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GF-----------  181 (319)
Q Consensus       114 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-----------  181 (319)
                      |+...-.+.--|+..++.+.|....++..+.+...+...|..+.-.+...+++.+|+.+.+..... |.           
T Consensus       477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i  556 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI  556 (799)
T ss_pred             CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence            222222233345555677777777777776644556666666666666666666666665433211 00           


Q ss_pred             --------------------------------------------------------------------------------
Q 020976          182 --------------------------------------------------------------------------------  181 (319)
Q Consensus       182 --------------------------------------------------------------------------------  181 (319)
                                                                                                      
T Consensus       557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s  636 (799)
T KOG4162|consen  557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS  636 (799)
T ss_pred             hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence                                                                                            


Q ss_pred             ----CCc------HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--
Q 020976          182 ----ECD------KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--  249 (319)
Q Consensus       182 ----~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--  249 (319)
                          .|+      ...|......+.+.+..+++...+.+..+.. +.....|......+...|..++|.+.|......  
T Consensus       637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP  715 (799)
T KOG4162|consen  637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP  715 (799)
T ss_pred             cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence                000      0012223333344444455554544444432 334445555556667788888888888876543  


Q ss_pred             -CchhHHHHHHHHHccCChhHHHH--HHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          250 -DSFTYSSMVHNLCKAKRLPSASK--LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       250 -~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                       ++.+..++...+.+.|+..-|..  ++..+++.+.. +...|..+...+.+.|+.++|.+.|.-.-+
T Consensus       716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence             56678889999999998887777  99999987543 889999999999999999999999876543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.09  E-value=7.5e-08  Score=80.85  Aligned_cols=220  Identities=15%  Similarity=0.079  Sum_probs=176.1

Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHH
Q 020976           77 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL  156 (319)
Q Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  156 (319)
                      +|-...-..+...+...|-...|..+++++.         .|.-++.+|...|+..+|..+..+..+.  +|+...|..+
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L  463 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL  463 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence            3333444556677788899999999998764         4667788999999999999998888873  6888889888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 020976          157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI  236 (319)
Q Consensus       157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  236 (319)
                      ........-+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.+ +....+|-....+..+.+++
T Consensus       464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~  535 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE  535 (777)
T ss_pred             hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence            88888888889999988876432       22233333345789999999999888765 56678888888999999999


Q ss_pred             HHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          237 DHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       237 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      +.|.+.|......   +...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+-...+.|.+++|.+.+.++.
T Consensus       536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll  614 (777)
T KOG1128|consen  536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL  614 (777)
T ss_pred             HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence            9999999876643   67899999999999999999999999999887 4466778778888889999999999998886


Q ss_pred             hhh
Q 020976          314 MAK  316 (319)
Q Consensus       314 ~~~  316 (319)
                      ...
T Consensus       615 ~~~  617 (777)
T KOG1128|consen  615 DLR  617 (777)
T ss_pred             Hhh
Confidence            543

>PF12854 PPR_1: PPR repeat

Probab=99.07  E-value=2e-10  Score=57.84  Aligned_cols=33  Identities=27%  Similarity=0.614  Sum_probs=24.4

Q ss_pred             CCCCcchHhHHHHHHHHhhcCChHHHHHHHHHH
Q 020976            4 GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL   36 (319)
Q Consensus         4 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~   36 (319)
                      .|+.||..+||.+|.+|++.|++++|.++|++|
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            367777777777777777777777777777766

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.07  E-value=3.5e-07  Score=82.18  Aligned_cols=242  Identities=14%  Similarity=0.073  Sum_probs=186.3

Q ss_pred             hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC---CCcccHHHHHHHHHHcCchHHHHH
Q 020976           61 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYT---FDGFGYCTVIAAFVKIGRLKEATD  136 (319)
Q Consensus        61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~ll~~~~~~~~~~~a~~  136 (319)
                      ++.|.++-..++.+  +-+...|...|......++.++|.++.++.... ++.   --...|.++++.-..-|.-+...+
T Consensus      1441 pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred             CcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence            33444444444432  224677889999999999999999999988754 111   123457778887777888889999


Q ss_pred             HHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCC
Q 020976          137 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF  216 (319)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  216 (319)
                      +|+++.+.  -.....|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+.++.- 
T Consensus      1519 VFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l- 1594 (1710)
T KOG1070|consen 1519 VFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL- 1594 (1710)
T ss_pred             HHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-
Confidence            99999885  224567889999999999999999999999875 23467789999999999999999999999988752 


Q ss_pred             CC--ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCH--HHH
Q 020976          217 DS--NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK--SAQ  289 (319)
Q Consensus       217 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~  289 (319)
                      +.  ........+..-.+.|+.+.++.+|+.....   ....|+.++..-.+.|+.+.+..+|++....++.|-.  ..|
T Consensus      1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred             chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence            22  3345555666677899999999999987654   5679999999999999999999999999999887743  466


Q ss_pred             HHHHHHHHhcCCHHHHHHH
Q 020976          290 KAVVDGLRHSGCRREAKKI  308 (319)
Q Consensus       290 ~~l~~~~~~~g~~~~a~~~  308 (319)
                      ...+..-...|+-..+..+
T Consensus      1675 KkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred             HHHHHHHHhcCchhhHHHH
Confidence            6677666667775544433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=7.7e-08  Score=78.65  Aligned_cols=246  Identities=12%  Similarity=0.065  Sum_probs=171.3

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976           54 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE  133 (319)
Q Consensus        54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  133 (319)
                      -+.+.|++.+|.-.|+......+. +...|..|.......++-..|+..+.+..+.. +-+....-.|.-.|...|.-..
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence            345778888888888888776544 78888888888888888888888888888775 5566677777778888888888


Q ss_pred             HHHHHHHHHhCCCccChhhHHHHH-----------HHHHhcCCHHHHHHHHHHHHH-cCCCCcHHhHHHHHHHHhccCCh
Q 020976          134 ATDYMEQMVTDGVQLDIVSYNTLI-----------NLYCKEGKLEAAYLLLDEMEK-QGFECDKYTHTILIDGLCKAGNI  201 (319)
Q Consensus       134 a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~  201 (319)
                      |++.++.-+....+     |..+.           ..+.....+....++|-++.. .+..+|+.....|.-.|.-.|++
T Consensus       372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef  446 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF  446 (579)
T ss_pred             HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence            88888877654211     00000           111112223444555555543 34346777778888888888899


Q ss_pred             hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976          202 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL  278 (319)
Q Consensus       202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  278 (319)
                      ++|...|+..+... |-|..+|+.|...++...+.++|+..|.+....   =+.+...|.-.|...|.+++|.+.|-..+
T Consensus       447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            99999999888764 556688888888888888899999999887754   33456667777888899998888877655


Q ss_pred             Hc---------CCccCHHHHHHHHHHHHhcCCHHHHHH
Q 020976          279 KS---------GVRILKSAQKAVVDGLRHSGCRREAKK  307 (319)
Q Consensus       279 ~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~  307 (319)
                      ..         +..++...|..|=.++.-.++.|-+.+
T Consensus       526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            42         112234566666666666666664433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.05  E-value=2.1e-06  Score=71.46  Aligned_cols=132  Identities=13%  Similarity=0.037  Sum_probs=93.3

Q ss_pred             HHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 020976           19 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL   98 (319)
Q Consensus        19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   98 (319)
                      .+...|+.++|.+......+..++ +..+|..+.-.+....++++|++.|......+.. |...|.-+...-++.|+++.
T Consensus        50 ~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   50 TLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             hhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhh
Confidence            344557777777777776665554 6777888877777788888888888888776433 66777777666677778887


Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCC-CccChhhH
Q 020976           99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSY  153 (319)
Q Consensus        99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~  153 (319)
                      ......++.+.. +.....|..+..++.-.|+...|..++++..... -.|+...+
T Consensus       128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~  182 (700)
T KOG1156|consen  128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY  182 (700)
T ss_pred             HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence            777777776653 3445567777778888899999999988887753 23444433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.04  E-value=3.5e-06  Score=77.84  Aligned_cols=301  Identities=8%  Similarity=-0.010  Sum_probs=195.1

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh----hh
Q 020976           15 IMLNGLCKNRYTDNALRMFRGLQKHGF------VPE--LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA----IT   82 (319)
Q Consensus        15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~   82 (319)
                      .....+...|++++|..+++...+.-.      .+.  ......+...+...|++++|...+++........+.    ..
T Consensus       414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a  493 (903)
T PRK04841        414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA  493 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            344556678899999999887754211      111  122233345566789999999999988763111121    23


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--CcccHHHHHHHHHHcCchHHHHHHHHHHHhC----CCc--c-Ch
Q 020976           83 YTTIMKCCFRNRKYKLGLEILSAMKRKGY---TF--DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQ--L-DI  150 (319)
Q Consensus        83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~  150 (319)
                      .+.+...+...|++++|...+++.....-   .+  ....+..+...+...|+++.|...+++....    +..  + ..
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            45566667789999999999888764311   11  1233455666778899999999998876652    211  1 12


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-ChhhH--
Q 020976          151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQG--FEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-NLEAY--  223 (319)
Q Consensus       151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--  223 (319)
                      ..+..+...+...|++++|...+.+.....  ..+  ....+..+.......|+++.|...+.......... ....+  
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~  653 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA  653 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence            334455667778899999999998875421  112  23344556667788999999999988875531111 11111  


Q ss_pred             ---HHHHHHHHhcCCHHHHHHHHHhhccCC---ch----hHHHHHHHHHccCChhHHHHHHHHHHHc----CCcc-CHHH
Q 020976          224 ---NCIVDRLGKDGKIDHAINVFESMEVKD---SF----TYSSMVHNLCKAKRLPSASKLLLSCLKS----GVRI-LKSA  288 (319)
Q Consensus       224 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~  288 (319)
                         ...+..+...|+.+.|..++.......   ..    .+..+..++...|++++|...+++....    |..+ ...+
T Consensus       654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~  733 (903)
T PRK04841        654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN  733 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence               112244556899999999987765441   11    1345677788899999999999987753    3322 2345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          289 QKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      ...+..++.+.|+.++|...+.+..+.
T Consensus       734 ~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        734 LILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            667778889999999999998887543

>PLN02789 farnesyltranstransferase

Probab=99.04  E-value=1.1e-06  Score=69.71  Aligned_cols=212  Identities=8%  Similarity=0.023  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAF  125 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  125 (319)
                      ++..+-..+...+..++|+.+.+++....+. +..+|+..-.++...| ++++++..++++.+.. +-+..+|+.....+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l  116 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence            3444555556677888888888888875332 4556666656666666 5688888888887764 44555666665555


Q ss_pred             HHcCch--HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc---CC
Q 020976          126 VKIGRL--KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA---GN  200 (319)
Q Consensus       126 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~  200 (319)
                      .+.|+.  ++++.+++.+.+.. +-+..+|+....++...|+++++++.++++++.++. +...|+.....+.+.   |.
T Consensus       117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~  194 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG  194 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence            566653  56777777777653 346777888778888888888888888888877655 555555555444433   22


Q ss_pred             h----hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHhhccC---CchhHHHHHHHHHc
Q 020976          201 I----KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD----GKIDHAINVFESMEVK---DSFTYSSMVHNLCK  263 (319)
Q Consensus       201 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~  263 (319)
                      .    ++.......++... +-+...|+.+...+...    ++..+|.+.+.+....   ++.....++..|+.
T Consensus       195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            2    34455554555443 44556666665555552    2334455555554332   33444455555543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=1.4e-07  Score=77.23  Aligned_cols=247  Identities=12%  Similarity=0.008  Sum_probs=183.7

Q ss_pred             HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976           18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK   97 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   97 (319)
                      .-+.+.|++.+|.-.|+...+.++. +...|..|.......++-..|+..+.+..+..+. |....-.|.-.|...|.-.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence            3466789999999999998887554 7899999999999999999999999999986433 6788888888999999989


Q ss_pred             HHHHHHHHHHhCCCC--------CCcccHHHHHHHHHHcCchHHHHHHHHHHHh-CCCccChhhHHHHHHHHHhcCCHHH
Q 020976           98 LGLEILSAMKRKGYT--------FDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-DGVQLDIVSYNTLINLYCKEGKLEA  168 (319)
Q Consensus        98 ~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~  168 (319)
                      .|++.++.-.....+        ++...-..  ..+.....+....++|-++.. .+..+|..+...|.-.|.-.|++++
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999998877544210        00000000  111222233445555555544 4444788888999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      |.+.|+..+...+. |...|+.|...++...+.++|+..|.+.++.  .|+ +++...|.-+|...|.+++|...|-...
T Consensus       449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            99999999987544 7789999999999999999999999999986  454 4666778888999999999999887654


Q ss_pred             cC-------------CchhHHHHHHHHHccCChhHHH
Q 020976          248 VK-------------DSFTYSSMVHNLCKAKRLPSAS  271 (319)
Q Consensus       248 ~~-------------~~~~~~~l~~~~~~~~~~~~a~  271 (319)
                      .-             +...|..|=.++.-.++.|.+.
T Consensus       526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence            21             1235666655565566655333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.01  E-value=2.5e-07  Score=71.05  Aligned_cols=185  Identities=11%  Similarity=0.021  Sum_probs=101.7

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh--hhHHH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-P-ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA--ITYTT   85 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~   85 (319)
                      ...+..+...+...|++++|...|+++...... | ...++..+..++...|++++|...++++.+..+....  .++..
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            444555555666666666666666666553221 1 1134455566666666666666666666553221111  12333


Q ss_pred             HHHHHHhc--------CChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHH
Q 020976           86 IMKCCFRN--------RKYKLGLEILSAMKRKGYTFDG-FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL  156 (319)
Q Consensus        86 l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  156 (319)
                      +..++...        |+++.|.+.++.+.+.  .|+. ..+..+.....    ...      ..        ......+
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~~  172 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL--------AGKELYV  172 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH--------HHHHHHH
Confidence            33344332        4555666666666544  2222 11111110000    000      00        0011245


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCC-C-cHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976          157 INLYCKEGKLEAAYLLLDEMEKQGFE-C-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI  214 (319)
Q Consensus       157 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  214 (319)
                      ...+.+.|++++|...+....+.... | ....+..+..++...|++++|..+++.+...
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            66788899999999999998876321 2 3467788888999999999999988887754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.98  E-value=1.1e-06  Score=77.76  Aligned_cols=149  Identities=14%  Similarity=0.090  Sum_probs=92.6

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +...+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+.+..+                 .++.
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~   91 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NLID   91 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence            4556777777777788888888887766654221 333344444455555554444333                 2223


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA  168 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  168 (319)
                      ......++..+..++..+...  .-+...+-.+..+|-+.|+.+++..+++++.+.. +-++.+.|.+...|... +.++
T Consensus        92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence            333333443333444444443  2334466777788888888888888888888765 45677788888888877 8888


Q ss_pred             HHHHHHHHHHc
Q 020976          169 AYLLLDEMEKQ  179 (319)
Q Consensus       169 a~~~~~~~~~~  179 (319)
                      |.+++.+....
T Consensus       168 A~~m~~KAV~~  178 (906)
T PRK14720        168 AITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHHH
Confidence            88887776653

>PF12854 PPR_1: PPR repeat

Probab=98.98  E-value=9.3e-10  Score=55.41  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             cCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          280 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       280 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      +|+.||..+|+.+|.+|++.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4789999999999999999999999999999985

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.97  E-value=5e-07  Score=69.36  Aligned_cols=60  Identities=10%  Similarity=0.031  Sum_probs=45.6

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHHcCC--ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          256 SMVHNLCKAKRLPSASKLLLSCLKSGV--RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      .+...+...|++++|...+++..+...  +.....+..+..++.+.|++++|..+++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455667888889999988888877522  123467788888899999999999888877654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.97  E-value=6.8e-07  Score=75.32  Aligned_cols=237  Identities=14%  Similarity=0.095  Sum_probs=179.9

Q ss_pred             CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976            6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT   85 (319)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   85 (319)
                      ++|--..=..+...+...|-...|..+|+++.         .|.-++.+|...|+..+|..+..+..+.  +|++..|..
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~  462 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL  462 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence            44444444566777888899999999987753         5566778888899999999998888773  678888888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976           86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK  165 (319)
Q Consensus        86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (319)
                      +.+......-+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.+ +....+|-....+..+.++
T Consensus       463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence            888776666688888887765433       11222223334789999999998877753 3466788888888999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976          166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES  245 (319)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  245 (319)
                      ++.|.+.|.......+. +...|+.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus       535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r  612 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR  612 (777)
T ss_pred             hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence            99999999988875332 45689999999999999999999999999887 55667788888888999999999999988


Q ss_pred             hccC-----CchhHHHHHHHHHc
Q 020976          246 MEVK-----DSFTYSSMVHNLCK  263 (319)
Q Consensus       246 ~~~~-----~~~~~~~l~~~~~~  263 (319)
                      +...     |..+...++....+
T Consensus       613 ll~~~~~~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  613 LLDLRKKYKDDEVLLIIVRTVLE  635 (777)
T ss_pred             HHHhhhhcccchhhHHHHHHHHh
Confidence            7533     55665555555443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.94  E-value=1.1e-06  Score=65.18  Aligned_cols=160  Identities=12%  Similarity=0.031  Sum_probs=96.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc
Q 020976           84 TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE  163 (319)
Q Consensus        84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  163 (319)
                      ..+-..+.-.|+-+....+........ +.|.......+....+.|++..|...+.+.... -++|..+|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence            444455555666665555555543221 334444455666666667777777777666654 355666677777777777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976          164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF  243 (319)
Q Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  243 (319)
                      |+++.|..-|.+..+.... ++...+.+.-.+.-.|+.+.|..++......+ +-+..+-..+.......|++++|..+.
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            7777777766666665332 44455666666666677777777766666543 335555666666666677777776666


Q ss_pred             Hhhc
Q 020976          244 ESME  247 (319)
Q Consensus       244 ~~~~  247 (319)
                      ..-.
T Consensus       226 ~~e~  229 (257)
T COG5010         226 VQEL  229 (257)
T ss_pred             cccc
Confidence            5433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.94  E-value=1.5e-06  Score=78.41  Aligned_cols=239  Identities=11%  Similarity=0.009  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-----ChhhHHHHHHHHHhcCChhHHHHH
Q 020976           28 NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP-----NAITYTTIMKCCFRNRKYKLGLEI  102 (319)
Q Consensus        28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~  102 (319)
                      .|.+. +++... -+-+...|-..|......++.++|.++.++.+.. +.+     -...|.++++.-...|.-+...++
T Consensus      1443 saeDf-erlvrs-sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAEDF-ERLVRS-SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CHHHH-HHHHhc-CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            34443 444333 2335667888888888999999999999988763 222     234577777777777878888899


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 020976          103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE  182 (319)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  182 (319)
                      |+++.+..  -....|..|...|.+.+..++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.-++
T Consensus      1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            99988763  23456888999999999999999999999886 3356778889999999999999999999988875222


Q ss_pred             C-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC------chhHH
Q 020976          183 C-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD------SFTYS  255 (319)
Q Consensus       183 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~  255 (319)
                      . ........+..-.+.|+.+.+..+|+-..... |.-...|+.+++.-.++|+.+.++.+|+++....      -..|.
T Consensus      1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred             hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence            1 22344555556668899999999999888753 5567889999999999999999999999987652      23566


Q ss_pred             HHHHHHHccCChhHHHHH
Q 020976          256 SMVHNLCKAKRLPSASKL  273 (319)
Q Consensus       256 ~l~~~~~~~~~~~~a~~~  273 (319)
                      ..+..--..|+-+.+..+
T Consensus      1676 kwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred             HHHHHHHhcCchhhHHHH
Confidence            666555556665544443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.93  E-value=6.9e-07  Score=66.03  Aligned_cols=120  Identities=9%  Similarity=0.032  Sum_probs=70.3

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHH-HhcCC--HHHH
Q 020976           93 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY-CKEGK--LEAA  169 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a  169 (319)
                      .++.+++...++...+.. +.+...|..+...|...|++++|...|++..... +.+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            444555555555555544 5556666666666666666666666666666642 23455555555543 45455  3666


Q ss_pred             HHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976          170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG  215 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  215 (319)
                      .+++++..+.++. +...+..+...+...|++++|...|+.+.+..
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            6666666665443 45555666666666666666666666666553

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.91  E-value=8.8e-07  Score=65.70  Aligned_cols=160  Identities=13%  Similarity=0.055  Sum_probs=116.8

Q ss_pred             CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 020976          114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID  193 (319)
Q Consensus       114 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  193 (319)
                      |... ..+-..+...|+-+....+....... .+.+.......+....+.|++..|...+++..... ++|..+|+.+.-
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence            3444 55566677777777777777665543 23355556667888888888888888888887653 447788888888


Q ss_pred             HHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHH
Q 020976          194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA  270 (319)
Q Consensus       194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a  270 (319)
                      +|.+.|+++.|..-|.+..+.. +-+...++.+.-.+.-.|+.+.|..++......   +..+-..+.......|++++|
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence            8888888888888888887763 345567777888888888888888888765533   677777788888888888888


Q ss_pred             HHHHHHH
Q 020976          271 SKLLLSC  277 (319)
Q Consensus       271 ~~~~~~~  277 (319)
                      ..+...-
T Consensus       222 ~~i~~~e  228 (257)
T COG5010         222 EDIAVQE  228 (257)
T ss_pred             Hhhcccc
Confidence            8776554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1e-05  Score=66.10  Aligned_cols=89  Identities=17%  Similarity=0.103  Sum_probs=68.3

Q ss_pred             HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCCh
Q 020976           18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITYTTIMKCCFRNRKY   96 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~   96 (319)
                      .+.+..|+++.|+..|.+...... +|...|..-..+|++.|++++|.+=-.+-.+  +.|+ +..|.....++.-.|++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence            456678889999999988887644 3888888888888888888888776666655  3555 45678888888888888


Q ss_pred             hHHHHHHHHHHhC
Q 020976           97 KLGLEILSAMKRK  109 (319)
Q Consensus        97 ~~a~~~~~~~~~~  109 (319)
                      ++|+..|.+-.+.
T Consensus        87 ~eA~~ay~~GL~~   99 (539)
T KOG0548|consen   87 EEAILAYSEGLEK   99 (539)
T ss_pred             HHHHHHHHHHhhc
Confidence            8888888776654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=4.1e-06  Score=62.34  Aligned_cols=259  Identities=11%  Similarity=0.034  Sum_probs=149.7

Q ss_pred             CCCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh
Q 020976            3 CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT   82 (319)
Q Consensus         3 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   82 (319)
                      ..+..|+...|+  ++-+.-.|++..++..-.......  -+...-.-+.++|...|++.....   +..... .|....
T Consensus         3 ~~~~g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqA   74 (299)
T KOG3081|consen    3 SMEAGPEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQA   74 (299)
T ss_pred             ccccCcchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHH
Confidence            334445444454  355555677777776655443321  344444556667777776654432   222221 333444


Q ss_pred             HHHHHHHHHhcCChhH-HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976           83 YTTIMKCCFRNRKYKL-GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC  161 (319)
Q Consensus        83 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (319)
                      +..+......-++.+. ..++.+.+.......+......-...|.+.|++++|++......      +......=...+.
T Consensus        75 vr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~l  148 (299)
T KOG3081|consen   75 VRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILL  148 (299)
T ss_pred             HHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHH
Confidence            4444333333333333 23344444444333333333334456778888888888776622      2333333445566


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHh----ccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 020976          162 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC----KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID  237 (319)
Q Consensus       162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  237 (319)
                      +..+.+-|.+.+++|.+.  . +..|.+.|..++.    ..+....|..+|++|-+. .+|+..+.+-...++...|+++
T Consensus       149 k~~r~d~A~~~lk~mq~i--d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~e  224 (299)
T KOG3081|consen  149 KMHRFDLAEKELKKMQQI--D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYE  224 (299)
T ss_pred             HHHHHHHHHHHHHHHHcc--c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHH
Confidence            777888888888888764  2 5556666666654    334677888888888764 4678888888888888888888


Q ss_pred             HHHHHHHhhccC---CchhHHHHHHHHHccCChhHH-HHHHHHHHH
Q 020976          238 HAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA-SKLLLSCLK  279 (319)
Q Consensus       238 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~  279 (319)
                      +|..+++....+   ++.+...++.+-...|...++ .+.+.++..
T Consensus       225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            888888887755   556665555555555655433 344455444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.86  E-value=3.3e-05  Score=64.75  Aligned_cols=297  Identities=12%  Similarity=0.127  Sum_probs=168.4

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC   90 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (319)
                      .|-..+..+.++|++..-...|+..+.. -+..-...|...+......+-++.+.+++++..+.    ++..-+..+..+
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L  179 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL  179 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence            3444555556667777777777665543 11122345666666666666666777777766652    333355566666


Q ss_pred             HhcCChhHHHHHHHHHHhCC------CC------------------------------------CC--cccHHHHHHHHH
Q 020976           91 FRNRKYKLGLEILSAMKRKG------YT------------------------------------FD--GFGYCTVIAAFV  126 (319)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~~------~~------------------------------------~~--~~~~~~ll~~~~  126 (319)
                      +..+++++|.+.+.......      .+                                    +|  ...|+.|...|.
T Consensus       180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI  259 (835)
T KOG2047|consen  180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI  259 (835)
T ss_pred             HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence            66666666666665553211      01                                    11  123666777777


Q ss_pred             HcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHcC----
Q 020976          127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK----------------------LEAAYLLLDEMEKQG----  180 (319)
Q Consensus       127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~----  180 (319)
                      +.|.+++|..+|++....  ..++.-|+.+..+|.....                      ++-.+..|+.+....    
T Consensus       260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l  337 (835)
T KOG2047|consen  260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL  337 (835)
T ss_pred             HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence            777777777777776664  2344455555555543211                      111222222222211    


Q ss_pred             -------CCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          181 -------FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN------LEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       181 -------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                             -..+...|..-+.  ...|+..+....+.+..+. +.|.      ...|..+...|...|+++.|+.+|++..
T Consensus       338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~  414 (835)
T KOG2047|consen  338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT  414 (835)
T ss_pred             HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence                   0112223332222  2245566667777776654 2221      2456778888888999999999999877


Q ss_pred             cCCc-------hhHHHHHHHHHccCChhHHHHHHHHHHHcCCc----------c-------CHHHHHHHHHHHHhcCCHH
Q 020976          248 VKDS-------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR----------I-------LKSAQKAVVDGLRHSGCRR  303 (319)
Q Consensus       248 ~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~g~~~  303 (319)
                      ..+-       .+|-.....-.+..+++.|+++.+......-.          |       +...|..+++..-..|-++
T Consensus       415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe  494 (835)
T KOG2047|consen  415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE  494 (835)
T ss_pred             cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence            6533       34444445555677888888888776542111          1       2235666666666778888


Q ss_pred             HHHHHHHHHHhhhc
Q 020976          304 EAKKIQSKIRMAKI  317 (319)
Q Consensus       304 ~a~~~~~~~~~~~i  317 (319)
                      .-..+++++-...|
T Consensus       495 stk~vYdriidLri  508 (835)
T KOG2047|consen  495 STKAVYDRIIDLRI  508 (835)
T ss_pred             HHHHHHHHHHHHhc
Confidence            88888888766544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.85  E-value=4e-07  Score=67.31  Aligned_cols=162  Identities=7%  Similarity=0.043  Sum_probs=121.9

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK   95 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   95 (319)
                      -+..|...|+++.+....+.+..    |. .       .+...++.+++...++......+ .+...|..+...|...|+
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~   88 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRND   88 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCC
Confidence            34568889999887555433221    11 0       12236677888888888877653 488999999999999999


Q ss_pred             hhHHHHHHHHHHhCCCCCCcccHHHHHHHH-HHcCc--hHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 020976           96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAF-VKIGR--LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL  172 (319)
Q Consensus        96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  172 (319)
                      +++|...|++..+.. +.+...+..+..++ ...|+  .++|.+++++..+.. +.+..++..+...+.+.|++++|...
T Consensus        89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~  166 (198)
T PRK10370         89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL  166 (198)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999886 55777788887764 67777  599999999999874 34778889999999999999999999


Q ss_pred             HHHHHHcCCCCcHHhHHHHHHH
Q 020976          173 LDEMEKQGFECDKYTHTILIDG  194 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~  194 (319)
                      |+++.+... |+..-+ .+|..
T Consensus       167 ~~~aL~l~~-~~~~r~-~~i~~  186 (198)
T PRK10370        167 WQKVLDLNS-PRVNRT-QLVES  186 (198)
T ss_pred             HHHHHhhCC-CCccHH-HHHHH
Confidence            999988643 344333 34443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.85  E-value=1.7e-05  Score=61.46  Aligned_cols=258  Identities=12%  Similarity=0.032  Sum_probs=188.0

Q ss_pred             HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhh-----------
Q 020976           17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTY-NILIKGLCKAGRLRTARWILKELGDSGHAPN--AIT-----------   82 (319)
Q Consensus        17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~-----------   82 (319)
                      ...|...|+...|+.=+++.++.  +||-..- ..-...+.+.|.++.|..-|+.+......-+  ...           
T Consensus        79 aT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~  156 (504)
T KOG0624|consen   79 ATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW  156 (504)
T ss_pred             HHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH
Confidence            44677889988899888888874  6764432 2234567799999999999999988643211  111           


Q ss_pred             -HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976           83 -YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC  161 (319)
Q Consensus        83 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (319)
                       ....+..+...|+...|+.....+.+.. +.|...+..-..+|...|++..|+.-++...+.. ..++.++..+-..+.
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y  234 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLY  234 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHH
Confidence             2233455667899999999999999875 7788889999999999999999998888777653 346667777888889


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCcHH----hHHHH---------HHHHhccCChhHHHHHHHHHHhcCCC---CChhhHHH
Q 020976          162 KEGKLEAAYLLLDEMEKQGFECDKY----THTIL---------IDGLCKAGNIKGARLHLEYMNKIGFD---SNLEAYNC  225 (319)
Q Consensus       162 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~  225 (319)
                      ..|+.+.++...++.++.  .||..    .|..+         +....+.++|.++..-.+...+....   .....+..
T Consensus       235 ~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~  312 (504)
T KOG0624|consen  235 TVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV  312 (504)
T ss_pred             hhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence            999999999999998875  44432    12211         12234556777787777777766422   12345566


Q ss_pred             HHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          226 IVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       226 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      +-.++...+++.+|++...++...   |..++---..+|.-...++.|+.-|+...+.
T Consensus       313 ~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  313 LCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             eeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            677888899999999999887765   4556666677888888888888888887765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=2e-05  Score=61.29  Aligned_cols=160  Identities=14%  Similarity=0.060  Sum_probs=88.2

Q ss_pred             HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976           17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY   96 (319)
Q Consensus        17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   96 (319)
                      +.-+....++..|+.+++--...+-.....+-..+..++...|++++|...+..+... -.|+...+..|.-++.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence            3445556677777777766544333222223333455666777888887777777663 344555566665555566666


Q ss_pred             hHHHHHHHHHHhCCC-------------------------CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChh
Q 020976           97 KLGLEILSAMKRKGY-------------------------TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV  151 (319)
Q Consensus        97 ~~a~~~~~~~~~~~~-------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (319)
                      .+|..+-.+..+..+                         .-+...-.+|.......-.+++|+.++.+....  .|...
T Consensus       108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~  185 (557)
T KOG3785|consen  108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI  185 (557)
T ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence            666655544321100                         000111122223333334567777777777664  23444


Q ss_pred             hHHH-HHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          152 SYNT-LINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       152 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      ..|. +.-+|.+..-++-+.++++-..++
T Consensus       186 alNVy~ALCyyKlDYydvsqevl~vYL~q  214 (557)
T KOG3785|consen  186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ  214 (557)
T ss_pred             hhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence            4443 344566777778888888777765

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.84  E-value=8.5e-07  Score=62.06  Aligned_cols=95  Identities=6%  Similarity=-0.106  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 020976           48 YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK  127 (319)
Q Consensus        48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  127 (319)
                      +..+...+...|++++|...|+.+....+ .+...|..+..++...|++++|...|++..... +.+...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            44455556666666666666666665432 255666666666666666666666666666554 4455666666666666


Q ss_pred             cCchHHHHHHHHHHHhC
Q 020976          128 IGRLKEATDYMEQMVTD  144 (319)
Q Consensus       128 ~~~~~~a~~~~~~~~~~  144 (319)
                      .|++++|...|+.....
T Consensus       105 ~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        105 MGEPGLAREAFQTAIKM  121 (144)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            66666666666666654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=1.3e-05  Score=59.38  Aligned_cols=189  Identities=18%  Similarity=0.161  Sum_probs=130.0

Q ss_pred             cCChHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976           23 NRYTDNALRMFRGLQK---HG-FVPELV-TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK   97 (319)
Q Consensus        23 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   97 (319)
                      ..+.++.++++..+..   .| ..|+.. .|..++-+....|+.+.|...++++.+.- +-+...-..-...+-..|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            3567888888887754   23 445544 35566667777888888888888887753 222222222223345568888


Q ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976           98 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME  177 (319)
Q Consensus        98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  177 (319)
                      +|.++++.+.+.+ +.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            8888888888776 666677776666666777777888888777776 56688888888888888888888888888887


Q ss_pred             HcCCCCcHHhHHHHHHHHhccC---ChhHHHHHHHHHHhcC
Q 020976          178 KQGFECDKYTHTILIDGLCKAG---NIKGARLHLEYMNKIG  215 (319)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~  215 (319)
                      -..+. ++..|..+...+.-.|   +.+.+.+.|.+..+..
T Consensus       182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            65332 4555566666544333   5566777777777654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.81  E-value=9.4e-06  Score=75.08  Aligned_cols=266  Identities=14%  Similarity=0.042  Sum_probs=175.1

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCChhhHHHH
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKELGDS----GH-APNAITYTTI   86 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l   86 (319)
                      +...+...|++++|...++...+.-...+.    ...+.+...+...|++++|...+++....    |. .+...++..+
T Consensus       458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l  537 (903)
T PRK04841        458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ  537 (903)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence            344566789999999999998763111121    34466667778899999999999888642    11 1112345566


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhC----CCCC---CcccHHHHHHHHHHcCchHHHHHHHHHHHhC--CCcc--ChhhHHH
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRK----GYTF---DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD--GVQL--DIVSYNT  155 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~  155 (319)
                      ...+...|++++|...+++....    +...   ....+..+...+...|++++|...+++....  ...+  ....+..
T Consensus       538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  617 (903)
T PRK04841        538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM  617 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence            67788899999999998876542    2111   1222344555677789999999999887653  1111  2334555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhH-----HHHHHHHhccCChhHHHHHHHHHHhcCCCCC---hhhHHHH
Q 020976          156 LINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTH-----TILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCI  226 (319)
Q Consensus       156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l  226 (319)
                      +...+...|++++|...+.......... ....+     ...+..+...|+.+.+...+...........   ......+
T Consensus       618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~  697 (903)
T PRK04841        618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI  697 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence            6677888999999999998875421110 11111     1122444567899999988776554221111   1113456


Q ss_pred             HHHHHhcCCHHHHHHHHHhhccC---------CchhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 020976          227 VDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG  281 (319)
Q Consensus       227 ~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  281 (319)
                      ..++...|+.++|...+++....         ...+...+..++...|+.++|...+.+..+..
T Consensus       698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            77788999999999999876543         22355666778889999999999999988763

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.80  E-value=1e-06  Score=77.00  Aligned_cols=146  Identities=12%  Similarity=0.099  Sum_probs=119.9

Q ss_pred             CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976            6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT   85 (319)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   85 (319)
                      +..++..+-.|.....+.|++++|..+++...+..+. +......+...+.+.+++++|...+++.....+. +......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence            4556888899999999999999999999999886333 5677788889999999999999999999987544 6778888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH
Q 020976           86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT  155 (319)
Q Consensus        86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  155 (319)
                      +..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+. ..+....|+.
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~  227 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTR  227 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHH
Confidence            8889999999999999999999743 455788888999999999999999999998775 2233344443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=5.2e-05  Score=62.91  Aligned_cols=54  Identities=15%  Similarity=0.043  Sum_probs=35.6

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 020976           15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK   69 (319)
Q Consensus        15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   69 (319)
                      +=++.+...|++++|....+++...+. -+...+..-+-+..+.+++++|+.+.+
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ik   70 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIK   70 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHH
Confidence            345667778888888888888887653 244555555556666777777765443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.80  E-value=4.6e-07  Score=63.40  Aligned_cols=108  Identities=10%  Similarity=-0.179  Sum_probs=90.9

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC   89 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   89 (319)
                      +..+..+...+...|++++|...|+......+ .+...|..+..++...|++++|...|+....... .+...+..+..+
T Consensus        24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~  101 (144)
T PRK15359         24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVC  101 (144)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence            33466678889999999999999999988754 3889999999999999999999999999998653 478899999999


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCcccHHH
Q 020976           90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCT  120 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  120 (319)
                      +...|++++|...|+...+.. +.++..+..
T Consensus       102 l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~  131 (144)
T PRK15359        102 LKMMGEPGLAREAFQTAIKMS-YADASWSEI  131 (144)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence            999999999999999998874 334444433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.78  E-value=1.2e-05  Score=68.59  Aligned_cols=252  Identities=12%  Similarity=0.038  Sum_probs=169.5

Q ss_pred             hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 020976           26 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA  105 (319)
Q Consensus        26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  105 (319)
                      ..++++.+++..+.+.. |+...-.+.--|+..++.+.|.+...+..+.+..-++..|..+...+...+++.+|+.+.+.
T Consensus       460 h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~  538 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA  538 (799)
T ss_pred             HHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            35677788888775443 33333334445777889999999999998876666888999998888899999999998877


Q ss_pred             HHhC-CCC------------------CCcccHHHHHHHHHH------c-----------------CchHHHHHHHHHHH-
Q 020976          106 MKRK-GYT------------------FDGFGYCTVIAAFVK------I-----------------GRLKEATDYMEQMV-  142 (319)
Q Consensus       106 ~~~~-~~~------------------~~~~~~~~ll~~~~~------~-----------------~~~~~a~~~~~~~~-  142 (319)
                      .... |..                  .-..|+..++..+-.      .                 ++..++.+....+. 
T Consensus       539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~  618 (799)
T KOG4162|consen  539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS  618 (799)
T ss_pred             HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence            6543 110                  001112222221110      0                 01111111111110 


Q ss_pred             -------hCC---------Cc--cC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc
Q 020976          143 -------TDG---------VQ--LD------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA  198 (319)
Q Consensus       143 -------~~~---------~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  198 (319)
                             ..|         +.  |+      ...|......+.+.+..++|...+.+..... ......|......+...
T Consensus       619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~  697 (799)
T KOG4162|consen  619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVK  697 (799)
T ss_pred             HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHH
Confidence                   001         00  11      1124455566777788888887777776653 23556677777788889


Q ss_pred             CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH--HHHhhccC---CchhHHHHHHHHHccCChhHHHHH
Q 020976          199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAIN--VFESMEVK---DSFTYSSMVHNLCKAKRLPSASKL  273 (319)
Q Consensus       199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~  273 (319)
                      |.+++|...|......+ |.++....++..++.+.|+...|..  ++..+...   ++..|..+...+-+.|+.+.|.+.
T Consensus       698 ~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec  776 (799)
T KOG4162|consen  698 GQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC  776 (799)
T ss_pred             HhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence            99999999999888764 4556888999999999999888877  88877654   788999999999999999999999


Q ss_pred             HHHHHHc
Q 020976          274 LLSCLKS  280 (319)
Q Consensus       274 ~~~~~~~  280 (319)
                      |+.....
T Consensus       777 f~aa~qL  783 (799)
T KOG4162|consen  777 FQAALQL  783 (799)
T ss_pred             HHHHHhh
Confidence            9988765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=5.8e-06  Score=61.59  Aligned_cols=224  Identities=12%  Similarity=0.062  Sum_probs=124.8

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHhhCCCCCChhhHHHHHHH
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR-WILKELGDSGHAPNAITYTTIMKC   89 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~   89 (319)
                      ..-..+-.+|...|.+...+.   +.+... .|.......+......-++.++-. ++.+.+.......+......-...
T Consensus        42 e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i  117 (299)
T KOG3081|consen   42 ELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAII  117 (299)
T ss_pred             HHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHH
Confidence            333445566676776644332   333222 344444444444444344433333 333444433333232333333445


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----cCC
Q 020976           90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----EGK  165 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~  165 (319)
                      |...+++++|++......      +......=...+.+..+.+-|.+.++.|.+.   .+..+.+.|.+++.+    .+.
T Consensus       118 ~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek  188 (299)
T KOG3081|consen  118 YMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK  188 (299)
T ss_pred             hhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence            677777888777776521      2222333334555667777777777777764   245556655555544    345


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHH
Q 020976          166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID-HAINVFE  244 (319)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~  244 (319)
                      +.+|.-+|++|.+. ..|+..+.+-...++...|++++|..+++...... ..++.+...++-+....|... ...+.+.
T Consensus       189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~  266 (299)
T KOG3081|consen  189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLS  266 (299)
T ss_pred             hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            77777788777653 46677777777777777788888888887777664 345566655555555555543 3344555


Q ss_pred             hhccC
Q 020976          245 SMEVK  249 (319)
Q Consensus       245 ~~~~~  249 (319)
                      ++...
T Consensus       267 QLk~~  271 (299)
T KOG3081|consen  267 QLKLS  271 (299)
T ss_pred             HHHhc
Confidence            55433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.78  E-value=4.7e-05  Score=61.80  Aligned_cols=182  Identities=13%  Similarity=0.096  Sum_probs=132.3

Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHH
Q 020976           78 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI  157 (319)
Q Consensus        78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  157 (319)
                      |+...+...+.+......-..+..++.+..+.+  -...-|. ....+...|+++.|+..++.+... .|-|........
T Consensus       272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~  347 (484)
T COG4783         272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYG-RALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAG  347 (484)
T ss_pred             ccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHH-HHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHH
Confidence            455556666655444433333333333332211  1122233 333556679999999999998886 345666667778


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 020976          158 NLYCKEGKLEAAYLLLDEMEKQGFECD-KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI  236 (319)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  236 (319)
                      ..+.+.++.++|.+.++.+...  .|+ ....-.+..++.+.|++.++..+++...... +.|...|..|.++|...|+.
T Consensus       348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence            8899999999999999999986  444 5566778889999999999999999988764 77889999999999999998


Q ss_pred             HHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          237 DHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       237 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      .++..-..              ..|.-.|+++.|...+....+.
T Consensus       425 ~~a~~A~A--------------E~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         425 AEALLARA--------------EGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHH--------------HHHHhCCCHHHHHHHHHHHHHh
Confidence            88876554              3566789999999999888775

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=1e-05  Score=61.41  Aligned_cols=163  Identities=15%  Similarity=0.189  Sum_probs=95.2

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI-LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      +......|..+|-...++..|-+.++++...  .|...-|.. -...+.+.+.+..|+++...|.+.   |+...-..-+
T Consensus        43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqL  117 (459)
T KOG4340|consen   43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQL  117 (459)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHH
Confidence            5666788888888999999999999998774  355554432 234555778888888888777652   2222222222


Q ss_pred             HHH--HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHHHhcC
Q 020976           88 KCC--FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEG  164 (319)
Q Consensus        88 ~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~  164 (319)
                      .+.  ...+++..+..++++....|   +..+.+...-...+.|+++.|.+-|+...+- |.. +...|+..+ +..+.|
T Consensus       118 qaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~  192 (459)
T KOG4340|consen  118 QAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSR  192 (459)
T ss_pred             HHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhh
Confidence            222  23455666666666554322   2333333333445666677777666666653 333 334454443 334556


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 020976          165 KLEAAYLLLDEMEKQGF  181 (319)
Q Consensus       165 ~~~~a~~~~~~~~~~~~  181 (319)
                      +++.|++...++.++|+
T Consensus       193 qyasALk~iSEIieRG~  209 (459)
T KOG4340|consen  193 QYASALKHISEIIERGI  209 (459)
T ss_pred             hHHHHHHHHHHHHHhhh
Confidence            66667766666665543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.76  E-value=4.3e-06  Score=73.20  Aligned_cols=136  Identities=11%  Similarity=0.064  Sum_probs=116.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHH
Q 020976           41 FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT  120 (319)
Q Consensus        41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  120 (319)
                      ...++..+..|.......|..++|..+++.+.+..+. +......+...+.+.+++++|+..+++..... +-+......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence            4456888899999999999999999999999986332 56778888999999999999999999999885 556777788


Q ss_pred             HHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      +..++.+.|++++|..+|+++... .+-+..++..+..++...|+.++|...|+...+.
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            888899999999999999999984 3345788889999999999999999999988754

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.75  E-value=7e-05  Score=61.57  Aligned_cols=126  Identities=13%  Similarity=0.036  Sum_probs=94.3

Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHH
Q 020976          187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC  262 (319)
Q Consensus       187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~  262 (319)
                      +|..++..-.+..-.+.|..+|.+..+.+..+ +..+.++++..++ .++.+-|.++|+--...   ++.--...+..+.
T Consensus       368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~  446 (656)
T KOG1914|consen  368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS  446 (656)
T ss_pred             ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            46666777777777888888888888876666 5566666766554 57788888888865443   5555567777888


Q ss_pred             ccCChhHHHHHHHHHHHcCCccC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          263 KAKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       263 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      ..++-..+..+|++.+..++.|+  ...|..+++--+.-|+...+.++-+++.
T Consensus       447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~  499 (656)
T KOG1914|consen  447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF  499 (656)
T ss_pred             HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            88888889999999888766554  3688888888888899888888776654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=1.3e-05  Score=68.95  Aligned_cols=278  Identities=15%  Similarity=0.097  Sum_probs=142.4

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhC-C--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKH-G--------FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN   79 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   79 (319)
                      +...|..+...|.+..+++-|.-.+-.|... |        -.|+ .+-....-.....|-+++|..+|.+.++      
T Consensus       756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------  828 (1416)
T KOG3617|consen  756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------  828 (1416)
T ss_pred             hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence            3456777777777777666665555444321 1        0111 1212222233455666777777766654      


Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHH----------hCC----
Q 020976           80 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV----------TDG----  145 (319)
Q Consensus        80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------~~~----  145 (319)
                         |..|=+.|...|.|++|.++-+.-.+..+   ..||......+-..+|.+.|++.|++..          ...    
T Consensus       829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~  902 (1416)
T KOG3617|consen  829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI  902 (1416)
T ss_pred             ---HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence               23333445566777777766554322211   2344444555555677777777665431          110    


Q ss_pred             -----CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh
Q 020976          146 -----VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL  220 (319)
Q Consensus       146 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  220 (319)
                           -..|...|.....-+...|+.+.|+.+|.....         |..+++..|-.|+.++|-++-++      ..|.
T Consensus       903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~  967 (1416)
T KOG3617|consen  903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDK  967 (1416)
T ss_pred             HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccH
Confidence                 112444566666666677888888877766543         23344444445555555444332      1233


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHhhccC--------------------------C-----------chhHHHHHHHHHc
Q 020976          221 EAYNCIVDRLGKDGKIDHAINVFESMEVK--------------------------D-----------SFTYSSMVHNLCK  263 (319)
Q Consensus       221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------~-----------~~~~~~l~~~~~~  263 (319)
                      ...-.+.+.|...|++.+|..+|.+...-                          +           +.-+...+..|-+
T Consensus       968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen  968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHK 1047 (1416)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHh
Confidence            34444555555555555555555443210                          0           0011223334555


Q ss_pred             cCChhHHHHHHHH--------HHHc--CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          264 AKRLPSASKLLLS--------CLKS--GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       264 ~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      .|.+.+|+++.-+        ++..  ....|+...+.-.+-++...++++|..++-..++
T Consensus      1048 AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred             hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            6666555543211        1122  2233666666666777777788888777655543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.73  E-value=5.4e-06  Score=70.50  Aligned_cols=161  Identities=18%  Similarity=0.223  Sum_probs=69.6

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL  171 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  171 (319)
                      ...+|.+|+.+++.+....  .-...|..+...|...|+++.|.++|.+.-         .++-.|..|.+.|+|+.|.+
T Consensus       744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k  812 (1636)
T KOG3616|consen  744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK  812 (1636)
T ss_pred             hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence            3444555555555444432  122334444555555555555555554321         13334455555555555555


Q ss_pred             HHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-C
Q 020976          172 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-D  250 (319)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~  250 (319)
                      +-.+..  |+......|-.-..-.-+.|++.+|++++-.+.    .|+     ..+.+|-+.|..+..+++..+-... -
T Consensus       813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l  881 (1636)
T KOG3616|consen  813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHL  881 (1636)
T ss_pred             HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhh
Confidence            444332  222233333333333444455555544442221    122     1234444444444444444433222 2


Q ss_pred             chhHHHHHHHHHccCChhHHHHHH
Q 020976          251 SFTYSSMVHNLCKAKRLPSASKLL  274 (319)
Q Consensus       251 ~~~~~~l~~~~~~~~~~~~a~~~~  274 (319)
                      ..+...+..-|-..|+...|..-|
T Consensus       882 ~dt~~~f~~e~e~~g~lkaae~~f  905 (1636)
T KOG3616|consen  882 HDTHKHFAKELEAEGDLKAAEEHF  905 (1636)
T ss_pred             hHHHHHHHHHHHhccChhHHHHHH
Confidence            223344444455555555555444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.71  E-value=8.9e-06  Score=72.27  Aligned_cols=229  Identities=10%  Similarity=0.003  Sum_probs=151.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH
Q 020976           43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA-ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV  121 (319)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  121 (319)
                      .+...+..|+..+...+++++|.++.+...+.  .|+. ..|-.+...+.+.++...+..+                 .+
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~   89 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL   89 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence            35678888999998999999999999977764  3443 3344443455566665444433                 22


Q ss_pred             HHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCCh
Q 020976          122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI  201 (319)
Q Consensus       122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  201 (319)
                      +.......++..+..+...+...  .-+..++..+..+|-+.|+.++|..+++++.+..+. +....+.+.-.|+.. +.
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hH
Confidence            33333333443344444455443  235557888999999999999999999999998744 788899999999988 99


Q ss_pred             hHHHHHHHHHHhcCCCCChhhHHHHHHHH-----HhcCCHHHHHHHHHhhccC-----CchhHHHHHHHHHccCChhHHH
Q 020976          202 KGARLHLEYMNKIGFDSNLEAYNCIVDRL-----GKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSAS  271 (319)
Q Consensus       202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~  271 (319)
                      ++|..++.+....-+  +..-|+.+...+     ....+++.-..+.+.+...     -..++-.+-..|-..++++++.
T Consensus       166 ~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i  243 (906)
T PRK14720        166 EKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI  243 (906)
T ss_pred             HHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence            999999988876411  111122222111     1223334444444444332     3345666667788889999999


Q ss_pred             HHHHHHHHcCCccCHHHHHHHHHHHH
Q 020976          272 KLLLSCLKSGVRILKSAQKAVVDGLR  297 (319)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~l~~~~~  297 (319)
                      .+++.+++.... |.....-++.+|.
T Consensus       244 ~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        244 YILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHhcCCc-chhhHHHHHHHHH
Confidence            999999987544 6677788888875

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.68  E-value=2.4e-06  Score=59.37  Aligned_cols=95  Identities=15%  Similarity=0.220  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV  126 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  126 (319)
                      ....+...+...|++++|.+.|+.+...+. .+...+..+..++...|++++|...+++..+.+ +.+...+..+..++.
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~   96 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence            334444444555555555555555544321 244444455555555555555555555544443 333444444444555


Q ss_pred             HcCchHHHHHHHHHHHh
Q 020976          127 KIGRLKEATDYMEQMVT  143 (319)
Q Consensus       127 ~~~~~~~a~~~~~~~~~  143 (319)
                      ..|++++|...|+...+
T Consensus        97 ~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        97 ALGEPESALKALDLAIE  113 (135)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.65  E-value=2.8e-06  Score=58.97  Aligned_cols=98  Identities=13%  Similarity=0.094  Sum_probs=61.9

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHH
Q 020976           80 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL  159 (319)
Q Consensus        80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  159 (319)
                      ......+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...++.....+ +.+...+..+..+
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~   94 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC   94 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence            3445555566666677777777776666554 4455666666666666677777777776665542 3345555666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHc
Q 020976          160 YCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       160 ~~~~~~~~~a~~~~~~~~~~  179 (319)
                      +...|++++|...|+...+.
T Consensus        95 ~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        95 LLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            66677777777777666654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=4.8e-05  Score=56.43  Aligned_cols=172  Identities=13%  Similarity=0.095  Sum_probs=130.5

Q ss_pred             CCcchHh-HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976            6 LTPCTAT-FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT   84 (319)
Q Consensus         6 ~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (319)
                      +.|+..+ |..++-+....|+.+.|...++.+...- +-+...-..-...+-..|++++|.++++.+.+.+ +.|..++-
T Consensus        47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~K  124 (289)
T KOG3060|consen   47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRK  124 (289)
T ss_pred             cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHH
Confidence            5566655 6778888889999999999999998763 3233333333333456799999999999999876 34677777


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC
Q 020976           85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG  164 (319)
Q Consensus        85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (319)
                      .-+-..-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.. |.+...|..+...+.-.|
T Consensus       125 RKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~g  202 (289)
T KOG3060|consen  125 RKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQG  202 (289)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHh
Confidence            6666666778888888888888776 57899999999999999999999999999999863 345555666666655544


Q ss_pred             ---CHHHHHHHHHHHHHcCC
Q 020976          165 ---KLEAAYLLLDEMEKQGF  181 (319)
Q Consensus       165 ---~~~~a~~~~~~~~~~~~  181 (319)
                         +.+.+.++|.+..+...
T Consensus       203 g~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  203 GAENLELARKYYERALKLNP  222 (289)
T ss_pred             hHHHHHHHHHHHHHHHHhCh
Confidence               46678888888887643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=0.00017  Score=59.94  Aligned_cols=143  Identities=17%  Similarity=-0.025  Sum_probs=96.2

Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHH--------HHHhcCCCCChhhHHHHHHHHHhcCCH
Q 020976          165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE--------YMNKIGFDSNLEAYNCIVDRLGKDGKI  236 (319)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~  236 (319)
                      .+..+.+++...-+....-+.......+......|+++.|..++.        .+.+.+..|  .+...++..+.+.++.
T Consensus       356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~  433 (652)
T KOG2376|consen  356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN  433 (652)
T ss_pred             HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence            466777777777665443334556667777888999999999998        555555444  4556667777777776


Q ss_pred             HHHHHHHHhhccC----------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHH
Q 020976          237 DHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK  306 (319)
Q Consensus       237 ~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  306 (319)
                      +.|..++.+....          -..++..++..-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++.|.
T Consensus       434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~  511 (652)
T KOG2376|consen  434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE  511 (652)
T ss_pred             ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence            6666666654422          11233444444556799999999999999863 45888888899888765 455665


Q ss_pred             HHHHH
Q 020976          307 KIQSK  311 (319)
Q Consensus       307 ~~~~~  311 (319)
                      .+-++
T Consensus       512 ~l~k~  516 (652)
T KOG2376|consen  512 SLSKK  516 (652)
T ss_pred             HHhhc
Confidence            55433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=1.6e-05  Score=61.85  Aligned_cols=190  Identities=11%  Similarity=0.113  Sum_probs=102.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCc-------hHHHHHHHHHHHhCCCccC-hhhHHHHH
Q 020976           86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR-------LKEATDYMEQMVTDGVQLD-IVSYNTLI  157 (319)
Q Consensus        86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~  157 (319)
                      |+-.|.+.+++++|..+...+.    |.++.-|..-.-.+...|+       ..-|.+.|+-.-.++...| +.-...+.
T Consensus       291 L~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA  366 (557)
T KOG3785|consen  291 LIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA  366 (557)
T ss_pred             heeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence            4444667777777776665543    2222222211112222222       3344455544444433322 23345566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 020976          158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID  237 (319)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  237 (319)
                      +++.-..++++.+-.+..+..-=..-|... ..+.++.+..|.+.+|+++|-.+....++.+..-...+.++|...++++
T Consensus       367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~  445 (557)
T KOG3785|consen  367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ  445 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence            666666677777777766655422323333 3466677777777777777766655443333333345566777777777


Q ss_pred             HHHHHHHhhccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          238 HAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       238 ~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      .|++++-.+..+  .......+..-|.+.+.+--|.+.|+.+...
T Consensus       446 lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l  490 (557)
T KOG3785|consen  446 LAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL  490 (557)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence            777777766655  2223334445566666666666666665544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.59  E-value=3.3e-06  Score=68.50  Aligned_cols=127  Identities=15%  Similarity=0.156  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF  125 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  125 (319)
                      .....|+..+...++++.|..+|+++.+..  |+  ....+++.+...++-.+|.+++++..+.. +.+......-...+
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            344556666667788888888888888753  33  44456777777777788888888777653 44555555556667


Q ss_pred             HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      .+.++++.|+.+.+++... .|.+..+|..|..+|...|+++.|+..++.+.-
T Consensus       245 l~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            7888888888888888876 234556888888888888888888888877653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=0.00011  Score=65.03  Aligned_cols=56  Identities=21%  Similarity=0.212  Sum_probs=23.3

Q ss_pred             cHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      .|..+..+-.+.|...+|++-|-+.      .|+..|..++....+.|.|++..+.+....+
T Consensus      1106 vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            3444444444444444443333211      1333444444444444444444444433333

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=0.00014  Score=64.46  Aligned_cols=249  Identities=12%  Similarity=0.082  Sum_probs=145.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 020976           24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL  103 (319)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  103 (319)
                      +.+++|.+.-++..      .+..|..+..+-.+.|.+.+|.+-|-+.      -|+..|..+++...+.|.|++..+++
T Consensus      1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred             hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence            55666666554442      3466777777777777777776665432      25566777777777777777777777


Q ss_pred             HHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhh--------------------------HHHHH
Q 020976          104 SAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS--------------------------YNTLI  157 (319)
Q Consensus       104 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------------------~~~l~  157 (319)
                      ....+..-.|..  =..|+-+|++.++..+.+.++.       .|+...                          |..+.
T Consensus      1157 ~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La 1227 (1666)
T KOG0985|consen 1157 LMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLA 1227 (1666)
T ss_pred             HHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHH
Confidence            666655434433  3466667777776665544331       233333                          44444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 020976          158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID  237 (319)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  237 (319)
                      ..+...|++..|.+.-++.      .+..||..+-.+|...+.+.-|.     |-..++.....-...++..|...|-++
T Consensus      1228 ~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred             HHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHH
Confidence            4444455555444433322      14455665555555554443331     222223334455677888999999999


Q ss_pred             HHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHc-CCc------cCHHHHHHHHHHHHhcCCHHHH
Q 020976          238 HAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVR------ILKSAQKAVVDGLRHSGCRREA  305 (319)
Q Consensus       238 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a  305 (319)
                      +.+.+++.....   ....|+.+.-.|++- ++++..+.++-.... +++      -....|..++-.|.+-..+|.|
T Consensus      1297 ElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred             HHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            999999876543   556777777767654 456666555544332 111      1234666666667666666665

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.56  E-value=1.5e-07  Score=47.71  Aligned_cols=33  Identities=30%  Similarity=0.565  Sum_probs=22.7

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP   43 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   43 (319)
                      .+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            466777777777777777777777776666665

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.54  E-value=9e-06  Score=57.11  Aligned_cols=85  Identities=13%  Similarity=0.219  Sum_probs=34.9

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976           88 KCCFRNRKYKLGLEILSAMKRKGYTFD--GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK  165 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (319)
                      ..+...|++++|...|+.+......++  ......+...+...|++++|+..++.....  ......+.....++.+.|+
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~  133 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD  133 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence            344444455555555544444321111  112222334444445555555554442221  1222333444444555555


Q ss_pred             HHHHHHHHH
Q 020976          166 LEAAYLLLD  174 (319)
Q Consensus       166 ~~~a~~~~~  174 (319)
                      +++|...|+
T Consensus       134 ~~~A~~~y~  142 (145)
T PF09976_consen  134 YDEARAAYQ  142 (145)
T ss_pred             HHHHHHHHH
Confidence            555554444

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.53  E-value=1.8e-07  Score=47.85  Aligned_cols=33  Identities=33%  Similarity=0.827  Sum_probs=24.9

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE   44 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   44 (319)
                      +||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            577777777777777777777777777777776

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.53  E-value=4e-05  Score=65.46  Aligned_cols=102  Identities=23%  Similarity=0.229  Sum_probs=45.9

Q ss_pred             hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHH
Q 020976          196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLL  275 (319)
Q Consensus       196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  275 (319)
                      .....|.+|..+++.+...+  ....-|..+.+.|...|+++.|.++|.+..     .++-.|..|.+.|+++.|.++-.
T Consensus       743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~  815 (1636)
T KOG3616|consen  743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAE  815 (1636)
T ss_pred             hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHH
Confidence            34445555555555544432  122334445555555555555555554322     23344455555555555555544


Q ss_pred             HHHHcCCccCHHHHHHHHHHHHhcCCHHHHH
Q 020976          276 SCLKSGVRILKSAQKAVVDGLRHSGCRREAK  306 (319)
Q Consensus       276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  306 (319)
                      ++.  |.......|..-..-+-+.|++.+|.
T Consensus       816 e~~--~~e~t~~~yiakaedldehgkf~eae  844 (1636)
T KOG3616|consen  816 ECH--GPEATISLYIAKAEDLDEHGKFAEAE  844 (1636)
T ss_pred             Hhc--CchhHHHHHHHhHHhHHhhcchhhhh
Confidence            432  22323333333333334444444333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.52  E-value=0.00021  Score=58.11  Aligned_cols=139  Identities=16%  Similarity=0.167  Sum_probs=113.0

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC-hhhHHHHHHHHHhcCCHH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-IVSYNTLINLYCKEGKLE  167 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~  167 (319)
                      .+...|++++|+..++.+...- +-|+..+......+.+.++.++|.+.++.+...  .|+ ....-.+..++.+.|++.
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence            4557889999999999988773 556666667778899999999999999999986  344 666778889999999999


Q ss_pred             HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      +|..+++........ |+..|..|.++|...|+..++....                  ...|...|+++.|...+....
T Consensus       392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~  452 (484)
T COG4783         392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRAS  452 (484)
T ss_pred             HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHH
Confidence            999999999887544 8889999999999999988776544                  345566788888888877666


Q ss_pred             cC
Q 020976          248 VK  249 (319)
Q Consensus       248 ~~  249 (319)
                      +.
T Consensus       453 ~~  454 (484)
T COG4783         453 QQ  454 (484)
T ss_pred             Hh
Confidence            44

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.51  E-value=1.6e-05  Score=55.88  Aligned_cols=19  Identities=21%  Similarity=0.205  Sum_probs=7.7

Q ss_pred             HhccCChhHHHHHHHHHHh
Q 020976          195 LCKAGNIKGARLHLEYMNK  213 (319)
Q Consensus       195 ~~~~~~~~~a~~~~~~~~~  213 (319)
                      +...|++++|...|+.+..
T Consensus        58 ~~~~g~~~~A~~~l~~~~~   76 (145)
T PF09976_consen   58 AYEQGDYDEAKAALEKALA   76 (145)
T ss_pred             HHHCCCHHHHHHHHHHHHh
Confidence            3333444444444444433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=6e-05  Score=65.15  Aligned_cols=239  Identities=15%  Similarity=0.081  Sum_probs=158.1

Q ss_pred             hHhHHHHHH--HHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC---------CCCC
Q 020976           10 TATFNIMLN--GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS---------GHAP   78 (319)
Q Consensus        10 ~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~   78 (319)
                      ..|-..+++  .|...|+.+.|.+-.+.++      +...|..+.+.|.+.++.+-|.-.+-.|...         .-.|
T Consensus       726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~  799 (1416)
T KOG3617|consen  726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG  799 (1416)
T ss_pred             HHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence            334444443  4677899999988777665      4578999999999988887776655554321         1122


Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHH
Q 020976           79 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN  158 (319)
Q Consensus        79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  158 (319)
                      + .+=....-.....|..++|+.+|.+-++.         ..|=..|-..|.+++|.++-+.--..  . -..||.....
T Consensus       800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~  866 (1416)
T KOG3617|consen  800 E-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAK  866 (1416)
T ss_pred             c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHH
Confidence            2 22222333356789999999999988754         34445677789999998876643221  1 2345666677


Q ss_pred             HHHhcCCHHHHHHHHHHHH----------HcC---------CCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC
Q 020976          159 LYCKEGKLEAAYLLLDEME----------KQG---------FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN  219 (319)
Q Consensus       159 ~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  219 (319)
                      -+...++.+.|++.|++..          ...         -..|...|..-.......|+.+.|+.+|.....      
T Consensus       867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------  940 (1416)
T KOG3617|consen  867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------  940 (1416)
T ss_pred             HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence            7777888888888886531          110         112444555555556667777777777766543      


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976          220 LEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL  278 (319)
Q Consensus       220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  278 (319)
                         |-++++..+-.|+.++|-++-++-.  |......+.+.|-..|++.+|...|.+..
T Consensus       941 ---~fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 ---YFSMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ---hhhheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence               4566777788888888888877533  55566678888888888888888887653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.50  E-value=1.2e-05  Score=65.40  Aligned_cols=123  Identities=16%  Similarity=0.123  Sum_probs=95.8

Q ss_pred             HHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc
Q 020976          119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA  198 (319)
Q Consensus       119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  198 (319)
                      ..|+..+...++++.|..+|+++.+..  |+  ....+++.+...++..+|.+++.+..+.... +..........+.+.
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence            345556666788999999999988863  44  4455778888888888999999888865433 566667777778888


Q ss_pred             CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      ++++.|..+.+++.+.. |-+..+|..|..+|...|+++.|+..++.++
T Consensus       248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            99999999999988863 4455789999999999999999998888765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.42  E-value=5.7e-07  Score=45.89  Aligned_cols=33  Identities=52%  Similarity=0.865  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPN   79 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   79 (319)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            567777777777777777777777777776665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.40  E-value=1.1e-05  Score=66.00  Aligned_cols=123  Identities=13%  Similarity=0.132  Sum_probs=75.8

Q ss_pred             CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhH
Q 020976           76 HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK--GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY  153 (319)
Q Consensus        76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  153 (319)
                      .+.+......+++.+....+++.+..++.++...  ....-+.|..++++.|...|..+.++.+++.=..-|+-||..++
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            3445555666666666666666666666666543  22223444556677777777777777777666666777777777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc
Q 020976          154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA  198 (319)
Q Consensus       154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  198 (319)
                      +.++..+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            777777777777777777776666655555555555555544443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.39  E-value=6.7e-07  Score=45.28  Aligned_cols=33  Identities=33%  Similarity=0.536  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAP   78 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   78 (319)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356666666666666666666666666665554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.37  E-value=0.0014  Score=57.53  Aligned_cols=222  Identities=15%  Similarity=0.078  Sum_probs=114.5

Q ss_pred             hhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 020976           21 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG--LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL   98 (319)
Q Consensus        21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   98 (319)
                      ...+++.+|..-...+.+.  .||.. |...+.+  ..+.|+.++|..+++.....+.. |..|...+-.+|...++.++
T Consensus        20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence            4456677777777666553  23322 2222222  34667777777777666655444 66677777777777777777


Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC----------HHH
Q 020976           99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK----------LEA  168 (319)
Q Consensus        99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~  168 (319)
                      |..+|++..+.  -|+......+..+|.+.+++.+-.+.=-++.+. .+-....|-.+++...+.-.          ..-
T Consensus        96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L  172 (932)
T KOG2053|consen   96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL  172 (932)
T ss_pred             HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence            77777777655  345555556666666666655433333333332 33344444444444433211          123


Q ss_pred             HHHHHHHHHHcC-CCCcHHhHHHHHHHHhccCChhHHHHHHH-HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976          169 AYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNIKGARLHLE-YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM  246 (319)
Q Consensus       169 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  246 (319)
                      |.+.++.+.+.+ ..-+..-.......+...|++++|..++. ...+.-.+.+...-+.-+..+...+++.+..++-.++
T Consensus       173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L  252 (932)
T KOG2053|consen  173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL  252 (932)
T ss_pred             HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            444444444433 11122222222333345566777776662 3333222223333344455566666666666665555


Q ss_pred             ccC
Q 020976          247 EVK  249 (319)
Q Consensus       247 ~~~  249 (319)
                      ...
T Consensus       253 l~k  255 (932)
T KOG2053|consen  253 LEK  255 (932)
T ss_pred             HHh
Confidence            544

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.37  E-value=9.5e-06  Score=52.16  Aligned_cols=76  Identities=18%  Similarity=0.367  Sum_probs=42.0

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGF-VPELVTYNILIKGLCKAG--------RLRTARWILKELGDSGHAPNAITYTTI   86 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l   86 (319)
                      .|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..        +.-..+.+|+.|...+++|+..+|+.+
T Consensus        31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv  110 (120)
T PF08579_consen   31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV  110 (120)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            34445555666666666666666666 566666666666555432        123344555555555555555555555


Q ss_pred             HHHHH
Q 020976           87 MKCCF   91 (319)
Q Consensus        87 ~~~~~   91 (319)
                      +..+.
T Consensus       111 l~~Ll  115 (120)
T PF08579_consen  111 LGSLL  115 (120)
T ss_pred             HHHHH
Confidence            55443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.37  E-value=0.00017  Score=55.28  Aligned_cols=177  Identities=14%  Similarity=0.085  Sum_probs=105.8

Q ss_pred             HHHHHHHcCchHHHHHHHHHHHhCCCccChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhc
Q 020976          121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY---NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK  197 (319)
Q Consensus       121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  197 (319)
                      ....+...|++++|...|+++...- +-+....   -.++.++.+.+++++|...+++..+..+......+...+.+.+.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence            3444556777888888887777642 1122221   34556777788888888888887766443333334344433321


Q ss_pred             --c---------------CCh---hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHH
Q 020976          198 --A---------------GNI---KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSM  257 (319)
Q Consensus       198 --~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l  257 (319)
                        .               .+.   ..|...|+.+++.               |=...-..+|...+..+...-...--.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~la~~e~~i  181 (243)
T PRK10866        117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDRLAKYELSV  181 (243)
T ss_pred             hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence              1               111   2333444444433               2223334455444444433322222255


Q ss_pred             HHHHHccCChhHHHHHHHHHHHc--CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          258 VHNLCKAKRLPSASKLLLSCLKS--GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       258 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      ...|.+.|.+..|..-++.+++.  +.+........++.+|.+.|..++|..+...+.
T Consensus       182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            67788899999999999999875  333355677788899999999999998887654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.36  E-value=0.0013  Score=57.70  Aligned_cols=220  Identities=17%  Similarity=0.141  Sum_probs=150.5

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976           56 CKAGRLRTARWILKELGDSGHAPNAITYTTIMKC--CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE  133 (319)
Q Consensus        56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  133 (319)
                      ...+++.+|.+-..++.+.  .|+.. |...+.+  ..+.|..++|..+++.....+.. |..|...+-.+|...++.++
T Consensus        20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence            4568899999999998875  34543 3333333  56889999999999988877634 88899999999999999999


Q ss_pred             HHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC-C---------hhH
Q 020976          134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-N---------IKG  203 (319)
Q Consensus       134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~  203 (319)
                      |..+|++....  .|+......+..+|.+.+.+.+-.+.--++-+. .+-....|.++++.....- .         ..-
T Consensus        96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L  172 (932)
T KOG2053|consen   96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL  172 (932)
T ss_pred             HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence            99999999885  467777788888898888876654444444432 2335566666666654332 1         123


Q ss_pred             HHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHh-hcc----CCchhHHHHHHHHHccCChhHHHHHHHHH
Q 020976          204 ARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFES-MEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSC  277 (319)
Q Consensus       204 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  277 (319)
                      |.+.++.+.+.+ ---+..=.......+...|++++|.+++.. ..+    .+...-+.-+..+...+++.+..++..++
T Consensus       173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L  252 (932)
T KOG2053|consen  173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL  252 (932)
T ss_pred             HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            555566666543 111112222233445678899999999842 222    24555556677788889999999999888


Q ss_pred             HHcCC
Q 020976          278 LKSGV  282 (319)
Q Consensus       278 ~~~~~  282 (319)
                      ...|.
T Consensus       253 l~k~~  257 (932)
T KOG2053|consen  253 LEKGN  257 (932)
T ss_pred             HHhCC
Confidence            88754

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.35  E-value=1e-05  Score=66.09  Aligned_cols=119  Identities=13%  Similarity=0.116  Sum_probs=64.2

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKH--GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI   86 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   86 (319)
                      +......+++.+....+++.+..++-+....  ....-..|..++++.|.+.|..+.++.+++.=...|+-||..++|.|
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            4444455555555555555565555555443  11111233345666666666666666666665556666666666666


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK  127 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  127 (319)
                      |..+.+.|++..|.++...|...+...++.++..-+.+|.+
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence            66666666666666666555555444444444444444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.33  E-value=3.9e-05  Score=51.82  Aligned_cols=98  Identities=8%  Similarity=-0.075  Sum_probs=54.1

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CChhhHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PNAITYTTIM   87 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~   87 (319)
                      ++..+...+.+.|++++|.+.|+.+.+....  .....+..+..++.+.|+++.|.+.|+.+......  .....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            4455555666666666666666666543211  11234455666666666666666666666543211  1133455555


Q ss_pred             HHHHhcCChhHHHHHHHHHHhC
Q 020976           88 KCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      .++...|++++|.+.++++.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            5566666666666666666655

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=0.0004  Score=57.16  Aligned_cols=225  Identities=14%  Similarity=0.066  Sum_probs=137.5

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH----
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK----   88 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----   88 (319)
                      ...+....-+..++..|++-++...+..  -+..-++....+|...|.+.+.....+...+.|-. ...-|+.+-.    
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            3455666667777888888887777754  35556667777788888777777766666554433 2333333333    


Q ss_pred             ---HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976           89 ---CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK  165 (319)
Q Consensus        89 ---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (319)
                         ++.+.++++.++..|.+.......|+         ...+....+++++..+...-.+... ..-...-...+.+.|+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd  373 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD  373 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence               44445667777777777554322221         2223334444444444433322111 1112222566777888


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976          166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES  245 (319)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  245 (319)
                      +..|+..|.+++...+. |...|....-+|.+.|.+..|..-.+...+.+ ++....|..=..++....+++.|.+.|.+
T Consensus       374 y~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e  451 (539)
T KOG0548|consen  374 YPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE  451 (539)
T ss_pred             HHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888877643 67778888888888888888877777766653 34445555555556666678888888887


Q ss_pred             hccCCch
Q 020976          246 MEVKDSF  252 (319)
Q Consensus       246 ~~~~~~~  252 (319)
                      ....|+.
T Consensus       452 ale~dp~  458 (539)
T KOG0548|consen  452 ALELDPS  458 (539)
T ss_pred             HHhcCch
Confidence            7766543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.25  E-value=0.00016  Score=57.02  Aligned_cols=204  Identities=17%  Similarity=0.199  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCC--c
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDS----GHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKR----KGYTFD--G  115 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~  115 (319)
                      .|......|...+++++|.+.|.+....    +-+. -...|.....++.+. ++++|.+.+++...    .| .++  .
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA  114 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA  114 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence            3444555555566666666666555321    1000 112233333333332 55555555555432    22 111  1


Q ss_pred             ccHHHHHHHHHHc-CchHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----Cc
Q 020976          116 FGYCTVIAAFVKI-GRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-----CD  184 (319)
Q Consensus       116 ~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~  184 (319)
                      ..+..+...|... |+++.|.+.|++..+.    +.+ .-..++..+...+.+.|++++|.++|++.......     ++
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            2333444445454 6666666666655432    110 01233455556666666677776666666543221     11


Q ss_pred             HH-hHHHHHHHHhccCChhHHHHHHHHHHhcC--CCCC--hhhHHHHHHHHHh--cCCHHHHHHHHHhhccCCch
Q 020976          185 KY-THTILIDGLCKAGNIKGARLHLEYMNKIG--FDSN--LEAYNCIVDRLGK--DGKIDHAINVFESMEVKDSF  252 (319)
Q Consensus       185 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~  252 (319)
                      .. .|...+-++...||...|...+++.....  +..+  ......|+.++-.  ...++.+..-|+.+...|+.
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w  269 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW  269 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence            11 22223334445566666666666665431  1111  2333444444432  22355555555555444433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.24  E-value=7.9e-05  Score=50.29  Aligned_cols=98  Identities=12%  Similarity=0.031  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCcccHHHHH
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDSGHA--PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCTVI  122 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll  122 (319)
                      ++..+...+.+.|++++|.+.|+.+......  .....+..+..++.+.|+++.|.+.++.+....-  +.....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3344445555556666666666555543211  0123444455555555666666666655554310  11123344444


Q ss_pred             HHHHHcCchHHHHHHHHHHHhC
Q 020976          123 AAFVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus       123 ~~~~~~~~~~~a~~~~~~~~~~  144 (319)
                      .++.+.|+.++|...++++...
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            5555555555555555555554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.23  E-value=0.00016  Score=50.21  Aligned_cols=98  Identities=9%  Similarity=0.030  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA  124 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  124 (319)
                      ....-.+...+...|++++|.++|+-+....+. +..-|-.|.-++-..|++++|+..|......+ +-|+..+-.+..+
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c  112 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence            344445555666777888888887777765433 56666677777777777888888777777765 4567777777777


Q ss_pred             HHHcCchHHHHHHHHHHHhC
Q 020976          125 FVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus       125 ~~~~~~~~~a~~~~~~~~~~  144 (319)
                      +...|+.+.|.+.|+..+..
T Consensus       113 ~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        113 YLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            77777777777777766653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.22  E-value=4.4e-05  Score=48.94  Aligned_cols=94  Identities=18%  Similarity=0.096  Sum_probs=52.7

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR   92 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (319)
                      +..+...+...|++++|...++...+... .+...+..+...+...+++++|.+.++........ +..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence            44455555666666666666666655422 23345555566666666666666666665554322 33455555555666


Q ss_pred             cCChhHHHHHHHHHHh
Q 020976           93 NRKYKLGLEILSAMKR  108 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~  108 (319)
                      .|+++.|...+....+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            6666666666655543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.21  E-value=3.5e-05  Score=60.52  Aligned_cols=142  Identities=17%  Similarity=0.078  Sum_probs=100.2

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHH-HhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 020976          151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG-LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR  229 (319)
Q Consensus       151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  229 (319)
                      .+|..++....+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..+|+...+. ++.+...+...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            4678888888888889999999999885432 244445444444 33356777799999998876 46677888888888


Q ss_pred             HHhcCCHHHHHHHHHhhccC------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 020976          230 LGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL  296 (319)
Q Consensus       230 ~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  296 (319)
                      +...|+.+.|+.+|++....      ....|...+..=.+.|+.+.+.++.+++.+.  .|+...+..+++-|
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry  150 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY  150 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence            88999999999999987755      2347888888888889999888888888775  34444444444433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.21  E-value=4.4e-05  Score=48.92  Aligned_cols=20  Identities=15%  Similarity=-0.067  Sum_probs=8.0

Q ss_pred             HHHHhcCChhHHHHHHHHHh
Q 020976           53 KGLCKAGRLRTARWILKELG   72 (319)
Q Consensus        53 ~~~~~~~~~~~a~~~~~~~~   72 (319)
                      ..+...|++++|...+++..
T Consensus         8 ~~~~~~~~~~~A~~~~~~~~   27 (100)
T cd00189           8 NLYYKLGDYDEALEYYEKAL   27 (100)
T ss_pred             HHHHHHhcHHHHHHHHHHHH
Confidence            33333444444444444433

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.21  E-value=2.9e-05  Score=50.02  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=13.5

Q ss_pred             CChhHHHHHHHHHHhCCC-CCCcccHHHHHHHH
Q 020976           94 RKYKLGLEILSAMKRKGY-TFDGFGYCTVIAAF  125 (319)
Q Consensus        94 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~  125 (319)
                      +++.....+|+.+++.|+ .|+..+|+.++.+.
T Consensus        39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si   71 (120)
T PF08579_consen   39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSI   71 (120)
T ss_pred             cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence            444444444444444444 34444444444433

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.20  E-value=3.6e-06  Score=52.92  Aligned_cols=81  Identities=16%  Similarity=0.214  Sum_probs=45.1

Q ss_pred             cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 020976           23 NRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE  101 (319)
Q Consensus        23 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  101 (319)
                      .|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..++++ ...+. .+....-.+..++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            46667777777776664331 2334444466667777777777777766 22111 123344444666667777777776


Q ss_pred             HHHH
Q 020976          102 ILSA  105 (319)
Q Consensus       102 ~~~~  105 (319)
                      ++++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.19  E-value=2.7e-06  Score=41.91  Aligned_cols=29  Identities=31%  Similarity=0.700  Sum_probs=21.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHG   40 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   40 (319)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            57777777777777777777777777665

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.18  E-value=2.2e-06  Score=42.24  Aligned_cols=30  Identities=20%  Similarity=0.291  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976          288 AQKAVVDGLRHSGCRREAKKIQSKIRMAKI  317 (319)
Q Consensus       288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i  317 (319)
                      +|+.++++|++.|++++|.++|++|++.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            567777777777777777777777776654

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.18  E-value=0.00018  Score=52.14  Aligned_cols=83  Identities=16%  Similarity=-0.015  Sum_probs=38.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL  230 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  230 (319)
                      +..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..++
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~  116 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            44444444555555555555555543322211  2344445555555555555555555555432 22233344444444


Q ss_pred             HhcCCH
Q 020976          231 GKDGKI  236 (319)
Q Consensus       231 ~~~~~~  236 (319)
                      ...|+.
T Consensus       117 ~~~g~~  122 (172)
T PRK02603        117 HKRGEK  122 (172)
T ss_pred             HHcCCh
Confidence            444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.17  E-value=0.0014  Score=50.36  Aligned_cols=183  Identities=11%  Similarity=0.046  Sum_probs=106.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT---YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT  120 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  120 (319)
                      +...+-.....+...|++++|.+.|+++....+.+ ...   .-.+..++.+.+++++|...+++..+....-....+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            34444445555677899999999999998854332 222   24566788899999999999999887632212223333


Q ss_pred             HHHHHHH--c---------------Cch---HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 020976          121 VIAAFVK--I---------------GRL---KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG  180 (319)
Q Consensus       121 ll~~~~~--~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  180 (319)
                      .+.+.+.  .               .|.   .+|+..|+++++.  -|++             .-..+|...+..+... 
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~-  173 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR-  173 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence            3433321  1               112   3455666666654  2332             2233444433333321 


Q ss_pred             CCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976          181 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI--GFDSNLEAYNCIVDRLGKDGKIDHAINVFESM  246 (319)
Q Consensus       181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  246 (319)
                        .-. .-..+.+.|.+.|.+..|..-++.+.+.  +.+........++.+|...|..++|......+
T Consensus       174 --la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        174 --LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             --HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence              001 1124556677777777777777777765  33344566667777788888888777766543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.14  E-value=0.00012  Score=50.85  Aligned_cols=99  Identities=12%  Similarity=-0.005  Sum_probs=84.8

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC   89 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   89 (319)
                      ....-.+...+...|++++|.++|+.+....+. +..-|-.|..++-..|++++|+..|.......+. |+..+-.+..+
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c  112 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence            344556677788899999999999999886544 6777888889999999999999999999987654 78899999999


Q ss_pred             HHhcCChhHHHHHHHHHHhCC
Q 020976           90 CFRNRKYKLGLEILSAMKRKG  110 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~  110 (319)
                      +...|+.+.|.+.|+......
T Consensus       113 ~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        113 YLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHcCCHHHHHHHHHHHHHHh
Confidence            999999999999999887653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.14  E-value=0.0012  Score=58.66  Aligned_cols=215  Identities=14%  Similarity=0.123  Sum_probs=145.3

Q ss_pred             ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 020976           95 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD  174 (319)
Q Consensus        95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  174 (319)
                      +...++..|-+..+.. +.-...|..|...|....+...|.+.|+...+.. ..+..........|++..+++.|..+.-
T Consensus       473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            3556666665555543 2234578889999988889999999999988863 3466778888999999999999998843


Q ss_pred             HHHHcCC-CCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchh
Q 020976          175 EMEKQGF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT  253 (319)
Q Consensus       175 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  253 (319)
                      ..-+... ..-...|....-.|.+.++..++..-|+...+.. |.|...|..+..+|...|++..|.++|.++...+|..
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence            3322211 1111223334555678888999999998888765 6678999999999999999999999998887665543


Q ss_pred             -HHHH--HHHHHccCChhHHHHHHHHHHHc------CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976          254 -YSSM--VHNLCKAKRLPSASKLLLSCLKS------GVRILKSAQKAVVDGLRHSGCRREAKKIQSKI  312 (319)
Q Consensus       254 -~~~l--~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (319)
                       |...  ....+..|.+.+|+..+......      +..--..++......+...|-..+|..++++-
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks  697 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS  697 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence             3322  22345678899998888776543      11112234444444445556556666665553

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.13  E-value=0.00011  Score=57.72  Aligned_cols=130  Identities=8%  Similarity=0.004  Sum_probs=71.9

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG-LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC   89 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   89 (319)
                      .+|..+|...-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|.++|+...+. ...+...|...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            3566666666666667777777777664321 133344333333 22245555577777666654 33356666666666


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976           90 CFRNRKYKLGLEILSAMKRKGYTFDG---FGYCTVIAAFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~  143 (319)
                      +...++.+.|..+|++.... ++++.   ..|...+..=.+.|+.+.+.++.+++.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66667777777777666644 22222   3556666665666666666666666555

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.13  E-value=4.7e-06  Score=52.36  Aligned_cols=80  Identities=15%  Similarity=0.158  Sum_probs=37.1

Q ss_pred             CChhHHHHHHHHHHhCCCC-CCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 020976           94 RKYKLGLEILSAMKRKGYT-FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL  172 (319)
Q Consensus        94 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  172 (319)
                      |+++.|+.+++++.+.... ++...+-.+..++.+.|++++|..+++. ...+ +.+......+..++.+.|++++|+++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4555566666555554210 1223333355555566666666666655 2111 11222333345555666666666655


Q ss_pred             HHH
Q 020976          173 LDE  175 (319)
Q Consensus       173 ~~~  175 (319)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.12  E-value=0.00017  Score=58.79  Aligned_cols=93  Identities=11%  Similarity=-0.002  Sum_probs=78.1

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK   95 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   95 (319)
                      -...+...|++++|++.|++..+.... +...|..+..+|...|++++|...++++..... .+...|..+..+|...|+
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence            345677789999999999999887543 678888888999999999999999999988643 267788888899999999


Q ss_pred             hhHHHHHHHHHHhCC
Q 020976           96 YKLGLEILSAMKRKG  110 (319)
Q Consensus        96 ~~~a~~~~~~~~~~~  110 (319)
                      +++|+..|++..+..
T Consensus        86 ~~eA~~~~~~al~l~  100 (356)
T PLN03088         86 YQTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999988764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.11  E-value=0.00028  Score=51.17  Aligned_cols=115  Identities=15%  Similarity=0.073  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI  122 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  122 (319)
                      ...+..+...+...|++++|...|++.......+.  ...+..+..++.+.|++++|...+.+..+.. +.+...+..+.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            33455555556666666666666666654322221  2455555566666666666666666655542 22344444445


Q ss_pred             HHHHHcCc--------------hHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC
Q 020976          123 AAFVKIGR--------------LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG  164 (319)
Q Consensus       123 ~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (319)
                      ..+...|+              +++|.+++++....+  |+  .+..++..+...|
T Consensus       114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~--~~~~~~~~~~~~~  165 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PN--NYIEAQNWLKTTG  165 (172)
T ss_pred             HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--ch--hHHHHHHHHHhcC
Confidence            55555444              567777887776642  22  2445555554444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.11  E-value=0.00022  Score=51.56  Aligned_cols=62  Identities=13%  Similarity=-0.138  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKI  214 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  214 (319)
                      +..+...+...|++++|...|++.......|  ...++..+...+...|++++|...++.....
T Consensus        38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4444444555555555555555554332221  1224445555555555555555555555543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.07  E-value=0.0044  Score=51.51  Aligned_cols=174  Identities=11%  Similarity=0.040  Sum_probs=108.7

Q ss_pred             hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHcCchHHHHHHHH
Q 020976           61 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYME  139 (319)
Q Consensus        61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~  139 (319)
                      .+.....++++...-..--.-+|..+++...+..-+..|..+|.+..+.+..+ +....++++..++ .+|..-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            55666666666653222223456677777777777788888888888776555 5556666666555 467778888887


Q ss_pred             HHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHhc---
Q 020976          140 QMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKI---  214 (319)
Q Consensus       140 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  214 (319)
                      --... ...++.--...+..+...++-..+..+|+.....++.|+  ...|..++..=..-|+...+.++-+++...   
T Consensus       426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~  504 (656)
T KOG1914|consen  426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA  504 (656)
T ss_pred             HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence            65554 222333334566677777888888888888877755444  357888888777788888777777665543   


Q ss_pred             CCCCChhhHHHHHHHHHhcCCH
Q 020976          215 GFDSNLEAYNCIVDRLGKDGKI  236 (319)
Q Consensus       215 ~~~~~~~~~~~l~~~~~~~~~~  236 (319)
                      ...+....-..+++.|.-.+..
T Consensus       505 ~qe~~~~~~~~~v~RY~~~d~~  526 (656)
T KOG1914|consen  505 DQEYEGNETALFVDRYGILDLY  526 (656)
T ss_pred             hhcCCCChHHHHHHHHhhcccc
Confidence            0122223334445555544443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.07  E-value=0.00028  Score=50.97  Aligned_cols=114  Identities=13%  Similarity=-0.021  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHH
Q 020976           26 TDNALRMFRGLQ-KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP--NAITYTTIMKCCFRNRKYKLGLEI  102 (319)
Q Consensus        26 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~  102 (319)
                      +..+...+..+. ..+..-....|..+...+...|++++|...|++.......+  ...++..+..++...|++++|+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            334444444442 22222235556667777777788888888888776543222  234677777778888888888888


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHH-------HcCchHHHHHHHHH
Q 020976          103 LSAMKRKGYTFDGFGYCTVIAAFV-------KIGRLKEATDYMEQ  140 (319)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~~~a~~~~~~  140 (319)
                      +++..... +....++..+...+.       ..|+++.|+..+++
T Consensus        95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033         95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            87777653 333445555555555       66777655555544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.07  E-value=0.00021  Score=58.20  Aligned_cols=92  Identities=12%  Similarity=-0.003  Sum_probs=79.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCc
Q 020976           51 LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR  130 (319)
Q Consensus        51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  130 (319)
                      -...+...|+++.|.+.|++..+.... +...|..+..++...|++++|+..++++.+.. +.+...|..+..++...|+
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            345566889999999999999986543 67888889999999999999999999998875 5567788888999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 020976          131 LKEATDYMEQMVTD  144 (319)
Q Consensus       131 ~~~a~~~~~~~~~~  144 (319)
                      +++|+..|++....
T Consensus        86 ~~eA~~~~~~al~l   99 (356)
T PLN03088         86 YQTAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999885

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.06  E-value=0.0036  Score=49.95  Aligned_cols=109  Identities=18%  Similarity=0.127  Sum_probs=74.5

Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCC
Q 020976          187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKR  266 (319)
Q Consensus       187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~  266 (319)
                      +.+.-+.-+...|+...|.++-.+..    -|+...|...+.+++..++|++..++...  .++|.-|..++.+|...|+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence            44455566666777777776655442    36777788888888888888877776553  4577888888888888888


Q ss_pred             hhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976          267 LPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK  311 (319)
Q Consensus       267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  311 (319)
                      ..+|..+..+     ++     +..-+..|.++|++.+|.+..-+
T Consensus       253 ~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  253 KKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence            8888777765     12     13445666777777777655433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.01  E-value=0.00075  Score=59.87  Aligned_cols=182  Identities=11%  Similarity=0.024  Sum_probs=123.4

Q ss_pred             hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 020976           26 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA  105 (319)
Q Consensus        26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  105 (319)
                      ...|+..|-+..+..+. =...|..|...|+...+...|.+.|++..+.... +...+......|++..+++.|..+.-.
T Consensus       474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            55555555554443221 2457788888888877888899999888875433 677888888899999999999888433


Q ss_pred             HHhCC-CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 020976          106 MKRKG-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD  184 (319)
Q Consensus       106 ~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  184 (319)
                      .-+.. ...-...|....-.|...++..++...|+...... |.|...|..+.++|.+.|++..|.++|.+....  .|+
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~  628 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL  628 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence            33221 01112223334445667788888888888887763 457788888999999999999999999888764  333


Q ss_pred             HHhHHHH--HHHHhccCChhHHHHHHHHHHh
Q 020976          185 KYTHTIL--IDGLCKAGNIKGARLHLEYMNK  213 (319)
Q Consensus       185 ~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~  213 (319)
                      . +|...  ...-+..|.+.++...+..+..
T Consensus       629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  629 S-KYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            2 22222  2234567888888888877654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.01  E-value=0.00097  Score=49.76  Aligned_cols=169  Identities=14%  Similarity=0.110  Sum_probs=85.7

Q ss_pred             HHHHHcCchHHHHHHHHHHHhCC--CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc--
Q 020976          123 AAFVKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA--  198 (319)
Q Consensus       123 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  198 (319)
                      ..+...|++.+|...|+.+...-  -+-.....-.++.++.+.|+++.|...++...+.-+......+...+.+.+..  
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence            34455666666666666666541  11112233445566666667777766666666543322222222222222111  


Q ss_pred             -----------CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCCh
Q 020976          199 -----------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRL  267 (319)
Q Consensus       199 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~  267 (319)
                                 +...+|...|+               .++.-|=......+|...+..+...-...--.+...|.+.|.+
T Consensus        93 ~~~~~~~~~D~~~~~~A~~~~~---------------~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y  157 (203)
T PF13525_consen   93 IPGILRSDRDQTSTRKAIEEFE---------------ELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY  157 (203)
T ss_dssp             HHHHH-TT---HHHHHHHHHHH---------------HHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred             CccchhcccChHHHHHHHHHHH---------------HHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence                       11223333333               3334444444455555555544433222223356778899999


Q ss_pred             hHHHHHHHHHHHc--CCccCHHHHHHHHHHHHhcCCHHHHH
Q 020976          268 PSASKLLLSCLKS--GVRILKSAQKAVVDGLRHSGCRREAK  306 (319)
Q Consensus       268 ~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~  306 (319)
                      ..|..-++.+++.  +.+........++.+|.+.|..+.|.
T Consensus       158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            9999999998876  11112345677888999999888554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.99  E-value=0.00089  Score=57.19  Aligned_cols=139  Identities=12%  Similarity=0.050  Sum_probs=93.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhc--------CChhHHHHHHH
Q 020976           39 HGFVPELVTYNILIKGLCKAG-----RLRTARWILKELGDSGHAPN-AITYTTIMKCCFRN--------RKYKLGLEILS  104 (319)
Q Consensus        39 ~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~  104 (319)
                      ...+.|...|...+++.....     +.+.|..+|++..+.  .|+ ...|..+..++...        .++..+.+...
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            334567788877777654432     266888888888875  343 44454443333221        12334444444


Q ss_pred             HHHhC-CCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 020976          105 AMKRK-GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF  181 (319)
Q Consensus       105 ~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  181 (319)
                      +.... ..+.++..|..+.......|++++|...+++....+  |+...|..+...+...|+.++|.+.+++....++
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            43332 124455677777666777899999999999998864  5788899999999999999999999999887643

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.94  E-value=0.0009  Score=44.79  Aligned_cols=56  Identities=20%  Similarity=0.060  Sum_probs=24.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976          158 NLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNK  213 (319)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  213 (319)
                      .++-..|+.++|+.+|++....|+..+  ...+..+...+...|++++|..+++....
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444455555555555444443322  12333344444444555555555544443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.92  E-value=0.0057  Score=52.07  Aligned_cols=249  Identities=14%  Similarity=0.114  Sum_probs=130.9

Q ss_pred             CCcchHhHHHHHHHHhhcCChHHHHHH---------HHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHhhC
Q 020976            6 LTPCTATFNIMLNGLCKNRYTDNALRM---------FRGLQKHGFVPELVTYNILIKGLCKAGRLR--TARWILKELGDS   74 (319)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~   74 (319)
                      +.|....+.+-+..|...|.+++|.++         |+.+-..  ..+.-.++..=.+|.+.++..  +...-+++++++
T Consensus       552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r  629 (1081)
T KOG1538|consen  552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKR  629 (1081)
T ss_pred             eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence            456666677777788888888888754         2222111  112334455555666655533  334445666777


Q ss_pred             CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH------------HcCchHHHHHHHHHHH
Q 020976           75 GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV------------KIGRLKEATDYMEQMV  142 (319)
Q Consensus        75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~------------~~~~~~~a~~~~~~~~  142 (319)
                      |-.|+...   +...++-.|.+.+|.++|.+-   |..      +..+..|.            ..|+.++-..+.++-.
T Consensus       630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA  697 (1081)
T KOG1538|consen  630 GETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA  697 (1081)
T ss_pred             CCCchHHH---HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            77777654   334466678888888877643   211      12233333            3333333333322211


Q ss_pred             hCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH------HHHcCCC---CcHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976          143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE------MEKQGFE---CDKYTHTILIDGLCKAGNIKGARLHLEYMNK  213 (319)
Q Consensus       143 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  213 (319)
                      +.  .-+..--.+....+...|+.++|..+.-+      +.+-+.+   .+..+...+...+-+...+..|-++|..|-.
T Consensus       698 ~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD  775 (1081)
T KOG1538|consen  698 DW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD  775 (1081)
T ss_pred             HH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc
Confidence            10  01111112344555667777777655421      1111111   1333444455555556666777777766543


Q ss_pred             cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHH-------------HHHHHccCChhHHHHHHHHHHH
Q 020976          214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSM-------------VHNLCKAKRLPSASKLLLSCLK  279 (319)
Q Consensus       214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~  279 (319)
                               ..++++.....+++++|..+-++.++--+.+|...             -.+|.+.|+..+|..+++++-.
T Consensus       776 ---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  776 ---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             ---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence                     24567777788888888888887765533333333             3345555555555555555543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.92  E-value=0.00065  Score=53.60  Aligned_cols=161  Identities=15%  Similarity=0.114  Sum_probs=76.9

Q ss_pred             cHHHHHHHHHHcCchHHHHHHHHHHHhC----CCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCc--HH
Q 020976          117 GYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GFECD--KY  186 (319)
Q Consensus       117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~  186 (319)
                      .|......|...+++++|...|.+....    +-+. -...|.....+|.+. ++++|.+.+++..+.   .-.|+  ..
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~  115 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK  115 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            3555555666667777777777665432    1111 112333444444333 667777666665431   11222  22


Q ss_pred             hHHHHHHHHhcc-CChhHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhccC----Cc----
Q 020976          187 THTILIDGLCKA-GNIKGARLHLEYMNKI----GFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK----DS----  251 (319)
Q Consensus       187 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~----  251 (319)
                      .+..+...|... |+++.|...|++..+.    + .+.  ...+..+...+.+.|++++|.++|+++...    +.    
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            455555666665 6666666666665443    2 111  233445555566666666666666654322    00    


Q ss_pred             --hhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976          252 --FTYSSMVHNLCKAKRLPSASKLLLSCLK  279 (319)
Q Consensus       252 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~  279 (319)
                        ..+-..+-++...|++..|...+++...
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~  224 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCS  224 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence              1122223344445666666666665543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.91  E-value=0.0022  Score=54.90  Aligned_cols=146  Identities=10%  Similarity=0.029  Sum_probs=102.9

Q ss_pred             CCCCCChhhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc--------CchHHHHHHHHH
Q 020976           74 SGHAPNAITYTTIMKCCFRNR-----KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI--------GRLKEATDYMEQ  140 (319)
Q Consensus        74 ~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~  140 (319)
                      ...+.+...|..++++.....     +...|..+|++..+.. +-....+..+..++...        .+...+.+..++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            345668889998888755432     3778999999999874 33344555544444322        123344555554


Q ss_pred             HHhC-CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC
Q 020976          141 MVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN  219 (319)
Q Consensus       141 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  219 (319)
                      .... ..+.+...|..+.-.....|++++|...+++....+  |+...|..+...+...|+.++|...+++....  .|.
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~  485 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG  485 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence            4332 233455778877777778899999999999999874  67889999999999999999999999998875  455


Q ss_pred             hhhHH
Q 020976          220 LEAYN  224 (319)
Q Consensus       220 ~~~~~  224 (319)
                      ..+|.
T Consensus       486 ~pt~~  490 (517)
T PRK10153        486 ENTLY  490 (517)
T ss_pred             CchHH
Confidence            55543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.89  E-value=0.00027  Score=51.55  Aligned_cols=87  Identities=14%  Similarity=0.208  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----------------CChhHHHHH
Q 020976           44 ELVTYNILIKGLCKA-----GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN----------------RKYKLGLEI  102 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~  102 (319)
                      +-.+|..++..|.+.     |..+-....+..|.+-|+.-|..+|+.|++.+=+.                .+-+-|+++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            555666666655543     44555556666666666666666676666654331                134567788


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHHcCc
Q 020976          103 LSAMKRKGYTFDGFGYCTVIAAFVKIGR  130 (319)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~  130 (319)
                      +++|...|+-||..++..++..+.+.+.
T Consensus       126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  126 LEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            8888888888888888888887776554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.88  E-value=7e-05  Score=44.79  Aligned_cols=53  Identities=17%  Similarity=0.124  Sum_probs=36.5

Q ss_pred             hhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976           21 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS   74 (319)
Q Consensus        21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   74 (319)
                      .+.|++++|+++|+.+.+..+. +...+..+..+|.+.|++++|.++++.+...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4567777777777777665333 6666667777777777777777777777664

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.87  E-value=0.0001  Score=43.57  Aligned_cols=61  Identities=15%  Similarity=-0.021  Sum_probs=44.0

Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 020976          257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS  318 (319)
Q Consensus       257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i~  318 (319)
                      +...+...|++++|.+.|+++++... -+...+..+..++...|++++|..+|+++.+....
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            34567778888888888888877642 26677777788888888888888888877665543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.84  E-value=0.0025  Score=42.71  Aligned_cols=53  Identities=11%  Similarity=0.129  Sum_probs=21.7

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976           91 FRNRKYKLGLEILSAMKRKGYTFD--GFGYCTVIAAFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  143 (319)
                      -..|+.++|+.+|++....|....  ...+..+...+...|++++|+.++++...
T Consensus        12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen   12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444444444444432221  12222333344444444444444444443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.84  E-value=0.00037  Score=55.67  Aligned_cols=269  Identities=14%  Similarity=0.085  Sum_probs=154.1

Q ss_pred             hHhHHHHHH--HHhhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHH--hh--CCCC-C
Q 020976           10 TATFNIMLN--GLCKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKEL--GD--SGHA-P   78 (319)
Q Consensus        10 ~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~~-~   78 (319)
                      ..++...+.  -+++.|+...-+.+|+...+-|.. |.    .+|..|.++|.-.+++++|+++...=  ..  .|-+ -
T Consensus        15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG   93 (639)
T KOG1130|consen   15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG   93 (639)
T ss_pred             hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc
Confidence            334444443  488999999999999999988754 43    45777888888889999998864321  11  1111 0


Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHH----hCCC-CCCcccHHHHHHHHHHcCc--------------------hHH
Q 020976           79 NAITYTTIMKCCFRNRKYKLGLEILSAMK----RKGY-TFDGFGYCTVIAAFVKIGR--------------------LKE  133 (319)
Q Consensus        79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~ll~~~~~~~~--------------------~~~  133 (319)
                      ...+-..|.+.+--.|.+++|+-...+-.    +.|- ......+-.+...|...|.                    ++.
T Consensus        94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~  173 (639)
T KOG1130|consen   94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN  173 (639)
T ss_pred             cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence            12222333344444566666654332211    1110 1122334444555544332                    233


Q ss_pred             HHHHHHHHHh----CCC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CcHHhHHHHHHHHhccCChhH
Q 020976          134 ATDYMEQMVT----DGV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEME----KQGFE-CDKYTHTILIDGLCKAGNIKG  203 (319)
Q Consensus       134 a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~  203 (319)
                      |.++|.+=.+    .|- -.-...|..+...|.-.|+++.|+...+.-.    +.|-. .....+..+..++.-.|+++.
T Consensus       174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~  253 (639)
T KOG1130|consen  174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL  253 (639)
T ss_pred             HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence            4444433221    110 0122345566666666788888876654422    22211 123467777888888888888


Q ss_pred             HHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---------CchhHHHHHHHHHccCChhH
Q 020976          204 ARLHLEYMNKI----GF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPS  269 (319)
Q Consensus       204 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~  269 (319)
                      |.+.|+.....    |- .....+.-++...|.-..+++.|+..+.+-...         ....+.++..+|...|..++
T Consensus       254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k  333 (639)
T KOG1130|consen  254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK  333 (639)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence            88888765432    21 123345566777777777888888777653211         45677888888888888888


Q ss_pred             HHHHHHHHHH
Q 020976          270 ASKLLLSCLK  279 (319)
Q Consensus       270 a~~~~~~~~~  279 (319)
                      |+.+...-++
T Consensus       334 Al~fae~hl~  343 (639)
T KOG1130|consen  334 ALYFAELHLR  343 (639)
T ss_pred             HHHHHHHHHH
Confidence            8877665443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.84  E-value=0.00075  Score=49.37  Aligned_cols=36  Identities=31%  Similarity=0.409  Sum_probs=25.0

Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC
Q 020976          165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN  200 (319)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  200 (319)
                      +-+-|++++++|...|+-||..++..++..+++.+.
T Consensus       118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            345567777777777777777777777777765553

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.82  E-value=0.0052  Score=43.83  Aligned_cols=130  Identities=16%  Similarity=0.081  Sum_probs=80.8

Q ss_pred             ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CChhhHHH
Q 020976          147 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-SNLEAYNC  225 (319)
Q Consensus       147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~  225 (319)
                      .|++.....+..++.+.|+..+|...|.+...--...|......+.++....+++..+...++.+.+.... -++.+...
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            46666666777777778888888877777765445556666777777777777777777777777765310 11233445


Q ss_pred             HHHHHHhcCCHHHHHHHHHhhccC--CchhHHHHHHHHHccCChhHHHHHHHH
Q 020976          226 IVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLS  276 (319)
Q Consensus       226 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~  276 (319)
                      +.+.+...|.+..|+.-|+.....  ++..-......+.++|+.+++..-+..
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            566677777777777777665543  333333334445566655555443333

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.81  E-value=0.00059  Score=54.60  Aligned_cols=262  Identities=16%  Similarity=0.072  Sum_probs=161.8

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCCChh----hHHHHHHHHHhcCChhHHHHHHHHH--Hh--CCCC-CCcccHHHHHH
Q 020976           53 KGLCKAGRLRTARWILKELGDSGHAPNAI----TYTTIMKCCFRNRKYKLGLEILSAM--KR--KGYT-FDGFGYCTVIA  123 (319)
Q Consensus        53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~ll~  123 (319)
                      .-+++.|+......+|+...+.|-. |..    +|..|.++|.-.+++++|+++...=  ..  .|-+ -.......|..
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            3578999999999999999987754 443    4666777888888999998864321  11  1100 11223334455


Q ss_pred             HHHHcCchHHHHHHHHHH----HhCCCc-cChhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 020976          124 AFVKIGRLKEATDYMEQM----VTDGVQ-LDIVSYNTLINLYCKEGK--------------------LEAAYLLLDEMEK  178 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~  178 (319)
                      .+--.|.+++|+.+..+-    .+.|-. .....+..+...|...|+                    ++.|.++|.+=.+
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            555567777766543221    121111 123445556666655442                    2334555543221


Q ss_pred             ----cCC-CCcHHhHHHHHHHHhccCChhHHHHHHHHHH----hcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 020976          179 ----QGF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMN----KIGFD-SNLEAYNCIVDRLGKDGKIDHAINVFESMEV  248 (319)
Q Consensus       179 ----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  248 (319)
                          .|- -.....|..+...|.-.|+++.|+...+.-.    +.|-+ .....+..+..++.-.|+++.|.+.++....
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence                110 1122356666666677789999987765433    22322 2235677888899999999999998876432


Q ss_pred             -------C--CchhHHHHHHHHHccCChhHHHHHHHHHHH----cC-CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          249 -------K--DSFTYSSMVHNLCKAKRLPSASKLLLSCLK----SG-VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       249 -------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                             +  ...+..++...|.-..++++|+.++.+-+.    .+ ..-....+.++..++...|..++|+.+.+.-.+
T Consensus       264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                   2  334555677788888889999988766432    11 122456788899999999999999988876544


Q ss_pred             h
Q 020976          315 A  315 (319)
Q Consensus       315 ~  315 (319)
                      .
T Consensus       344 ~  344 (639)
T KOG1130|consen  344 S  344 (639)
T ss_pred             H
Confidence            3

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.81  E-value=0.00046  Score=52.79  Aligned_cols=100  Identities=16%  Similarity=0.139  Sum_probs=62.2

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHH
Q 020976           55 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA  134 (319)
Q Consensus        55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  134 (319)
                      +.+.+++++|+..|.+.+...+. |++.|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence            44666777777777777665322 56666666667777777777776666666553 33455666666777777777777


Q ss_pred             HHHHHHHHhCCCccChhhHHHHHH
Q 020976          135 TDYMEQMVTDGVQLDIVSYNTLIN  158 (319)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~l~~  158 (319)
                      ++.|++.++.  .|+-.+|-.=+.
T Consensus       169 ~~aykKaLel--dP~Ne~~K~nL~  190 (304)
T KOG0553|consen  169 IEAYKKALEL--DPDNESYKSNLK  190 (304)
T ss_pred             HHHHHhhhcc--CCCcHHHHHHHH
Confidence            7777666663  455555544333

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.76  E-value=0.00018  Score=43.12  Aligned_cols=63  Identities=11%  Similarity=-0.022  Sum_probs=36.4

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhh
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGD   73 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~   73 (319)
                      +.+|..+...+...|++++|+..|++..+.+.. +...|..+..++...| ++++|.+.+++..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            445556666666666666666666666554322 4555555666666666 46666666655544

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.72  E-value=0.00023  Score=42.52  Aligned_cols=50  Identities=24%  Similarity=0.309  Sum_probs=22.2

Q ss_pred             cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      .|++++|+++|+++.... +-+...+..+..+|.+.|++++|..+++.+..
T Consensus         4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444444444444431 22334444444444444445544444444444

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.71  E-value=0.00023  Score=42.12  Aligned_cols=53  Identities=19%  Similarity=0.125  Sum_probs=22.7

Q ss_pred             HHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 020976           19 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG   72 (319)
Q Consensus        19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~   72 (319)
                      .+.+.|++++|++.|+.+.+.... +...+..+..++...|++++|...|+++.
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344444444444444444443211 34444444444444444444444444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.71  E-value=0.011  Score=44.23  Aligned_cols=48  Identities=19%  Similarity=0.158  Sum_probs=23.0

Q ss_pred             HHHHHhccCChhHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHH
Q 020976          191 LIDGLCKAGNIKGARLHLEYMNKI--GFDSNLEAYNCIVDRLGKDGKIDH  238 (319)
Q Consensus       191 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~  238 (319)
                      +...|.+.|.+..|..-++.+++.  +.+........++.+|.+.|..+.
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~  196 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA  196 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence            445556666666666666666554  111112334445555555555553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.00076  Score=51.63  Aligned_cols=116  Identities=17%  Similarity=0.219  Sum_probs=94.0

Q ss_pred             HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976           64 ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus        64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  143 (319)
                      ....-++++..|            .-+.+.+++++|+..|.+.++.. +-|+..|..-..+|.+.|.++.|++-.+..+.
T Consensus        77 ~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~  143 (304)
T KOG0553|consen   77 DKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS  143 (304)
T ss_pred             HHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            455555555544            33678899999999999999885 66888889999999999999999999988887


Q ss_pred             CCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 020976          144 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL  195 (319)
Q Consensus       144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (319)
                      .. +-...+|..|..+|...|++++|.+.|++.++  +.|+-.+|..=+...
T Consensus       144 iD-p~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  144 ID-PHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIA  192 (304)
T ss_pred             cC-hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence            52 23467899999999999999999999999887  477777776666554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.71  E-value=0.00022  Score=42.73  Aligned_cols=66  Identities=9%  Similarity=-0.074  Sum_probs=52.4

Q ss_pred             CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhh
Q 020976          250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG-CRREAKKIQSKIRMAK  316 (319)
Q Consensus       250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~  316 (319)
                      ++..|..+...+...|++++|+..|.+.++... .+...|..+..++.+.| ++++|++.+++..+.+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            356778888888889999999999998888643 26678888888888888 6899998888876543

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.013  Score=44.36  Aligned_cols=136  Identities=12%  Similarity=-0.041  Sum_probs=102.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH-----H
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI-----V  227 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~  227 (319)
                      .+.++.++.-.+.+.-....+.+..+...+.++.....+++.-.+.||.+.|...|++..+..-..+..+.+.+     .
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            45667777778889999999999998877778888899999999999999999999988765334444444333     3


Q ss_pred             HHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHH
Q 020976          228 DRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK  290 (319)
Q Consensus       228 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  290 (319)
                      ..|.-.+++..|...+.++...   ++..-|.-.-+..-.|+...|++.+..|+..  .|.+.+-+
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence            4556678899999999887755   5555565555666678999999999999876  34443333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.0064  Score=46.90  Aligned_cols=101  Identities=10%  Similarity=-0.042  Sum_probs=76.9

Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC---chHHHHHHHHHHHhCCCccChhhHH
Q 020976           78 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG---RLKEATDYMEQMVTDGVQLDIVSYN  154 (319)
Q Consensus        78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~  154 (319)
                      -|...|-.|...|...|+++.|...|.+..+.. ++++..+..+..++....   ...++..+|+++.... +.++.+..
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~  231 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS  231 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence            378888888888888888888888888888764 556666666666655433   3467888888888763 44677777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 020976          155 TLINLYCKEGKLEAAYLLLDEMEKQG  180 (319)
Q Consensus       155 ~l~~~~~~~~~~~~a~~~~~~~~~~~  180 (319)
                      .+...+...|++.+|...|+.|.+..
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            78888888888888888888888764

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.005  Score=46.46  Aligned_cols=152  Identities=11%  Similarity=0.067  Sum_probs=112.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 020976           24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL  103 (319)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  103 (319)
                      ...+..+++|++=..       ..-+.++..+.-.|.+.-....++++.+...+.++.....+++.-.+.||.+.|...|
T Consensus       163 ~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf  235 (366)
T KOG2796|consen  163 LAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYF  235 (366)
T ss_pred             cchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence            334667777766443       3456677777788889999999999998877778888899999999999999999999


Q ss_pred             HHHHhCCCCCCcccHHHHH-----HHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          104 SAMKRKGYTFDGFGYCTVI-----AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       104 ~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      +...+..-..+..+.+.+.     ..+.-.+++..|...+.++.... +.++..-|.-.-+..-.|+...|++.++.|.+
T Consensus       236 ~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~  314 (366)
T KOG2796|consen  236 QDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ  314 (366)
T ss_pred             HHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9877654455555555544     34555678888888888887763 33555556655566668899999999999998


Q ss_pred             cCCCC
Q 020976          179 QGFEC  183 (319)
Q Consensus       179 ~~~~~  183 (319)
                      ..+.|
T Consensus       315 ~~P~~  319 (366)
T KOG2796|consen  315 QDPRH  319 (366)
T ss_pred             cCCcc
Confidence            74433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.61  E-value=0.0033  Score=48.69  Aligned_cols=88  Identities=8%  Similarity=-0.033  Sum_probs=37.3

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCcccHHHHHHHHHHcCch
Q 020976           56 CKAGRLRTARWILKELGDSGHAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRL  131 (319)
Q Consensus        56 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~  131 (319)
                      .+.|++++|...|+.+....+...  ...+..+..+|...|++++|...|+.+.+..  -+.....+-.+..++...|+.
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~  233 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT  233 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence            334455555555555544321100  1234444444555555555555555554331  011122222233344445555


Q ss_pred             HHHHHHHHHHHh
Q 020976          132 KEATDYMEQMVT  143 (319)
Q Consensus       132 ~~a~~~~~~~~~  143 (319)
                      ++|..+|+.+.+
T Consensus       234 ~~A~~~~~~vi~  245 (263)
T PRK10803        234 AKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0051  Score=47.45  Aligned_cols=128  Identities=10%  Similarity=0.033  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---ChhHHHHH
Q 020976           26 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR---KYKLGLEI  102 (319)
Q Consensus        26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~  102 (319)
                      .+....-++.-.+.++ -|...|-.|...|...|+++.|...|.+..+.. .+++..+..+..++....   +..++..+
T Consensus       138 ~~~l~a~Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         138 MEALIARLETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             HHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            3444444444444444 388999999999999999999999999988753 236666666666655443   46778899


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHH
Q 020976          103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN  158 (319)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  158 (319)
                      ++++...+ +-|..+...|...+...|++.+|...|+.|.+.. +|+ ..+..++.
T Consensus       216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~-~~rr~~ie  268 (287)
T COG4235         216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-PAD-DPRRSLIE  268 (287)
T ss_pred             HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCC-CchHHHHH
Confidence            99998876 5677777788888999999999999999999873 333 33444443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.043  Score=47.74  Aligned_cols=300  Identities=12%  Similarity=0.080  Sum_probs=154.0

Q ss_pred             CCCCCCCcchHhHH-----HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHh
Q 020976            1 MICGDLTPCTATFN-----IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL---RTARWILKELG   72 (319)
Q Consensus         1 M~~~g~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~   72 (319)
                      |.+-|++.+..-|.     .+++-+...+.+..|+++-..+...-.. ....|......+.+..+.   +-+..+-+++.
T Consensus       423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls  501 (829)
T KOG2280|consen  423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS  501 (829)
T ss_pred             ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence            34567777776664     4566777888899999887776543222 256677777777766432   22333333333


Q ss_pred             hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC----
Q 020976           73 DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY----TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----  144 (319)
Q Consensus        73 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----  144 (319)
                      .. . .....|..+.+-....|+++.|..+++.=...+.    -.+..-+...+.-+...|+.+-...++-.+...    
T Consensus       502 ~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s  579 (829)
T KOG2280|consen  502 AK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS  579 (829)
T ss_pred             cc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            22 2 3455677777777788888888877654222210    112233445555666677777666666555432    


Q ss_pred             -------CCccChhhHHHHHHH--------HHhcCCHHHHHHHH--HHHH----HcCCCCcHHhHHHHHHHHhccCCh--
Q 020976          145 -------GVQLDIVSYNTLINL--------YCKEGKLEAAYLLL--DEME----KQGFECDKYTHTILIDGLCKAGNI--  201 (319)
Q Consensus       145 -------~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~--~~~~----~~~~~~~~~~~~~l~~~~~~~~~~--  201 (319)
                             ..+.....|.-+++-        +...++-.++...|  +...    ..+..|+   .......+.+....  
T Consensus       580 ~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~  656 (829)
T KOG2280|consen  580 SLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSF  656 (829)
T ss_pred             HHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhh
Confidence                   011112222222220        01111111111111  1100    0112222   22333333333221  


Q ss_pred             --------hHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHH
Q 020976          202 --------KGARLHLEYMNKI-GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASK  272 (319)
Q Consensus       202 --------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  272 (319)
                              .+-..+.+.+... |......+.+--+.-+...|+..+|.++-.+..-++...|..-+.+++..+++++-.+
T Consensus       657 e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLek  736 (829)
T KOG2280|consen  657 EAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEK  736 (829)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHH
Confidence                    1112222222211 3233344555556666677777777777777777777777777777777777766665


Q ss_pred             HHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976          273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI  312 (319)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (319)
                      +-+...      ++.-|.-.+.+|.+.|+.++|.+++.++
T Consensus       737 fAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv  770 (829)
T KOG2280|consen  737 FAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV  770 (829)
T ss_pred             HHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence            554331      2344555666667777777776665543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.02  Score=46.19  Aligned_cols=83  Identities=16%  Similarity=0.037  Sum_probs=36.1

Q ss_pred             ccCChhHHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHH---HHHHHHccCChhHH
Q 020976          197 KAGNIKGARLHLEYMNKI---GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSS---MVHNLCKAKRLPSA  270 (319)
Q Consensus       197 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a  270 (319)
                      +.|.+..|.+.|.+.+..   +..|+...|.....+..+.|+.++|+.--+.....|+.....   -..++...+++++|
T Consensus       261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A  340 (486)
T KOG0550|consen  261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA  340 (486)
T ss_pred             hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555554433   122233333334444445555555555554444443322111   12233344555555


Q ss_pred             HHHHHHHHH
Q 020976          271 SKLLLSCLK  279 (319)
Q Consensus       271 ~~~~~~~~~  279 (319)
                      .+-+++..+
T Consensus       341 V~d~~~a~q  349 (486)
T KOG0550|consen  341 VEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHh
Confidence            555555443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.55  E-value=0.03  Score=48.41  Aligned_cols=187  Identities=11%  Similarity=0.052  Sum_probs=90.8

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-CCCCC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 020976           43 PELVTYNILIKGLCKAGRLRTARWILKELGD-SGHAP--------NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF  113 (319)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  113 (319)
                      |.+..|..+.......-.++.|...|-+... .|++.        +...-..=+.+  --|.+++|.++|-.+.+++   
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD---  764 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD---  764 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh---
Confidence            5667777777776666677777776665543 22210        00000111111  2366777777766655442   


Q ss_pred             CcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH---------------
Q 020976          114 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME---------------  177 (319)
Q Consensus       114 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------  177 (319)
                            ..+..+.+.||+-.+.++++.-... .-..-...|+.+...+.....|++|.+.|..-.               
T Consensus       765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f  838 (1189)
T KOG2041|consen  765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELF  838 (1189)
T ss_pred             ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhh
Confidence                  2344455555555555444331110 000012334444444444444444444443211               


Q ss_pred             ------HcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976          178 ------KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK  249 (319)
Q Consensus       178 ------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  249 (319)
                            ...++-+....-.+..++.+.|.-++|.+.+-+-   + .|     ...+..|...+++.+|.++-++..-+
T Consensus       839 ~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~~~l~  907 (1189)
T KOG2041|consen  839 GELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQRFQLP  907 (1189)
T ss_pred             hhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhccch
Confidence                  0112234445556666666666666666554322   1 12     22345566667777777777665544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.55  E-value=0.015  Score=41.62  Aligned_cols=132  Identities=16%  Similarity=0.112  Sum_probs=93.0

Q ss_pred             CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHHhHHH
Q 020976          112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHTI  190 (319)
Q Consensus       112 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~  190 (319)
                      .|+...--.|..+....|+..+|...|++...--+..|....-.+.++....+++..|...++++.+... .-++.+...
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            5666666677788888888888888888877654555667777777888888888888888888776532 112334456


Q ss_pred             HHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976          191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES  245 (319)
Q Consensus       191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  245 (319)
                      +.+.+.-.|.+.+|+..|+.....  -|+...-......+.+.|+.+++..-+..
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            677788888888888888887764  46655555556667777876666554443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.031  Score=45.20  Aligned_cols=88  Identities=16%  Similarity=0.011  Sum_probs=53.2

Q ss_pred             HhcCCHHHHHHHHHHHHHc---CCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 020976          161 CKEGKLEAAYLLLDEMEKQ---GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID  237 (319)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  237 (319)
                      .+.|.+..|.+.|.+.+..   +..|+...|.....+..+.|+..+|+.-.+...+.+ +.-...+..-..++...++++
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e  338 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWE  338 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777777653   234455566666666777777777777777666532 111123333344555667777


Q ss_pred             HHHHHHHhhccC
Q 020976          238 HAINVFESMEVK  249 (319)
Q Consensus       238 ~a~~~~~~~~~~  249 (319)
                      +|.+-++.....
T Consensus       339 ~AV~d~~~a~q~  350 (486)
T KOG0550|consen  339 EAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHhh
Confidence            777777765543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.47  E-value=0.038  Score=44.42  Aligned_cols=279  Identities=13%  Similarity=0.049  Sum_probs=173.2

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCChhH
Q 020976           23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGL--CKAGRLRTARWILKELGDSGHAPNAIT--YTTIMKCCFRNRKYKL   98 (319)
Q Consensus        23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~   98 (319)
                      .|+-..|.++-.+.... +..|..-+..++.+-  .-.|+++.|.+-|+.|...   |....  ...|.-...+.|+.+.
T Consensus        97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea  172 (531)
T COG3898          97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA  172 (531)
T ss_pred             cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence            35556666655443322 223444444444433  3468888888888888762   22221  2233333446788888


Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhh--HHHHHHHHH---hcCCHHHHHHH
Q 020976           99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVS--YNTLINLYC---KEGKLEAAYLL  172 (319)
Q Consensus        99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~l~~~~~---~~~~~~~a~~~  172 (319)
                      |..+-+.....- +.-...+...+...+..|+++.|+++++.-... -+.++..-  -..|+.+-.   -..+...|.+.
T Consensus       173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~  251 (531)
T COG3898         173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD  251 (531)
T ss_pred             HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            888777776553 334566778888888889999999988876653 22333321  122222211   12345555555


Q ss_pred             HHHHHHcCCCCcHH-hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH--HH--HHHHhhc
Q 020976          173 LDEMEKQGFECDKY-THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH--AI--NVFESME  247 (319)
Q Consensus       173 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~--~~~~~~~  247 (319)
                      -.+..+  +.||.. .-..-.+++.+.|+..++-.+++.+.+..  |.+.....  ..+.+.|+...  ..  +-+..|.
T Consensus       252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk  325 (531)
T COG3898         252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGDTALDRLKRAKKLESLK  325 (531)
T ss_pred             HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcC
Confidence            444443  455543 23345667889999999999999999874  55444433  33456666322  22  2345566


Q ss_pred             cCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 020976          248 VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR-HSGCRREAKKIQSKIRM  314 (319)
Q Consensus       248 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~  314 (319)
                      ..+..+...+..+-...|++..|..--+...+  ..|....|..+.+.-. ..|+-.+++.++.+-.+
T Consensus       326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            66888888888888899999888877766655  4678888888887654 45999999988876544

>PRK15331 chaperone protein SicA; Provisional

Probab=97.42  E-value=0.016  Score=40.72  Aligned_cols=88  Identities=11%  Similarity=0.041  Sum_probs=52.2

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976           54 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE  133 (319)
Q Consensus        54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  133 (319)
                      -+...|++++|..+|.-+...++. +..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence            344566677777776666654332 45555555556666666666666666555443 2344445555666666666666


Q ss_pred             HHHHHHHHHh
Q 020976          134 ATDYMEQMVT  143 (319)
Q Consensus       134 a~~~~~~~~~  143 (319)
                      |...|+....
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            6666666655

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.41  E-value=0.0047  Score=47.89  Aligned_cols=53  Identities=11%  Similarity=0.040  Sum_probs=23.4

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976          161 CKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNK  213 (319)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  213 (319)
                      .+.|++++|...|+.+.+.-+...  ...+..+...|...|++++|...|+.+.+
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~  208 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK  208 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334555555555555544322110  12334444444445555555555554443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.38  E-value=0.0022  Score=45.13  Aligned_cols=52  Identities=21%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM  141 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  141 (319)
                      .+...|++++|..+.+.+.... |.+...|..+|.++...|+...|.++|+++
T Consensus        71 ~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   71 ALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3334444444444444444432 333444444444444444444444444433

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.38  E-value=0.0016  Score=45.77  Aligned_cols=72  Identities=14%  Similarity=0.107  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCcccH
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-----RKGYTFDGFGY  118 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~  118 (319)
                      .+...++..+...|+++.|.++++.+.... +.+...|..+|.++...|+...|.+.|+++.     +.|+.|++.+-
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            466677777888888888888888888764 3377788888888888888888888888775     34777777553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.37  E-value=0.055  Score=43.95  Aligned_cols=163  Identities=12%  Similarity=-0.024  Sum_probs=91.8

Q ss_pred             ccHHHHHHHHHHcCchHHHHHHHHHHHhCC---CccChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCcHHhHH
Q 020976          116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDG---VQLDIVSYNTLINLYCK---EGKLEAAYLLLDEMEKQGFECDKYTHT  189 (319)
Q Consensus       116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~  189 (319)
                      .+...++-+|....+++...++.+.+...-   +.-....-....-++.+   .|+.++|++++..+......+++.++.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            334455556777788888888888877641   11122222234445555   778888888888866555566777777


Q ss_pred             HHHHHHhcc---------CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH----HHHHHHH---Hhhc-c----
Q 020976          190 ILIDGLCKA---------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI----DHAINVF---ESME-V----  248 (319)
Q Consensus       190 ~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~---~~~~-~----  248 (319)
                      .+.+.|-..         ...++|...|.+.-+.  .|+...-..++..+...|..    .+..++-   ..+. .    
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~  299 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL  299 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence            777665211         1355666666655543  24433322233333333321    1222222   1111 1    


Q ss_pred             -C--CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          249 -K--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       249 -~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                       +  +-.-+.+++.+..-.|+.++|.+..++|.+.
T Consensus       300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence             1  4445667777888888888888888888876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.31  E-value=0.0025  Score=38.60  Aligned_cols=56  Identities=13%  Similarity=-0.010  Sum_probs=34.8

Q ss_pred             HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976           18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS   74 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   74 (319)
                      ..|.+.+++++|+++++.+...++. +...+......+.+.|++++|.+.|+...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3456666666666666666665333 5555666666666666666666666666654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.28  E-value=0.059  Score=42.53  Aligned_cols=163  Identities=17%  Similarity=0.159  Sum_probs=92.7

Q ss_pred             HhhcCChHHHHHHHHHHHhCC--CCCCH------HHHHHHHHHHHhcC-ChhHHHHHHHHHhhC--------CCCCCh--
Q 020976           20 LCKNRYTDNALRMFRGLQKHG--FVPEL------VTYNILIKGLCKAG-RLRTARWILKELGDS--------GHAPNA--   80 (319)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--   80 (319)
                      ..+.|+.+.|..++.+.....  ..|+.      ..|+.-...+ +.+ +++.|..++++..+.        ...|+.  
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            356899999999998886632  22332      1233333333 445 888887777765442        122332  


Q ss_pred             ---hhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHH
Q 020976           81 ---ITYTTIMKCCFRNRKYK---LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN  154 (319)
Q Consensus        81 ---~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  154 (319)
                         .++..++.++...+..+   +|..+++.+.... +-.+..+..-+..+.+.++.+.+.+.+.+|... +......+.
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~  159 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFD  159 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHH
Confidence               34556667777666543   4555555554432 333455556666666678888888888888876 222334455


Q ss_pred             HHHHHHHh--cCCHHHHHHHHHHHHHcCCCCcH
Q 020976          155 TLINLYCK--EGKLEAAYLLLDEMEKQGFECDK  185 (319)
Q Consensus       155 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~  185 (319)
                      .++..+..  ......+...++.+....+.|+.
T Consensus       160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence            55555422  12334555666666544444444

It is also involved in sporulation [].

>PRK15331 chaperone protein SicA; Provisional

Probab=97.26  E-value=0.011  Score=41.47  Aligned_cols=94  Identities=12%  Similarity=-0.073  Sum_probs=77.6

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 020976           14 NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN   93 (319)
Q Consensus        14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   93 (319)
                      -.....+-..|++++|..+|.-+.-.+.. +..-+..|..++-..+++++|...|......+.. |+..+-....++...
T Consensus        41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l  118 (165)
T PRK15331         41 YAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM  118 (165)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence            34455566799999999999998876554 6777788888888899999999999988765543 677777888999999


Q ss_pred             CChhHHHHHHHHHHhC
Q 020976           94 RKYKLGLEILSAMKRK  109 (319)
Q Consensus        94 ~~~~~a~~~~~~~~~~  109 (319)
                      |+.+.|...|+.....
T Consensus       119 ~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        119 RKAAKARQCFELVNER  134 (165)
T ss_pred             CCHHHHHHHHHHHHhC
Confidence            9999999999988874

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.25  E-value=0.003  Score=38.25  Aligned_cols=55  Identities=15%  Similarity=0.126  Sum_probs=27.7

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           54 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      .|.+.+++++|.++++.+...++. +...+.....++.+.|++++|.+.++...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            344555555555555555544322 4444444555555555555555555555544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.23  E-value=0.055  Score=41.05  Aligned_cols=70  Identities=19%  Similarity=0.239  Sum_probs=34.6

Q ss_pred             HHcCchHHHHHHHHHHHhCC--CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 020976          126 VKIGRLKEATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL  195 (319)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (319)
                      .+.|++++|.+.|+.+...-  -+-...+--.++.++.+.++++.|...+++..+.-+......|...+.++
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL  116 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL  116 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            34566666666666665431  11122333344555566666666666666666543333333333334333

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.22  E-value=0.0095  Score=40.34  Aligned_cols=49  Identities=12%  Similarity=0.042  Sum_probs=24.9

Q ss_pred             CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCcccHHHHHHH
Q 020976           76 HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAA  124 (319)
Q Consensus        76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~  124 (319)
                      ..|+..+..+++.+|+..+++..|+++++.+.+. +++.+..+|..|+.-
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            3455555555555555555555555555554432 344444455555443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.21  E-value=0.075  Score=45.30  Aligned_cols=160  Identities=18%  Similarity=0.113  Sum_probs=109.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcH-----HhHHHHHHHHhc----cCChhHHHHHHHHHHhcCCCCChhh
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDK-----YTHTILIDGLCK----AGNIKGARLHLEYMNKIGFDSNLEA  222 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  222 (319)
                      +..+++...=.|+-+.+++.+.+..+.+ +.-..     -.|..++..++.    ..+.+.+.+++..+.+.  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            3445556666789999999998876542 22111     234444444443    45678899999999875  466555


Q ss_pred             HHH-HHHHHHhcCCHHHHHHHHHhhccC-------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHH
Q 020976          223 YNC-IVDRLGKDGKIDHAINVFESMEVK-------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD  294 (319)
Q Consensus       223 ~~~-l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  294 (319)
                      |.. -.+.+...|++++|.+.|++....       ....+.-+...+.-.+++++|...|.++.+..-. +..+|..+..
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a  347 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence            543 345667899999999999976542       3445666777888899999999999999986332 4555555444


Q ss_pred             -HHHhcCCH-------HHHHHHHHHHHhh
Q 020976          295 -GLRHSGCR-------REAKKIQSKIRMA  315 (319)
Q Consensus       295 -~~~~~g~~-------~~a~~~~~~~~~~  315 (319)
                       ++...|+.       ++|.++|+++...
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence             44668888       8888888887543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.21  E-value=0.0015  Score=40.18  Aligned_cols=63  Identities=14%  Similarity=0.036  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHccCChhHHHHHHHHHHHc----CC-ccC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          252 FTYSSMVHNLCKAKRLPSASKLLLSCLKS----GV-RIL-KSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      .+++.+...|...|++++|+..|++.++.    |. .|+ ..++..+..++...|++++|.+++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            35667777777888888888877777643    21 122 46777888888889999999888887543

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.17  E-value=0.035  Score=45.86  Aligned_cols=66  Identities=12%  Similarity=-0.031  Sum_probs=55.7

Q ss_pred             CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976            7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKELGDS   74 (319)
Q Consensus         7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   74 (319)
                      +.+...|+.+..+|.+.|++++|+..|++..+.+  |+.    .+|..+..+|...|+.++|.+.+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3467778999999999999999999999988864  442    35888999999999999999999998874

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.15  E-value=0.0012  Score=40.61  Aligned_cols=63  Identities=17%  Similarity=0.090  Sum_probs=39.4

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKH----GFV-PE-LVTYNILIKGLCKAGRLRTARWILKELG   72 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~   72 (319)
                      ..+|+.+...|...|++++|++.|++..+.    |.. |+ ..++..+...+...|++++|.+.+++..
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345677777777777777777777776532    111 22 4456666777777777777777776654

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.15  E-value=0.015  Score=39.35  Aligned_cols=86  Identities=6%  Similarity=0.035  Sum_probs=70.7

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQK---------------HGFVPELVTYNILIKGLCKAGRLRTARWILKELGD   73 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   73 (319)
                      |..++..+|.++++.|+.+....+++..=.               ....|+..+..+++.+|+..+++..|.++++...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            567899999999999999999999876421               12458899999999999999999999999999876


Q ss_pred             -CCCCCChhhHHHHHHHHHhcC
Q 020976           74 -SGHAPNAITYTTIMKCCFRNR   94 (319)
Q Consensus        74 -~~~~~~~~~~~~l~~~~~~~~   94 (319)
                       -+++.+..+|..|+.-+....
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~v~s  102 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAYVLS  102 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHHHhc
Confidence             456777888999887655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.084  Score=40.91  Aligned_cols=147  Identities=19%  Similarity=0.191  Sum_probs=92.5

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976           54 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE  133 (319)
Q Consensus        54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  133 (319)
                      .....|++..|..+|......... +...--.+..++...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            455778888888888887765333 4566667778888888888888888876544211112222233455555556555


Q ss_pred             HHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcHHhHHHHHHHHhccCChhHH
Q 020976          134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GFECDKYTHTILIDGLCKAGNIKGA  204 (319)
Q Consensus       134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a  204 (319)
                      ...+-.++-..  +-|...-..+...+...|+.+.|.+.+-.+.+.  |.. |...-..++..+.-.|.-+.+
T Consensus       222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~  291 (304)
T COG3118         222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL  291 (304)
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence            55555555543  336666667777788888888888877776654  333 555666677776666643333

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.09  E-value=0.11  Score=42.20  Aligned_cols=35  Identities=11%  Similarity=0.042  Sum_probs=20.9

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhH
Q 020976          220 LEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTY  254 (319)
Q Consensus       220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  254 (319)
                      .-.+..++.+..-.|+.+.|.+..+++....+..|
T Consensus       305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            33445566666666677777666666665544444

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.19  Score=44.03  Aligned_cols=285  Identities=15%  Similarity=0.091  Sum_probs=153.0

Q ss_pred             HhHHHHHHHHhhcCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC----CChhhHH
Q 020976           11 ATFNIMLNGLCKNRYT--DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA----PNAITYT   84 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~   84 (319)
                      ..|......+.+..+.  +++++..++=...-.. ...+|..+.+.....|+++-|..+++.=...+..    .+..-+.
T Consensus       472 ~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~  550 (829)
T KOG2280|consen  472 RVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSS  550 (829)
T ss_pred             HHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHH
Confidence            4455555555555322  2223322222222122 4456666666666778888887776543332211    1233345


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCC-----------CCCCcccHHHHHH--------HHHHcCchHHHHHHH--HHHHh
Q 020976           85 TIMKCCFRNRKYKLGLEILSAMKRKG-----------YTFDGFGYCTVIA--------AFVKIGRLKEATDYM--EQMVT  143 (319)
Q Consensus        85 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~ll~--------~~~~~~~~~~a~~~~--~~~~~  143 (319)
                      ..+.-+...|+.+....++-.+...-           .+.....|.-+++        .+.+.++...+...|  +....
T Consensus       551 ~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~  630 (829)
T KOG2280|consen  551 LALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYA  630 (829)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhh
Confidence            55666677777777666665554321           1111112222221        111122222222211  11000


Q ss_pred             C-CCccChhhHHHHHHHHHhcCCHH----------HHHHHHHHHHH-cCCCCcHHhHHHHHHHHhccCChhHHHHHHHHH
Q 020976          144 D-GVQLDIVSYNTLINLYCKEGKLE----------AAYLLLDEMEK-QGFECDKYTHTILIDGLCKAGNIKGARLHLEYM  211 (319)
Q Consensus       144 ~-~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  211 (319)
                      . .+.+-.........++.+.....          +-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.
T Consensus       631 ~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F  710 (829)
T KOG2280|consen  631 AETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF  710 (829)
T ss_pred             hhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc
Confidence            0 01111222233344444433311          11222222221 222223334555566667788888888877665


Q ss_pred             HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHH
Q 020976          212 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA  291 (319)
Q Consensus       212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  291 (319)
                      .    -||...|-.-+.+++..+++++.+++-+...  .|.-|..++.+|.+.|+.++|.+++-+..     +..    -
T Consensus       711 k----ipdKr~~wLk~~aLa~~~kweeLekfAkskk--sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----e  775 (829)
T KOG2280|consen  711 K----IPDKRLWWLKLTALADIKKWEELEKFAKSKK--SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----E  775 (829)
T ss_pred             C----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC--CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----H
Confidence            4    5888888888899999999998888877554  47888899999999999999999886642     111    5


Q ss_pred             HHHHHHhcCCHHHHHHHHHH
Q 020976          292 VVDGLRHSGCRREAKKIQSK  311 (319)
Q Consensus       292 l~~~~~~~g~~~~a~~~~~~  311 (319)
                      ...+|.+.|++.+|.+..-+
T Consensus       776 kv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  776 KVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHHHHHhccHHHHHHHHHH
Confidence            67788888888888776543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.05  E-value=0.12  Score=41.56  Aligned_cols=110  Identities=17%  Similarity=0.102  Sum_probs=88.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 020976          151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL  230 (319)
Q Consensus       151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  230 (319)
                      .+.+..+.-+...|+...|.++-.+..    .|+...|...+.+++..++|++...+-..      +-++..|..++.+|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence            345556777788899988888876663    57999999999999999999998876432      23457899999999


Q ss_pred             HhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHH
Q 020976          231 GKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS  276 (319)
Q Consensus       231 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  276 (319)
                      .+.|+..+|..+..++.      +..-+..|.+.|++.+|.+...+
T Consensus       248 ~~~~~~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  248 LKYGNKKEASKYIPKIP------DEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HHCCCHHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999998833      36677888999999999877554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=97.04  E-value=0.046  Score=36.74  Aligned_cols=137  Identities=13%  Similarity=0.129  Sum_probs=80.5

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCCHH
Q 020976          161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE---AYNCIVDRLGKDGKID  237 (319)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~  237 (319)
                      .-.|..++..++..+...+.   +..-++.+|--....-+-+-..++++.+-+.   .|..   -...++.+|...|.  
T Consensus        13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~--   84 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK--   84 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT---
T ss_pred             HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc--
Confidence            34678888888888877652   3344555554444444444444444444332   2221   22334444444433  


Q ss_pred             HHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976          238 HAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI  317 (319)
Q Consensus       238 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i  317 (319)
                                  +.......+..+...|+-+...+++..+.+ +-.+++.....+..+|.+.|+..++.+++++.=+.|+
T Consensus        85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence                        334455567778889999998899988875 3467888899999999999999999999998877776


Q ss_pred             c
Q 020976          318 S  318 (319)
Q Consensus       318 ~  318 (319)
                      .
T Consensus       152 k  152 (161)
T PF09205_consen  152 K  152 (161)
T ss_dssp             H
T ss_pred             H
Confidence            3

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.043  Score=43.20  Aligned_cols=114  Identities=15%  Similarity=0.175  Sum_probs=47.0

Q ss_pred             CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----HhHHHHHHHHhccCChhHH
Q 020976          129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK----YTHTILIDGLCKAGNIKGA  204 (319)
Q Consensus       129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a  204 (319)
                      |+..+|-..++++.+. .|.|...+...=.++.-+|+.+.-...++++... ..||.    .....+.-++...|-+++|
T Consensus       117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            4444444444444443 3334444444444444455444444444444322 11111    1111122222344445555


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976          205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES  245 (319)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  245 (319)
                      ++.-++..+.+ +.|.-.-......+.-.|++.++.++..+
T Consensus       195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            54444444433 23333333444444444555555444443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.92  E-value=0.24  Score=43.21  Aligned_cols=226  Identities=13%  Similarity=0.115  Sum_probs=123.9

Q ss_pred             hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC--------cccHHHHHHHHHHcCch
Q 020976           61 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFD--------GFGYCTVIAAFVKIGRL  131 (319)
Q Consensus        61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~--------~~~~~~ll~~~~~~~~~  131 (319)
                      .++|.++.++      .|.+..|..+.......-.++-|...|-+...- |++.-        ...-.+=+.+  --|++
T Consensus       679 ledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~f  750 (1189)
T KOG2041|consen  679 LEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEF  750 (1189)
T ss_pred             hHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcch
Confidence            4556555432      578888998888777777777777776655431 22111        1111111222  23889


Q ss_pred             HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH----------------HHHcCCCCcHHhHHHHHHHH
Q 020976          132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE----------------MEKQGFECDKYTHTILIDGL  195 (319)
Q Consensus       132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------------~~~~~~~~~~~~~~~l~~~~  195 (319)
                      ++|++++-++....         ..+..+.+.|+|-...++++.                |-+.  ..+...|......|
T Consensus       751 eeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY  819 (1189)
T KOG2041|consen  751 EEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYY  819 (1189)
T ss_pred             hHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            99999988776542         234455555555555544432                1110  11223344444455


Q ss_pred             hccCChhHHHHHHH------HHHh--cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCCh
Q 020976          196 CKAGNIKGARLHLE------YMNK--IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRL  267 (319)
Q Consensus       196 ~~~~~~~~a~~~~~------~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~  267 (319)
                      ...|+.+.-.+.+-      .+..  ..++-+....-.+.+++.+.|.-++|.+.+-+...+.     ..+..|...+++
T Consensus       820 ~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW  894 (1189)
T KOG2041|consen  820 SYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQW  894 (1189)
T ss_pred             HhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHH
Confidence            55554443322221      1111  1245566777778888888888888888877665442     345566777777


Q ss_pred             hHHHHHHHHHHHcCCccCHHH--------------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          268 PSASKLLLSCLKSGVRILKSA--------------QKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       268 ~~a~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      .+|.++.++..-    |...+              ..-.|..+.++|..-.|.+++.+|-+
T Consensus       895 ~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  895 GEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence            777777665421    11111              11234455667776666666666644

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.87  E-value=0.26  Score=42.65  Aligned_cols=217  Identities=12%  Similarity=0.062  Sum_probs=114.1

Q ss_pred             HHHHHHHhhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH-----HH
Q 020976           14 NIMLNGLCKNRYTD--NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT-----TI   86 (319)
Q Consensus        14 ~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l   86 (319)
                      +..=.+|.+-.+..  +.+.-+++++++|-.|+...   +...++-.|++.+|.++|.+--..+-  -.+.|+     -+
T Consensus       602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~  676 (1081)
T KOG1538|consen  602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDY  676 (1081)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHH
Confidence            33334455444432  33334556777887787654   44566778888888888865322110  011111     12


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHH------HHHhCCCc---cChhhHHHHH
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME------QMVTDGVQ---LDIVSYNTLI  157 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~---~~~~~~~~l~  157 (319)
                      .+-+...|+.++-..+.++-.+-  ..+..--.+....+...|+.++|..+.-      -+.+.+-+   .+..+...+.
T Consensus       677 aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a  754 (1081)
T KOG1538|consen  677 AQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCA  754 (1081)
T ss_pred             HHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHH
Confidence            23344455544443333322211  1111112234455566777777765432      11111111   2333444445


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChh-----------hHHHH
Q 020976          158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE-----------AYNCI  226 (319)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l  226 (319)
                      .-+.+...+..|.++|..|-..         ..+++.....++|++|..+-+...+.  .|+..           -|...
T Consensus       755 ~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEA  823 (1081)
T KOG1538|consen  755 TYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEA  823 (1081)
T ss_pred             HHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHH
Confidence            5555667778888888877532         45677788899999999888776553  33321           12223


Q ss_pred             HHHHHhcCCHHHHHHHHHhhcc
Q 020976          227 VDRLGKDGKIDHAINVFESMEV  248 (319)
Q Consensus       227 ~~~~~~~~~~~~a~~~~~~~~~  248 (319)
                      -.+|.+.|+-.+|.++++++..
T Consensus       824 qkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  824 QKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             HHHHHHhcchHHHHHHHHHhhh
Confidence            3455566666666666665543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.80  E-value=0.18  Score=41.79  Aligned_cols=66  Identities=12%  Similarity=0.008  Sum_probs=54.7

Q ss_pred             CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          112 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI----VSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       112 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      +.+...++.+..+|.+.|++++|+..|++..+.  .|+.    .+|..+..+|...|+.++|++.+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345677888888999999999999999998885  3443    35888999999999999999999998875

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.072  Score=42.02  Aligned_cols=150  Identities=13%  Similarity=0.076  Sum_probs=84.5

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh--H--HHHHHHHHhcCChhH
Q 020976           23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT--Y--TTIMKCCFRNRKYKL   98 (319)
Q Consensus        23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~--~~l~~~~~~~~~~~~   98 (319)
                      .|++.+|-..++++.+. .+.|.-.+...=.+|...|+...-...++++... -.|+...  |  ..+.-++...|-+++
T Consensus       116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            45556666666666654 3446666666666777777776666666666542 1223222  2  223334456677777


Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC---CCccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020976           99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD---GVQLDIVSYNTLINLYCKEGKLEAAYLLLDE  175 (319)
Q Consensus        99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  175 (319)
                      |++.-++..+.+ +.|.....++...+-..|+..++.++..+-...   +.-.-..-|-...-.+...+.++.|+++|+.
T Consensus       194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            777777766655 555555666666666677777777666554332   0001112222333344555777777777764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.047  Score=44.10  Aligned_cols=91  Identities=13%  Similarity=0.008  Sum_probs=53.3

Q ss_pred             HHHhhcCChHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH
Q 020976           18 NGLCKNRYTDNALRMFRGLQKH-----GFVP---------ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY   83 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (319)
                      ..+.+.|++..|..-|++....     +..+         -..+++.+.-++.+.+++..|++..++.+..+ ++|....
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            4677888999988888875442     1111         12344555555566666666666666655543 2355555


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           84 TTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        84 ~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      -.-.+++...|+++.|...|+++.+.
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            55555666666666666666666554

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.72  E-value=0.11  Score=36.17  Aligned_cols=20  Identities=30%  Similarity=0.414  Sum_probs=7.7

Q ss_pred             HHHHcCchHHHHHHHHHHHh
Q 020976          124 AFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~  143 (319)
                      .+...+.......+++.+..
T Consensus        16 ~~~~~~~~~~l~~yLe~~~~   35 (140)
T smart00299       16 LFEKRNLLEELIPYLESALK   35 (140)
T ss_pred             HHHhCCcHHHHHHHHHHHHc
Confidence            33333333444444443333

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.61  E-value=0.29  Score=39.70  Aligned_cols=258  Identities=16%  Similarity=0.155  Sum_probs=157.3

Q ss_pred             HHHHHHHHHH--hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976           47 TYNILIKGLC--KAGRLRTARWILKELGDSGHAPNAITYTTIMKCC--FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI  122 (319)
Q Consensus        47 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  122 (319)
                      -|..|-.++.  -.||-..|.+.-.+..+. +..|......++.+-  .-.|+++.|.+-|+.|.... ....--...|.
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLy  161 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLY  161 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHH
Confidence            3444444443  356777777776655432 334556666666543  34699999999999998531 11111122333


Q ss_pred             HHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHH--hHHHHHHHHh---
Q 020976          123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKY--THTILIDGLC---  196 (319)
Q Consensus       123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---  196 (319)
                      -..-+.|+.+.|..+-++....- +.-...+...+...+..|+|+.|+++++.-.... +.++..  .-..|+.+-.   
T Consensus       162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~  240 (531)
T COG3898         162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL  240 (531)
T ss_pred             HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence            33456789999988888877652 3345678889999999999999999999876543 344432  1222332211   


Q ss_pred             ccCChhHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHH
Q 020976          197 KAGNIKGARLHLEYMNKIGFDSNLEA-YNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLL  275 (319)
Q Consensus       197 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  275 (319)
                      -..+...|...-.+..+  +.|+..- -..-..++.+.|+..++-.+++.+-+..+..--..+..+.+.|+  .+..-++
T Consensus       241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlk  316 (531)
T COG3898         241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLK  316 (531)
T ss_pred             hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHH
Confidence            12345566665555554  3455432 23345678999999999999998876644443333444455555  4444444


Q ss_pred             HHHHc-CCcc-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976          276 SCLKS-GVRI-LKSAQKAVVDGLRHSGCRREAKKIQSK  311 (319)
Q Consensus       276 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~  311 (319)
                      +..+. ..+| +......+.++-...|++..|+.--+.
T Consensus       317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aea  354 (531)
T COG3898         317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEA  354 (531)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            44322 2344 556777778888888988877654433

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.59  E-value=0.026  Score=43.23  Aligned_cols=48  Identities=10%  Similarity=0.118  Sum_probs=24.4

Q ss_pred             chHhHHHHHHHHhhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 020976            9 CTATFNIMLNGLCKN-----RYTDNALRMFRGLQKHGFVPELVTYNILIKGLC   56 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   56 (319)
                      |-.+|-..+..+...     +.++-....+..|.+.|+.-|..+|+.|++.+-
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP  118 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFP  118 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence            444444444444432     233434444555566666666666666665543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.56  E-value=0.42  Score=40.90  Aligned_cols=179  Identities=17%  Similarity=0.100  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh------hhHHHHHHHHHh----cCChh
Q 020976           28 NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA------ITYTTIMKCCFR----NRKYK   97 (319)
Q Consensus        28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~   97 (319)
                      -..-+|+-+... +||   .+..++....=.||-+.+++.+.+..+.+---.+      -.|+..+..+..    ..+.+
T Consensus       175 ~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~  250 (468)
T PF10300_consen  175 FGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE  250 (468)
T ss_pred             HHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence            345566666664 444   4455777777788888888888887653211111      224444443333    34678


Q ss_pred             HHHHHHHHHHhCCCCCCcccHHHH-HHHHHHcCchHHHHHHHHHHHhCC--C-ccChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976           98 LGLEILSAMKRKGYTFDGFGYCTV-IAAFVKIGRLKEATDYMEQMVTDG--V-QLDIVSYNTLINLYCKEGKLEAAYLLL  173 (319)
Q Consensus        98 ~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~  173 (319)
                      .|.++++.+.+.  -|+...|... .+.+...|++++|++.|++.....  . +.....+--+.-++.-..+|++|.+.|
T Consensus       251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f  328 (468)
T PF10300_consen  251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF  328 (468)
T ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence            888899888876  4565555433 355667899999999999765421  1 123344556677788889999999999


Q ss_pred             HHHHHcCCCCcHHhHHHHHHH-HhccCCh-------hHHHHHHHHHHh
Q 020976          174 DEMEKQGFECDKYTHTILIDG-LCKAGNI-------KGARLHLEYMNK  213 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~~~  213 (319)
                      ..+.+.+ ..+..+|..+..+ +...|+.       ++|..++.++..
T Consensus       329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            9998753 3355555544444 3456666       888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.26  Score=38.37  Aligned_cols=51  Identities=18%  Similarity=0.206  Sum_probs=24.4

Q ss_pred             HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME  177 (319)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  177 (319)
                      ...|+..+|...|+...... +-+...--.++.+|...|+.+.|..++..+.
T Consensus       145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP  195 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP  195 (304)
T ss_pred             hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence            34455555555555554431 1123334444555555555555555555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.52  E-value=0.16  Score=42.85  Aligned_cols=157  Identities=14%  Similarity=0.102  Sum_probs=85.4

Q ss_pred             HHHHcCchHHHHHHHHHH-HhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh
Q 020976          124 AFVKIGRLKEATDYMEQM-VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK  202 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  202 (319)
                      ...-.++++.+.+....- .-..+  +....+.+++.+.+.|-.+.|+.+..+-.            .-.....+.|+.+
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~  335 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD  335 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred             HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence            344557777766665411 11112  23446777777777787777776654321            1122334567777


Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 020976          203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV  282 (319)
Q Consensus       203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  282 (319)
                      .|.++.+.      ..+...|..|.+...+.|+++.|.+.|.+...     |..++-.|...|+.+...++.+.....|.
T Consensus       336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~  404 (443)
T PF04053_consen  336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD  404 (443)
T ss_dssp             HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            77665432      23566788888888888888888888877663     55566667777777776666666655542


Q ss_pred             ccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976          283 RILKSAQKAVVDGLRHSGCRREAKKIQSK  311 (319)
Q Consensus       283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  311 (319)
                            ++....++.-.|+.++..+++.+
T Consensus       405 ------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  405 ------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             ------HHHHHHHHHHcCCHHHHHHHHHH
Confidence                  33334444455666666655544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.37  E-value=0.074  Score=40.71  Aligned_cols=93  Identities=16%  Similarity=0.119  Sum_probs=57.1

Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC------CchhHHHHH
Q 020976          187 THTILIDGLCKAGNIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMV  258 (319)
Q Consensus       187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~  258 (319)
                      .|+.-+..+ +.|++..|...|...++..  -.-....+-.|..++...|+++.|..+|..+...      -+..+-.+.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            455554443 5566777777777766652  1222345566677777777777777777665533      445566666


Q ss_pred             HHHHccCChhHHHHHHHHHHHc
Q 020976          259 HNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       259 ~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      ....+.|+.++|...|++..+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            6666677777777777776654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.36  E-value=0.12  Score=35.66  Aligned_cols=72  Identities=17%  Similarity=0.140  Sum_probs=43.1

Q ss_pred             HHHHhccCChhHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc----hhHHHHHHHHHc
Q 020976          192 IDGLCKAGNIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCK  263 (319)
Q Consensus       192 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~  263 (319)
                      .....+.|++++|.+.|+.+...-  -+-....-..++.+|.+.++++.|...+++..+.+|    .-|.....+++.
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            334456677888877777776651  122334556677777777777777777777664422    234444444443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.19  Score=40.80  Aligned_cols=123  Identities=17%  Similarity=0.100  Sum_probs=68.2

Q ss_pred             HHHHHcCchHHHHHHHHHHHhC-----CCc---------cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH
Q 020976          123 AAFVKIGRLKEATDYMEQMVTD-----GVQ---------LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH  188 (319)
Q Consensus       123 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  188 (319)
                      ..+.+.|++..|..-|++....     +.+         .-..++..+.-++.+.+++..|++.-.+.+..+.. +....
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHH
Confidence            3566777777777777665432     111         11234566666677777777777777766665433 55555


Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHhhc
Q 020976          189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID-HAINVFESME  247 (319)
Q Consensus       189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~  247 (319)
                      ..-..++...|+++.|+..|+.+.+.. |-|..+-+.++.+-.+..... ...++|..|.
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556666777777777777777776643 223333333443333333322 2345555444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.34  E-value=0.11  Score=39.87  Aligned_cols=97  Identities=19%  Similarity=0.146  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC--CCCChhhHHHHH
Q 020976          152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFE--CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG--FDSNLEAYNCIV  227 (319)
Q Consensus       152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~  227 (319)
                      .|+.-+.. .+.|++..|...|...++..+.  -....+..|..++...|++++|..+|..+.+.-  .+.-+..+.-+.
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            57666654 4567799999999988876432  123456678888889999999999998887651  122346777788


Q ss_pred             HHHHhcCCHHHHHHHHHhhccC
Q 020976          228 DRLGKDGKIDHAINVFESMEVK  249 (319)
Q Consensus       228 ~~~~~~~~~~~a~~~~~~~~~~  249 (319)
                      .+..+.|+.++|...|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            8888899999999999888765

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.34  E-value=0.91  Score=42.33  Aligned_cols=82  Identities=18%  Similarity=0.152  Sum_probs=47.3

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchh---HHHHHHHHHcc
Q 020976          188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT---YSSMVHNLCKA  264 (319)
Q Consensus       188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~  264 (319)
                      |.+....+.....+++|.-.|+..-+         ...-+.+|..+|++.+|..+..++...-...   -..|+.-+...
T Consensus       942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen  942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHc
Confidence            33444444555666666665554322         1233566677777777777777666552222   25566666677


Q ss_pred             CChhHHHHHHHHHH
Q 020976          265 KRLPSASKLLLSCL  278 (319)
Q Consensus       265 ~~~~~a~~~~~~~~  278 (319)
                      +++-+|-+++.+..
T Consensus      1013 ~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYL 1026 (1265)
T ss_pred             ccchhHHHHHHHHh
Confidence            77777766666554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.33  E-value=0.49  Score=39.21  Aligned_cols=126  Identities=13%  Similarity=0.189  Sum_probs=93.3

Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHH
Q 020976          187 THTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC  262 (319)
Q Consensus       187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~  262 (319)
                      .|...+....+..-.+.|..+|.++.+.+ +.++..++++++..+ ..|+...|..+|+--...   ++.--+..+..+.
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi  477 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI  477 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            45666677777788899999999999887 567777888888765 467888899999864433   3444456677778


Q ss_pred             ccCChhHHHHHHHHHHHcCCccC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          263 KAKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       263 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      ..++-+.|..+|+..... +.-+  ...|..+|+--..-|+...+..+-+++.+
T Consensus       478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            889999999999966543 2222  46788899888899999887776666543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.33  Score=36.65  Aligned_cols=202  Identities=11%  Similarity=0.024  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF  125 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  125 (319)
                      ..|..-..+|....++++|...+.+..+- ...+...|+.       ...++.|.-+.+++.+.  +--...|+-....|
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence            34555555666666666666655555431 1212222211       11233344444444432  11223344555566


Q ss_pred             HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC--CCcHHhHHHHHHHHhccCC
Q 020976          126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GF--ECDKYTHTILIDGLCKAGN  200 (319)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~  200 (319)
                      ...|.++.|-..+++.-+.                ..+-++++|+++|++....   +-  .--...+..+-+.+.+...
T Consensus       102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k  165 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK  165 (308)
T ss_pred             HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence            6666666655555544321                1233455555555554321   00  1112234445556666677


Q ss_pred             hhHHHHHHHHHHhc----CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhhccC-------CchhHHHHHHHHHccCChh
Q 020976          201 IKGARLHLEYMNKI----GFDSNL-EAYNCIVDRLGKDGKIDHAINVFESMEVK-------DSFTYSSMVHNLCKAKRLP  268 (319)
Q Consensus       201 ~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~  268 (319)
                      ++++-..+.+-...    .--++. ..+...|-.+.-..++..|..+++.-...       +..+...|+.+|- .|+.+
T Consensus       166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E  244 (308)
T KOG1585|consen  166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE  244 (308)
T ss_pred             hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence            77666555443211    111121 33445555566667777787777762211       5556666776663 45666


Q ss_pred             HHHHHH
Q 020976          269 SASKLL  274 (319)
Q Consensus       269 ~a~~~~  274 (319)
                      ++..++
T Consensus       245 ~~~kvl  250 (308)
T KOG1585|consen  245 EIKKVL  250 (308)
T ss_pred             HHHHHH
Confidence            555544

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.26  E-value=0.25  Score=35.14  Aligned_cols=132  Identities=11%  Similarity=0.065  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH--
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI-TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV--  121 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--  121 (319)
                      ...|..-+. ++..+..++|+.-|..+.+.|...=+. ..-.........|+...|...|+++-...  +.+....-+  
T Consensus        59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt--~~P~~~rd~AR  135 (221)
T COG4649          59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT--SIPQIGRDLAR  135 (221)
T ss_pred             hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC--CCcchhhHHHH
Confidence            344444443 234455566666666665544331110 11111223345566666666666655442  222222111  


Q ss_pred             -H--HHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          122 -I--AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       122 -l--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                       =  -.+...|.++++....+-+...+-+.-...-..|.-+-.+.|++.+|.++|.++...
T Consensus       136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence             1  123445666666665555555444444444455555556666666666666666543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.25  E-value=0.025  Score=30.18  Aligned_cols=28  Identities=14%  Similarity=0.133  Sum_probs=15.9

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKH   39 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~   39 (319)
                      +|..+...|.+.|++++|+++|++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4445555555556666666666555554

>PRK11906 transcriptional regulator; Provisional

Probab=96.24  E-value=0.57  Score=39.10  Aligned_cols=111  Identities=15%  Similarity=0.000  Sum_probs=64.8

Q ss_pred             hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020976           96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE  175 (319)
Q Consensus        96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  175 (319)
                      ..+|.++.++..+.+ +.|+.....+..+....++++.+...|++....+ +-...+|......+.-.|+.++|.+.+++
T Consensus       320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            455666666666665 5566666666666667777777777887777652 22334455555555667778888777777


Q ss_pred             HHHcCCCC-cHHhHHHHHHHHhccCChhHHHHHHH
Q 020976          176 MEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLE  209 (319)
Q Consensus       176 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~  209 (319)
                      ..+..+.- -.......+..|+.. ..+.+..++-
T Consensus       398 alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  431 (458)
T PRK11906        398 SLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY  431 (458)
T ss_pred             HhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence            66543211 112223333355443 3455555553

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.24  E-value=0.093  Score=40.81  Aligned_cols=79  Identities=14%  Similarity=0.097  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCcccHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR-----KGYTFDGFGYC  119 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  119 (319)
                      ..++..++..+...|+++.+.+.++++....+ -+...|..++.+|.+.|+...|+..|+++.+     .|+.|.+.+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            45677788888888888888888888877643 3777888888888888888888888877764     47777777666


Q ss_pred             HHHHH
Q 020976          120 TVIAA  124 (319)
Q Consensus       120 ~ll~~  124 (319)
                      .....
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            66655

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.22  E-value=0.2  Score=33.71  Aligned_cols=53  Identities=17%  Similarity=0.073  Sum_probs=24.6

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 020976           55 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR  108 (319)
Q Consensus        55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  108 (319)
                      .+..|+.+.|++.|.+....- +-....||.-..++--.|+.++|++-+++..+
T Consensus        53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            344455555555555444431 12344455555555445555555544444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.14  E-value=0.19  Score=42.43  Aligned_cols=156  Identities=16%  Similarity=0.136  Sum_probs=71.6

Q ss_pred             HHHhhcCChHHHHHHHHH--HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976           18 NGLCKNRYTDNALRMFRG--LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK   95 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   95 (319)
                      ....-.++++++.++.+.  +.. .+  .....+.++..+-+.|-.+.|+++..+         +.   .-.....+.|+
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~  333 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN  333 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred             HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence            334445666665555531  111 11  134456666666666666666655322         11   12233445566


Q ss_pred             hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020976           96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE  175 (319)
Q Consensus        96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  175 (319)
                      ++.|.++.++.      .+...|..|.....+.|+++-|++.|.+..+         |..++-.|...|+.+...++.+.
T Consensus       334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~  398 (443)
T PF04053_consen  334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI  398 (443)
T ss_dssp             HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence            66665544322      2445666666666666666666666655432         44455555566666555555555


Q ss_pred             HHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHH
Q 020976          176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE  209 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  209 (319)
                      ....|-      ++....++...|+.++..+++.
T Consensus       399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  399 AEERGD------INIAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             HHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred             HHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence            544431      2333333344455555554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.09  E-value=0.18  Score=33.94  Aligned_cols=90  Identities=18%  Similarity=0.093  Sum_probs=58.2

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChh---hHHHHHHHHHhcC
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIV---SYNTLINLYCKEG  164 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~---~~~~l~~~~~~~~  164 (319)
                      +.+..|+.+.|++.|.+....- +..+..||.-..++.-.|+.++|+.-+++..+. |.+ +..   .|..-...|...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence            4566777777877777776653 556677777777777777777777777777664 222 222   2333334566677


Q ss_pred             CHHHHHHHHHHHHHcC
Q 020976          165 KLEAAYLLLDEMEKQG  180 (319)
Q Consensus       165 ~~~~a~~~~~~~~~~~  180 (319)
                      +-+.|..=|...-+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            7777777776666554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.06  E-value=0.03  Score=29.84  Aligned_cols=40  Identities=15%  Similarity=0.095  Sum_probs=26.3

Q ss_pred             hhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHH
Q 020976          252 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV  292 (319)
Q Consensus       252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  292 (319)
                      .++..+...|...|++++|.++|+++++... -|...+..+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~L   41 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHh
Confidence            4566777777778888888888887777532 244444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.02  E-value=0.29  Score=33.74  Aligned_cols=82  Identities=10%  Similarity=-0.032  Sum_probs=53.7

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC   90 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (319)
                      +-.-.....+.|++++|++.|+.+..+-+-  -...+--.++.+|.+.++++.|...+++..+..+.-.-.-|...+.++
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            333445566778888888888888765211  234556677888888888888888888888754443334566666665


Q ss_pred             HhcC
Q 020976           91 FRNR   94 (319)
Q Consensus        91 ~~~~   94 (319)
                      +...
T Consensus        93 ~~~~   96 (142)
T PF13512_consen   93 SYYE   96 (142)
T ss_pred             HHHH
Confidence            5433

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.01  E-value=0.59  Score=37.18  Aligned_cols=128  Identities=13%  Similarity=0.200  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHhhCCCC---CChhhHHHHHHHHHhcCC-
Q 020976           26 TDNALRMFRGLQKHGFVPELVTYNILIKGLCK--AG----RLRTARWILKELGDSGHA---PNAITYTTIMKCCFRNRK-   95 (319)
Q Consensus        26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-   95 (319)
                      +++.+++++.|.+.|.+-+..+|-+.......  ..    ...+|..+|+.|++..+-   ++..++..++..  ...+ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34455666666776666555554442222222  11    244566666666654221   223333333322  2222 


Q ss_pred             ---hhHHHHHHHHHHhCCCCCCcc--cHHHHHHHHHHcCc--hHHHHHHHHHHHhCCCccChhhHHH
Q 020976           96 ---YKLGLEILSAMKRKGYTFDGF--GYCTVIAAFVKIGR--LKEATDYMEQMVTDGVQLDIVSYNT  155 (319)
Q Consensus        96 ---~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~  155 (319)
                         .+.+..+|+.+.+.|+..+..  ....++.......+  ...+..+++.+.+.|+++....|..
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~  222 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT  222 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence               234455555555555443322  11111111111111  2345555555555555555444443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.95  E-value=0.51  Score=36.00  Aligned_cols=165  Identities=15%  Similarity=0.139  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGH--APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI  122 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  122 (319)
                      ...|+.-+. -.+.|++++|.+.|+.+....+  +-...+.-.++.++.+.++++.|+...++....--......|..-|
T Consensus        35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            334444333 3356777777777777765321  1123445555566667777777777777666542222223344444


Q ss_pred             HHHHHc-------CchHH---HHHHHHHHHhCCCc-----cChhh------------HHHHHHHHHhcCCHHHHHHHHHH
Q 020976          123 AAFVKI-------GRLKE---ATDYMEQMVTDGVQ-----LDIVS------------YNTLINLYCKEGKLEAAYLLLDE  175 (319)
Q Consensus       123 ~~~~~~-------~~~~~---a~~~~~~~~~~~~~-----~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~  175 (319)
                      .+++..       .|...   |..-|++++.. .|     ||...            =..+.+.|.+.|.+..|..-++.
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            444432       22222   33333333332 11     11110            02234556666666666666666


Q ss_pred             HHHcCCCCc---HHhHHHHHHHHhccCChhHHHHHHHHHH
Q 020976          176 MEKQGFECD---KYTHTILIDGLCKAGNIKGARLHLEYMN  212 (319)
Q Consensus       176 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~  212 (319)
                      |.+. .+-+   ...+-.+..+|...|-.++|.+.-.-+.
T Consensus       193 v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         193 VLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             HHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            6654 1111   2234455556666666666665544443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.94  E-value=0.57  Score=37.66  Aligned_cols=54  Identities=7%  Similarity=-0.092  Sum_probs=23.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC-----CCcHHhHHHHHHHHhccCChhHHHHHHH
Q 020976          156 LINLYCKEGKLEAAYLLLDEMEKQGF-----ECDKYTHTILIDGLCKAGNIKGARLHLE  209 (319)
Q Consensus       156 l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~  209 (319)
                      +..++...+.++++++.|+...+-..     -.....+..+...|.+..|++++.-+..
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~  186 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPC  186 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhH
Confidence            34444444555555555554432110     1112234444455555555555544443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=95.92  E-value=0.39  Score=34.31  Aligned_cols=134  Identities=15%  Similarity=0.136  Sum_probs=71.7

Q ss_pred             HHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976          135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI  214 (319)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  214 (319)
                      .+.++.+...+++|+...+..++..+.+.|++...    .++.+.++-+|.......+-.+..  ....+.++--.|.+.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence            44555555667777777777777777777765443    344444555555544433332222  223333333333321


Q ss_pred             -CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976          215 -GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK  279 (319)
Q Consensus       215 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  279 (319)
                       +     ..+..+++.+...|++-+|.++.+.....+......++.+-.+.+|...-..+++-..+
T Consensus        88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             1     13455666667777777777777665444444445555555555555544444444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.91  E-value=0.7  Score=37.19  Aligned_cols=227  Identities=14%  Similarity=0.158  Sum_probs=131.2

Q ss_pred             HhhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHH----HHHhhCC-CCCChhhHHHHHHHHHh
Q 020976           20 LCKNRYTDNALRMFRGLQKH--GFVPELVTYNILIKGLCKAGRLRTARWIL----KELGDSG-HAPNAITYTTIMKCCFR   92 (319)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~   92 (319)
                      +....+.++|+..|.....+  +..--..+|..+..+.++.|.+++++..-    +-..+.. -..-...|..+.+++-+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566778888888776543  11112346666777777888777765432    1111100 01123445556666666


Q ss_pred             cCChhHHHHHHHHHHhC-CCCC---CcccHHHHHHHHHHcCchHHHHHHHHHHHhC-----CCccChhhHHHHHHHHHhc
Q 020976           93 NRKYKLGLEILSAMKRK-GYTF---DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-----GVQLDIVSYNTLINLYCKE  163 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~  163 (319)
                      .-++.+++.+-..-... |..|   .-....++..++...+.++++++.|+....-     .......++..+.+.|.+.
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            66666666655444332 2122   1122334556666777888888888877652     1112235678888888899


Q ss_pred             CCHHHHHHHHHHHHH----cCCCCcHH------hHHHHHHHHhccCChhHHHHHHHHHHhc----CCCC-ChhhHHHHHH
Q 020976          164 GKLEAAYLLLDEMEK----QGFECDKY------THTILIDGLCKAGNIKGARLHLEYMNKI----GFDS-NLEAYNCIVD  228 (319)
Q Consensus       164 ~~~~~a~~~~~~~~~----~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~  228 (319)
                      .++++|.-+..+..+    .++. |..      ....+.-++...|....|.+.-++..+.    |-.+ .......+.+
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD  254 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD  254 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            999988776665432    2222 211      2233445566777777777777666543    3222 2344566778


Q ss_pred             HHHhcCCHHHHHHHHHhhc
Q 020976          229 RLGKDGKIDHAINVFESME  247 (319)
Q Consensus       229 ~~~~~~~~~~a~~~~~~~~  247 (319)
                      .|-..|+.+.|+.-++...
T Consensus       255 IyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  255 IYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHhcccHhHHHHHHHHHH
Confidence            8888999888888777644

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.85  E-value=0.098  Score=40.27  Aligned_cols=87  Identities=11%  Similarity=0.116  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----------------ChhHHHHH
Q 020976           44 ELVTYNILIKGLCKA-----GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR----------------KYKLGLEI  102 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~~  102 (319)
                      |-.+|...+..+...     +.++-....++.|.+-|+..|..+|+.|++.+-+..                +-+-++++
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v  145 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV  145 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence            566676666666543     456666667788888888888888888887654422                12345667


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHHcCc
Q 020976          103 LSAMKRKGYTFDGFGYCTVIAAFVKIGR  130 (319)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~  130 (319)
                      +++|...|+.||..+-..|++++.+.+-
T Consensus       146 LeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  146 LEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            7777777777777777777777666553

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.82  E-value=1.1  Score=38.59  Aligned_cols=129  Identities=8%  Similarity=0.021  Sum_probs=63.7

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL-VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC   90 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (319)
                      .|+.++.---.....+.+..+++.++.. . |.. .-|......=.+.|..+.+.++|++-.. +++.+...|...+..+
T Consensus        47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k-y-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~  123 (577)
T KOG1258|consen   47 AWTTLIQENDSIEDVDALREVYDIFLSK-Y-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL  123 (577)
T ss_pred             chHHHHhccCchhHHHHHHHHHHHHHhh-C-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence            3444444444444445555555555543 1 232 2344444444555666666666666554 2444555555554443


Q ss_pred             Hh-cCChhHHHHHHHHHHhC-CCC-CCcccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976           91 FR-NRKYKLGLEILSAMKRK-GYT-FDGFGYCTVIAAFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus        91 ~~-~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  143 (319)
                      .. .|+.+...+.|+..... |.. .+...|...|..-...+++.....+++++.+
T Consensus       124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile  179 (577)
T KOG1258|consen  124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE  179 (577)
T ss_pred             hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence            32 34455555555554432 211 1233455555555555566666666665554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.76  E-value=0.6  Score=35.35  Aligned_cols=207  Identities=10%  Similarity=0.043  Sum_probs=106.9

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC   90 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (319)
                      ..|.....+|....++++|...+.+..+- ...|...|..       ...++.|.-+.+++...  +--...|+.-...|
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence            34556666777777888887776665431 1212222211       12245555555555442  11233455555667


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC---C--CccChhhHHHHHHHHHhcCC
Q 020976           91 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD---G--VQLDIVSYNTLINLYCKEGK  165 (319)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~  165 (319)
                      ...|.++.|-..+++.-+.                ...-++++|++++++...-   +  ...-...+....+.+.+...
T Consensus       102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k  165 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK  165 (308)
T ss_pred             HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence            7777766666665554321                1223444455555443321   0  01112334455566667777


Q ss_pred             HHHHHHHHHHHHHc----CCCCcH-HhHHHHHHHHhccCChhHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCCHH
Q 020976          166 LEAAYLLLDEMEKQ----GFECDK-YTHTILIDGLCKAGNIKGARLHLEYMNKIG---FDSNLEAYNCIVDRLGKDGKID  237 (319)
Q Consensus       166 ~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~  237 (319)
                      +++|-..+.+-...    .-.++. ..|...|-.+....++..+...++.--+.+   -+-+..+...|+.+| ..|+.+
T Consensus       166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E  244 (308)
T KOG1585|consen  166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE  244 (308)
T ss_pred             hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence            77665555433211    111222 235555556666778888888887744331   123456667777766 457777


Q ss_pred             HHHHHHH
Q 020976          238 HAINVFE  244 (319)
Q Consensus       238 ~a~~~~~  244 (319)
                      ++..++.
T Consensus       245 ~~~kvl~  251 (308)
T KOG1585|consen  245 EIKKVLS  251 (308)
T ss_pred             HHHHHHc
Confidence            7766654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.76  E-value=0.4  Score=33.28  Aligned_cols=127  Identities=15%  Similarity=0.112  Sum_probs=88.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK  232 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  232 (319)
                      ...++..+...+.......+++.+...+. .+...++.++..|++.+ ..+....+..      ..+......+++.|.+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~   81 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence            45677888888899999999999988764 57778899999998764 3444444432      1233445557788888


Q ss_pred             cCCHHHHHHHHHhhccCCchhHHHHHHHHHcc-CChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 020976          233 DGKIDHAINVFESMEVKDSFTYSSMVHNLCKA-KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH  298 (319)
Q Consensus       233 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  298 (319)
                      .+.++++.-++.++..     +...+..+... ++++.|.+++.+      ..++..|..++..+..
T Consensus        82 ~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~  137 (140)
T smart00299       82 AKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD  137 (140)
T ss_pred             cCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence            8888888888887653     33344444444 788888888775      2266788888877654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.60  E-value=1.1  Score=37.24  Aligned_cols=144  Identities=14%  Similarity=0.212  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhH-HHHHHH
Q 020976           82 TYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY-NTLINL  159 (319)
Q Consensus        82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~  159 (319)
                      .|...++...+..-++.|..+|-++.+.+ +.++...+++++..++ .|+...|..+|+--...  -||...| +..+..
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f  475 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF  475 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence            45556666666666777888888877776 5566777777776555 46777777777765543  2343333 445666


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 020976          160 YCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG  231 (319)
Q Consensus       160 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  231 (319)
                      +...++-+.|..+|+....+ +..+  ...|..+|..-..-|+...+..+-+++.+.  -|...+.....+.|.
T Consensus       476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~  546 (660)
T COG5107         476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence            67777777788887755432 1112  346777777777777777777766666653  344434444444443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.47  E-value=0.47  Score=32.12  Aligned_cols=141  Identities=14%  Similarity=0.119  Sum_probs=74.3

Q ss_pred             HhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 020976           20 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG   99 (319)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   99 (319)
                      ..-.|..++..++..+....   .+..-+|.++--....-+-+-..++++..-+.   .|...          .|+....
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~----------C~NlKrV   75 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISK----------CGNLKRV   75 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-----------S-THHH
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchh----------hcchHHH
Confidence            34457777777777776653   24555666665555555555555555554331   22221          1222222


Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      ...+-.+     ..+.......+..+...|.-+...+++.++... -.+++...-.+..+|.+.|+..++-+++.+.-+.
T Consensus        76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            2222111     112334455666777777777777777777653 3456667777788888888888888888887777


Q ss_pred             CCC
Q 020976          180 GFE  182 (319)
Q Consensus       180 ~~~  182 (319)
                      |++
T Consensus       150 G~k  152 (161)
T PF09205_consen  150 GLK  152 (161)
T ss_dssp             T-H
T ss_pred             chH
Confidence            654

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.44  E-value=0.38  Score=35.01  Aligned_cols=63  Identities=13%  Similarity=0.140  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKR  108 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  108 (319)
                      ..+..+...|.+.|+.+.|.+.|.++.+....+.  ...+-.+|+.....+++..+...+.+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4567788888888888888888888776533332  34556677777778888887777776654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.43  E-value=0.23  Score=38.71  Aligned_cols=80  Identities=18%  Similarity=0.245  Sum_probs=62.3

Q ss_pred             cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcHHhHH
Q 020976          115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-----QGFECDKYTHT  189 (319)
Q Consensus       115 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  189 (319)
                      ..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            3456777888888888888888888888763 55778888888888888888888888887764     57888877776


Q ss_pred             HHHHHH
Q 020976          190 ILIDGL  195 (319)
Q Consensus       190 ~l~~~~  195 (319)
                      ......
T Consensus       232 ~y~~~~  237 (280)
T COG3629         232 LYEEIL  237 (280)
T ss_pred             HHHHHh
Confidence            666663

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.41  E-value=1.4  Score=37.20  Aligned_cols=60  Identities=17%  Similarity=0.122  Sum_probs=35.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976          154 NTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNK  213 (319)
Q Consensus       154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  213 (319)
                      ..+..++.+.|+.++|.+.+++|.+..... .......++.++...+.+.++..++.+.-+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            345555666677777777777766542221 233556666667777777777766666543

The molecular function of this protein is uncertain.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.32  E-value=2.1  Score=38.58  Aligned_cols=53  Identities=9%  Similarity=-0.068  Sum_probs=35.6

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976          255 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK  311 (319)
Q Consensus       255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  311 (319)
                      .-++..+.+..+++.+..+.+..-+   . ++..|..++..+.+.+..+.-.+...+
T Consensus       709 ~dl~~~~~q~~d~E~~it~~~~~g~---~-~p~l~~~~L~yF~~~~~i~~~~~~v~~  761 (933)
T KOG2114|consen  709 QDLMLYFQQISDPETVITLCERLGK---E-DPSLWLHALKYFVSEESIEDCYEIVYK  761 (933)
T ss_pred             HHHHHHHHHhhChHHHHHHHHHhCc---c-ChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence            3456677778888888887776533   2 777888888888887755544443333

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.29  E-value=0.42  Score=34.78  Aligned_cols=96  Identities=11%  Similarity=0.097  Sum_probs=65.9

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE--LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      ..+..+...|.+.|+.+.|++.|.++.+....|.  ...+-.+++.....+++..+...+.+....-..+.......-+.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            4578899999999999999999999988654433  45677888999999999999999888765321211111111111


Q ss_pred             -----HHHhcCChhHHHHHHHHH
Q 020976           89 -----CCFRNRKYKLGLEILSAM  106 (319)
Q Consensus        89 -----~~~~~~~~~~a~~~~~~~  106 (319)
                           .+...+++..|-+.|-..
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHcc
Confidence                 123456677766666544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=95.27  E-value=0.72  Score=32.98  Aligned_cols=31  Identities=16%  Similarity=0.313  Sum_probs=14.8

Q ss_pred             HHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976          173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKG  203 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  203 (319)
                      ++.+.+.++.|+...+..++..+.+.|.+..
T Consensus        17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~   47 (167)
T PF07035_consen   17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ   47 (167)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            3333444455555555555555555554433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.19  E-value=1.2  Score=35.19  Aligned_cols=123  Identities=14%  Similarity=0.095  Sum_probs=58.9

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCChhhHHHHH-------HHHHhcC-ChhHHHHHHHHHHhC----C----CCCC-----
Q 020976           56 CKAGRLRTARWILKELGDSGHAPNAITYTTIM-------KCCFRNR-KYKLGLEILSAMKRK----G----YTFD-----  114 (319)
Q Consensus        56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~-----  114 (319)
                      .+.|+++.|...+.+........++.....+.       ......+ +++.|..++++..+.    +    ..++     
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46788888888888776532122222222222       2223344 666666666554332    1    1111     


Q ss_pred             cccHHHHHHHHHHcCchH---HHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          115 GFGYCTVIAAFVKIGRLK---EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       115 ~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      ..++..++.+|...+..+   +|..+++.+... .+-.+.++-.-+..+.+.++.+.+.+.+.+|...
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            122334445555544433   344444444333 1112333444455555566666666666666654

It is also involved in sporulation [].

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.10  E-value=0.081  Score=26.68  Aligned_cols=23  Identities=13%  Similarity=0.041  Sum_probs=10.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 020976          289 QKAVVDGLRHSGCRREAKKIQSK  311 (319)
Q Consensus       289 ~~~l~~~~~~~g~~~~a~~~~~~  311 (319)
                      +..+...|.+.|++++|.+++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444455555555555555544

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.10  E-value=0.44  Score=37.45  Aligned_cols=99  Identities=14%  Similarity=0.150  Sum_probs=63.0

Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHH
Q 020976          215 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA  288 (319)
Q Consensus       215 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  288 (319)
                      |.+.+..+...++.......+++.+...+-+++..      ...+-...++.+. .-++++++.++..=+..|+-||..+
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence            34445555555666556667777777777666533      1111122233222 3356678877777777888888888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          289 QKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       289 ~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      +..+++.+.+.+++.+|.++...|..
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            88888888888888888777666543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.09  E-value=0.58  Score=34.36  Aligned_cols=79  Identities=11%  Similarity=0.071  Sum_probs=56.9

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCcccHHHHHHHHHHcCch
Q 020976           55 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK---GYTFDGFGYCTVIAAFVKIGRL  131 (319)
Q Consensus        55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~  131 (319)
                      ..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+.   +-.+|+..+..|...+.+.|++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            334454 678888888877665546666666665555 67888888888877653   2367788899999999999998


Q ss_pred             HHHH
Q 020976          132 KEAT  135 (319)
Q Consensus       132 ~~a~  135 (319)
                      +.|-
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            8874

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.01  E-value=0.071  Score=26.89  Aligned_cols=23  Identities=9%  Similarity=0.073  Sum_probs=12.5

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHH
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRG   35 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~   35 (319)
                      |+.|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44555555555555555555555

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.73  E-value=0.049  Score=38.05  Aligned_cols=85  Identities=18%  Similarity=0.190  Sum_probs=44.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 020976          156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK  235 (319)
Q Consensus       156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  235 (319)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.+....+++.       .+..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence            3445555566666666666666554444555666666666666555665555541       111222344555555666


Q ss_pred             HHHHHHHHHhhc
Q 020976          236 IDHAINVFESME  247 (319)
Q Consensus       236 ~~~a~~~~~~~~  247 (319)
                      +++|.-++.++.
T Consensus        86 ~~~a~~Ly~~~~   97 (143)
T PF00637_consen   86 YEEAVYLYSKLG   97 (143)
T ss_dssp             HHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcc
Confidence            666666555544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.68  E-value=2.9  Score=36.89  Aligned_cols=275  Identities=14%  Similarity=0.098  Sum_probs=157.4

Q ss_pred             hHHHHHHHHHHHhCCCCCCHHHHHHHH--HH-HHhcCChhHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHhcC-
Q 020976           26 TDNALRMFRGLQKHGFVPELVTYNILI--KG-LCKAGRLRTARWILKELGD-------SGHAPNAITYTTIMKCCFRNR-   94 (319)
Q Consensus        26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-   94 (319)
                      ...|.++++.....|.. ........+  .+ +....|.+.|..+|+....       .|   ......-+..+|.+.. 
T Consensus       228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence            46788888888776532 222222222  22 4466789999999998876       44   3445667777777643 


Q ss_pred             ----ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH----hcCC
Q 020976           95 ----KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC----KEGK  165 (319)
Q Consensus        95 ----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~  165 (319)
                          +.+.|..++.+....| .|+.......+..... ..+...|.++|......|..   ..+-.+..+|.    -..+
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERN  379 (552)
T ss_pred             CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCC
Confidence                5677999999988887 4455433332222222 24678999999999988743   33333333332    2457


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH---Hh----cCCHHH
Q 020976          166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL---GK----DGKIDH  238 (319)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~~~  238 (319)
                      ...|..++.+.-+.| .|....-...+..+.. +.++.+...+..+.+.+.+.....-..+....   ..    ..+.+.
T Consensus       380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~  457 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER  457 (552)
T ss_pred             HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence            889999999999887 3332222233333444 77777777777777665432211111111111   11    124556


Q ss_pred             HHHHHHhhccC-CchhHHHHHHHHHcc----CChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 020976          239 AINVFESMEVK-DSFTYSSMVHNLCKA----KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQ  309 (319)
Q Consensus       239 a~~~~~~~~~~-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~  309 (319)
                      +...+.+.... +......+...|..-    .+++.|...+......+    ....-.+...+-.    .+ ...|.+++
T Consensus       458 ~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~  532 (552)
T KOG1550|consen  458 AFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYY  532 (552)
T ss_pred             HHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHH
Confidence            66666655544 555555555555432    34677777777766654    2222223322211    23 57777777


Q ss_pred             HHHHhh
Q 020976          310 SKIRMA  315 (319)
Q Consensus       310 ~~~~~~  315 (319)
                      ++..+.
T Consensus       533 ~~~~~~  538 (552)
T KOG1550|consen  533 DQASEE  538 (552)
T ss_pred             HHHHhc
Confidence            776553

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.63  E-value=1.4  Score=33.12  Aligned_cols=220  Identities=17%  Similarity=0.038  Sum_probs=117.2

Q ss_pred             CChhHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCcccHHHHHHHHHHcCchHHHHH
Q 020976           59 GRLRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAAFVKIGRLKEATD  136 (319)
Q Consensus        59 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~  136 (319)
                      +....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            3444444444444443211 12345555555666666666666666655531 113334445555555556666666666


Q ss_pred             HHHHHHhCCCccChhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCcHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976          137 YMEQMVTDGVQLDIVSYNTLIN-LYCKEGKLEAAYLLLDEMEKQGF--ECDKYTHTILIDGLCKAGNIKGARLHLEYMNK  213 (319)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  213 (319)
                      .+.........+ ......... .+...|+++.+...+.+......  ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            666666542222 112222222 56677777777777777644211  11222333333335556677777777777666


Q ss_pred             cCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc---hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          214 IGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       214 ~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      .. +. ....+..+...+...++++.|...+.......+   ..+......+...+..+.+...+.+....
T Consensus       196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            43 22 345566666666667777777777766655433   23344444444555667777777666654

>PRK11906 transcriptional regulator; Provisional

Probab=94.60  E-value=2.4  Score=35.64  Aligned_cols=112  Identities=9%  Similarity=0.054  Sum_probs=72.7

Q ss_pred             chHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHH
Q 020976          130 RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE  209 (319)
Q Consensus       130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  209 (319)
                      +..+|.++-+...+.+ +.|......+..+....++++.|..+|++....++. ...+|......+.-.|+.++|.+.++
T Consensus       319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4456667777777764 346777777777777888899999999988876433 33455555555566889999999888


Q ss_pred             HHHhcCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976          210 YMNKIGFDSNLE---AYNCIVDRLGKDGKIDHAINVFESM  246 (319)
Q Consensus       210 ~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~  246 (319)
                      +..+.  .|...   .....++.|+ ....+.|..++-+-
T Consensus       397 ~alrL--sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  433 (458)
T PRK11906        397 KSLQL--EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE  433 (458)
T ss_pred             HHhcc--CchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence            87664  34332   2222333443 34567777777543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.52  E-value=0.17  Score=24.81  Aligned_cols=29  Identities=17%  Similarity=-0.049  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          288 AQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      .+..+...+...|++++|++.+++..+..
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            34445555555555555555555554443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=0.33  Score=38.09  Aligned_cols=103  Identities=15%  Similarity=0.207  Sum_probs=61.1

Q ss_pred             CCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh
Q 020976            5 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH---GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI   81 (319)
Q Consensus         5 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   81 (319)
                      |.+.++.+-..++..-....++++++..+-.++..   -..|+... .+.++.+. .-++++++.++..=...|+-||..
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence            44455555555666656666777777766665432   01112111 22223222 235667777777777777777777


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           82 TYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      +++.+|+.+.+.+++.+|.++...|...
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            7777777777777777777776666544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.49  E-value=1.5  Score=32.92  Aligned_cols=221  Identities=18%  Similarity=0.043  Sum_probs=154.2

Q ss_pred             cCChhHHHHHHHHHHhCCCC-CCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHHHhcCCHHHHH
Q 020976           93 NRKYKLGLEILSAMKRKGYT-FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAY  170 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~  170 (319)
                      .+....+...+......... ............+...+++..+...+...... ........+......+...+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            34555666666666554321 13466777778888899999999888887752 23445666777788888889999999


Q ss_pred             HHHHHHHHcCCCCcHHhHHHHHH-HHhccCChhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          171 LLLDEMEKQGFECDKYTHTILID-GLCKAGNIKGARLHLEYMNKIGF--DSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      +.+.........+ ......... .+...|+++.+...+........  ......+......+...++.+.+...+....
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            9999988764443 222233333 68899999999999999865321  1223344444444677889999999998877


Q ss_pred             cCC----chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          248 VKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       248 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      ...    ...+..+...+...++++.+...+......... ....+......+...|..+++...+.+....
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            553    455778888888889999999999998875222 2445555555555777899998888776554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.31  E-value=1.4  Score=31.64  Aligned_cols=121  Identities=16%  Similarity=0.074  Sum_probs=48.0

Q ss_pred             HcCchHHHHHHHHHHHhCCCccChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH-hHHHH--HHHHhccCChh
Q 020976          127 KIGRLKEATDYMEQMVTDGVQLDIV-SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY-THTIL--IDGLCKAGNIK  202 (319)
Q Consensus       127 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~  202 (319)
                      +.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.....|... -...+  .-.+...|.++
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            3344555555555555543221110 11112223344555555555555554433222221 11111  11123445555


Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          203 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      .+..-.+.+...+-+.....-..|.-+-.+.|++..|...|..+.
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia  194 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA  194 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence            554444444333222222222334444445555555555555444

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=94.22  E-value=0.44  Score=30.15  Aligned_cols=45  Identities=24%  Similarity=0.366  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976           63 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK  107 (319)
Q Consensus        63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  107 (319)
                      ++.+-++.+....+.|++....+.+++|-+.+|+..|.++++.++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444455555555555555555555555555555444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.09  E-value=0.085  Score=26.22  Aligned_cols=32  Identities=13%  Similarity=0.001  Sum_probs=22.6

Q ss_pred             HHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHH
Q 020976          274 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK  306 (319)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  306 (319)
                      |++.++.. +-+...|..+...|...|++++|+
T Consensus         2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34455543 236788888888888888888875

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.06  E-value=3.3  Score=35.13  Aligned_cols=76  Identities=14%  Similarity=0.121  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHhCCCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHH
Q 020976          118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILID  193 (319)
Q Consensus       118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~  193 (319)
                      -..+..++.+.|+.++|.+.++++.+.... ........++.++...+.+.++..++.+..+...+. -...|+..+-
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            345666777889999999999988765211 234467788899999999999998888875432221 2334555443

The molecular function of this protein is uncertain.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.92  E-value=4.7  Score=36.48  Aligned_cols=217  Identities=14%  Similarity=0.107  Sum_probs=124.7

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHH----hCC----------C--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQ----KHG----------F--VPELVTYNILIKGLCKAGRLRTARWILKELGDS   74 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   74 (319)
                      .+.+.++.+|...+++-.-..+++.+.    ..+          .  .........-+..+.+..-++-|..+-+.-.  
T Consensus       284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~--  361 (933)
T KOG2114|consen  284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQH--  361 (933)
T ss_pred             cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC--
Confidence            345667777777776544333333322    211          0  0112234456666677777777776654432  


Q ss_pred             CCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhh
Q 020976           75 GHAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS  152 (319)
Q Consensus        75 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (319)
                       ..++  .........-+.+.|++++|...|-+-... +.|     ..++.-|........-..+++.+.+.|+. +...
T Consensus       362 -~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dh  433 (933)
T KOG2114|consen  362 -LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDH  433 (933)
T ss_pred             -CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchh
Confidence             2222  122333344455778888888777665432 122     24455666666777777788888887764 5666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK  232 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  232 (319)
                      -..|+.+|.+.++.++..++.+... .|..  ..-....+..+.+.+-.++|..+-.....     +......+   +..
T Consensus       434 ttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~  502 (933)
T KOG2114|consen  434 TTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LED  502 (933)
T ss_pred             HHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHH
Confidence            7788888999888888877776544 2211  11234556666666666777655443322     22333333   345


Q ss_pred             cCCHHHHHHHHHhhcc
Q 020976          233 DGKIDHAINVFESMEV  248 (319)
Q Consensus       233 ~~~~~~a~~~~~~~~~  248 (319)
                      .+++++|.+.+..++-
T Consensus       503 ~~ny~eAl~yi~slp~  518 (933)
T KOG2114|consen  503 LHNYEEALRYISSLPI  518 (933)
T ss_pred             hcCHHHHHHHHhcCCH
Confidence            6778888888877653

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.90  E-value=3.3  Score=34.63  Aligned_cols=51  Identities=14%  Similarity=-0.063  Sum_probs=40.2

Q ss_pred             HHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          261 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      +...|++.++.-.-..+.+  +.|++.+|..+.-+.....++++|+.++..+.
T Consensus       472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            4567888888766555544  67899999988888889999999999987753

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.79  E-value=0.099  Score=25.98  Aligned_cols=22  Identities=23%  Similarity=0.191  Sum_probs=12.2

Q ss_pred             CHHHHHHHHHHHHhcCChhHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTAR   65 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~   65 (319)
                      +...|+.+...|...|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            4555555555555555555553

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.74  E-value=1.7  Score=30.74  Aligned_cols=51  Identities=10%  Similarity=-0.061  Sum_probs=22.6

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccH-HHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDGFGY-CTVIAAFVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~  144 (319)
                      +.++.+.+..++..+...  .|..... ..-...+.+.|++.+|..+|+++...
T Consensus        22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            344555555555555443  2222111 11222344455555555555555443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=93.72  E-value=1.1  Score=28.69  Aligned_cols=47  Identities=23%  Similarity=0.354  Sum_probs=23.2

Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           63 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      +..+-++.+....+.|++......+++|-+.+++..|.++++.++.+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555443

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.71  E-value=3.8  Score=34.62  Aligned_cols=121  Identities=8%  Similarity=0.004  Sum_probs=82.1

Q ss_pred             HhcCChhHHHHH-HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976           91 FRNRKYKLGLEI-LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA  169 (319)
Q Consensus        91 ~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  169 (319)
                      ...|+...|-+- +..+...  +-++.........+...|+++.+...+...... +.....+...+++...+.|++++|
T Consensus       300 ~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence            345665555443 3334333  334444444445667789999999888776654 334566788889999999999999


Q ss_pred             HHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976          170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG  215 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  215 (319)
                      ..+-..|....++ ++.............|-++++...|+++...+
T Consensus       377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            9999988877666 44444444444455678899999999887765

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=93.69  E-value=1.2  Score=28.67  Aligned_cols=79  Identities=16%  Similarity=0.192  Sum_probs=51.4

Q ss_pred             chHhHHHHHHHHhhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTD--NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI   86 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   86 (319)
                      +-..|..--..+....+.+  +..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.. ..+....|..+
T Consensus         7 t~eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~   85 (108)
T PF02284_consen    7 TDEEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYI   85 (108)
T ss_dssp             -HHHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHH
T ss_pred             CHHHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHH
Confidence            3344555445555544433  56677778888888999999999999999999999999999999864 22233366666


Q ss_pred             HH
Q 020976           87 MK   88 (319)
Q Consensus        87 ~~   88 (319)
                      ++
T Consensus        86 lq   87 (108)
T PF02284_consen   86 LQ   87 (108)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=93.58  E-value=0.47  Score=30.02  Aligned_cols=45  Identities=13%  Similarity=0.003  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      ++.+-+..+......|++....+.+++|.+.+++.-|.++++-++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            444555555555666666666666666666666666666666555

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.43  E-value=2.9  Score=32.40  Aligned_cols=149  Identities=9%  Similarity=0.027  Sum_probs=67.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH---cCC--CCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc-----CCCCChhhHHH
Q 020976          156 LINLYCKEGKLEAAYLLLDEMEK---QGF--ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI-----GFDSNLEAYNC  225 (319)
Q Consensus       156 l~~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~  225 (319)
                      ++....+.+++++..+.+.++..   +.+  .-+..+.+.++.....+.+.+....+++.-.+.     +-+.-..|-..
T Consensus        71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK  150 (440)
T KOG1464|consen   71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK  150 (440)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence            44455555555555555555431   111  113334444444444444444333333322111     11111223344


Q ss_pred             HHHHHHhcCCHHHHHHHHHhhccC---------------CchhHHHHHHHHHccCChhHHHHHHHHHHHc-CCccCHHHH
Q 020976          226 IVDRLGKDGKIDHAINVFESMEVK---------------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-GVRILKSAQ  289 (319)
Q Consensus       226 l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~  289 (319)
                      +...|...|.+....++++++...               -...|..-|+.|..+.+-.....++++.+.- .--|.+...
T Consensus       151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm  230 (440)
T KOG1464|consen  151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM  230 (440)
T ss_pred             HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence            555566666666666666555421               1235666666676666666666666655432 122344333


Q ss_pred             HHHHHHH-----HhcCCHHHH
Q 020976          290 KAVVDGL-----RHSGCRREA  305 (319)
Q Consensus       290 ~~l~~~~-----~~~g~~~~a  305 (319)
                      . +|+-|     .+.|.+++|
T Consensus       231 G-vIRECGGKMHlreg~fe~A  250 (440)
T KOG1464|consen  231 G-VIRECGGKMHLREGEFEKA  250 (440)
T ss_pred             h-HHHHcCCccccccchHHHH
Confidence            2 23332     346666665

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.41  E-value=0.25  Score=24.27  Aligned_cols=27  Identities=11%  Similarity=0.138  Sum_probs=13.0

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976          253 TYSSMVHNLCKAKRLPSASKLLLSCLK  279 (319)
Q Consensus       253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  279 (319)
                      +|..+...|...|++++|+..|++.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344445555555555555555555444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.27  E-value=2.1  Score=30.32  Aligned_cols=18  Identities=28%  Similarity=0.363  Sum_probs=8.5

Q ss_pred             HhcCChhHHHHHHHHHhh
Q 020976           56 CKAGRLRTARWILKELGD   73 (319)
Q Consensus        56 ~~~~~~~~a~~~~~~~~~   73 (319)
                      ...|++.+|.++|+++..
T Consensus        55 i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   55 IVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HHhCCHHHHHHHHHHHhc
Confidence            344445555555544433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.17  E-value=0.28  Score=25.37  Aligned_cols=27  Identities=15%  Similarity=0.199  Sum_probs=14.6

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHH
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQ   37 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~   37 (319)
                      .+++.+...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            345555555555566666555555543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.80  E-value=5.2  Score=33.59  Aligned_cols=138  Identities=16%  Similarity=0.249  Sum_probs=84.4

Q ss_pred             HhhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH--HH
Q 020976           20 LCKNRYTDNALRMFRGLQKHGFVPEL------VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC--CF   91 (319)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~   91 (319)
                      +-+++++++|.++|.++-+. ...++      ..-+.++++|.. ++.+.....+..+.+.  .| ...|-.+..+  +.
T Consensus        16 Lqkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y   90 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY   90 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence            45678999999999888664 22222      223566677754 4566666666666553  22 3334444443  34


Q ss_pred             hcCChhHHHHHHHHHHhC--CCCC------------CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCC----ccChhhH
Q 020976           92 RNRKYKLGLEILSAMKRK--GYTF------------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV----QLDIVSY  153 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~  153 (319)
                      +.+++.+|++.+..-...  +..+            |-..=+..++++...|.+.++..+++++...-.    .-+..+|
T Consensus        91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y  170 (549)
T PF07079_consen   91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY  170 (549)
T ss_pred             HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence            678888888887766554  2221            111123456677888999999888888776522    3577778


Q ss_pred             HHHHHHHHh
Q 020976          154 NTLINLYCK  162 (319)
Q Consensus       154 ~~l~~~~~~  162 (319)
                      +.++-.+.+
T Consensus       171 d~~vlmlsr  179 (549)
T PF07079_consen  171 DRAVLMLSR  179 (549)
T ss_pred             HHHHHHHhH
Confidence            776555544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.70  E-value=4  Score=32.05  Aligned_cols=61  Identities=8%  Similarity=0.088  Sum_probs=29.1

Q ss_pred             cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcHHhHHHHHHHHhccCChhHHHHHH
Q 020976          148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILIDGLCKAGNIKGARLHL  208 (319)
Q Consensus       148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  208 (319)
                      ++..+...++..++..+++.+-.++++..... ++.-|...|..++......|+..-...+.
T Consensus       200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI  261 (292)
T PF13929_consen  200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII  261 (292)
T ss_pred             CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence            34444444555555555555555555444432 33334445555555555555544444443

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.67  E-value=0.075  Score=37.11  Aligned_cols=84  Identities=12%  Similarity=0.154  Sum_probs=48.5

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK   95 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   95 (319)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++..       +..-...+++.|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            45566666777777777777776554455667777777777776666666665511       11222345555555566


Q ss_pred             hhHHHHHHHHH
Q 020976           96 YKLGLEILSAM  106 (319)
Q Consensus        96 ~~~a~~~~~~~  106 (319)
                      ++++.-++.++
T Consensus        86 ~~~a~~Ly~~~   96 (143)
T PF00637_consen   86 YEEAVYLYSKL   96 (143)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHc
Confidence            66665555543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.64  E-value=3  Score=30.55  Aligned_cols=126  Identities=13%  Similarity=0.042  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH--HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH----
Q 020976          151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH--TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN----  224 (319)
Q Consensus       151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----  224 (319)
                      ..|..++.... .+.. +......++...........+  ..+...+...+++++|...++.....   |....+.    
T Consensus        55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~  129 (207)
T COG2976          55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA  129 (207)
T ss_pred             HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence            34444444443 2222 444444555544222122222  22345567778888888888776643   2223332    


Q ss_pred             -HHHHHHHhcCCHHHHHHHHHhhccC--CchhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 020976          225 -CIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG  281 (319)
Q Consensus       225 -~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  281 (319)
                       .|.+.....|.+++|...++....+  .......-...+...|+-++|..-|.+.+..+
T Consensus       130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence             3445566788888888888877766  33334445667788888888888888887765

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=92.57  E-value=2.5  Score=29.40  Aligned_cols=100  Identities=14%  Similarity=0.095  Sum_probs=69.8

Q ss_pred             HHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhhCCC-----CCChhhHHHHHHHHHhcCC-hhHHHHHHHH
Q 020976           34 RGLQKHGFVPELV--TYNILIKGLCKAGRLRTARWILKELGDSGH-----APNAITYTTIMKCCFRNRK-YKLGLEILSA  105 (319)
Q Consensus        34 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~  105 (319)
                      ..|.+.+..++..  ..+.++.-....+++.....+++.+.....     ..+...|+.++++..+... ---+..+|..
T Consensus        26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~  105 (145)
T PF13762_consen   26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF  105 (145)
T ss_pred             HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence            3455555555543  346777777777888888887777643111     2367789999999876665 4557778888


Q ss_pred             HHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976          106 MKRKGYTFDGFGYCTVIAAFVKIGRLKE  133 (319)
Q Consensus       106 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~  133 (319)
                      +++.+.++++..|..++.++.+-...+.
T Consensus       106 Lk~~~~~~t~~dy~~li~~~l~g~~~~~  133 (145)
T PF13762_consen  106 LKKNDIEFTPSDYSCLIKAALRGYFHDS  133 (145)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence            8888889999999999988887544443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.43  E-value=7.3  Score=34.42  Aligned_cols=177  Identities=12%  Similarity=0.022  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHhCCCccChhhHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------cCCCCcHHhHHHHHHHHhcc
Q 020976          131 LKEATDYMEQMVTDGVQLDIVSYNTLINL-----YCKEGKLEAAYLLLDEMEK-------QGFECDKYTHTILIDGLCKA  198 (319)
Q Consensus       131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~  198 (319)
                      ...+.++++...+.|   +...-..+..+     +....+.+.|+.+|....+       .+   .......+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            467788888877765   22222223222     3456788888888888866       44   233455566666554


Q ss_pred             C-----ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHhhccC-CchhHHHHHHHHH----ccCCh
Q 020976          199 G-----NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK-DGKIDHAINVFESMEVK-DSFTYSSMVHNLC----KAKRL  267 (319)
Q Consensus       199 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~  267 (319)
                      .     +.+.|..++....+.| .|+...+...+..... ..+...|.++|...... .+..+-.+..+|.    ...+.
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~  380 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL  380 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence            3     5667888888888777 3444333322222222 24678888888877655 4444444443333    23466


Q ss_pred             hHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       268 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      +.|..++++..+.| .|....-...+..+.. +.++.+.-.+..+.+.|
T Consensus       381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            78888888888887 3332222333334444 77777766666665554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.32  E-value=0.5  Score=24.38  Aligned_cols=28  Identities=21%  Similarity=0.215  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          287 SAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       287 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      .+++.+...|...|++++|..++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4567777777777777777777776544

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=92.06  E-value=8.7  Score=34.46  Aligned_cols=43  Identities=12%  Similarity=0.111  Sum_probs=30.0

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 020976           15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA   58 (319)
Q Consensus        15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   58 (319)
                      .+|..|.++|++++|.++....... .......+...+..|...
T Consensus       116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence            4778899999999999999555443 344556667777777664

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.02  E-value=0.71  Score=22.52  Aligned_cols=28  Identities=18%  Similarity=-0.077  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          288 AQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      +|..+...|...|++++|.+.|++..+.
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3444555555555555555555554443

...

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.02  E-value=11  Score=35.71  Aligned_cols=80  Identities=14%  Similarity=0.054  Sum_probs=39.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcC
Q 020976          157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL--EAYNCIVDRLGKDG  234 (319)
Q Consensus       157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~  234 (319)
                      ...+.....+++|.-.|+..-+         ....+.+|...|+|.+|..+..++...   .+.  .+-..|+..+...+
T Consensus       946 a~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen  946 ADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred             HHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcc
Confidence            3334445555555555544321         123355566666666666665554321   111  11244555556666


Q ss_pred             CHHHHHHHHHhhcc
Q 020976          235 KIDHAINVFESMEV  248 (319)
Q Consensus       235 ~~~~a~~~~~~~~~  248 (319)
                      ++-+|-++..+...
T Consensus      1014 kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYLS 1027 (1265)
T ss_pred             cchhHHHHHHHHhc
Confidence            66666666555443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.01  E-value=0.56  Score=22.95  Aligned_cols=27  Identities=11%  Similarity=0.130  Sum_probs=14.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQK   38 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~   38 (319)
                      +|..+...+...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.00  E-value=2.1  Score=31.60  Aligned_cols=80  Identities=16%  Similarity=0.027  Sum_probs=53.7

Q ss_pred             HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCcHHhHHHHHHHHhccCC
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GFECDKYTHTILIDGLCKAGN  200 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~  200 (319)
                      .+.+.|+ +.|.+.|-.+...+.--++.....+...| ...+.+++..++-...+.   +-.+|+..+.+|+..+.+.|+
T Consensus       116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            3444444 56777777777665444555444444444 467788888888777643   336678888888888888888


Q ss_pred             hhHHH
Q 020976          201 IKGAR  205 (319)
Q Consensus       201 ~~~a~  205 (319)
                      ++.|.
T Consensus       194 ~e~AY  198 (203)
T PF11207_consen  194 YEQAY  198 (203)
T ss_pred             hhhhh
Confidence            88775

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.73  E-value=0.46  Score=22.95  Aligned_cols=24  Identities=13%  Similarity=0.012  Sum_probs=13.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          292 VVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       292 l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      +..++.+.|++++|.+.|+++.+.
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHH
Confidence            444555556666666666655544

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.54  E-value=2.1  Score=32.03  Aligned_cols=77  Identities=19%  Similarity=0.238  Sum_probs=51.3

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG--HAPNAITYTTIMKC   89 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~   89 (319)
                      |.+..++.+.+.+.+++|+...++-.+..+ .|..+-..++..++-.|++++|..-++-.-...  ..+....|..++++
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            445566777788888888888777666533 256666777888888888888877766655421  22345566666654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.53  E-value=4.7  Score=30.26  Aligned_cols=28  Identities=7%  Similarity=0.114  Sum_probs=13.2

Q ss_pred             ccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976          116 FGYCTVIAAFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus       116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~  143 (319)
                      .+||-+.-.+...|+++.|.+.|+...+
T Consensus       100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E  127 (297)
T COG4785         100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE  127 (297)
T ss_pred             HHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence            3444444444444555555554444444

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=91.50  E-value=8.2  Score=33.05  Aligned_cols=179  Identities=9%  Similarity=0.020  Sum_probs=110.2

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      |-...-+++..+..+.+++-...+..+|...|  .+-..|..++..|... ..+.-..+++++.+..+. |+..-..|..
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            44556677777777777777777888887753  3667777888888777 556777777777775443 4444455555


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccChhhHHHHHHHHHh
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFD-----GFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCK  162 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~  162 (319)
                      .|-+ ++.+.+..+|.++...=++..     ...|.-+....  ..+.+..+.+...+... |...-...+.-+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            4444 677777777777665422211     12333333211  24556666666666543 333445556666677788


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 020976          163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL  195 (319)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (319)
                      ..++.+|++++..+.+..-+ |...-..++.-+
T Consensus       218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l  249 (711)
T COG1747         218 NENWTEAIRILKHILEHDEK-DVWARKEIIENL  249 (711)
T ss_pred             ccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence            88899999999887766433 444444444443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.38  E-value=1.7  Score=31.95  Aligned_cols=87  Identities=17%  Similarity=0.051  Sum_probs=60.9

Q ss_pred             HHHhccCChhHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHH---HHHHHcc
Q 020976          193 DGLCKAGNIKGARLHLEYMNKIGFDSNL-----EAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSM---VHNLCKA  264 (319)
Q Consensus       193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~  264 (319)
                      .-+...|++++|..-|...++.- ++..     ..|..-..++.+.+.++.|+.-.......++.--.++   ..+|.+.
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            34567899999999999888762 3322     2334444566778888888887777776655433333   3467788


Q ss_pred             CChhHHHHHHHHHHHc
Q 020976          265 KRLPSASKLLLSCLKS  280 (319)
Q Consensus       265 ~~~~~a~~~~~~~~~~  280 (319)
                      ..+++|++-++++++.
T Consensus       182 ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  182 EKYEEALEDYKKILES  197 (271)
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            8899999999988875

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.24  E-value=7.3  Score=31.94  Aligned_cols=192  Identities=10%  Similarity=0.018  Sum_probs=100.3

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC---C-CChhhHHHHHHHHH
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH---A-PNAITYTTIMKCCF   91 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-~~~~~~~~l~~~~~   91 (319)
                      ...+.-+.|+++...+........  .++...+..+...  ..++++++...+++....-.   . .....|........
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~   79 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV   79 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            356777889988865555554432  2355566655544  78899998888887754210   0 11222333333333


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-----cCchH---HHHHHHHHHHh--CCCccChhhHHHHHHHHH
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-----IGRLK---EATDYMEQMVT--DGVQLDIVSYNTLINLYC  161 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~---~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~  161 (319)
                      +...+.+..++.+-.....  .+......++.....     .++++   ..+.+-..+..  ........+|..++..+.
T Consensus        80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR  157 (352)
T PF02259_consen   80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR  157 (352)
T ss_pred             HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            3333333333332221110  001112222222111     11111   11111111111  112334567788888899


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCC---cHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976          162 KEGKLEAAYLLLDEMEKQGFEC---DKYTHTILIDGLCKAGNIKGARLHLEYMNK  213 (319)
Q Consensus       162 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  213 (319)
                      +.|.++.|...+..+...+...   ++.....-++..-..|+..+|...++...+
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999998887654221   334444556666778888899888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.21  E-value=0.4  Score=21.96  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=14.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHH
Q 020976          289 QKAVVDGLRHSGCRREAKKIQS  310 (319)
Q Consensus       289 ~~~l~~~~~~~g~~~~a~~~~~  310 (319)
                      ...+..++...|++++|..+++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            3455666667777777766654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.19  E-value=0.69  Score=24.58  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=17.0

Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCC
Q 020976          257 MVHNLCKAKRLPSASKLLLSCLKSGV  282 (319)
Q Consensus       257 l~~~~~~~~~~~~a~~~~~~~~~~~~  282 (319)
                      +..+|...|+.+.|.+++++....|-
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~~~   30 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEEGD   30 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence            45667777777777777777665443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.01  E-value=4.9  Score=29.54  Aligned_cols=128  Identities=12%  Similarity=-0.024  Sum_probs=81.5

Q ss_pred             HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHhhccC-Cch-----hHHH
Q 020976          185 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY--NCIVDRLGKDGKIDHAINVFESMEVK-DSF-----TYSS  256 (319)
Q Consensus       185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-----~~~~  256 (319)
                      ...|..++.... .+.. +.....+.+...+-.....++  ..+...+...|++++|...++..... .-.     .--.
T Consensus        54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR  131 (207)
T COG2976          54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR  131 (207)
T ss_pred             HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            344555555543 3333 444445555543211111222  23455678899999999999976643 222     2234


Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          257 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      +.+.....|.+++|+..++.....+.  .......-.+.+...|+.++|+.-|++..+.+
T Consensus       132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            56677889999999999987665433  23334555678999999999999999877664

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=90.81  E-value=2.9  Score=31.31  Aligned_cols=75  Identities=19%  Similarity=0.171  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCcHHhHHHHHH
Q 020976          118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF--ECDKYTHTILID  193 (319)
Q Consensus       118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~  193 (319)
                      .+.-++.+.+.+.+.+++...++-.+.+ +.+......+++.++-.|+|++|..-++-.-+...  .+...+|..++.
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            4445566667777777777777666652 34555666677777777777777766665554322  223345555554

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=90.77  E-value=3  Score=26.75  Aligned_cols=80  Identities=11%  Similarity=0.028  Sum_probs=48.6

Q ss_pred             ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976          200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK  279 (319)
Q Consensus       200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  279 (319)
                      ..++|..+-+-+...+-. ...+-..-+..+.+.|++++|..+.+....||...|.++-.  .+.|-.+++..-+.++..
T Consensus        20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~   96 (115)
T TIGR02508        20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA   96 (115)
T ss_pred             HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence            346666666666554311 22222223445677888888888888887777777766543  355666666666666666


Q ss_pred             cCC
Q 020976          280 SGV  282 (319)
Q Consensus       280 ~~~  282 (319)
                      .|-
T Consensus        97 sg~   99 (115)
T TIGR02508        97 SGD   99 (115)
T ss_pred             CCC
Confidence            543

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.74  E-value=0.89  Score=22.07  Aligned_cols=26  Identities=8%  Similarity=0.111  Sum_probs=12.7

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHh
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQK   38 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~   38 (319)
                      |..+...+...|++++|++.|++..+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            44444555555555555555555444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.45  E-value=1.2  Score=27.05  Aligned_cols=47  Identities=11%  Similarity=-0.051  Sum_probs=34.6

Q ss_pred             ccCChhHHHHHHHHHHHcCCccC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 020976          263 KAKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREAKKIQ  309 (319)
Q Consensus       263 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~  309 (319)
                      ..++.++|+..|...++.-..|.  ..++..++.+++..|++.+++++.
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777888888888887643332  246677888888999988887764

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.33  E-value=4.4  Score=29.94  Aligned_cols=91  Identities=14%  Similarity=0.056  Sum_probs=42.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCc----HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 020976          160 YCKEGKLEAAYLLLDEMEKQGFECD----KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK  235 (319)
Q Consensus       160 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  235 (319)
                      +..+|++++|..-|...+..-+..+    ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+...
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek  183 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK  183 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence            4455556666555555554321111    1223333344455555555555555555443 1112222223345555566


Q ss_pred             HHHHHHHHHhhccCCc
Q 020976          236 IDHAINVFESMEVKDS  251 (319)
Q Consensus       236 ~~~a~~~~~~~~~~~~  251 (319)
                      +++|++-+..+...+|
T Consensus       184 ~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  184 YEEALEDYKKILESDP  199 (271)
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            6666666665555443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.27  E-value=9  Score=31.38  Aligned_cols=192  Identities=14%  Similarity=0.126  Sum_probs=99.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCcccHHHHHHHHH
Q 020976           51 LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY----TFDGFGYCTVIAAFV  126 (319)
Q Consensus        51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~  126 (319)
                      ...+..+.|+++...+........  .++...+..+...  +.++++++...++.....-.    ......|........
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~   79 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV   79 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            356677888998866655555432  2344555555433  77888888888877764310    112233444444444


Q ss_pred             HcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh-cCCHHHHHHHHHHHHH---c--C----CCCcHHhHHHHHHHHh
Q 020976          127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK-EGKLEAAYLLLDEMEK---Q--G----FECDKYTHTILIDGLC  196 (319)
Q Consensus       127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~---~--~----~~~~~~~~~~l~~~~~  196 (319)
                      +...+.+..++.+-.....  .+......++..... ......-...++.+..   .  +    ......++..++..+.
T Consensus        80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR  157 (352)
T PF02259_consen   80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR  157 (352)
T ss_pred             HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            4444444444443332211  112223333332221 1111112222222221   0  1    2234456777777778


Q ss_pred             ccCChhHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 020976          197 KAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVFESMEV  248 (319)
Q Consensus       197 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  248 (319)
                      +.|.++.|...+..+...+...   .+.....-+...-..|+..+|...++....
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888888888877777643111   334444455666677777788777766554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=90.10  E-value=7.9  Score=30.48  Aligned_cols=135  Identities=8%  Similarity=0.155  Sum_probs=87.4

Q ss_pred             cCCHHHHHHHHHHHHH-cCCCCcHHhHHHHHHHHhc-cC-ChhHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHH
Q 020976          163 EGKLEAAYLLLDEMEK-QGFECDKYTHTILIDGLCK-AG-NIKGARLHLEYMNKI-GFDSNLEAYNCIVDRLGKDGKIDH  238 (319)
Q Consensus       163 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~  238 (319)
                      +....+|+.+|+.... ..+--|......+++.... .+ ......++.+.+... +-.++..+...++..++..+++..
T Consensus       141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k  220 (292)
T PF13929_consen  141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK  220 (292)
T ss_pred             hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence            3445667777763221 2234466677777776654 22 333344444555433 346777888889999999999999


Q ss_pred             HHHHHHhhccC-----CchhHHHHHHHHHccCChhHHHHHHHH-----HHHcCCccCHHHHHHHHHHHH
Q 020976          239 AINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLS-----CLKSGVRILKSAQKAVVDGLR  297 (319)
Q Consensus       239 a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~  297 (319)
                      -.++++.....     |...|..+|......|+..-...+..+     +.+.|+..+...-..+-..+.
T Consensus       221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~  289 (292)
T PF13929_consen  221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK  289 (292)
T ss_pred             HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence            99999875533     888999999999999997766665544     233456666655555544443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.90  E-value=5.1  Score=28.00  Aligned_cols=50  Identities=10%  Similarity=-0.027  Sum_probs=21.6

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976           93 NRKYKLGLEILSAMKRKGYTFDG-FGYCTVIAAFVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  144 (319)
                      .++.+++..+++.|.-.  .|+. ..-..-...+...|++++|..+|+++.+.
T Consensus        23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            44555555555555433  1211 11111122334455555555555555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK09687 putative lyase; Provisional

Probab=89.10  E-value=9.9  Score=30.18  Aligned_cols=234  Identities=12%  Similarity=-0.038  Sum_probs=139.7

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCCcccH
Q 020976           43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY----KLGLEILSAMKRKGYTFDGFGY  118 (319)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~  118 (319)
                      +|.......+.++...|. +.+...+..+..   .+|...-...+.++...|+.    .++...+..+...  .++..+-
T Consensus        35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR  108 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR  108 (280)
T ss_pred             CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence            466666677777777765 344444444544   24666666666777777763    4566666666433  4555555


Q ss_pred             HHHHHHHHHcCch-----HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 020976          119 CTVIAAFVKIGRL-----KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID  193 (319)
Q Consensus       119 ~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  193 (319)
                      ...+.++...+..     ..+...+......   ++..+-...+.++.+.++ +.+...+..+.+   .++...-...+.
T Consensus       109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~  181 (280)
T PRK09687        109 ASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF  181 (280)
T ss_pred             HHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence            5666666554321     2333444333332   355666777788877776 456666666665   334455555566


Q ss_pred             HHhccC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHH
Q 020976          194 GLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASK  272 (319)
Q Consensus       194 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  272 (319)
                      ++...+ +...+...+..+..   .++..+-...+.++.+.|+..-.-.+.+.+...+  .....+.++...|.. +|+.
T Consensus       182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p  255 (280)
T PRK09687        182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLP  255 (280)
T ss_pred             HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHH
Confidence            665543 23456666655553   4566777778888888888544444444444333  345677788888874 6888


Q ss_pred             HHHHHHHcCCccCHHHHHHHHHHHH
Q 020976          273 LLLSCLKSGVRILKSAQKAVVDGLR  297 (319)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~~~~  297 (319)
                      .+..+.+.  .||...-...+.+|.
T Consensus       256 ~L~~l~~~--~~d~~v~~~a~~a~~  278 (280)
T PRK09687        256 VLDTLLYK--FDDNEIITKAIDKLK  278 (280)
T ss_pred             HHHHHHhh--CCChhHHHHHHHHHh
Confidence            88888764  347766666666654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.04  E-value=6  Score=27.65  Aligned_cols=50  Identities=12%  Similarity=0.056  Sum_probs=23.4

Q ss_pred             cCChhHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           58 AGRLRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        58 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      .++++++..+++.|.-..+. +...++...  .+...|+|++|..+|+.+.+.
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence            45555555555555442111 112222222  244555666666666655544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.00  E-value=15  Score=32.23  Aligned_cols=102  Identities=20%  Similarity=0.168  Sum_probs=64.3

Q ss_pred             HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG  203 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  203 (319)
                      ...+.|+++.|.++..+..      +..-|..|..+..+.+++..|.+.|.....         |..|+-.+...|+.+.
T Consensus       646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~  710 (794)
T KOG0276|consen  646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG  710 (794)
T ss_pred             hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence            3445677777766655432      455677788888888888888777765542         3455666666777666


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976          204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM  246 (319)
Q Consensus       204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  246 (319)
                      ...+-....+.| ..     |.-.-+|...|+++++.+++.+-
T Consensus       711 l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  711 LAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             HHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence            665555555554 22     22334566778888887777654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.50  E-value=11  Score=32.94  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=94.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF   91 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (319)
                      .-+.+...+.++|-.++|+++-         +|...   -.....+.|+++.|.++..+..      +..-|..|.++..
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al  677 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL  677 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence            4567777777888777777652         23221   2234457799999988876643      5677999999999


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL  171 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  171 (319)
                      ..+++..|.+.|.+...         |..|+-.+...|+-+....+-....+.|.  +    |...-+|...|+++++.+
T Consensus       678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~--~----N~AF~~~~l~g~~~~C~~  742 (794)
T KOG0276|consen  678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK--N----NLAFLAYFLSGDYEECLE  742 (794)
T ss_pred             hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc--c----chHHHHHHHcCCHHHHHH
Confidence            99999999999877653         45677778888887776666666666653  2    333456778899999998


Q ss_pred             HHHHHH
Q 020976          172 LLDEME  177 (319)
Q Consensus       172 ~~~~~~  177 (319)
                      ++..-.
T Consensus       743 lLi~t~  748 (794)
T KOG0276|consen  743 LLISTQ  748 (794)
T ss_pred             HHHhcC
Confidence            886653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.36  E-value=1.7  Score=23.07  Aligned_cols=20  Identities=40%  Similarity=0.521  Sum_probs=8.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 020976          158 NLYCKEGKLEAAYLLLDEME  177 (319)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~  177 (319)
                      .+|...|+.+.|.+++++..
T Consensus         7 ~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         7 RAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHcCChHHHHHHHHHHH
Confidence            34444444444444444443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.21  E-value=1.9  Score=20.93  Aligned_cols=27  Identities=11%  Similarity=0.014  Sum_probs=15.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQK   38 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~   38 (319)
                      +|..+...+...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455555556666666666666655544

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=88.04  E-value=8  Score=28.07  Aligned_cols=28  Identities=4%  Similarity=0.044  Sum_probs=14.1

Q ss_pred             hhHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 020976          267 LPSASKLLLSCLKSGVRILKSAQKAVVDGL  296 (319)
Q Consensus       267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  296 (319)
                      +++|...|++..+.  .|+..+|..-+...
T Consensus        96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   96 FEKATEYFQKAVDE--DPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence            34444555555443  56666666666555

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=87.92  E-value=19  Score=32.04  Aligned_cols=163  Identities=11%  Similarity=0.024  Sum_probs=36.1

Q ss_pred             cHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHh
Q 020976          117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC  196 (319)
Q Consensus       117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (319)
                      .|..-+..+..+++..  ....+.+...-.-.+...-..++..|.+.|-.+.+.++.+.+-..-.  ...-|..-+..+.
T Consensus       374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~  449 (566)
T PF07575_consen  374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFI  449 (566)
T ss_dssp             THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence            3444444433333222  33444444432223444556667777777777777777766554321  2234555556666


Q ss_pred             ccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHH--HHccCChhHHHHHH
Q 020976          197 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHN--LCKAKRLPSASKLL  274 (319)
Q Consensus       197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~  274 (319)
                      ++|+...+..+.+.+.+.....+......++.......           +.......|..+-..  ....+++.+|.+.+
T Consensus       450 ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~-----------~~~~~L~fla~yreF~~~~~~~~~~~Aa~~L  518 (566)
T PF07575_consen  450 RAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPM-----------LLSQRLSFLAKYREFYELYDEGDFREAASLL  518 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchh-----------hhhhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            67776666555555443221111111111211111111           000111111111111  13347778888888


Q ss_pred             HHHHHcCCccCHHHHHHHHH
Q 020976          275 LSCLKSGVRILKSAQKAVVD  294 (319)
Q Consensus       275 ~~~~~~~~~~~~~~~~~l~~  294 (319)
                      -.+.+.+..|...-...+.+
T Consensus       519 v~Ll~~~~~Pk~f~~~LL~d  538 (566)
T PF07575_consen  519 VSLLKSPIAPKSFWPLLLCD  538 (566)
T ss_dssp             --------------------
T ss_pred             HHHHCCCCCcHHHHHHHHHH
Confidence            77777777766544444433

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=87.64  E-value=13  Score=29.80  Aligned_cols=132  Identities=11%  Similarity=0.144  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH--cC----chHHHHHHHHHHHhCCC---ccChhhHHHHHHHHHhcCC-
Q 020976           96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK--IG----RLKEATDYMEQMVTDGV---QLDIVSYNTLINLYCKEGK-  165 (319)
Q Consensus        96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-  165 (319)
                      +++.+.+++.|.+.|+..+..+|-+.......  ..    ...++..+++.|.+.-.   .++-.++..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            44556677777888777776555443333222  11    23567778888877521   1233344444433  2333 


Q ss_pred             ---HHHHHHHHHHHHHcCCCCcHH--hHHHHHHHHhccCC--hhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 020976          166 ---LEAAYLLLDEMEKQGFECDKY--THTILIDGLCKAGN--IKGARLHLEYMNKIGFDSNLEAYNCIVDR  229 (319)
Q Consensus       166 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  229 (319)
                         .+.+..+|+.+.+.|+..+..  ..+.++..+.....  ...+..+++.+.+.|+++....|..+.-.
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence               345666777777766654322  23333333222222  34677778888888877776666655433

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=87.43  E-value=3.1  Score=27.97  Aligned_cols=45  Identities=16%  Similarity=0.030  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          270 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       270 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      ..+-+..+...++.|++......+++|.+.+++.-|.++|+-++-
T Consensus        68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~  112 (149)
T KOG4077|consen   68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD  112 (149)
T ss_pred             HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            333444444555556666666666666666666666666655543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=87.39  E-value=6.6  Score=31.71  Aligned_cols=88  Identities=9%  Similarity=-0.109  Sum_probs=57.6

Q ss_pred             HHhhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976           19 GLCKNRYTDNALRMFRGLQKHGFVP-ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK   97 (319)
Q Consensus        19 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   97 (319)
                      -|.++|++++|++.|......  .| |..++..-..+|.+...+..|..-.+.....+- .-...|..-+.+-...|...
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence            477889999999999887664  34 888888888889998888877776666554210 01233444444444455566


Q ss_pred             HHHHHHHHHHhC
Q 020976           98 LGLEILSAMKRK  109 (319)
Q Consensus        98 ~a~~~~~~~~~~  109 (319)
                      +|.+-++.....
T Consensus       183 EAKkD~E~vL~L  194 (536)
T KOG4648|consen  183 EAKKDCETVLAL  194 (536)
T ss_pred             HHHHhHHHHHhh
Confidence            666666655544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=87.24  E-value=24  Score=32.54  Aligned_cols=222  Identities=13%  Similarity=-0.006  Sum_probs=119.3

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCcc-------cHHHHHH-HHHHcCchHHHHHHHHHHHhC----CCccChhhHHHHH
Q 020976           90 CFRNRKYKLGLEILSAMKRKGYTFDGF-------GYCTVIA-AFVKIGRLKEATDYMEQMVTD----GVQLDIVSYNTLI  157 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~  157 (319)
                      .....++++|..+..++...-..|+..       .++.+-. .....|+++.+.++-+.....    -..+....+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            345678999999888876542222221       2222221 233468889998888877654    2234556677788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHH-----HHHhccCCh--hHHHHHHHHHHhc---CCC---CChhhHH
Q 020976          158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI-----DGLCKAGNI--KGARLHLEYMNKI---GFD---SNLEAYN  224 (319)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~---~~~---~~~~~~~  224 (319)
                      .+..-.|++++|..+..+..+..-..+...+....     ..+...|+.  .+....+......   ..+   +-..+..
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            88888999999999988776543333433332222     234455632  2233333333222   101   1223344


Q ss_pred             HHHHHHHhc-CCHHHHHHHHHhhccC---Cch---hHHHHHHHHHccCChhHHHHHHHHHHHcCCcc----CHHHHHHHH
Q 020976          225 CIVDRLGKD-GKIDHAINVFESMEVK---DSF---TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI----LKSAQKAVV  293 (319)
Q Consensus       225 ~l~~~~~~~-~~~~~a~~~~~~~~~~---~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~  293 (319)
                      .+..++.+. +...++..-+.--...   ...   .+..++......|+.++|...+.++......+    +...-...+
T Consensus       585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v  664 (894)
T COG2909         585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV  664 (894)
T ss_pred             HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence            444444441 1122222222211111   111   22356777888999999999999887653333    222222222


Q ss_pred             H--HHHhcCCHHHHHHHHHH
Q 020976          294 D--GLRHSGCRREAKKIQSK  311 (319)
Q Consensus       294 ~--~~~~~g~~~~a~~~~~~  311 (319)
                      .  .....|+..++.....+
T Consensus       665 ~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         665 KLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             hHHHhcccCCHHHHHHHHHh
Confidence            2  23458888888777655

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=87.01  E-value=13  Score=29.17  Aligned_cols=89  Identities=12%  Similarity=0.091  Sum_probs=55.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHH---
Q 020976           85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC---  161 (319)
Q Consensus        85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---  161 (319)
                      .=|++++..++|.+++...-+..+..-+..+.....-|-.|.+.+++..+.++-..-....-.-+...|..++..|.   
T Consensus        88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V  167 (309)
T PF07163_consen   88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV  167 (309)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence            34677788888888777665554432222334455556677788888887777776665422223344666655554   


Q ss_pred             --hcCCHHHHHHHH
Q 020976          162 --KEGKLEAAYLLL  173 (319)
Q Consensus       162 --~~~~~~~a~~~~  173 (319)
                        -.|.+++|+++.
T Consensus       168 LlPLG~~~eAeelv  181 (309)
T PF07163_consen  168 LLPLGHFSEAEELV  181 (309)
T ss_pred             HhccccHHHHHHHH
Confidence              368888887776

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=86.61  E-value=6.9  Score=25.77  Aligned_cols=28  Identities=18%  Similarity=0.027  Sum_probs=23.7

Q ss_pred             hhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976          252 FTYSSMVHNLCKAKRLPSASKLLLSCLK  279 (319)
Q Consensus       252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~  279 (319)
                      .-|..++..|...|..++|++++.+..+
T Consensus        40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~   67 (108)
T PF10366_consen   40 GKYQELVDLYQGKGLHRKALELLKKLAD   67 (108)
T ss_pred             CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence            3578888888899999999999988876

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=86.53  E-value=6.6  Score=25.29  Aligned_cols=86  Identities=15%  Similarity=0.079  Sum_probs=48.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 020976           25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILS  104 (319)
Q Consensus        25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  104 (319)
                      ..++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+    ..||...|-.|..  .+.|.-+.+..-+.
T Consensus        20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~   92 (115)
T TIGR02508        20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN   92 (115)
T ss_pred             HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence            456677666666554211 1222222334556677788777776655    3577777766643  45666666666666


Q ss_pred             HHHhCCCCCCcccH
Q 020976          105 AMKRKGYTFDGFGY  118 (319)
Q Consensus       105 ~~~~~~~~~~~~~~  118 (319)
                      ++...| .|....|
T Consensus        93 rla~sg-~p~lq~F  105 (115)
T TIGR02508        93 RLAASG-DPRLQTF  105 (115)
T ss_pred             HHHhCC-CHHHHHH
Confidence            666666 4443333

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=86.28  E-value=3.9  Score=23.70  Aligned_cols=30  Identities=23%  Similarity=0.148  Sum_probs=18.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          285 LKSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      |..-...+|.++...|++++|.++.+++.+
T Consensus        22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~   51 (62)
T PF14689_consen   22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK   51 (62)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            444555566677777777777776666543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=85.80  E-value=13  Score=28.03  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=15.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      .+||.+.--+...|+++.|.+.|+...+.
T Consensus       100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL  128 (297)
T COG4785         100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL  128 (297)
T ss_pred             HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence            34555555555555555555555555544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=85.76  E-value=30  Score=32.05  Aligned_cols=191  Identities=12%  Similarity=0.047  Sum_probs=105.4

Q ss_pred             HHHcCchHHHHHHHHHHHhCCCccChh-------hHHHHH-HHHHhcCCHHHHHHHHHHHHHc----CCCCcHHhHHHHH
Q 020976          125 FVKIGRLKEATDYMEQMVTDGVQLDIV-------SYNTLI-NLYCKEGKLEAAYLLLDEMEKQ----GFECDKYTHTILI  192 (319)
Q Consensus       125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~  192 (319)
                      .....++.+|..++.++...-..|+..       .++.+- ......|++++|.++.+.....    -..+....+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            345688999999998887652222211       233332 2334578899999988877654    2233455667777


Q ss_pred             HHHhccCChhHHHHHHHHHHhcCCCCCh---hhHHHH--HHHHHhcCCHHHH--HHHHHhhccC-----C-----chhHH
Q 020976          193 DGLCKAGNIKGARLHLEYMNKIGFDSNL---EAYNCI--VDRLGKDGKIDHA--INVFESMEVK-----D-----SFTYS  255 (319)
Q Consensus       193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l--~~~~~~~~~~~~a--~~~~~~~~~~-----~-----~~~~~  255 (319)
                      .+..-.|++++|..+.....+..-.-+.   ..+..+  ...+...|+...+  ...|..+...     .     ..++.
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            7777889999999888777654222222   223322  2334567743333  2333322211     1     23344


Q ss_pred             HHHHHHHcc-CChhHHHHHHHHHHHcCCccCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          256 SMVHNLCKA-KRLPSASKLLLSCLKSGVRILKSAQ--KAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       256 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      .++.++.+. +...++..-+.........|-..-.  ..++......|+.++|...++++...
T Consensus       585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l  647 (894)
T COG2909         585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL  647 (894)
T ss_pred             HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            455555541 1122222222222222222221222  25667788899999999999888654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=85.65  E-value=7.6  Score=31.38  Aligned_cols=53  Identities=13%  Similarity=0.056  Sum_probs=31.0

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976           53 KGLCKAGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMK  107 (319)
Q Consensus        53 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  107 (319)
                      +-|.++|.+++|+..|..-...  .| |++++..-..+|.+...+..|..-.....
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai  158 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI  158 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence            3455666677777666665543  23 66666666666666666665555444444

>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat

Probab=85.52  E-value=6.8  Score=24.47  Aligned_cols=34  Identities=12%  Similarity=0.217  Sum_probs=17.3

Q ss_pred             hcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCC
Q 020976          232 KDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKR  266 (319)
Q Consensus       232 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~  266 (319)
                      ..|+.+.|.+++..+. ..+..|..++.++-..|.
T Consensus        48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~   81 (88)
T cd08819          48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEH   81 (88)
T ss_pred             ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence            3455555555555555 445555555555544444

Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=85.03  E-value=24  Score=30.44  Aligned_cols=165  Identities=11%  Similarity=0.029  Sum_probs=90.5

Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHH
Q 020976           78 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI  157 (319)
Q Consensus        78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  157 (319)
                      .|.....+++..+..+..+.-+..+..+|..-|  .+...+..++.+|... ..++-..+++++.+..+. |++.-..+.
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa  139 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA  139 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence            355566666777777666777777777776654  3455666777777766 556666677766665332 233233333


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCC-----cHHhHHHHHHHHhccCChhHHHHHHHHHHhc-CCCCChhhHHHHHHHHH
Q 020976          158 NLYCKEGKLEAAYLLLDEMEKQGFEC-----DKYTHTILIDGLCKAGNIKGARLHLEYMNKI-GFDSNLEAYNCIVDRLG  231 (319)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~  231 (319)
                      .-|.+ ++.+.+...|.++..+-++-     -...|..+...  -..+.+....+...+.+. |...-...+.-+-.-|.
T Consensus       140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys  216 (711)
T COG1747         140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS  216 (711)
T ss_pred             HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence            33333 66666666776665431110     01133333321  134556666665555543 32233344444555666


Q ss_pred             hcCCHHHHHHHHHhhccC
Q 020976          232 KDGKIDHAINVFESMEVK  249 (319)
Q Consensus       232 ~~~~~~~a~~~~~~~~~~  249 (319)
                      ...++++|++++..+.+.
T Consensus       217 ~~eN~~eai~Ilk~il~~  234 (711)
T COG1747         217 ENENWTEAIRILKHILEH  234 (711)
T ss_pred             cccCHHHHHHHHHHHhhh
Confidence            677777777777765544

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=85.00  E-value=23  Score=30.23  Aligned_cols=122  Identities=10%  Similarity=0.073  Sum_probs=78.6

Q ss_pred             HhhcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 020976           20 LCKNRYTDNAL-RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL   98 (319)
Q Consensus        20 ~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   98 (319)
                      ....|++..|- ++++.+....-.|+.....+.  .+...|+++.+...+...... +.....+...+++...+.|++++
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence            33456665554 444444443333554444333  455678999988887766542 33456678888888888999999


Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCC
Q 020976           99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG  145 (319)
Q Consensus        99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  145 (319)
                      |..+-+-|....+. ++..........-..|-++++...|++....+
T Consensus       376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            99998888876543 44444443444455677888888888877653

>smart00028 TPR Tetratricopeptide repeats

Probab=84.85  E-value=2.1  Score=19.65  Aligned_cols=27  Identities=11%  Similarity=0.041  Sum_probs=14.6

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976          253 TYSSMVHNLCKAKRLPSASKLLLSCLK  279 (319)
Q Consensus       253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  279 (319)
                      .|..+...+...++++.|...+++.++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            344455555555566666655555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK09687 putative lyase; Provisional

Probab=84.47  E-value=19  Score=28.65  Aligned_cols=217  Identities=10%  Similarity=0.029  Sum_probs=134.7

Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCch----HHHHHHHHHHHhCCCccChhhH
Q 020976           78 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL----KEATDYMEQMVTDGVQLDIVSY  153 (319)
Q Consensus        78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~  153 (319)
                      +|.......+.++...|.. .+...+..+..   .+|+..-...+.++.+.|+.    +++...+..+...  .++..+.
T Consensus        35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR  108 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR  108 (280)
T ss_pred             CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence            4666666677777766653 34444444443   33556666667777777764    4677777776443  3566666


Q ss_pred             HHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 020976          154 NTLINLYCKEGKL-----EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD  228 (319)
Q Consensus       154 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  228 (319)
                      ...+.++...+..     ..+...+.....   .++..+-...+.++.+.++. .+...+-.+.+   .++..+-...+.
T Consensus       109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~  181 (280)
T PRK09687        109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAF  181 (280)
T ss_pred             HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHH
Confidence            6677777665432     233344433332   34666667778888888774 55566666655   345555566666


Q ss_pred             HHHhcC-CHHHHHHHH-HhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHH
Q 020976          229 RLGKDG-KIDHAINVF-ESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK  306 (319)
Q Consensus       229 ~~~~~~-~~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  306 (319)
                      ++.+.+ +.+.+...+ ..+...+..+-...+.++.+.++ ..++..+-+.++.+.     .....+.++...|.. +|.
T Consensus       182 aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~  254 (280)
T PRK09687        182 ALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLL  254 (280)
T ss_pred             HHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHH
Confidence            666543 133444444 44555688888888999999888 567777766666432     245677888888886 677


Q ss_pred             HHHHHHHh
Q 020976          307 KIQSKIRM  314 (319)
Q Consensus       307 ~~~~~~~~  314 (319)
                      ..+.++.+
T Consensus       255 p~L~~l~~  262 (280)
T PRK09687        255 PVLDTLLY  262 (280)
T ss_pred             HHHHHHHh
Confidence            77777654

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.99  E-value=37  Score=31.76  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhh
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGD   73 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~   73 (319)
                      -|..|+..|...|+.++|+++|.++.+
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d  532 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVD  532 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence            355666666666666666666666654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.69  E-value=20  Score=28.41  Aligned_cols=61  Identities=15%  Similarity=0.098  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      +++.....|..+|.+.+|.++.++.+..+ +.+...+..++..+...|+--.|.+-++++.+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            44556678889999999999999888763 34777888899999999998888777777654

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=83.60  E-value=8.9  Score=25.93  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=23.8

Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 020976           65 RWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR  108 (319)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  108 (319)
                      .+-++.+....+.|++.....-+++|-+.+|+..|.++|+.++.
T Consensus        69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~  112 (149)
T KOG4077|consen   69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD  112 (149)
T ss_pred             HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33444444445555555555555555555555555555555543

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=83.52  E-value=8.7  Score=28.42  Aligned_cols=31  Identities=19%  Similarity=0.110  Sum_probs=18.4

Q ss_pred             ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          283 RILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      .|++.+|..++.++...|+.++|.++.+++.
T Consensus       141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~  171 (193)
T PF11846_consen  141 RPDPNVYQRYALALALLGDPEEARQWLARAR  171 (193)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555666666666666666666665555543

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=82.94  E-value=15  Score=32.21  Aligned_cols=87  Identities=8%  Similarity=0.032  Sum_probs=54.8

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHH
Q 020976           57 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD  136 (319)
Q Consensus        57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  136 (319)
                      -.|+...|...+.......+.-.-+....|.+...+.|....|..++.+..... ...+-++-.+.+++....+.+.|++
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence            457777777766665543332233445555566666666667777776665554 3445566667777777777777777


Q ss_pred             HHHHHHhC
Q 020976          137 YMEQMVTD  144 (319)
Q Consensus       137 ~~~~~~~~  144 (319)
                      .|++..+.
T Consensus       698 ~~~~a~~~  705 (886)
T KOG4507|consen  698 AFRQALKL  705 (886)
T ss_pred             HHHHHHhc
Confidence            77777665

>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion)

Probab=82.43  E-value=11  Score=24.61  Aligned_cols=80  Identities=18%  Similarity=0.226  Sum_probs=39.4

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 020976           24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL  103 (319)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  103 (319)
                      ...++|..+.+.+...+-. ...+--+-+..+...|++++|  +..-  .....||...|-.|  +-.+.|--+++...+
T Consensus        20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A--Ll~~--~~~~~pdL~p~~AL--~a~klGL~~~~e~~l   92 (116)
T PF09477_consen   20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA--LLLP--QCHCYPDLEPWAAL--CAWKLGLASALESRL   92 (116)
T ss_dssp             T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH--HHHH--TTS--GGGHHHHHH--HHHHCT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH--HHhc--ccCCCccHHHHHHH--HHHhhccHHHHHHHH
Confidence            3566777777776665332 222223333455667777777  1111  12234566665555  334666666666666


Q ss_pred             HHHHhCC
Q 020976          104 SAMKRKG  110 (319)
Q Consensus       104 ~~~~~~~  110 (319)
                      .++...|
T Consensus        93 ~rla~~g   99 (116)
T PF09477_consen   93 TRLASSG   99 (116)
T ss_dssp             HHHCT-S
T ss_pred             HHHHhCC
Confidence            6666555

The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.65  E-value=23  Score=27.71  Aligned_cols=207  Identities=13%  Similarity=0.049  Sum_probs=123.7

Q ss_pred             CCCCcchHhHHHHHHH-HhhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhh---CCC
Q 020976            4 GDLTPCTATFNIMLNG-LCKNRYTDNALRMFRGLQKHGFVP---ELVTYNILIKGLCKAGRLRTARWILKELGD---SGH   76 (319)
Q Consensus         4 ~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~   76 (319)
                      .+-.||+..=|..-.. -.+..++++|+.-|++..+....-   .-.+...++....+.+++++....|.++..   +.+
T Consensus        20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV   99 (440)
T KOG1464|consen   20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV   99 (440)
T ss_pred             cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            4456776664433322 223457889999999887743222   234556778888899999999888888753   111


Q ss_pred             --CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC---cccHHHHHHHHHHcCchHHHHHHHHHHHhC-----
Q 020976           77 --APNAITYTTIMKCCFRNRKYKLGLEILSAMKRK--GYTFD---GFGYCTVIAAFVKIGRLKEATDYMEQMVTD-----  144 (319)
Q Consensus        77 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----  144 (319)
                        .-+..+.|.++.......+.+....+|+.-.+.  .-+.+   -.|-.-|...|...+++.+..++++++..+     
T Consensus       100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed  179 (440)
T KOG1464|consen  100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED  179 (440)
T ss_pred             hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence              124556777777766666666666555543221  00111   122345677788888888888888887653     


Q ss_pred             CC------ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHHH-----hccCChhHHHHHHHHH
Q 020976          145 GV------QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGL-----CKAGNIKGARLHLEYM  211 (319)
Q Consensus       145 ~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~  211 (319)
                      |-      ..-...|..-|+.|....+-.+...++++...-. .-|.+.. .-.|+-|     .+.|.+++|..-|-+.
T Consensus       180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEA  257 (440)
T KOG1464|consen  180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEA  257 (440)
T ss_pred             CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHH
Confidence            10      0113457777788888888788888888765432 2333333 3344444     3557777775444333

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=81.03  E-value=25  Score=27.69  Aligned_cols=126  Identities=15%  Similarity=0.062  Sum_probs=84.5

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhC-----CCC-CC-------HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKH-----GFV-PE-------LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN   79 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   79 (319)
                      .....+.+.-..|+..|++..++-.+.     +.. |+       ......=|.+++..+++.++..+.-+....--+.-
T Consensus        38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP  117 (309)
T PF07163_consen   38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP  117 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence            344444555578899998888776542     011 11       11234557899999999999988777655322233


Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-----cCchHHHHHHH
Q 020976           80 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-----IGRLKEATDYM  138 (319)
Q Consensus        80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~  138 (319)
                      +......|-.|.+.+++..+.++-..-.+..-.-+...|.+++..|..     .|.+++|+++.
T Consensus       118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence            455666667789999999999888776654323444558887777665     59999998877

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=80.76  E-value=13  Score=27.45  Aligned_cols=61  Identities=11%  Similarity=-0.030  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhcCChhHHHH---HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           47 TYNILIKGLCKAGRLRTARW---ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      -+...+......++.+....   ..++...  ..|++..|..++.++...|+.++|.+...++...
T Consensus       110 ~~~~~l~~~~~~~~~~~l~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l  173 (193)
T PF11846_consen  110 YYAALLLLARLPPDPEMLEAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRL  173 (193)
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            33333333334444443333   3333333  3678888888888888888888888888877765

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]

Probab=80.64  E-value=14  Score=25.88  Aligned_cols=46  Identities=20%  Similarity=0.130  Sum_probs=21.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976          154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG  199 (319)
Q Consensus       154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  199 (319)
                      ..++..+...++.-.|.++++.+.+.++..+..|...-+..+...|
T Consensus        24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G   69 (145)
T COG0735          24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG   69 (145)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence            3444444444444555555555555444444444333444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-16
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-15
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 77.5 bits (189), Expect = 6e-16
 Identities = 24/178 (13%), Positives = 57/178 (32%), Gaps = 4/178 (2%)

Query: 12  TFNIMLNGLCKNRYTDNA---LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 68
                            A   L +  G ++   +  L  YN ++ G  + G  +   ++L
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188

Query: 69  KELGDSGHAPNAITYTTIMKCCFR-NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK 127
             + D+G  P+ ++Y   ++C  R ++        L  M ++G          +++   +
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248

Query: 128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 185
              LK                  V+ + L+     +    +   L   ++      +K
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 77.2 bits (188), Expect = 1e-15
 Identities = 29/254 (11%), Positives = 71/254 (27%), Gaps = 11/254 (4%)

Query: 31  RMFRGLQKHGFVPELVTYNILIKGLCKAGRL---RTARWILKELGDSGHAPNAITYTTIM 87
           RM R   K     +   +  L + L    RL   + A  +      +  +P       ++
Sbjct: 40  RMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLL 99

Query: 88  KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA---TDYMEQMVTD 144
           +         +         +   +             +   +L  A             
Sbjct: 100 QEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK 159

Query: 145 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 204
              L +  YN ++  + ++G  +    +L  ++  G   D  ++   +  + +     G 
Sbjct: 160 RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT 219

Query: 205 RLH-LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVH 259
               LE M++ G          ++    +   +     V  +      +      S ++ 
Sbjct: 220 IERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279

Query: 260 NLCKAKRLPSASKL 273
           ++       S  KL
Sbjct: 280 DVYAKDGRVSYPKL 293

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 59.1 bits (141), Expect = 8e-10
 Identities = 12/126 (9%), Positives = 38/126 (30%), Gaps = 1/126 (0%)

Query: 1   MICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 60
                       +N ++ G  +       + +   ++  G  P+L++Y   ++ + +  +
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215

Query: 61  -LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 119
              T    L+++   G    A+    ++    R    K   ++                 
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275

Query: 120 TVIAAF 125
            ++   
Sbjct: 276 KLLRDV 281

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 5e-09
 Identities = 51/317 (16%), Positives = 95/317 (29%), Gaps = 92/317 (29%)

Query: 24  RYTDNALRMFRGLQ---KHGFVPELVTYNILIKGLCKAGRLRTARWILKE-LGDSGHAPN 79
            Y +   R++   Q   K+  V  L  Y  L + L +   LR A+ +L + +  SG    
Sbjct: 111 MYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLE---LRPAKNVLIDGVLGSG---- 162

Query: 80  AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME 139
                   K         + L++  + K +    D   +      ++ +         +E
Sbjct: 163 --------KTW-------VALDVCLSYKVQC-KMDFKIF------WLNLKNCNSPETVLE 200

Query: 140 QMVTDGVQLD-----IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI-D 193
            +     Q+D        +++ I L     + E   LL  +          Y + +L+  
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---------PYENCLLVLL 251

Query: 194 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC----------IVDRLG----KDGKIDHA 239
            +  A                 F+      +C          + D L         +DH 
Sbjct: 252 NVQNAKAWN------------AFN-----LSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 240 INVFESMEVKDSFTYSSMVHNLCKAKRLPSASK----LLLSCLKSGVRILKSAQKAVVDG 295
                  EVK        +   C+ + LP          LS +   +R       A  D 
Sbjct: 295 SMTLTPDEVKSLL--LKYLD--CRPQDLPREVLTTNPRRLSIIAESIRD----GLATWDN 346

Query: 296 LRHSGCRREAKKIQSKI 312
            +H  C +    I+S +
Sbjct: 347 WKHVNCDKLTTIIESSL 363

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 7e-07
 Identities = 53/310 (17%), Positives = 86/310 (27%), Gaps = 91/310 (29%)

Query: 5   DLTPCTATFNIMLNGLCKNRYTDNALRMFR---GLQKHGFVPELVTYNILIKGLCKAGRL 61
           D      T +I L+        D    +       +      E++T N     +     +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SI 337

Query: 62  R--TARWI-LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 118
           R   A W   K +       N    TTI++           L +L   + +      F  
Sbjct: 338 RDGLATWDNWKHV-------NCDKLTTIIESS---------LNVLEPAEYRKM----FDR 377

Query: 119 CTVIAAFVKI-----GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 173
            +V      I       +       + M        +V  N L             Y L+
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVM-------VVV--NKLHK-----------YSLV 417

Query: 174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 233
              EKQ  E      +I ++   K  N     LH      I     ++ YN        D
Sbjct: 418 ---EKQPKESTISIPSIYLELKVKLENE--YALH----RSI-----VDHYNIPKTFDSDD 463

Query: 234 GKIDHAINVFESMEVKDSFTYSSMVHNLCKA---KRLPSASKLLLSCLKSGVRILKSAQK 290
               +           D + YS + H+L      +R+     + L       R L+  QK
Sbjct: 464 LIPPYL----------DQYFYSHIGHHLKNIEHPERMTLFRMVFLD-----FRFLE--QK 506

Query: 291 AVVDGLRHSG 300
                +RH  
Sbjct: 507 -----IRHDS 511

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 33/204 (16%), Positives = 56/204 (27%), Gaps = 68/204 (33%)

Query: 124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG--- 180
           AFV     K+  D  + +++      I+              +     L   +  +    
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD---------AVSGTLRLFWTLLSKQEEM 78

Query: 181 ---F--ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 235
              F  E  +  +  L+             +  E             Y    DRL  D +
Sbjct: 79  VQKFVEEVLRINYKFLMS-----------PIKTEQRQPSM---MTRMYIEQRDRLYNDNQ 124

Query: 236 IDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 295
                 VF    V                 RL    KL     +  +  L+ A+  ++DG
Sbjct: 125 ------VFAKYNVS----------------RLQPYLKL-----RQALLELRPAKNVLIDG 157

Query: 296 LRHSG--------CRREAKKIQSK 311
           +  SG        C   + K+Q K
Sbjct: 158 VLGSGKTWVALDVCL--SYKVQCK 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.91
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.91
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.89
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.89
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.88
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.86
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.85
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.82
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.81
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.81
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.8
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.79
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.79
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.78
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.78
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.78
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.77
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.77
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.77
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.77
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.76
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.75
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.75
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.74
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.74
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.73
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.73
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.73
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.73
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.72
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.71
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.71
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.69
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.68
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.68
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.66
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.66
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.65
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.64
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.64
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.64
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.64
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.63
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.62
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.61
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.59
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.58
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.57
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.55
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.55
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.51
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.49
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.47
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.47
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.47
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.45
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.45
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.44
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.4
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.38
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.36
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.35
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.34
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.33
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.33
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.32
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.31
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.31
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.3
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.3
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.3
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.28
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.27
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.25
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.24
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.24
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.24
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.24
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.23
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.21
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.21
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.2
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.19
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.16
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.14
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.13
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.11
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.06
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.06
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.03
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.03
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.03
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.03
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.02
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.0
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.0
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.99
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.99
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.98
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.96
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.96
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.96
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.96
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.95
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.94
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.93
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.92
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.92
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.92
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.89
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.87
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.86
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.85
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.85
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.84
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.84
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.84
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.83
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.83
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.81
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.81
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.78
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.78
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.77
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.76
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.75
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.75
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.74
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.73
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.72
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.7
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.7
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.7
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.7
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.69
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.68
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.66
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.65
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.63
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.62
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.6
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.59
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.55
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.54
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.54
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.53
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.51
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.51
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.51
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.48
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.46
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.44
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.41
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.4
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.39
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.39
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.37
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.36
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.29
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.28
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.24
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.24
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.23
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.03
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.02
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.98
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.93
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.88
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.76
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.63
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.6
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.56
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.49
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.46
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.44
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.44
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.32
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.23
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.22
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.21
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.2
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.15
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.04
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.98
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.98
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.95
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.9
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.71
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.69
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.68
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.65
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.38
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.33
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.07
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.84
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.54
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.54
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.51
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.23
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.13
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.86
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.79
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.67
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.47
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.43
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.42
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.41
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.69
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	93.64
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	93.46
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.09
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	92.13
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	92.02
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.85
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.63
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.93
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.84
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	90.78
2p58_C	116	Putative type III secretion protein YSCG; type III	90.73
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	90.48
2p58_C	116	Putative type III secretion protein YSCG; type III	90.27
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	89.76
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	88.94
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	88.67
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	87.08
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.81
2zu6_B	307	Programmed cell death protein 4; protein-protein c	83.88
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	83.25
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	82.65
2ion_A	152	PDCD4, programmed cell death 4, PDCD4; alpha-helic	82.27
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	82.26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	81.69
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	81.61
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	81.35
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	81.21
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	80.5

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=5.1e-36  Score=250.97  Aligned_cols=197  Identities=16%  Similarity=0.175  Sum_probs=178.6

Q ss_pred             CCCCCCcchH-hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHH
Q 020976            2 ICGDLTPCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR---------LRTARWILKEL   71 (319)
Q Consensus         2 ~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~   71 (319)
                      ++.+..+++. .++.+|++|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+.         +++|.++|++|
T Consensus        17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M   96 (501)
T 4g26_A           17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM   96 (501)
T ss_dssp             -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred             HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence            4455555544 5888999999999999999999999999999999999999999987664         67899999999


Q ss_pred             hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChh
Q 020976           72 GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV  151 (319)
Q Consensus        72 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (319)
                      ...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus        97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~  176 (501)
T 4g26_A           97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP  176 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc
Q 020976          152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA  198 (319)
Q Consensus       152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  198 (319)
                      +|+.++.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus       177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999988764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.9e-35  Score=247.52  Aligned_cols=207  Identities=14%  Similarity=0.168  Sum_probs=182.4

Q ss_pred             HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---------h
Q 020976           27 DNALRMFRGLQKHGFVPEL-VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK---------Y   96 (319)
Q Consensus        27 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~   96 (319)
                      ..+..+.+.+.+.+..+++ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|.+.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            4456666777777766554 46889999999999999999999999999999999999999999987654         6


Q ss_pred             hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976           97 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM  176 (319)
Q Consensus        97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  176 (319)
                      +.|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 020976          177 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD  233 (319)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  233 (319)
                      .+.|+.||..||+.++.+|++.|++++|.+++++|.+.+..|+..||+.++..|...
T Consensus       167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999988753

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.5e-32  Score=235.11  Aligned_cols=307  Identities=12%  Similarity=-0.010  Sum_probs=194.3

Q ss_pred             CCCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-----------------------------------------
Q 020976            4 GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-----------------------------------------   42 (319)
Q Consensus         4 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------------------------   42 (319)
                      .|.+++..+|+.++.+|.+.|++++|+++|+++.+.+..                                         
T Consensus       194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  273 (597)
T 2xpi_A          194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS  273 (597)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence            355678899999999999999999999999998765422                                         


Q ss_pred             -----------------------------CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 020976           43 -----------------------------PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN   93 (319)
Q Consensus        43 -----------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   93 (319)
                                                   ++..+++.++..|.+.|++++|.++|+++.+.+.. +..++..++.++.+.
T Consensus       274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  352 (597)
T 2xpi_A          274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHES  352 (597)
T ss_dssp             HHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHh
Confidence                                         34445555555555566666666666655544322 455555566666666


Q ss_pred             CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976           94 RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL  173 (319)
Q Consensus        94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  173 (319)
                      |++++|.++++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|
T Consensus       353 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  430 (597)
T 2xpi_A          353 GEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAY  430 (597)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            66666666666555443 4455566666666666666666666666665532 234556666666666666666666666


Q ss_pred             HHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC----
Q 020976          174 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----  249 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----  249 (319)
                      +++.+.+. .+..++..++.+|.+.|++++|..+|+.+.+.. +.+..++..++..|.+.|++++|.++|+++...    
T Consensus       431 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  508 (597)
T 2xpi_A          431 TTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT  508 (597)
T ss_dssp             HHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence            66665432 255566666666666666666666666666553 345566666666666666666666666665321    


Q ss_pred             ----C--chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          250 ----D--SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       250 ----~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                          +  ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.+
T Consensus       509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  580 (597)
T 2xpi_A          509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS  580 (597)
T ss_dssp             CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence                1  3456666666666666666666666666553 2356666666666666666666666666665544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-31  Score=232.73  Aligned_cols=284  Identities=13%  Similarity=0.008  Sum_probs=253.6

Q ss_pred             CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976            7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI   86 (319)
Q Consensus         7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   86 (319)
                      +++..+|+.++..|.+.|++++|+++|+++.+.+.. +..++..++.++.+.|++++|.++++++.... +.+..+++.+
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l  379 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV  379 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence            589999999999999999999999999999987543 78899999999999999999999999998653 4478899999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCH
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL  166 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  166 (319)
                      +..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++...+ +.+..+|..++.+|.+.|++
T Consensus       380 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~  457 (597)
T 2xpi_A          380 GIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI  457 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence            999999999999999999998864 5567899999999999999999999999999873 45788999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCCHHHHH
Q 020976          167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDSN--LEAYNCIVDRLGKDGKIDHAI  240 (319)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~  240 (319)
                      ++|.++|+++.+.... +..+|..++..+.+.|++++|..+|+++.+.    +..|+  ..++..++.+|.+.|++++|.
T Consensus       458 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~  536 (597)
T 2xpi_A          458 LLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI  536 (597)
T ss_dssp             HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence            9999999999987544 7889999999999999999999999999876    55677  689999999999999999999


Q ss_pred             HHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 020976          241 NVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL  296 (319)
Q Consensus       241 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  296 (319)
                      +.|+++...   ++.+|..+..+|...|++++|.+.|+++.+.... +...+..+..+|
T Consensus       537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~  594 (597)
T 2xpi_A          537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRAL  594 (597)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence            999987643   7789999999999999999999999999986432 566676666554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=2.4e-27  Score=194.77  Aligned_cols=302  Identities=12%  Similarity=0.015  Sum_probs=220.1

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      .+..+|..+...+.+.|++++|++.|+++.+..+ .+..+|..+..++.+.|++++|.+.|+++.+..+. +...+..+.
T Consensus        65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~  142 (388)
T 1w3b_A           65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLG  142 (388)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence            3556677777777777777777777777766432 24556777777777777777777777777664322 345566666


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976           88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE  167 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  167 (319)
                      ..+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++...+ +.+...+..+...+...|+++
T Consensus       143 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~  220 (388)
T 1w3b_A          143 NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFD  220 (388)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTT
T ss_pred             HHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence            66777777777777777776653 4445667777777777777777777777777653 334566777777777777777


Q ss_pred             HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      +|...+++.....+. +..++..+...+...|++++|...++++.+.+ +.+..++..+..++.+.|++++|.+.|+++.
T Consensus       221 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  298 (388)
T 1w3b_A          221 RAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL  298 (388)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            877777777765433 56677888888888888888888888888764 4456778888888888888888888888776


Q ss_pred             cC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          248 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       248 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      ..   ++.++..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.++++.+..
T Consensus       299 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  369 (388)
T 1w3b_A          299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            43   66788888888888889999998888887752 3356788888888889999999999888877654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=3.5e-26  Score=187.82  Aligned_cols=301  Identities=12%  Similarity=0.003  Sum_probs=261.6

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|.+.|+++.... +.+..+|..+..
T Consensus        32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  109 (388)
T 1w3b_A           32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAA  109 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence            45567778888899999999999999988764 4478899999999999999999999999998753 225678999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA  168 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  168 (319)
                      ++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.... +.+..+|..+...+...|++++
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  187 (388)
T 1w3b_A          110 ALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWL  187 (388)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999998874 4455667788888999999999999999998863 3457889999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 020976          169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV  248 (319)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  248 (319)
                      |...|+++.+.++. +...+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|.+.|+++..
T Consensus       188 A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  265 (388)
T 1w3b_A          188 AIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE  265 (388)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999987544 56788899999999999999999999998864 44678889999999999999999999998875


Q ss_pred             C---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          249 K---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       249 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      .   ++.+|..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+..
T Consensus       266 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  335 (388)
T 1w3b_A          266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            4   56789999999999999999999999999873 4578899999999999999999999999986643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=4.4e-26  Score=190.84  Aligned_cols=304  Identities=11%  Similarity=0.041  Sum_probs=258.8

Q ss_pred             CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976            7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI   86 (319)
Q Consensus         7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   86 (319)
                      +.++..+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++.+.+.. +..++..+
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l  100 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQR  100 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence            3466778999999999999999999999998863 347899999999999999999999999999986533 68899999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCc---ccHHHH------------HHHHHHcCchHHHHHHHHHHHhCCCccChh
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRKGYTFDG---FGYCTV------------IAAFVKIGRLKEATDYMEQMVTDGVQLDIV  151 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (319)
                      ..++.+.|++++|.+.|+++.+.. +.+.   ..+..+            ...+...|++++|...|+++.... +.+..
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  178 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE  178 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence            999999999999999999999874 3334   555555            344888999999999999998863 45778


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH-----
Q 020976          152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI-----  226 (319)
Q Consensus       152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----  226 (319)
                      ++..+..++...|++++|.+.|+++.+.... +..++..+...+...|++++|...++.+.+.. +.+...+..+     
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          179 LRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK  256 (450)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence            8999999999999999999999999876433 67889999999999999999999999998764 3344444444     


Q ss_pred             -------HHHHHhcCCHHHHHHHHHhhccCC-------chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHH
Q 020976          227 -------VDRLGKDGKIDHAINVFESMEVKD-------SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV  292 (319)
Q Consensus       227 -------~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  292 (319)
                             ...+...|++++|...|+++...+       ...+..+...+.+.|++++|...++++.+.. +.+...+..+
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l  335 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence                   788999999999999999886542       2378888999999999999999999998763 3378899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976          293 VDGLRHSGCRREAKKIQSKIRMAKI  317 (319)
Q Consensus       293 ~~~~~~~g~~~~a~~~~~~~~~~~i  317 (319)
                      ..+|...|++++|.+.++++.+...
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~~~p  360 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQEHNE  360 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999876543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.94  E-value=2.8e-23  Score=168.39  Aligned_cols=303  Identities=11%  Similarity=0.021  Sum_probs=254.9

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      |+..+..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...++++.+... .+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence            567888899999999999999999999988644 3788999999999999999999999999988643 26788999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCC---CCcccHHHH------------HHHHHHcCchHHHHHHHHHHHhCCCccChhhH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYT---FDGFGYCTV------------IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY  153 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  153 (319)
                      ++...|++++|...++++.+.. +   .+...+..+            ...+...|++++|...++++.... +.+...+
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  157 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR  157 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence            9999999999999999998774 3   344555544            578889999999999999998863 4577889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH---------
Q 020976          154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN---------  224 (319)
Q Consensus       154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------  224 (319)
                      ..+..++...|++++|...+++..+..+. +...+..+...+...|++++|...++...+.. +.+...+.         
T Consensus       158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~  235 (359)
T 3ieg_A          158 ELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN  235 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence            99999999999999999999999987533 67889999999999999999999999998864 33333332         


Q ss_pred             ---HHHHHHHhcCCHHHHHHHHHhhccC---Cc----hhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHH
Q 020976          225 ---CIVDRLGKDGKIDHAINVFESMEVK---DS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD  294 (319)
Q Consensus       225 ---~l~~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  294 (319)
                         .+...+...|++++|...++++...   ++    ..+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~  314 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE  314 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence               2366788999999999999987654   22    235567788999999999999999999863 337889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhhcc
Q 020976          295 GLRHSGCRREAKKIQSKIRMAKIS  318 (319)
Q Consensus       295 ~~~~~g~~~~a~~~~~~~~~~~i~  318 (319)
                      ++...|++++|.+.+++..+....
T Consensus       315 ~~~~~g~~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          315 AYLIEEMYDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999998876543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=5.3e-23  Score=172.16  Aligned_cols=297  Identities=14%  Similarity=0.072  Sum_probs=243.7

Q ss_pred             CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh---hhH
Q 020976            7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA---ITY   83 (319)
Q Consensus         7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~   83 (319)
                      +.+..+|..+...+...|++++|+..|+++.+.+.. +..++..+...|.+.|++++|.+.|+++...... +.   ..+
T Consensus        57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~  134 (450)
T 2y4t_A           57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQ  134 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHH
Confidence            346788999999999999999999999999987543 6889999999999999999999999999886322 33   555


Q ss_pred             HHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChh
Q 020976           84 TTI------------MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV  151 (319)
Q Consensus        84 ~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  151 (319)
                      ..+            ...+...|++++|...++++.+.. +.+...+..+..++.+.|++++|...|+++.... +.+..
T Consensus       135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~  212 (450)
T 2y4t_A          135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTE  212 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence            555            444889999999999999999875 5678889999999999999999999999998762 45678


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHH------------HHHHhccCChhHHHHHHHHHHhcCCCCC
Q 020976          152 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL------------IDGLCKAGNIKGARLHLEYMNKIGFDSN  219 (319)
Q Consensus       152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~  219 (319)
                      ++..+..++...|++++|...|+++.+..+. +...+..+            ...+...|++++|...++.+.+..  |+
T Consensus       213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~  289 (450)
T 2y4t_A          213 AFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PS  289 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc
Confidence            8999999999999999999999999876433 34444444            788999999999999999999864  44


Q ss_pred             -----hhhHHHHHHHHHhcCCHHHHHHHHHhhcc--C-CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHH
Q 020976          220 -----LEAYNCIVDRLGKDGKIDHAINVFESMEV--K-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA  291 (319)
Q Consensus       220 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  291 (319)
                           ...+..+..++.+.|++++|...++++..  + ++..|..+..+|...|++++|...++++++.... +...+..
T Consensus       290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~  368 (450)
T 2y4t_A          290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREG  368 (450)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHH
Confidence                 34788889999999999999999998763  2 6789999999999999999999999999885322 4556666


Q ss_pred             HHHH------------HHhcC-----CHHHHHHHHHH
Q 020976          292 VVDG------------LRHSG-----CRREAKKIQSK  311 (319)
Q Consensus       292 l~~~------------~~~~g-----~~~~a~~~~~~  311 (319)
                      +..+            |...|     ..+++.+.+++
T Consensus       369 l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~  405 (450)
T 2y4t_A          369 LEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK  405 (450)
T ss_dssp             HHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence            6532            33344     55666766665

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.4e-22  Score=162.43  Aligned_cols=293  Identities=11%  Similarity=-0.048  Sum_probs=245.8

Q ss_pred             CCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976            5 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT   84 (319)
Q Consensus         5 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (319)
                      +++.+...+..+...+...|++++|+++|+++.+... .+...+..++..+...|++++|..+++++.+... .+...+.
T Consensus        17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~   94 (330)
T 3hym_B           17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWF   94 (330)
T ss_dssp             ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHH
T ss_pred             hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHH
Confidence            4566777888899999999999999999999988643 3667777888899999999999999999988643 3678899


Q ss_pred             HHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc
Q 020976           85 TIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE  163 (319)
Q Consensus        85 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  163 (319)
                      .+...+...| ++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence            9999999999 9999999999999875 5567889999999999999999999999998863 33567788899999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC--------CCCChhhHHHHHHHHHhcCC
Q 020976          164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG--------FDSNLEAYNCIVDRLGKDGK  235 (319)
Q Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~  235 (319)
                      |++++|.+.+++..+.... +...+..+...+...|++++|...++...+..        .+....++..+..++...|+
T Consensus       173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  251 (330)
T 3hym_B          173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK  251 (330)
T ss_dssp             TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence            9999999999999987543 67888999999999999999999999988642        13345788999999999999


Q ss_pred             HHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHH-HhcCCHH
Q 020976          236 IDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL-RHSGCRR  303 (319)
Q Consensus       236 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~  303 (319)
                      +++|...+++....   ++..+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus       252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            99999999987643   77889999999999999999999999988753 23677788888877 4566554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-22  Score=172.46  Aligned_cols=300  Identities=10%  Similarity=-0.039  Sum_probs=252.9

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      ....|......+.+.|++++|+..|+++.+.+  |+..+|..+..++.+.|++++|.+.++++.+.++ .+..++..+..
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~   81 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHH
Confidence            35667888899999999999999999999864  7899999999999999999999999999998653 36789999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCc-----------------------------------------------------
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDG-----------------------------------------------------  115 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------------------------------------------  115 (319)
                      ++...|++++|...|+++...+ +++.                                                     
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS  160 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred             HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence            9999999999999999988764 2221                                                     


Q ss_pred             --------------------------ccHHHHHHHHHH---cCchHHHHHHHHHHHh-----CCC--------ccChhhH
Q 020976          116 --------------------------FGYCTVIAAFVK---IGRLKEATDYMEQMVT-----DGV--------QLDIVSY  153 (319)
Q Consensus       116 --------------------------~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~  153 (319)
                                                ..+......+..   .|++++|...|+++..     ...        +.+..++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (514)
T 2gw1_A          161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL  240 (514)
T ss_dssp             HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence                                      112222222333   7999999999999887     311        2345678


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 020976          154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD  233 (319)
Q Consensus       154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  233 (319)
                      ..+...+...|++++|...++++.+....  ...+..+...+...|++++|...++.+.+.. +.+..++..+..++...
T Consensus       241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  317 (514)
T 2gw1_A          241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL  317 (514)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence            88899999999999999999999987544  7788899999999999999999999998864 55678899999999999


Q ss_pred             CCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020976          234 GKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS  310 (319)
Q Consensus       234 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  310 (319)
                      |++++|...+++....   ++..+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++
T Consensus       318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999987643   67789999999999999999999999998863 3367788999999999999999999999


Q ss_pred             HHHhhh
Q 020976          311 KIRMAK  316 (319)
Q Consensus       311 ~~~~~~  316 (319)
                      ++.+..
T Consensus       397 ~a~~~~  402 (514)
T 2gw1_A          397 LAIELE  402 (514)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            887654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-22  Score=172.54  Aligned_cols=306  Identities=9%  Similarity=-0.069  Sum_probs=184.2

Q ss_pred             CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-------
Q 020976            7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-------   79 (319)
Q Consensus         7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------   79 (319)
                      .|+..+|..+..++.+.|++++|++.|+++.+.++ .+..++..+..++...|++++|...|+++...+...+       
T Consensus        36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  114 (514)
T 2gw1_A           36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML  114 (514)
T ss_dssp             CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred             CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence            37888888888999999999999999998887643 3677888888888888888888888888765432100       


Q ss_pred             -----------------------------------------------------------------------hhhHHHHHH
Q 020976           80 -----------------------------------------------------------------------AITYTTIMK   88 (319)
Q Consensus        80 -----------------------------------------------------------------------~~~~~~l~~   88 (319)
                                                                                             ...+.....
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (514)
T 2gw1_A          115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL  194 (514)
T ss_dssp             HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence                                                                                   111122222


Q ss_pred             HHHh---cCChhHHHHHHHHHHh-----CCC--------CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCC-------
Q 020976           89 CCFR---NRKYKLGLEILSAMKR-----KGY--------TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-------  145 (319)
Q Consensus        89 ~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------  145 (319)
                      .+..   .|++++|...++++.+     ..-        +.+...+..+...+...|++++|...++++....       
T Consensus       195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~  274 (514)
T 2gw1_A          195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI  274 (514)
T ss_dssp             HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHH
Confidence            2222   4556666666655554     200        1123344445555555555555555555544432       


Q ss_pred             -------------------------CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC
Q 020976          146 -------------------------VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN  200 (319)
Q Consensus       146 -------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  200 (319)
                                               .+.+...+..+...+...|++++|...+++..+.... +...+..+...+...|+
T Consensus       275 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  353 (514)
T 2gw1_A          275 YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENK  353 (514)
T ss_dssp             HHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCC
Confidence                                     1223444555555555566666666666665554322 34455556666666666


Q ss_pred             hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---C------chhHHHHHHHHHc---cCChh
Q 020976          201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D------SFTYSSMVHNLCK---AKRLP  268 (319)
Q Consensus       201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~------~~~~~~l~~~~~~---~~~~~  268 (319)
                      +++|...++.+.+.. +.+..++..+...+...|++++|...++++...   +      ...+..+...+..   .|+++
T Consensus       354 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  432 (514)
T 2gw1_A          354 FDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI  432 (514)
T ss_dssp             HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred             HHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence            666666666665542 334455666666666666666666666655432   2      2266666666776   67777


Q ss_pred             HHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          269 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      +|...++++.... +.+...+..+..++.+.|++++|.+.+++..+.+
T Consensus       433 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          433 EATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            7777777766653 2245666667777777777777777777665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.92  E-value=9.2e-22  Score=157.71  Aligned_cols=270  Identities=10%  Similarity=-0.077  Sum_probs=233.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHH
Q 020976           41 FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT  120 (319)
Q Consensus        41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  120 (319)
                      .+.+...+..+...+...|++++|.++|+++..... .+...+..++.++...|++++|...++++.+.. +.+...+..
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~   95 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA   95 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence            345677888899999999999999999999988643 367778888899999999999999999999875 557788999


Q ss_pred             HHHHHHHcC-chHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976          121 VIAAFVKIG-RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG  199 (319)
Q Consensus       121 ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  199 (319)
                      +...+...| ++++|...|++..... +.+...+..+..++...|++++|...+++..+.... +...+..+...+...|
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence            999999999 9999999999999863 446778999999999999999999999999987544 4566777999999999


Q ss_pred             ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc-----------C-CchhHHHHHHHHHccCCh
Q 020976          200 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV-----------K-DSFTYSSMVHNLCKAKRL  267 (319)
Q Consensus       200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~  267 (319)
                      ++++|...++...+.. +.+...+..+...+...|++++|...+++...           + .+..+..+...+...|++
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            9999999999999875 55678899999999999999999999987753           2 457899999999999999


Q ss_pred             hHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          268 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       268 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      ++|...+++..+... .+...+..+..++.+.|++++|.+.+++..+..
T Consensus       253 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (330)
T 3hym_B          253 AEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR  300 (330)
T ss_dssp             HHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred             HHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence            999999999998643 367889999999999999999999999876654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.91  E-value=5.9e-21  Score=163.26  Aligned_cols=228  Identities=12%  Similarity=0.020  Sum_probs=162.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 020976           83 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK  162 (319)
Q Consensus        83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (319)
                      +..+...+...|++++|.+.+++..+.  .|+...+..+...+...|++++|...++++.... +.+..++..+...+..
T Consensus       246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  322 (537)
T 3fp2_A          246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI  322 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence            344445555666777777777776665  3445666666777777777777777777776652 3356677777777888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 020976          163 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV  242 (319)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  242 (319)
                      .|++++|...+++..+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...
T Consensus       323 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  400 (537)
T 3fp2_A          323 LQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ  400 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            88888888888887766433 45667777777888888888888888877764 44566777778888888888888888


Q ss_pred             HHhhccC---C------chhHHHHHHHHHcc----------CChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHH
Q 020976          243 FESMEVK---D------SFTYSSMVHNLCKA----------KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR  303 (319)
Q Consensus       243 ~~~~~~~---~------~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (319)
                      ++++...   +      ...+......+...          |++++|...++++.+... .+...+..+..+|.+.|+++
T Consensus       401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~  479 (537)
T 3fp2_A          401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKID  479 (537)
T ss_dssp             HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHH
Confidence            8776532   1      12233444566666          888888888888877632 36678888999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 020976          304 EAKKIQSKIRMAK  316 (319)
Q Consensus       304 ~a~~~~~~~~~~~  316 (319)
                      +|.+.|++..+..
T Consensus       480 ~A~~~~~~al~~~  492 (537)
T 3fp2_A          480 EAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999998876654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.91  E-value=3.7e-22  Score=162.62  Aligned_cols=288  Identities=8%  Similarity=-0.056  Sum_probs=228.4

Q ss_pred             HhhcCChHHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976           20 LCKNRYTDNALR-MFRGLQKHGFV---PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK   95 (319)
Q Consensus        20 ~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   95 (319)
                      +...|++++|++ .|++.......   .+...+..+...+...|++++|...|+++.+... .+..++..+..++...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcC
Confidence            445578888888 77765543221   1356788899999999999999999999998743 378889999999999999


Q ss_pred             hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH---------------HHHHH
Q 020976           96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT---------------LINLY  160 (319)
Q Consensus        96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~  160 (319)
                      +++|.+.++++.+.. +.+..++..+..++...|++++|...++++..... .+...+..               .+..+
T Consensus       114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHH
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            999999999998875 56788899999999999999999999999988632 22222221               23344


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 020976          161 CKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA  239 (319)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  239 (319)
                      ...|++++|...++++.+..+.. +..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|
T Consensus       192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence            48999999999999998864432 47788999999999999999999999998874 45678899999999999999999


Q ss_pred             HHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc----------CHHHHHHHHHHHHhcCCHHHHH
Q 020976          240 INVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI----------LKSAQKAVVDGLRHSGCRREAK  306 (319)
Q Consensus       240 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~  306 (319)
                      ...++++...   ++..+..+...|...|++++|...++++.+.....          ...+|..+..+|...|++++|.
T Consensus       271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            9999987643   66789999999999999999999999988752221          1678999999999999999999


Q ss_pred             HHHHH
Q 020976          307 KIQSK  311 (319)
Q Consensus       307 ~~~~~  311 (319)
                      .++++
T Consensus       351 ~~~~~  355 (368)
T 1fch_A          351 AADAR  355 (368)
T ss_dssp             HHHTT
T ss_pred             HhHHH
Confidence            88764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.90  E-value=3.2e-20  Score=150.37  Aligned_cols=285  Identities=13%  Similarity=0.047  Sum_probs=233.0

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CChhhHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PNAITYTT   85 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~   85 (319)
                      .+..+|..+...+...|++++|+..|+++.+... .+...+..+...+...|++++|...|+++.+....  .+...+..
T Consensus        35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  113 (359)
T 3ieg_A           35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ  113 (359)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence            4577899999999999999999999999988643 37789999999999999999999999999886320  14445554


Q ss_pred             H------------HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhH
Q 020976           86 I------------MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY  153 (319)
Q Consensus        86 l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  153 (319)
                      +            ...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.... +.+..++
T Consensus       114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  191 (359)
T 3ieg_A          114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAF  191 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence            4            578889999999999999998875 5677889999999999999999999999999873 5577889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH------------HHHHHHhccCChhHHHHHHHHHHhcCCCCCh-
Q 020976          154 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT------------ILIDGLCKAGNIKGARLHLEYMNKIGFDSNL-  220 (319)
Q Consensus       154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  220 (319)
                      ..+...+...|++++|...+++..+..+. +...+.            .+...+...|++++|...++.+.+.. +.+. 
T Consensus       192 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  269 (359)
T 3ieg_A          192 YKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAE  269 (359)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchH
Confidence            99999999999999999999999876433 333332            23666889999999999999998864 2222 


Q ss_pred             ---hhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHH
Q 020976          221 ---EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD  294 (319)
Q Consensus       221 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  294 (319)
                         ..+..+..++...|++++|...+++....   ++..+..+...+...|++++|...|+++.+... .+...+..+..
T Consensus       270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~  348 (359)
T 3ieg_A          270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEK  348 (359)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHH
Confidence               23556778999999999999999987643   678899999999999999999999999998632 24556666655


Q ss_pred             HHHh
Q 020976          295 GLRH  298 (319)
Q Consensus       295 ~~~~  298 (319)
                      +...
T Consensus       349 ~~~~  352 (359)
T 3ieg_A          349 AQRL  352 (359)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=1.4e-20  Score=161.01  Aligned_cols=301  Identities=12%  Similarity=0.028  Sum_probs=241.4

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      ....|..+...+.+.|++++|++.|+++.+..+ .+..++..+..++.+.|++++|.+.|+++....+ .+..++..+..
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~  101 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence            346688889999999999999999999998753 4789999999999999999999999999988653 37888999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCC------------------------------------CCccc---------------
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYT------------------------------------FDGFG---------------  117 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~------------------------------------~~~~~---------------  117 (319)
                      ++...|++++|.+.|+.+....-.                                    |+...               
T Consensus       102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS  181 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence            999999999999999644211100                                    00000               


Q ss_pred             -----------HHHHHHHHH------------HcCchHHHHHHHHHHHhCCCccC-------hhhHHHHHHHHHhcCCHH
Q 020976          118 -----------YCTVIAAFV------------KIGRLKEATDYMEQMVTDGVQLD-------IVSYNTLINLYCKEGKLE  167 (319)
Q Consensus       118 -----------~~~ll~~~~------------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~  167 (319)
                                 +..+...+.            ..|++++|..+++++.... +.+       ..++..+...+...|+++
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~  260 (537)
T 3fp2_A          182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLL  260 (537)
T ss_dssp             TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence                       000111111            1247889999999988753 222       234667778888999999


Q ss_pred             HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      +|...+++..+.  .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.
T Consensus       261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  337 (537)
T 3fp2_A          261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ  337 (537)
T ss_dssp             HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999986  4557788899999999999999999999999875 5567889999999999999999999999876


Q ss_pred             cC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          248 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       248 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      ..   ++..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus       338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            43   67789999999999999999999999999874 3367789999999999999999999999986654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.90  E-value=1.3e-20  Score=153.39  Aligned_cols=264  Identities=10%  Similarity=-0.056  Sum_probs=223.7

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +...+..+...+.+.|++++|+..|+++.+... .+..++..+...+...|++++|.+.|+++..... .+..++..+..
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~  140 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAV  140 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence            356688899999999999999999999998744 4788999999999999999999999999988653 37889999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHH---------------HHHHHHHcCchHHHHHHHHHHHhCCCcc-Chhh
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT---------------VIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVS  152 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~  152 (319)
                      ++...|++++|.+.++++.... +.+...+..               .+..+...|++++|...++++....... +..+
T Consensus       141 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  219 (368)
T 1fch_A          141 SFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV  219 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence            9999999999999999999874 333333321               2334448899999999999998863211 4788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK  232 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  232 (319)
                      +..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++++.+.. +.+..++..+..+|..
T Consensus       220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~  297 (368)
T 1fch_A          220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN  297 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            999999999999999999999999887433 67789999999999999999999999998874 5567889999999999


Q ss_pred             cCCHHHHHHHHHhhccC---C-----------chhHHHHHHHHHccCChhHHHHHHHHH
Q 020976          233 DGKIDHAINVFESMEVK---D-----------SFTYSSMVHNLCKAKRLPSASKLLLSC  277 (319)
Q Consensus       233 ~~~~~~a~~~~~~~~~~---~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~  277 (319)
                      .|++++|...|+++...   +           ..+|..+..+|...|++++|..++++.
T Consensus       298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence            99999999999987643   3           578999999999999999999887643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.89  E-value=4.2e-21  Score=156.26  Aligned_cols=264  Identities=10%  Similarity=-0.037  Sum_probs=155.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      +...+..+...+.+.|++++|.+.|+++..... .+..++..+..++...|++++|++.|+++.+.. +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            334455556666666666666666666655432 245566666666666666666666666665543 334555666666


Q ss_pred             HHHHcCchHHHHHHHHHHHhCCCccC----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHHhHHHHH
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGVQLD----------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILI  192 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~  192 (319)
                      ++...|++++|...++++.... +.+          ...+..+...+...|++++|...++++.+..+. ++..++..+.
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            6666666666666666665531 111          112233456666667777777777766665322 1455666666


Q ss_pred             HHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhH
Q 020976          193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPS  269 (319)
Q Consensus       193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~  269 (319)
                      ..+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|++....   ++.++..+...|...|++++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            66667777777777777766653 345566677777777777777777777665432   45566777777777777777


Q ss_pred             HHHHHHHHHHcCCc-----------cCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 020976          270 ASKLLLSCLKSGVR-----------ILKSAQKAVVDGLRHSGCRREAKKIQSK  311 (319)
Q Consensus       270 a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~  311 (319)
                      |...++++++....           .+...|..+..++...|+.+.+.++.++
T Consensus       300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            77777776654211           1246677777788888888777766543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.89  E-value=3.2e-21  Score=156.97  Aligned_cols=261  Identities=9%  Similarity=-0.082  Sum_probs=200.4

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +...|..+...+.+.|++++|++.|+++.+... .+..+|..+...+...|++++|.+.|+++..... .+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence            455688888888899999999999998887643 3778888888999999999999999998887542 35788888888


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH----------HHHHHHcCchHHHHHHHHHHHhCCCc-cChhhHHHHH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV----------IAAFVKIGRLKEATDYMEQMVTDGVQ-LDIVSYNTLI  157 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~  157 (319)
                      ++...|++++|.+.++++.+.. +.+...+..+          ...+...|++++|...++++...... ++..++..+.
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            8999999999999998888764 3333444333          66778888899999999988876321 1577888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 020976          158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID  237 (319)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  237 (319)
                      ..+...|++++|.+.+++..+..+. +..++..+..++...|++++|...++++.+.. +.+..++..+..+|...|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence            8888999999999999988876433 67788888888889999999999998888764 445778888888899999999


Q ss_pred             HHHHHHHhhccC---------------CchhHHHHHHHHHccCChhHHHHHH
Q 020976          238 HAINVFESMEVK---------------DSFTYSSMVHNLCKAKRLPSASKLL  274 (319)
Q Consensus       238 ~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~  274 (319)
                      +|...|++....               +...|..+..++...|+.+.+..+.
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  350 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN  350 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            999888876532               2567888888888888887776554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.89  E-value=9.6e-21  Score=151.57  Aligned_cols=277  Identities=11%  Similarity=-0.031  Sum_probs=171.4

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +...+..+...+...|++++|+.+|+++.+... .+..++..+...+...|++++|.+.++++.... +.+..++..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence            344556666777777777777777777766533 256667777777777777777777777776653 225666777777


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHH-HH-HHHhcCCH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL-IN-LYCKEGKL  166 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~  166 (319)
                      .+...|++++|.+.++++.+.. +.+...+..+....                      |+......+ .. .+...|++
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~  154 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY  154 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence            7777777777777777776653 22333332221000                      000001111 11 24455666


Q ss_pred             HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976          167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM  246 (319)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  246 (319)
                      ++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++
T Consensus       155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  232 (327)
T 3cv0_A          155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA  232 (327)
T ss_dssp             HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6666666666554322 45556666666666666666666666666543 334556666666667777777777776665


Q ss_pred             ccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976          247 EVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI-----------LKSAQKAVVDGLRHSGCRREAKKIQSKI  312 (319)
Q Consensus       247 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (319)
                      ...   +...+..+...+...|++++|...++++.......           +...+..+..++.+.|++++|..++++.
T Consensus       233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            432   45667777777888888888888888777653221           4678888889999999999998887653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.88  E-value=2.4e-20  Score=149.28  Aligned_cols=232  Identities=9%  Similarity=-0.071  Sum_probs=153.7

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH-
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI-   86 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-   86 (319)
                      .+..+|..+...+...|++++|...|+++.+... .+..++..+...+...|++++|.+.++++...... +...+..+ 
T Consensus        53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~  130 (327)
T 3cv0_A           53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNL  130 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-----
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHh
Confidence            3667888999999999999999999999988643 37889999999999999999999999999886432 34444443 


Q ss_pred             -------------HH-HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhh
Q 020976           87 -------------MK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS  152 (319)
Q Consensus        87 -------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (319)
                                   .. .+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+..+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  208 (327)
T 3cv0_A          131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQL  208 (327)
T ss_dssp             ---------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHH
Confidence                         22 2555666777777777666553 3455666666666677777777777777666542 234556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-----------Chh
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-----------NLE  221 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~  221 (319)
                      +..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.....           +..
T Consensus       209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  287 (327)
T 3cv0_A          209 WNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS  287 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHH
Confidence            666666666677777777777666654322 45556666666666666666666666665542110           244


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHH
Q 020976          222 AYNCIVDRLGKDGKIDHAINVFE  244 (319)
Q Consensus       222 ~~~~l~~~~~~~~~~~~a~~~~~  244 (319)
                      ++..+..++...|++++|..+++
T Consensus       288 ~~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          288 MWDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHH
Confidence            55555555555555555555544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.87  E-value=1.3e-19  Score=142.20  Aligned_cols=275  Identities=10%  Similarity=-0.002  Sum_probs=214.2

Q ss_pred             HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976           17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY   96 (319)
Q Consensus        17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   96 (319)
                      +......|+++.|+..++........+.......+.++|...|+++.|...++.   . -+|+..++..+...+...++.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence            455677899999999988765542222234556778999999999999986654   2 356788889999999999999


Q ss_pred             hHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020976           97 KLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE  175 (319)
Q Consensus        97 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  175 (319)
                      ++|++.++++...+..| ++..+..+...+...|++++|++.+++      +.+...+..++..+.+.|++++|.+.+++
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999998876444 556667777899999999999999987      45778899999999999999999999999


Q ss_pred             HHHcCCCCcHHhH---HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---
Q 020976          176 MEKQGFECDKYTH---TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---  249 (319)
Q Consensus       176 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  249 (319)
                      +.+..  |+....   ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++...   
T Consensus       156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99874  443211   223344455689999999999999874 678889999999999999999999999987643   


Q ss_pred             CchhHHHHHHHHHccCChhH-HHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 020976          250 DSFTYSSMVHNLCKAKRLPS-ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ  309 (319)
Q Consensus       250 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  309 (319)
                      ++.++..++..+...|+.++ +.++++++++.  .|+...   +.+...+.+.++++..-|
T Consensus       233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence            77889999999999999876 57899998876  343322   234455666666665433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.86  E-value=2.7e-19  Score=140.45  Aligned_cols=255  Identities=15%  Similarity=0.111  Sum_probs=205.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCch
Q 020976           52 IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL  131 (319)
Q Consensus        52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  131 (319)
                      ++.....|+++.|+..++........+.......+.++|...|+++.|+..++.   . -+|+..++..+...+...++.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence            344567899999999998876542222234556778999999999999986654   2 366777888888999999999


Q ss_pred             HHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHH
Q 020976          132 KEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY  210 (319)
Q Consensus       132 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  210 (319)
                      ++|++.++++...+..| +...+..+..++...|++++|++.+++      ..+...+..++..+.+.|++++|...++.
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999998876434 566677778999999999999999987      35777889999999999999999999999


Q ss_pred             HHhcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc
Q 020976          211 MNKIGFDSNLEAY---NCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI  284 (319)
Q Consensus       211 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  284 (319)
                      +.+..  |+....   ...+..+...|++++|..+|+++...   ++..++.+..++...|++++|...+++.+.... -
T Consensus       156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~  232 (291)
T 3mkr_A          156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G  232 (291)
T ss_dssp             HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred             HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence            99874  543211   22334445569999999999988653   778899999999999999999999999998743 3


Q ss_pred             CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhhccC
Q 020976          285 LKSAQKAVVDGLRHSGCRRE-AKKIQSKIRMAKISH  319 (319)
Q Consensus       285 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~i~h  319 (319)
                      ++.++..++..+...|+.++ +.++++++.+.+..|
T Consensus       233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence            78899999999999999976 678999998877665

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.85  E-value=3.5e-21  Score=167.22  Aligned_cols=151  Identities=14%  Similarity=0.223  Sum_probs=125.8

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQK---HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT   85 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   85 (319)
                      -..|||++|++|++.|++++|.++|++|.+   .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            456899999999999999999999988764   57899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCh-hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC------hhhHHHHHH
Q 020976           86 IMKCCFRNRKY-KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD------IVSYNTLIN  158 (319)
Q Consensus        86 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~  158 (319)
                      +|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+.    .+++..+++ ..+..|+      ..+...|..
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            99999999985 78999999999999999999999998765553    344444444 2234433      444555666


Q ss_pred             HHHhcC
Q 020976          159 LYCKEG  164 (319)
Q Consensus       159 ~~~~~~  164 (319)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            666554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.83  E-value=3.1e-20  Score=149.53  Aligned_cols=238  Identities=12%  Similarity=0.083  Sum_probs=64.3

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 020976           22 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE  101 (319)
Q Consensus        22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  101 (319)
                      +.|++++|.++++++.      ++.+|..++.++.+.|++++|.+.|.+.      +|..+|..++.++...|++++|+.
T Consensus        15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            3444555555555552      1235555555555555555555555431      344455555555555555555555


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 020976          102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF  181 (319)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  181 (319)
                      +++...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|.+++|...|..+     
T Consensus        83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----  148 (449)
T 1b89_A           83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----  148 (449)
T ss_dssp             ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred             HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence            44444432  3334455555555555555555554442       134445555555555555555555555543     


Q ss_pred             CCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHH
Q 020976          182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNL  261 (319)
Q Consensus       182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~  261 (319)
                          ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+. ..+.-...++..|
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Y  217 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYY  217 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHH
Confidence                24555555555555555555555544      134555555555555555555544444333 2333334455555


Q ss_pred             HccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 020976          262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR  297 (319)
Q Consensus       262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  297 (319)
                      .+.|++++|..+++..+... +-....|+.+..+|+
T Consensus       218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~  252 (449)
T 1b89_A          218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS  252 (449)
T ss_dssp             HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence            55555555555555554332 223344444444443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.82  E-value=4.6e-20  Score=160.30  Aligned_cols=150  Identities=17%  Similarity=0.258  Sum_probs=118.9

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHH
Q 020976           80 AITYTTIMKCCFRNRKYKLGLEILSAMKR---KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL  156 (319)
Q Consensus        80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  156 (319)
                      ..+|+++|.+|++.|++++|.++|++|.+   .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            45799999999999999999999988764   478999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCH-HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC------hhhHHHHHHH
Q 020976          157 INLYCKEGKL-EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN------LEAYNCIVDR  229 (319)
Q Consensus       157 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~  229 (319)
                      |.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.    .+.+..+++ ..++.|+      ..+...|.+.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl  281 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV  281 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence            9999999884 78899999999999999999999887655443    333333333 2234443      3444556666


Q ss_pred             HHhcC
Q 020976          230 LGKDG  234 (319)
Q Consensus       230 ~~~~~  234 (319)
                      |.+.+
T Consensus       282 ~s~d~  286 (1134)
T 3spa_A          282 YAKDG  286 (1134)
T ss_dssp             HCCCS
T ss_pred             HccCC
Confidence            66554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.82  E-value=1e-15  Score=129.40  Aligned_cols=273  Identities=13%  Similarity=0.065  Sum_probs=156.0

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cC
Q 020976           23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NR   94 (319)
Q Consensus        23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~   94 (319)
                      .+++++|+..|++..+.|   +...+..+...|..    .+++++|.++|++..+.|   +...+..+...|..    .+
T Consensus       128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~  201 (490)
T 2xm6_A          128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER  201 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence            344444444444444332   23334444444443    344444444444444432   34444444444444    44


Q ss_pred             ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----cCCH
Q 020976           95 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----EGKL  166 (319)
Q Consensus        95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~  166 (319)
                      ++++|.+.|++..+.+   ++..+..+...|..    .+++++|..+|++..+.|   +...+..+...+..    .+++
T Consensus       202 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~  275 (490)
T 2xm6_A          202 NDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP  275 (490)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence            5555555555544443   23334444444443    455555555555555442   33344455555555    5666


Q ss_pred             HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc-----CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---CHHH
Q 020976          167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKA-----GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG---KIDH  238 (319)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~  238 (319)
                      ++|..+|++..+.|   +...+..+...+...     +++++|...+++..+.+   +...+..+...|...|   ++++
T Consensus       276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~  349 (490)
T 2xm6_A          276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKK  349 (490)
T ss_dssp             HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHH
Confidence            66666666665543   334455555555554     67777777777766654   3345555666665545   6777


Q ss_pred             HHHHHHhhccC-CchhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 020976          239 AINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQ  309 (319)
Q Consensus       239 a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~  309 (319)
                      |.+.|++.... ++..+..+...|..    .+++++|...|++..+.|   ++..+..+...|..    .++.++|..+|
T Consensus       350 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  426 (490)
T 2xm6_A          350 AVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWF  426 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            77777766544 66777777777777    778888888888887764   45667777777777    78888888888


Q ss_pred             HHHHhhh
Q 020976          310 SKIRMAK  316 (319)
Q Consensus       310 ~~~~~~~  316 (319)
                      ++..+.+
T Consensus       427 ~~A~~~~  433 (490)
T 2xm6_A          427 DTASTND  433 (490)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHCC
Confidence            8877665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.82  E-value=3.1e-19  Score=143.79  Aligned_cols=266  Identities=9%  Similarity=-0.006  Sum_probs=133.4

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      +++.+|..+..++.+.|++++|++.|.+.      +|..+|..++..+...|++++|.+.++..++.  .+++.+.+.++
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li  101 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI  101 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence            45579999999999999999999999653      57789999999999999999999988877764  45678899999


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976           88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE  167 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  167 (319)
                      .+|.+.|+++++.++++       .|+..+|..+...|...|.+++|...|..+         ..|..++.++.+.|+++
T Consensus       102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq  165 (449)
T 1b89_A          102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ  165 (449)
T ss_dssp             -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred             HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence            99999999999988884       467789999999999999999999999976         46999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      +|.+.+.++      .++.+|..++.+|...|+++.|......+     ...+.-...++..|.+.|++++|..+++...
T Consensus       166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999988      27889999999999999999996554432     2333445678899999999999999999877


Q ss_pred             cC---CchhHHHHHHHHHccCChhHHHHHHHHHHH-cCCcc------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 020976          248 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK-SGVRI------LKSAQKAVVDGLRHSGCRREAKKIQ  309 (319)
Q Consensus       248 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~  309 (319)
                      ..   ....|+-+...|++- ++++..+.++.... .+++|      +...|..+.-.|.+.++++.|....
T Consensus       235 ~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          235 GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             TSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            55   455677777777664 34444444443332 23444      4568899999999999999887643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.82  E-value=5.5e-18  Score=127.38  Aligned_cols=198  Identities=15%  Similarity=0.024  Sum_probs=105.9

Q ss_pred             CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976            7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI   86 (319)
Q Consensus         7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   86 (319)
                      +++...+..+...+.+.|++++|+..|++..+..+. +...+..+...+.+.|++++|...|++..+..+. +...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence            566677777777777777777777777777765332 6667777777777777777777777777765322 55666666


Q ss_pred             HHHHHhc-----------CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH
Q 020976           87 MKCCFRN-----------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT  155 (319)
Q Consensus        87 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  155 (319)
                      ..++...           |++++|+..+++..+.. +-+...+..+..++...|++++|+..|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            6666666           55555555555554442 2234444444455555555555555555554443  34444445


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHH
Q 020976          156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY  210 (319)
Q Consensus       156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  210 (319)
                      +..++...|++++|...|++..+..+. +...+..+...+...|++++|...+++
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            555555555555555555555443222 333444444444555555555444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.81  E-value=2.2e-15  Score=127.39  Aligned_cols=289  Identities=13%  Similarity=0.053  Sum_probs=146.4

Q ss_pred             chHhHHHHHHHHhh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCh
Q 020976            9 CTATFNIMLNGLCK----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNA   80 (319)
Q Consensus         9 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~   80 (319)
                      ++.++..+...|..    .+++++|+..|++..+.|   +...+..|...|..    .+++++|.++|++..+.|   +.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            44555555555555    566666666666655542   34455555555555    556666666666655542   34


Q ss_pred             hhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCCCccChhh
Q 020976           81 ITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVS  152 (319)
Q Consensus        81 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  152 (319)
                      ..+..+...|..    .+++++|.+.|++..+.|   ++..+..+...|..    .+++++|...|++..+.|   +...
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a  185 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS  185 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            445555555555    455566666665555544   23344444444544    445555555555555442   3344


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC---------------------------------CcHHhHHHHHHHH
Q 020976          153 YNTLINLYCK----EGKLEAAYLLLDEMEKQGFE---------------------------------CDKYTHTILIDGL  195 (319)
Q Consensus       153 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~  195 (319)
                      +..+...|..    .++.++|.++|++..+.+..                                 .+...+..+...+
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y  265 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL  265 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4444444444    45555555555554443210                                 1222333333333


Q ss_pred             hc----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHhhccC-CchhHHHHHHHHHccC
Q 020976          196 CK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD-----GKIDHAINVFESMEVK-DSFTYSSMVHNLCKAK  265 (319)
Q Consensus       196 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~  265 (319)
                      ..    .+++++|...|+...+.+   +...+..+...|...     +++++|...+++.... ++..+..+...|...|
T Consensus       266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g  342 (490)
T 2xm6_A          266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG  342 (490)
T ss_dssp             HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Confidence            33    445555555555544432   223344444444444     5555555555554433 4444445555554433


Q ss_pred             ---ChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhh
Q 020976          266 ---RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQSKIRMA  315 (319)
Q Consensus       266 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~  315 (319)
                         ++++|.++|++..+.|   ++..+..+...|..    .+++++|.++|++..+.
T Consensus       343 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  396 (490)
T 2xm6_A          343 SEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ  396 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence               4555666666555542   34455555666655    56666666666665444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=2.6e-17  Score=126.98  Aligned_cols=224  Identities=13%  Similarity=0.039  Sum_probs=146.7

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CC----hhhH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PN----AITY   83 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~   83 (319)
                      ...|..+...+...|++++|+..|++..+..  .+..++..+...+...|++++|.+.+++.......  ++    ..++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            4567777778888888888888888877765  57777778888888888888888888777653211  11    4667


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc
Q 020976           84 TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE  163 (319)
Q Consensus        84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  163 (319)
                      ..+..++...|++++|.+.+++..+.  .|+       ...+...|++++|...++++.... +.+...+..+...+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc--Cch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence            77777777777787787777777765  233       234555667777777777776642 33445566666677777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976          164 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF  243 (319)
Q Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  243 (319)
                      |++++|...+++..+.... +...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+
T Consensus       153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  230 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL  230 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            7777777777776665332 45566666666666666666666666666543 333455555555555555555555555


Q ss_pred             Hhhc
Q 020976          244 ESME  247 (319)
Q Consensus       244 ~~~~  247 (319)
                      ++..
T Consensus       231 ~~a~  234 (258)
T 3uq3_A          231 DAAR  234 (258)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.80  E-value=1.6e-17  Score=124.78  Aligned_cols=200  Identities=13%  Similarity=0.005  Sum_probs=142.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH
Q 020976           42 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV  121 (319)
Q Consensus        42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  121 (319)
                      +++...+..+...+...|++++|...|++..+..+ .+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            45677788888888888888888888888887643 367788888888888888888888888888775 5566777888


Q ss_pred             HHHHHHc-----------CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH
Q 020976          122 IAAFVKI-----------GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI  190 (319)
Q Consensus       122 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  190 (319)
                      ..++...           |++++|+..+++..+.. |.+...+..+..++...|++++|...|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            8888888           88888888888877752 3356677777788888888888888888887766  46777777


Q ss_pred             HHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          191 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      +..++...|++++|...++...+.. +.+...+..+..++...|++++|...+++..
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            8888888888888888888877764 4456677777777778888888877776543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.79  E-value=1.4e-17  Score=129.85  Aligned_cols=245  Identities=9%  Similarity=-0.066  Sum_probs=131.1

Q ss_pred             hhcCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976           21 CKNRYTDNALRMFRGLQKHGFV---PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK   97 (319)
Q Consensus        21 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   97 (319)
                      ...|++++|++.|+++.+....   .+..++..+...+...|++++|...|+++..... .+..++..+..++...|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence            3456777777777777664221   1355667777777777777777777777766532 25666777777777777777


Q ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976           98 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME  177 (319)
Q Consensus        98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  177 (319)
                      +|.+.+++..+.. +.+...+..+..++...|++++|...++++...  .|+.......+..+...|++++|...+.+..
T Consensus        95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            7777777776653 334556666666666666676666666666653  2333333333344445566666666665555


Q ss_pred             HcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhH
Q 020976          178 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD---SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTY  254 (319)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  254 (319)
                      .... ++...+ .++..+...++.++|...+....+....   .+..++..+..++...|++++|...|++....++..+
T Consensus       172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  249 (275)
T 1xnf_A          172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF  249 (275)
T ss_dssp             HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence            4321 122222 2444444555555555555554432100   0023334444444444444444444444443333333


Q ss_pred             HHHHHHHHccCChhHHH
Q 020976          255 SSMVHNLCKAKRLPSAS  271 (319)
Q Consensus       255 ~~l~~~~~~~~~~~~a~  271 (319)
                      .....++...|++++|+
T Consensus       250 ~~~~~~~~~l~~~~~a~  266 (275)
T 1xnf_A          250 VEHRYALLELSLLGQDQ  266 (275)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhhH
Confidence            33333333334444333

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=3.4e-17  Score=126.30  Aligned_cols=223  Identities=14%  Similarity=0.068  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CC----cccH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT--FD----GFGY  118 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~  118 (319)
                      ...+..+...+...|++++|...|++..+..  .+..++..+..++...|++++|.+.+++..+....  ++    ...+
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            4677888888999999999999999998876  67888999999999999999999999988765311  11    4677


Q ss_pred             HHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc
Q 020976          119 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA  198 (319)
Q Consensus       119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  198 (319)
                      ..+...+...|++++|...|++....  .|+.       ..+...|++++|...++++....+. +...+..+...+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence            88888888999999999999988875  3342       3466678888999998888875322 456777888888888


Q ss_pred             CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHH
Q 020976          199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL  275 (319)
Q Consensus       199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~  275 (319)
                      |++++|...++...+.. +.+..++..+..++...|++++|...+++....   ++..|..+...+...|++++|...++
T Consensus       153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD  231 (258)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999998888764 456677888888888888888888888876533   56677788888888888888888888


Q ss_pred             HHHHc
Q 020976          276 SCLKS  280 (319)
Q Consensus       276 ~~~~~  280 (319)
                      +..+.
T Consensus       232 ~a~~~  236 (258)
T 3uq3_A          232 AARTK  236 (258)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.78  E-value=2.3e-16  Score=122.79  Aligned_cols=241  Identities=11%  Similarity=0.009  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc----HHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG----YCT  120 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~  120 (319)
                      ...+......+...|++++|...|++..+..+. +...+..+..++...|++++|++.+++..+.+  ++...    |..
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~   79 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEY   79 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHH
Confidence            345566677788888888888888888775432 55678888888888888888888888887742  33333    677


Q ss_pred             HHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC
Q 020976          121 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN  200 (319)
Q Consensus       121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  200 (319)
                      +...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+++..+..+. +...+..+...+...++
T Consensus        80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~  157 (272)
T 3u4t_A           80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKE  157 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHH
Confidence            7788888888888888888887752 335567788888888888888888888887765322 45556666623344458


Q ss_pred             hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHhhccC-----C------chhHHHHHHHHHccCC
Q 020976          201 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK-----D------SFTYSSMVHNLCKAKR  266 (319)
Q Consensus       201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~-----~------~~~~~~l~~~~~~~~~  266 (319)
                      +++|...++.+.+.. +.+...+..+..++...|+   +++|...+++....     +      ...|..+...|...|+
T Consensus       158 ~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  236 (272)
T 3u4t_A          158 YVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD  236 (272)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence            888888888887764 3345666666666666666   55566666554321     1      1356666777777777


Q ss_pred             hhHHHHHHHHHHHcCCccCHHHHHHH
Q 020976          267 LPSASKLLLSCLKSGVRILKSAQKAV  292 (319)
Q Consensus       267 ~~~a~~~~~~~~~~~~~~~~~~~~~l  292 (319)
                      +++|...++++.+... .+......+
T Consensus       237 ~~~A~~~~~~al~~~p-~~~~a~~~l  261 (272)
T 3u4t_A          237 KVKADAAWKNILALDP-TNKKAIDGL  261 (272)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCc-cHHHHHHHh
Confidence            7777777777776531 244444433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.78  E-value=1.6e-16  Score=123.67  Aligned_cols=237  Identities=13%  Similarity=0.025  Sum_probs=191.0

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhhHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN--AITYTTI   86 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l   86 (319)
                      |...+......+...|++++|+..|++..+.... +...+..+...+...|++++|.+.+++.......|+  ..+|..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence            3456667788999999999999999999886433 566889999999999999999999999988432222  2348899


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCH
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL  166 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  166 (319)
                      ..++...|++++|++.+++..+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+...+...+++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~  158 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEY  158 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999875 556788999999999999999999999999886 344566777777345555699


Q ss_pred             HHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC---hhHHHHHHHHHHhcC-CCCC------hhhHHHHHHHHHhcCCH
Q 020976          167 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN---IKGARLHLEYMNKIG-FDSN------LEAYNCIVDRLGKDGKI  236 (319)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~  236 (319)
                      ++|.+.|++..+..+. +...+..+...+...|+   +++|...+++..+.. -.|+      ..++..+...|...|++
T Consensus       159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (272)
T 3u4t_A          159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK  237 (272)
T ss_dssp             HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence            9999999999987433 46677778888888887   888999998887652 1233      25778889999999999


Q ss_pred             HHHHHHHHhhccC
Q 020976          237 DHAINVFESMEVK  249 (319)
Q Consensus       237 ~~a~~~~~~~~~~  249 (319)
                      ++|.+.+++....
T Consensus       238 ~~A~~~~~~al~~  250 (272)
T 3u4t_A          238 VKADAAWKNILAL  250 (272)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987644

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.78  E-value=7e-17  Score=125.87  Aligned_cols=243  Identities=9%  Similarity=-0.130  Sum_probs=194.3

Q ss_pred             hcCChhHHHHHHHHHhhCCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH
Q 020976           57 KAGRLRTARWILKELGDSGHA---PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE  133 (319)
Q Consensus        57 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  133 (319)
                      ..|++++|.+.|+++.+....   .+..++..+..++...|++++|.+.|+++.+.. +.+..++..+...+...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            457899999999999886321   246778889999999999999999999999875 5578889999999999999999


Q ss_pred             HHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHh
Q 020976          134 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK  213 (319)
Q Consensus       134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  213 (319)
                      |...|+++.... +.+..++..+..++...|++++|...++++.+..  |+..........+...|++++|...++....
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            999999999863 3467889999999999999999999999999864  4444444455555777999999999988877


Q ss_pred             cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC-------chhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCH
Q 020976          214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD-------SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK  286 (319)
Q Consensus       214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  286 (319)
                      .. +++... ..++..+...++.++|...+.+....+       ...+..+...|...|++++|...|+++....  |+.
T Consensus       173 ~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~  248 (275)
T 1xnf_A          173 KS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN  248 (275)
T ss_dssp             HS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred             cC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence            64 344444 447777888889999999999887662       4778889999999999999999999998763  422


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHH
Q 020976          287 SAQKAVVDGLRHSGCRREAKKIQ  309 (319)
Q Consensus       287 ~~~~~l~~~~~~~g~~~~a~~~~  309 (319)
                        +.....++...|++++|.+.+
T Consensus       249 --~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 --FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             --CHHHHHHHHHHHHHHHC----
T ss_pred             --HHHHHHHHHHHHHHHhhHHHH
Confidence              333355777889999988776

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.78  E-value=3.1e-15  Score=125.84  Aligned_cols=304  Identities=11%  Similarity=-0.073  Sum_probs=219.6

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-----
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKH--------GFVPELVTYNILIKGLCKAGRLRTARWILKELGDS-----   74 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----   74 (319)
                      .....||.+...+...|++++|++.|++..+.        .-+....+|+.+..+|...|++++|...+++....     
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34667999999999999999999999886542        11224678999999999999999999999887641     


Q ss_pred             C-CC-CChhhHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCCcccHHHHHHHH---HHcCchHHHHHHHHHHHhCCCc
Q 020976           75 G-HA-PNAITYTTIMKCCFRN--RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF---VKIGRLKEATDYMEQMVTDGVQ  147 (319)
Q Consensus        75 ~-~~-~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~  147 (319)
                      + .. ....++.....++...  +++++|++.|++..+.. |-++..+..+..++   ...++.++|++.+++..+.. +
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p  206 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P  206 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence            1 11 1345666666565554  56999999999998874 44555555555543   44577788999999888753 3


Q ss_pred             cChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhH
Q 020976          148 LDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY  223 (319)
Q Consensus       148 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  223 (319)
                      .+..++..+...+..    .+++++|.+.+++.....+. +...+..+...+...|++++|...+++..+.. +.+..++
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  284 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH  284 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence            355566666555544    46788999999998876544 66788899999999999999999999998874 4455667


Q ss_pred             HHHHHHHHhc-------------------CCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 020976          224 NCIVDRLGKD-------------------GKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG  281 (319)
Q Consensus       224 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  281 (319)
                      ..+..+|...                   +..+.|...+++....   +...+..+...|...|++++|...|++.++..
T Consensus       285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~  364 (472)
T 4g1t_A          285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE  364 (472)
T ss_dssp             HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence            6666665432                   2356677777765433   66788999999999999999999999999875


Q ss_pred             CccCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhh
Q 020976          282 VRILKS--AQKAVVD-GLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       282 ~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      ..|...  .+..+.. .....|+.++|+..+++..+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i  401 (472)
T 4g1t_A          365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI  401 (472)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            444321  2333332 345789999999999876543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.77  E-value=2.3e-15  Score=117.30  Aligned_cols=224  Identities=9%  Similarity=-0.016  Sum_probs=182.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYC  119 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  119 (319)
                      +..++..+...+...|++++|.+.|++..+.   -+...+..+...+..    .+++++|.+.|++..+.+   ++..+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            5677888888888999999999999998873   356778888888888    899999999999988875   667788


Q ss_pred             HHHHHHHH----cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHH
Q 020976          120 TVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTIL  191 (319)
Q Consensus       120 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  191 (319)
                      .+...|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            88888888    899999999999888864   66778888888888    899999999999888765   45566777


Q ss_pred             HHHHhc----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhccC-CchhHHHHHHHHH
Q 020976          192 IDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK-DSFTYSSMVHNLC  262 (319)
Q Consensus       192 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~  262 (319)
                      ...+..    .+++++|...+++..+.+   +...+..+...|..    .+++++|...|++.... ++..+..+...|.
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~  229 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            777777    888999999998888764   45667778888888    88888888888876655 5667777778888


Q ss_pred             c----cCChhHHHHHHHHHHHcCC
Q 020976          263 K----AKRLPSASKLLLSCLKSGV  282 (319)
Q Consensus       263 ~----~~~~~~a~~~~~~~~~~~~  282 (319)
                      .    .+++++|...+++..+.|.
T Consensus       230 ~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          230 NGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             cCCCcccCHHHHHHHHHHHHHcCC
Confidence            7    8888888888888887653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.77  E-value=4.6e-16  Score=126.21  Aligned_cols=245  Identities=12%  Similarity=0.063  Sum_probs=180.8

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR-LRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      ...|..+...+...|++++|++.|+++.+.... +..+|+.+..++...|+ +++|+..|+++...... +...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence            456777888888888899999998888876443 67788888888888886 88998888888876443 6788888888


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh-cCCHH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK-EGKLE  167 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  167 (319)
                      ++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..+++++... +-+...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence            8888888888888888888775 5577788888888888888888888888888763 3467778888888888 55546


Q ss_pred             HH-----HHHHHHHHHcCCCCcHHhHHHHHHHHhccC--ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC------
Q 020976          168 AA-----YLLLDEMEKQGFECDKYTHTILIDGLCKAG--NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG------  234 (319)
Q Consensus       168 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------  234 (319)
                      +|     ++.+++.....+. +...|..+...+...|  +++++...+..+ +. .+.+...+..+..+|.+.|      
T Consensus       253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~  329 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN  329 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence            66     4777777776443 5567777777777777  577888777776 33 2445566777777777653      


Q ss_pred             ---CHHHHHHHHHhh-ccCCc---hhHHHHHHHH
Q 020976          235 ---KIDHAINVFESM-EVKDS---FTYSSMVHNL  261 (319)
Q Consensus       235 ---~~~~a~~~~~~~-~~~~~---~~~~~l~~~~  261 (319)
                         ..++|.++++++ .+.|+   ..|..+...+
T Consensus       330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l  363 (382)
T 2h6f_A          330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSL  363 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence               247777777777 44443   3444444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.77  E-value=4.2e-15  Score=115.80  Aligned_cols=223  Identities=13%  Similarity=-0.014  Sum_probs=178.2

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITYT   84 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (319)
                      ++.++..+...+...|++++|++.|++..+.   .+..++..+...+..    .+++++|.+.|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            5667777888888888999999988888773   355677778888888    888899999888888764   677888


Q ss_pred             HHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCCCccChhhHHHH
Q 020976           85 TIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTL  156 (319)
Q Consensus        85 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  156 (319)
                      .+...+..    .+++++|++.|++..+.+   +...+..+...|..    .+++++|+..|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            88888888    888889998888888775   56677888888888    888899999888888865   55667777


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhc----cCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 020976          157 INLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVD  228 (319)
Q Consensus       157 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  228 (319)
                      ...+..    .+++++|...|++..+.+   +...+..+...+..    .+++++|...+++..+.+   +...+..+..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            788877    888899998888888764   45667777888888    888889988888888764   2566777778


Q ss_pred             HHHh----cCCHHHHHHHHHhhccC
Q 020976          229 RLGK----DGKIDHAINVFESMEVK  249 (319)
Q Consensus       229 ~~~~----~~~~~~a~~~~~~~~~~  249 (319)
                      +|..    .+++++|.+.|++....
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHHc
Confidence            8887    88888888888876544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.77  E-value=1.1e-16  Score=122.39  Aligned_cols=202  Identities=15%  Similarity=0.060  Sum_probs=136.4

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +...|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+... .+...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence            455677777778888888888888888877533 3677777888888888888888888888776532 36677777888


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA  168 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  168 (319)
                      .+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence            8888888888888888877664 4466677777778888888888888888877652 3356677777788888888888


Q ss_pred             HHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976          169 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG  215 (319)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  215 (319)
                      |...+++..+.... +..++..+...+...|++++|...++.+.+..
T Consensus       178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            88888887766432 56677777778888888888888888877653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.76  E-value=1.2e-15  Score=117.40  Aligned_cols=200  Identities=11%  Similarity=-0.006  Sum_probs=100.3

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC   90 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (319)
                      ..|..+...+...|++++|++.|+++.+... .+...+..+...+...|++++|.+.++++.+... .+...+..+...+
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence            4455555555555555555555555554322 2445555555555555555555555555554321 1444555555555


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976           91 FRNRKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA  169 (319)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  169 (319)
                      ...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence            55555555555555555411112 33344445555555555555555555554432 22344455555555555555555


Q ss_pred             HHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976          170 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI  214 (319)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  214 (319)
                      ...++++.+... .+...+..+...+...|++++|...++.+.+.
T Consensus       195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            555555544322 23344444555555555555555555555443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.76  E-value=1.7e-15  Score=114.24  Aligned_cols=204  Identities=7%  Similarity=-0.094  Sum_probs=161.8

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      .+...|..+...+...|++++|++.|+.+.+... .+...+..+...+...|++++|.+.++++..... .+..++..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~   83 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence            3566788888899999999999999998887643 3677888888899999999999999998887542 3677888888


Q ss_pred             HHHHhc-CChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976           88 KCCFRN-RKYKLGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK  165 (319)
Q Consensus        88 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (319)
                      ..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.... +.+...+..+..++...|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence            888899 99999999999888732222 35667778888888899999999998887752 3356778888888888999


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976          166 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI  214 (319)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  214 (319)
                      +++|...+++..+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            9999999988887644235666777777778888888888888888764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=3.4e-14  Score=121.28  Aligned_cols=64  Identities=13%  Similarity=0.109  Sum_probs=38.3

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS   74 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   74 (319)
                      +...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++...
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~   75 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK   75 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence            4455666665 355666666666666666542 235556666666666666666666666666553

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.75  E-value=2e-15  Score=127.01  Aligned_cols=303  Identities=10%  Similarity=-0.046  Sum_probs=209.5

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhC-----C-CC-CCHHHHHHHHHHHHhc--CChhHHHHHHHHHhhCCCCCC
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKH-----G-FV-PELVTYNILIKGLCKA--GRLRTARWILKELGDSGHAPN   79 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~-~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~   79 (319)
                      ...+|+.+...|...|++++|...+++..+.     + .. ....++..+..++.+.  +++++|.+.|++..+..+. +
T Consensus        93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~  171 (472)
T 4g1t_A           93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-N  171 (472)
T ss_dssp             THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-C
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-C
Confidence            4567999999999999999999999887542     1 11 1356676666666554  4699999999999886432 4


Q ss_pred             hhhHHHHHHHH---HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCCCccChhh
Q 020976           80 AITYTTIMKCC---FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVS  152 (319)
Q Consensus        80 ~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  152 (319)
                      +..+..+..++   ...++.++|++.+++..+.. +.+...+..+...+..    .+++++|.+.+++..... +.+..+
T Consensus       172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~  249 (472)
T 4g1t_A          172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDV  249 (472)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHH
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence            55665555543   44577888999999888764 4455666666555544    467889999999988763 456778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc-------------------CChhHHHHHHHHHHh
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA-------------------GNIKGARLHLEYMNK  213 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~  213 (319)
                      +..+...+...|++++|...+++..+..+. +..++..+...|...                   +..+.|...++...+
T Consensus       250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  328 (472)
T 4g1t_A          250 LRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE  328 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            899999999999999999999999987443 455666665554322                   235677778888777


Q ss_pred             cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc--h----hHHHHHH-HHHccCChhHHHHHHHHHHHcCC----
Q 020976          214 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS--F----TYSSMVH-NLCKAKRLPSASKLLLSCLKSGV----  282 (319)
Q Consensus       214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~----  282 (319)
                      .+ +.+..++..+...+...|++++|...|++....++  .    .+..+.. .+...|++++|+..+++.++...    
T Consensus       329 ~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~  407 (472)
T 4g1t_A          329 AN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE  407 (472)
T ss_dssp             HC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred             cC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence            64 55667888999999999999999999998765422  1    2222222 23467899999999888765421    


Q ss_pred             -------------------ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          283 -------------------RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       283 -------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                                         +.++.+|..+..+|...|++++|.+.|++..+.+
T Consensus       408 ~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          408 KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence                               2356788999999999999999999999877654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.75  E-value=1.2e-15  Score=123.85  Aligned_cols=246  Identities=11%  Similarity=0.028  Sum_probs=203.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK-YKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      ...|..+...+...|++++|++.++++...... +..+|+.+..++...|+ +++|+..|+++.+.. +-+...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            467888888999999999999999999986433 68889999999999996 999999999999875 567888999999


Q ss_pred             HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhc-cCChh
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK-AGNIK  202 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  202 (319)
                      ++...|++++|+..|+++.... +-+...|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence            9999999999999999999863 447888999999999999999999999999988655 77888889989888 56657


Q ss_pred             HH-----HHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHhhccC---CchhHHHHHHHHHccC-------
Q 020976          203 GA-----RLHLEYMNKIGFDSNLEAYNCIVDRLGKDG--KIDHAINVFESMEVK---DSFTYSSMVHNLCKAK-------  265 (319)
Q Consensus       203 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~-------  265 (319)
                      +|     ...+++.++.. +-+...|..+..++...|  ++++|.+.+.++ ..   ++..+..++..|.+.|       
T Consensus       253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence            77     47888888764 456678888888888888  689999999888 33   5667888888888864       


Q ss_pred             --ChhHHHHHHHHH-HHcCCcc-CHHHHHHHHHHHHh
Q 020976          266 --RLPSASKLLLSC-LKSGVRI-LKSAQKAVVDGLRH  298 (319)
Q Consensus       266 --~~~~a~~~~~~~-~~~~~~~-~~~~~~~l~~~~~~  298 (319)
                        ..++|+++++++ .+.  .| ....|..+...+..
T Consensus       331 ~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          331 EDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHH
Confidence              258999999998 554  34 44566666665543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.74  E-value=1.7e-16  Score=130.73  Aligned_cols=296  Identities=11%  Similarity=0.012  Sum_probs=226.2

Q ss_pred             CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCC
Q 020976            6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDS----GHA   77 (319)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~   77 (319)
                      ..+....+......+...|++++|+..|+++.+.+.. +    ..++..+...+...|++++|...+++....    +..
T Consensus         5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   83 (406)
T 3sf4_A            5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ   83 (406)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence            3456667788889999999999999999999886432 3    357888999999999999999999987542    212


Q ss_pred             C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----CCCcccHHHHHHHHHHcCc--------------------h
Q 020976           78 P-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-----TFDGFGYCTVIAAFVKIGR--------------------L  131 (319)
Q Consensus        78 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~--------------------~  131 (319)
                      | ...++..+...+...|++++|...+++..+...     .....++..+...+...|+                    +
T Consensus        84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~  163 (406)
T 3sf4_A           84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL  163 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence            2 255788888999999999999999998875410     1113467788889999999                    9


Q ss_pred             HHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCc----HHhHHHHHHHHhccCCh
Q 020976          132 KEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECD----KYTHTILIDGLCKAGNI  201 (319)
Q Consensus       132 ~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~  201 (319)
                      ++|...+++....    +.. ....++..+...+...|++++|...+++..+... .++    ..++..+...+...|++
T Consensus       164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  243 (406)
T 3sf4_A          164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF  243 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence            9999998877542    111 2245688889999999999999999998875311 111    23788888999999999


Q ss_pred             hHHHHHHHHHHhcC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---------CchhHHHHHHHHHccCCh
Q 020976          202 KGARLHLEYMNKIG----FDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRL  267 (319)
Q Consensus       202 ~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~  267 (319)
                      ++|...+++..+..    ..+ ...++..+...+...|++++|...+++....         ...++..+...|...|++
T Consensus       244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  323 (406)
T 3sf4_A          244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH  323 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            99999999887541    111 1457788899999999999999999887543         255788889999999999


Q ss_pred             hHHHHHHHHHHHc----CCcc-CHHHHHHHHHHHHhcCCH
Q 020976          268 PSASKLLLSCLKS----GVRI-LKSAQKAVVDGLRHSGCR  302 (319)
Q Consensus       268 ~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~  302 (319)
                      ++|...+++..+.    +..+ ...++..+...+...|+.
T Consensus       324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            9999999987654    2222 345677777888877765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.74  E-value=2.5e-15  Score=115.57  Aligned_cols=198  Identities=13%  Similarity=-0.014  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA  124 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  124 (319)
                      ...+..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            3445555556666666666666666655542 2245555555556666666666666666555543 3344455555555


Q ss_pred             HHHcCchHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976          125 FVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG  203 (319)
Q Consensus       125 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  203 (319)
                      +...|++++|...++++...+..| +...+..+..++...|++++|...+++..+.... +...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence            555555555555555555421112 3344445555555555555555555555544222 34444455555555555555


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhh
Q 020976          204 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM  246 (319)
Q Consensus       204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  246 (319)
                      |...++.+.+.. +.+...+..+...+...|++++|.+.++++
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            555555544432 223333444444444444444444444433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.73  E-value=3.3e-15  Score=112.63  Aligned_cols=199  Identities=9%  Similarity=-0.040  Sum_probs=131.5

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHH
Q 020976           79 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN  158 (319)
Q Consensus        79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  158 (319)
                      +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            45566777777777788888888777777654 4456667777777777777777777777776652 335566777777


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 020976          159 LYCKE-GKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI  236 (319)
Q Consensus       159 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  236 (319)
                      .+... |++++|...++++.+.+..| +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence            77777 77777777777777622222 24566666777777777777777777776653 33456666666666777777


Q ss_pred             HHHHHHHHhhcc----CCchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          237 DHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       237 ~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      ++|...++++..    .+...+..+...+...|+.+++..+++.+...
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            777766665542    24445555555566666666666666666543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.73  E-value=4e-16  Score=119.21  Aligned_cols=200  Identities=13%  Similarity=0.053  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA  124 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  124 (319)
                      ...|..+...+...|++++|...|+++.+... .+...+..+..++...|++++|.+.++++.+.. +.+...+..+...
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~  100 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV  100 (243)
T ss_dssp             -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence            34455555555555555555555555554321 244555555555555555555555555555442 2334444445555


Q ss_pred             HHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHH
Q 020976          125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA  204 (319)
Q Consensus       125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  204 (319)
                      +...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence            555555555555555554431 223444444455555555555555555554443221 333444444444444444444


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      ...++.+.+.. +.                               ++.++..+...|...|++++|...++++.+.
T Consensus       179 ~~~~~~~~~~~-~~-------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          179 LSQFAAVTEQD-PG-------------------------------HADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHC-TT-------------------------------CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cc-------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            44444444332 12                               3344555555555566666666666655554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.73  E-value=2.7e-16  Score=129.89  Aligned_cols=266  Identities=13%  Similarity=0.064  Sum_probs=136.4

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCChhhH
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKELGDS----GH-APNAITY   83 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~   83 (319)
                      +..+...+...|++++|+..|+++.+.+.. +.    .++..+...+...|++++|...+++....    +. +....++
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  129 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS  129 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence            444555566666777777777666654222 22    35566666666667777666666665431    11 1123455


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCcccHHHHHHHHHHcCc-----------------hHHHHHHHHHH
Q 020976           84 TTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDGFGYCTVIAAFVKIGR-----------------LKEATDYMEQM  141 (319)
Q Consensus        84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~  141 (319)
                      ..+...+...|++++|...+++..+..     .+....++..+...+...|+                 +++|+..+++.
T Consensus       130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  209 (411)
T 4a1s_A          130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN  209 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence            566666666666666666666654321     01123345555566666666                 66666665554


Q ss_pred             HhC----CC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HHhHHHHHHHHhccCChhHHHHHHHHH
Q 020976          142 VTD----GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CD----KYTHTILIDGLCKAGNIKGARLHLEYM  211 (319)
Q Consensus       142 ~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~  211 (319)
                      ...    +. +....++..+...+...|++++|...+++..+.... ++    ...+..+...+...|++++|...+++.
T Consensus       210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (411)
T 4a1s_A          210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT  289 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            331    11 111234555556666666666666666655432110 01    124555555566666666666666555


Q ss_pred             HhcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---------CchhHHHHHHHHHccCChhHHHHHHHHH
Q 020976          212 NKIGFD-----SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSC  277 (319)
Q Consensus       212 ~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~  277 (319)
                      .+....     ....++..+..++...|++++|...+++....         ...++..+...|...|++++|...+++.
T Consensus       290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  369 (411)
T 4a1s_A          290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH  369 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            432100     01234445555555555555555555544321         1224444455555555555555555554


Q ss_pred             HH
Q 020976          278 LK  279 (319)
Q Consensus       278 ~~  279 (319)
                      .+
T Consensus       370 l~  371 (411)
T 4a1s_A          370 LQ  371 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.73  E-value=4.8e-16  Score=128.38  Aligned_cols=270  Identities=16%  Similarity=0.088  Sum_probs=210.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCc
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA----ITYTTIMKCCFRNRKYKLGLEILSAMKRK----G-YTFDG  115 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~  115 (319)
                      ...+..+...+...|++++|...|+++.+.... +.    ..+..+...+...|++++|...+++..+.    + .+...
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            345566778889999999999999999886332 33    47888899999999999999999988653    1 12345


Q ss_pred             ccHHHHHHHHHHcCchHHHHHHHHHHHhC----C-CccChhhHHHHHHHHHhcCC-----------------HHHHHHHH
Q 020976          116 FGYCTVIAAFVKIGRLKEATDYMEQMVTD----G-VQLDIVSYNTLINLYCKEGK-----------------LEAAYLLL  173 (319)
Q Consensus       116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~  173 (319)
                      ..+..+...+...|++++|...+++....    + .+....++..+...+...|+                 +++|.+.+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            66788888999999999999999987664    1 12234578888999999999                 99999999


Q ss_pred             HHHHHc----CCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHH
Q 020976          174 DEMEKQ----GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-SN----LEAYNCIVDRLGKDGKIDHAINVF  243 (319)
Q Consensus       174 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~  243 (319)
                      ++..+.    +..+ ...++..+...+...|++++|...+++..+.... ++    ..++..+..+|...|++++|...+
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            887542    1111 2347788889999999999999999988764210 11    237788899999999999999999


Q ss_pred             HhhccC---------CchhHHHHHHHHHccCChhHHHHHHHHHHHcC----Cc-cCHHHHHHHHHHHHhcCCHHHHHHHH
Q 020976          244 ESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG----VR-ILKSAQKAVVDGLRHSGCRREAKKIQ  309 (319)
Q Consensus       244 ~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~  309 (319)
                      ++....         ...++..+...|...|++++|...+++.+...    .. .....+..+...|...|++++|.+.+
T Consensus       287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  366 (411)
T 4a1s_A          287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA  366 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            877643         24678888999999999999999999887641    11 12457888899999999999999999


Q ss_pred             HHHHhh
Q 020976          310 SKIRMA  315 (319)
Q Consensus       310 ~~~~~~  315 (319)
                      ++..+.
T Consensus       367 ~~al~~  372 (411)
T 4a1s_A          367 EQHLQL  372 (411)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.72  E-value=1.4e-15  Score=125.13  Aligned_cols=273  Identities=16%  Similarity=0.111  Sum_probs=211.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-
Q 020976           42 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN----AITYTTIMKCCFRNRKYKLGLEILSAMKRK----GYT-  112 (319)
Q Consensus        42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-  112 (319)
                      .+....+......+...|++++|...|++....... +    ..++..+...+...|++++|...+++....    +-. 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            345667778888999999999999999999886322 3    357888889999999999999999987543    211 


Q ss_pred             CCcccHHHHHHHHHHcCchHHHHHHHHHHHhC----CC-ccChhhHHHHHHHHHhcCC--------------------HH
Q 020976          113 FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GV-QLDIVSYNTLINLYCKEGK--------------------LE  167 (319)
Q Consensus       113 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~--------------------~~  167 (319)
                      ....++..+...+...|++++|...+++....    +. .....++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            22456778888999999999999999987763    11 1114478888899999999                    99


Q ss_pred             HHHHHHHHHHHc----CCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCCHH
Q 020976          168 AAYLLLDEMEKQ----GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DSN----LEAYNCIVDRLGKDGKID  237 (319)
Q Consensus       168 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~  237 (319)
                      +|...+.+....    +..| ...++..+...+...|++++|...+++..+... .++    ..++..+...+...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999999887542    1111 234678888899999999999999998876410 111    237888899999999999


Q ss_pred             HHHHHHHhhccC---------CchhHHHHHHHHHccCChhHHHHHHHHHHHcC----Ccc-CHHHHHHHHHHHHhcCCHH
Q 020976          238 HAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG----VRI-LKSAQKAVVDGLRHSGCRR  303 (319)
Q Consensus       238 ~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~  303 (319)
                      +|...+++....         ...++..+...|...|++++|...+++..+..    ..+ ...++..+...|...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            999999887533         15578888999999999999999999887641    111 2567888899999999999


Q ss_pred             HHHHHHHHHHhh
Q 020976          304 EAKKIQSKIRMA  315 (319)
Q Consensus       304 ~a~~~~~~~~~~  315 (319)
                      +|.+.+++..+.
T Consensus       325 ~A~~~~~~al~~  336 (406)
T 3sf4_A          325 QAMHFAEKHLEI  336 (406)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999886543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.71  E-value=1.1e-15  Score=122.36  Aligned_cols=277  Identities=12%  Similarity=0.017  Sum_probs=156.2

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-Ch
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDS----GHAP-NA   80 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~   80 (319)
                      ...+......+...|++++|+..|+++.+.... +    ...+..+...+...|++++|.+.+++....    +..| ..
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            344556667788888888888888888775322 3    356778888888888888888888876542    1111 24


Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----cccHHHHHHHHHHcCc--------------------hHHHH
Q 020976           81 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FD----GFGYCTVIAAFVKIGR--------------------LKEAT  135 (319)
Q Consensus        81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~--------------------~~~a~  135 (319)
                      .++..+...+...|++++|...+++..+.... ++    ..++..+...+...|+                    +++|.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            56677777788888888888887776543100 11    2255666667777777                    66666


Q ss_pred             HHHHHHHhC----CC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCcHHhHHHHHHHHhccCChhHHH
Q 020976          136 DYMEQMVTD----GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-----ECDKYTHTILIDGLCKAGNIKGAR  205 (319)
Q Consensus       136 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~  205 (319)
                      ..+++....    +. +.....+..+...+...|++++|...+++..+...     .....++..+...+...|++++|.
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  243 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  243 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            666655431    11 11123455555666666666666666665543210     001124444445555555555555


Q ss_pred             HHHHHHHhcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHc----
Q 020976          206 LHLEYMNKIGFD-SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS----  280 (319)
Q Consensus       206 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----  280 (319)
                      ..+++..+.... ++..                           ....++..+...+...|++++|...+++....    
T Consensus       244 ~~~~~al~~~~~~~~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          244 EYYKKTLLLARQLKDRA---------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HHHHHHHHHHHHTTCHH---------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchh---------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence            555544332000 0000                           01234444555555566666666655555432    


Q ss_pred             CCc-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          281 GVR-ILKSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       281 ~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      +.. ....++..+...|.+.|++++|.+.+++..+
T Consensus       297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            111 1133555666667777777777777766544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.71  E-value=1.4e-15  Score=121.77  Aligned_cols=237  Identities=16%  Similarity=0.102  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCccc
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPN----AITYTTIMKCCFRNRKYKLGLEILSAMKRK----GY-TFDGFG  117 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~  117 (319)
                      .+......+...|++++|...|+++.+.... +    ...+..+...+...|++++|.+.+++..+.    +. +.....
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            3445556667777777777777777764322 2    345666777777777777777777665432    11 112344


Q ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 020976          118 YCTVIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGK--------------------LEAAYLL  172 (319)
Q Consensus       118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~  172 (319)
                      +..+...+...|++++|...+++....    +.+ ....++..+...+...|+                    +++|.+.
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            555666666667777776666665442    000 012245555555555555                    5555555


Q ss_pred             HHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--
Q 020976          173 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--  249 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--  249 (319)
                      +++.....                               ...+. +....++..+...+...|++++|...+++....  
T Consensus       166 ~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          166 YEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            54433210                               00000 011234444555555555655555555544321  


Q ss_pred             -------CchhHHHHHHHHHccCChhHHHHHHHHHHHc----CCcc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          250 -------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS----GVRI-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       250 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                             ...++..+...+...|++++|...+++....    +..+ ...++..+...+...|++++|...+++....
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  292 (338)
T 3ro2_A          215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  292 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence                   1235666777778888888888888776643    1111 1567788889999999999999999887543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.69  E-value=1.5e-14  Score=118.33  Aligned_cols=291  Identities=12%  Similarity=-0.013  Sum_probs=208.5

Q ss_pred             HhhcCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHH--HHhcCChhHHH-----------HHHHHHhhCCCCCChhh
Q 020976           20 LCKNRYTDNALRMFRGLQKH--GFVPE--LVTYNILIKG--LCKAGRLRTAR-----------WILKELGDSGHAPNAIT   82 (319)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~   82 (319)
                      +.+.+++++|..+++++.+.  .+..|  ...|-.++..  ..-.++++.+.           +.++.+....  .+...
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~   99 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG   99 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence            56789999999999998663  23233  3333444332  11233444444           6666665421  11121


Q ss_pred             ------HHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CcccHHHHHHHHHHcCchHHHHHHHHHHHhC--CC---
Q 020976           83 ------YTTIMKCCFRNRKYKLGLEILSAMKRK----GYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD--GV---  146 (319)
Q Consensus        83 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---  146 (319)
                            +......+...|++++|...+++..+.    +-++ ...++..+...+...|+++.|...+++....  ..   
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence                  222556678899999999999998764    1111 3467888889999999999999999988763  11   


Q ss_pred             -ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C----cHHhHHHHHHHHhccCChhHHHHHHHHHHhc----CC
Q 020976          147 -QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-C----DKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GF  216 (319)
Q Consensus       147 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~  216 (319)
                       +....+++.+..+|...|++++|.+.+++..+.... +    ...++..+...|...|++++|...+++..+.    +.
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence             112357888899999999999999999988753111 1    1247888999999999999999999998873    33


Q ss_pred             -CCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----Cc---hhHHHHHHHHHccCC---hhHHHHHHHHHHHcCCcc
Q 020976          217 -DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DS---FTYSSMVHNLCKAKR---LPSASKLLLSCLKSGVRI  284 (319)
Q Consensus       217 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~  284 (319)
                       +....++..+..++...|++++|...+++....     ++   ..+..+...+...|+   +++|+.++++.   +..|
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~  336 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA  336 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence             344577888999999999999999999876543     22   235667788888898   77777777765   3333


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          285 -LKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       285 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                       ....+..+...|...|++++|.+.+++..+.
T Consensus       337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence             3457778889999999999999999987654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.68  E-value=1.6e-13  Score=108.71  Aligned_cols=236  Identities=11%  Similarity=-0.021  Sum_probs=172.5

Q ss_pred             chHhHHHHHHHHhhc----CCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHH
Q 020976            9 CTATFNIMLNGLCKN----RYT----DNALRMFRGLQKHGFVPELVTYNILIKGLCK-------AGRL-------RTARW   66 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~   66 (319)
                      +...|...+....+.    ++.    ++|..+|++..... +.++..|..++..+..       .|++       ++|..
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~   85 (308)
T 2ond_A            7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN   85 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence            345677777765554    233    68888999988753 3377788888877753       4776       88999


Q ss_pred             HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cc-cHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976           67 ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD-GF-GYCTVIAAFVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~  144 (319)
                      +|++....-.+-+...|..++..+.+.|++++|.++|++..+.  .|+ .. .|..+...+.+.|++++|..+|++..+.
T Consensus        86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A           86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            9999887312225668888888888899999999999998875  443 33 7888888888889999999999988876


Q ss_pred             CCccChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC-CCC--Ch
Q 020976          145 GVQLDIVSYNTLINLYC-KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG-FDS--NL  220 (319)
Q Consensus       145 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~  220 (319)
                      . +++...|........ ..|++++|..+|+...+..+. +...+..++..+.+.|++++|..+|++..+.. ++|  ..
T Consensus       164 ~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~  241 (308)
T 2ond_A          164 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG  241 (308)
T ss_dssp             T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred             C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence            3 334444544333322 368899999999888776433 56778888888888899999999998888752 344  34


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976          221 EAYNCIVDRLGKDGKIDHAINVFESMEVK  249 (319)
Q Consensus       221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  249 (319)
                      ..|..++....+.|+.+.|..+++++...
T Consensus       242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          242 EIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            57777788888888888888888876643

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.68  E-value=1.6e-13  Score=108.72  Aligned_cols=231  Identities=6%  Similarity=-0.065  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHhc----CCh----hHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-------cCCh-------hHHHHH
Q 020976           45 LVTYNILIKGLCKA----GRL----RTARWILKELGDSGHAPNAITYTTIMKCCFR-------NRKY-------KLGLEI  102 (319)
Q Consensus        45 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~  102 (319)
                      ...|...+..-.+.    ++.    ++|..+|++..... +-+...|..++..+..       .|++       ++|..+
T Consensus         8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~   86 (308)
T 2ond_A            8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI   86 (308)
T ss_dssp             HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence            45566666654443    232    56777777777643 2366677777766653       4665       777777


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 020976          103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-IV-SYNTLINLYCKEGKLEAAYLLLDEMEKQG  180 (319)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  180 (319)
                      |++..+.-.+-+...|..++..+.+.|++++|..+|+++.+.  .|+ .. .|..++..+.+.|++++|..+|++..+..
T Consensus        87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  164 (308)
T 2ond_A           87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA  164 (308)
T ss_dssp             HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            777776311334456777777777777788888888777764  333 32 67777777777777777777777777653


Q ss_pred             CCCcHHhHHHHHHHH-hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-------Cch
Q 020976          181 FECDKYTHTILIDGL-CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-------DSF  252 (319)
Q Consensus       181 ~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~  252 (319)
                      .. +...|....... ...|++++|..+|+...+.. +.+...+..++..+.+.|++++|..+|++....       ...
T Consensus       165 p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~  242 (308)
T 2ond_A          165 RT-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE  242 (308)
T ss_dssp             TC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred             CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence            32 333443333222 12577777777777776653 345566777777777777777777777776542       233


Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          253 TYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      .|..++..+...|+.+.|..+++++.+.
T Consensus       243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          243 IWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            6666677777777777777777777664

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.67  E-value=3.4e-14  Score=103.77  Aligned_cols=167  Identities=16%  Similarity=0.090  Sum_probs=110.3

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      ++..|..+...+.+.|++++|++.|++..+..+. +..++..+...+.+.|++++|...+......... +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            4566777777777777777777777777665433 5666777777777777777777777776654322 4556666666


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA  168 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  168 (319)
                      .+...++++.+.+.+.+..... +.+...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            6667777777777777666553 4455566666666777777777777777666642 3345566666677777777777


Q ss_pred             HHHHHHHHHHc
Q 020976          169 AYLLLDEMEKQ  179 (319)
Q Consensus       169 a~~~~~~~~~~  179 (319)
                      |.+.|++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            77777766653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.66  E-value=2.6e-13  Score=122.39  Aligned_cols=252  Identities=14%  Similarity=0.153  Sum_probs=144.6

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK   95 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   95 (319)
                      +...+...|.+++|..+|++...     .....+.++.   ..+++++|.++.++..      +..+|..+..++...|+
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence            45556667777777777776421     2222233322   4456666666665431      35566667777777777


Q ss_pred             hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020976           96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE  175 (319)
Q Consensus        96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  175 (319)
                      +++|++.|.+.      -|...|..++.++.+.|++++|.+.+....+..  ++....+.++.+|.+.+++++...+.  
T Consensus      1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A         1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred             HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence            77777766442      245556666777777777777777776655542  23223334666666666666433322  


Q ss_pred             HHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHH
Q 020976          176 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYS  255 (319)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  255 (319)
                        +   .++...+..+...|...|++++|..+|...         ..|..+..++.+.|+++.|.+.+++.  .++.+|.
T Consensus      1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWk 1254 (1630)
T 1xi4_A         1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWK 1254 (1630)
T ss_pred             --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHH
Confidence              1   234445555666666667777776666653         25666666666667777776666655  3445555


Q ss_pred             HHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976          256 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI  312 (319)
Q Consensus       256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (319)
                      .+..+|...|++..|......     +..++..+..++..|.+.|.+++|+.+++..
T Consensus      1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A         1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred             HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            555555555555555544332     2234445555666666666666666666544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.66  E-value=1.2e-14  Score=121.97  Aligned_cols=207  Identities=13%  Similarity=-0.031  Sum_probs=97.6

Q ss_pred             hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHH
Q 020976           61 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY-KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYME  139 (319)
Q Consensus        61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  139 (319)
                      ++++.+.+++..... +.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344444444443321 12444444555555555555 55555555554442 2234445555555555555555555555


Q ss_pred             HHHhCCCccChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc--------CChh
Q 020976          140 QMVTDGVQLDIVSYNTLINLYCKE---------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA--------GNIK  202 (319)
Q Consensus       140 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~  202 (319)
                      +..+.  .|+...+..+..++...         |++++|.+.+++..+..+. +...+..+..++...        |+++
T Consensus       162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence            55443  23344444455555554         5555555555555444322 344444444444444        4555


Q ss_pred             HHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHH
Q 020976          203 GARLHLEYMNKIGFD---SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKL  273 (319)
Q Consensus       203 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~  273 (319)
                      +|...|++..+.. +   .+...+..+..+|...|++++|.+.|++....   +...+..+...+...|++++|++.
T Consensus       239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~  314 (474)
T 4abn_A          239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES  314 (474)
T ss_dssp             HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555554432 1   23444555555555555555555555544322   333444444445555555544443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.65  E-value=9.7e-14  Score=101.31  Aligned_cols=167  Identities=13%  Similarity=-0.024  Sum_probs=126.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      ++..|..+...|...|++++|.+.|++..+..+. +..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            5677888888888888888888888888775433 67778888888888888888888888877664 445566667777


Q ss_pred             HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG  203 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  203 (319)
                      .+...++++.+...+.+..... +.+...+..+..++.+.|++++|++.|++..+..+. +..++..+..++...|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence            7778888888888888777652 345667777788888888888888888887776443 56677777888888888888


Q ss_pred             HHHHHHHHHhc
Q 020976          204 ARLHLEYMNKI  214 (319)
Q Consensus       204 a~~~~~~~~~~  214 (319)
                      |...|++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            88888877764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.64  E-value=7.5e-15  Score=116.36  Aligned_cols=246  Identities=15%  Similarity=0.058  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhC-------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------C-
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDS-------GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK------G-  110 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-  110 (319)
                      ..++..+...+...|++++|..+++++.+.       ..+....++..+...+...|++++|...+++....      + 
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            455666666677777777777777666552       12223445566666666666666666666665543      1 


Q ss_pred             CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC------CC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 020976          111 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD------GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----  179 (319)
Q Consensus       111 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----  179 (319)
                      .+....++..+...+...|++++|...+++....      +. +.....+..+...+...|++++|.+++++..+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            1222344555555566666666666666655442      11 112334455555555556666665555555432    


Q ss_pred             --CCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976          180 --GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIG-------FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK  249 (319)
Q Consensus       180 --~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  249 (319)
                        +..| ...++..+...+...|++++|...++++.+..       ..+.......                        
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------  242 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------  242 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence              1111 12344445555555555555555555544320       0000000000                        


Q ss_pred             CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          250 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      ....+..+...+...+.+.++...++..... .+.+..++..+..+|.+.|++++|.+++++..+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          243 HAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             HHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            1111222233344456666677777666543 2335667888888888999999999888877654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.64  E-value=4.9e-15  Score=117.41  Aligned_cols=173  Identities=14%  Similarity=0.066  Sum_probs=139.7

Q ss_pred             CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-----
Q 020976            7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-------GFVPELVTYNILIKGLCKAGRLRTARWILKELGDS-----   74 (319)
Q Consensus         7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----   74 (319)
                      +.+..++..+...+...|++++|+.+|+++.+.       ..+....++..+...+...|++++|...+++....     
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            345677899999999999999999999998763       23335677889999999999999999999998763     


Q ss_pred             -CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC-
Q 020976           75 -GH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRK------GY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-  144 (319)
Q Consensus        75 -~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-  144 (319)
                       +. +....++..+...+...|++++|.+.+++..+.      +. +.....+..+...+...|++++|..+++++... 
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             22 224567888999999999999999999988764      21 234556778888999999999999999998764 


Q ss_pred             -----C-CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          145 -----G-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       145 -----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                           + .+....++..+..++...|++++|...++++.+.
T Consensus       184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 1 1223457888999999999999999999998753

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.64  E-value=2.3e-14  Score=119.55  Aligned_cols=281  Identities=11%  Similarity=0.025  Sum_probs=162.8

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL---RTARWILKELGDSGHAPNAITYTTIMKCCFR   92 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (319)
                      +...+.+.|++++|+++|++..+.|   +...+..+...|...|+.   ++|.++|++..+.    ++..+..+...+..
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence            5667788899999999999987765   334445566666667777   8888888888753    55566666664555


Q ss_pred             cC-----ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHH---HHHHHHHHHhCC-------------------
Q 020976           93 NR-----KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE---ATDYMEQMVTDG-------------------  145 (319)
Q Consensus        93 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~-------------------  145 (319)
                      .+     ++++|.+.|++..+.|.   +..+..|...|...+..+.   +.+.+......|                   
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~  158 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD  158 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred             CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence            44     67888888888877652   2245555555544333211   122222111111                   


Q ss_pred             -------------CccChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc----CChhHHH
Q 020976          146 -------------VQLDIVSYNTLINLYCKEG---KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA----GNIKGAR  205 (319)
Q Consensus       146 -------------~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~  205 (319)
                                   ...++..+..+...|...|   +.++|++.|++..+.|.. +...+..+...|...    +++++|.
T Consensus       159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~  237 (452)
T 3e4b_A          159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQ  237 (452)
T ss_dssp             GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence                         1123336677777777777   778888888888777643 444445566666544    5778888


Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHhhccC-CchhHHHHHHHHHccC-----ChhHHHHHHHH
Q 020976          206 LHLEYMNKIGFDSNLEAYNCIVDR-L--GKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAK-----RLPSASKLLLS  276 (319)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~-----~~~~a~~~~~~  276 (319)
                      ..|+... .   .+...+..+... +  ...+++++|.+.|++.... ++..+..+...|. .|     ++++|..+|++
T Consensus       238 ~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~  312 (452)
T 3e4b_A          238 ALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK  312 (452)
T ss_dssp             HHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred             HHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence            8888776 3   344555566655 3  4577888888888876655 6667777777776 44     78888888877


Q ss_pred             HHHcCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhh
Q 020976          277 CLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       277 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  316 (319)
                      ..    .-++..+..+...|..    ..++++|.++|++.-+.|
T Consensus       313 Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          313 AV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             TT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             Hh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            66    2355666666666655    348888888888776654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.64  E-value=1.4e-14  Score=121.56  Aligned_cols=215  Identities=9%  Similarity=-0.022  Sum_probs=183.1

Q ss_pred             ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCch-HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976           95 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL-KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL  173 (319)
Q Consensus        95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  173 (319)
                      .++++++.++...... +.+...+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3566777777766553 45778888899999999999 99999999998863 346788999999999999999999999


Q ss_pred             HHHHHcCCCCcHHhHHHHHHHHhcc---------CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CCH
Q 020976          174 DEMEKQGFECDKYTHTILIDGLCKA---------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD--------GKI  236 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~  236 (319)
                      ++..+.  .|+...+..+...+...         |++++|...+++..+.. +.+...+..+..+|...        |++
T Consensus       161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            999986  46678899999999999         99999999999999875 55678899999999988        999


Q ss_pred             HHHHHHHHhhcc------CCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020976          237 DHAINVFESMEV------KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS  310 (319)
Q Consensus       237 ~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  310 (319)
                      ++|...|++...      .++..|..+..+|...|++++|...|++..+... .+...+..+..++...|++++|.+.+.
T Consensus       238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999998764      3667899999999999999999999999988643 366788889999999999999998776


Q ss_pred             HHHhh
Q 020976          311 KIRMA  315 (319)
Q Consensus       311 ~~~~~  315 (319)
                      +++..
T Consensus       317 ~~~~~  321 (474)
T 4abn_A          317 KTKPK  321 (474)
T ss_dssp             TCCHH
T ss_pred             cccCc
Confidence            65443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.63  E-value=7.9e-13  Score=119.30  Aligned_cols=251  Identities=13%  Similarity=0.075  Sum_probs=195.6

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 020976           22 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE  101 (319)
Q Consensus        22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  101 (319)
                      ..+++++|.++.++.      -+..+|..+..++...|++++|.+.|.+.      -|...|..++.++.+.|++++|.+
T Consensus      1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred             HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence            556666666666644      25788999999999999999999999664      378888999999999999999999


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 020976          102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF  181 (319)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  181 (319)
                      ++....+..  +++...+.++.+|.+.+++++...+.    .   .++...|..+...|...|++++|..+|...     
T Consensus      1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A         1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred             HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence            999887764  44444556889999998888644432    2   346667778999999999999999999885     


Q ss_pred             CCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHH
Q 020976          182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNL  261 (319)
Q Consensus       182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~  261 (319)
                          ..|..+...+.+.|++++|.+.+++.      .+..+|..+..+|...|++..|...... ...++..+..++..|
T Consensus      1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A         1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYY 1290 (1630)
T ss_pred             ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHH
Confidence                37889999999999999999998876      3458888888999999999999988875 444677788899999


Q ss_pred             HccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh--cCCHHHHHHHHH
Q 020976          262 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH--SGCRREAKKIQS  310 (319)
Q Consensus       262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~  310 (319)
                      ...|.+++|+.+++..+... +-....|.-+...|++  .++..++.+.|.
T Consensus      1291 e~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1291 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred             HHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999999998877543 2244566555555544  445555555554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.62  E-value=2.3e-12  Score=104.94  Aligned_cols=295  Identities=14%  Similarity=0.029  Sum_probs=179.4

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CCh----hhH
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV----TYNILIKGLCKAGRLRTARWILKELGDSGHA-PNA----ITY   83 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~   83 (319)
                      +......+...|++++|...+++........+..    +++.+...+...|++++|.+.+++....... .+.    .++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3444556667888888888888877653222222    4566667777888888888888887652111 122    224


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CcccHHHHHHHHHHcCchHHHHHHHHHHHhCCC----ccChhh
Q 020976           84 TTIMKCCFRNRKYKLGLEILSAMKRK----GYT--F-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV----QLDIVS  152 (319)
Q Consensus        84 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~  152 (319)
                      ..+...+...|++++|.+.+++..+.    +.+  | ....+..+...+...|++++|...+++......    +....+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            55667777888888888888877643    211  1 223455566777788888888888887765321    112345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH-HhHH-----HHHHHHhccCChhHHHHHHHHHHhcCCCCC---hhhH
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK-YTHT-----ILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAY  223 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~  223 (319)
                      +..+...+...|++++|...+++.......++. ..+.     ..+..+...|++++|...++........+.   ...+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            667777788888888888888877643211111 1111     223346677888888888877665431111   1234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhccC---------CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHH
Q 020976          224 NCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD  294 (319)
Q Consensus       224 ~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  294 (319)
                      ..+...+...|++++|...+++....         ....+..+...+...|+.++|...+++......  .    ...+.
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~  330 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFIS  330 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHH
Confidence            56667777788888888777765432         112455556667777888888888877766421  1    11223


Q ss_pred             HHHhcCCHHHHHHHHHHHHhh
Q 020976          295 GLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       295 ~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      .+...|  +....+++++...
T Consensus       331 ~~~~~g--~~~~~ll~~~~~~  349 (373)
T 1hz4_A          331 HFVIEG--EAMAQQLRQLIQL  349 (373)
T ss_dssp             HHHTTH--HHHHHHHHHHHHT
T ss_pred             HHHHcc--HHHHHHHHHHHhC
Confidence            334444  4555566555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.61  E-value=2e-13  Score=111.64  Aligned_cols=230  Identities=9%  Similarity=-0.052  Sum_probs=179.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC------CCCcccHH
Q 020976           51 LIKGLCKAGRLRTARWILKELGDS----GHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY------TFDGFGYC  119 (319)
Q Consensus        51 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~  119 (319)
                      ....+...|++++|...|++....    +..+ ...++..+..++...|+++.|...+++..+..-      +....++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            566778899999999999998763    1111 346788899999999999999999998875310      11235678


Q ss_pred             HHHHHHHHcCchHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCcHHhHH
Q 020976          120 TVIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GF-ECDKYTHT  189 (319)
Q Consensus       120 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~  189 (319)
                      .+...|...|++++|...+++....    +.. ....++..+..+|...|++++|.+.+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            8889999999999999999988753    111 11247888999999999999999999998762    22 33456788


Q ss_pred             HHHHHHhccCChhHHHHHHHHHHhc----CCCCChhhHHHHHHHHHhcCC---HHHHHHHHHhhccC--CchhHHHHHHH
Q 020976          190 ILIDGLCKAGNIKGARLHLEYMNKI----GFDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK--DSFTYSSMVHN  260 (319)
Q Consensus       190 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~l~~~  260 (319)
                      .+...+...|++++|...+++..+.    +.+.....+..+...+...|+   +++|..++++....  ....+..+...
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  348 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY  348 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            8999999999999999999988764    212223345678888889998   88899999887543  44577788999


Q ss_pred             HHccCChhHHHHHHHHHHHc
Q 020976          261 LCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       261 ~~~~~~~~~a~~~~~~~~~~  280 (319)
                      |...|++++|...+++..+.
T Consensus       349 y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          349 YHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999988753

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.61  E-value=4.3e-13  Score=109.50  Aligned_cols=308  Identities=10%  Similarity=0.010  Sum_probs=212.6

Q ss_pred             CCCcchHhHHHHHHHH--hhcCChHHHHHHHHHHHhC--CCC--CCHHHHHHHHHHH--HhcCChhHHH---------HH
Q 020976            5 DLTPCTATFNIMLNGL--CKNRYTDNALRMFRGLQKH--GFV--PELVTYNILIKGL--CKAGRLRTAR---------WI   67 (319)
Q Consensus         5 g~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~~--~~~~~~~~l~~~~--~~~~~~~~a~---------~~   67 (319)
                      .+.|+..+-+.+-.-|  ...+++++|.++++++.+.  .+.  ++...|-.++..-  .-.+.+..+.         +.
T Consensus         5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~   84 (378)
T 3q15_A            5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL   84 (378)
T ss_dssp             -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence            3556666767776666  8899999999999987653  222  2333444444321  1123333333         66


Q ss_pred             HHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C----CcccHHHHHHHHHHcCchHHHHHHH
Q 020976           68 LKELGDSGHAPNA----ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-F----DGFGYCTVIAAFVKIGRLKEATDYM  138 (319)
Q Consensus        68 ~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~ll~~~~~~~~~~~a~~~~  138 (319)
                      ++.+.....+.+.    ..+......+...|++++|+..+++..+.... +    ...++..+...|...|+++.|...+
T Consensus        85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~  164 (378)
T 3q15_A           85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI  164 (378)
T ss_dssp             HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            6665432111111    12233445567899999999999998764211 1    2456778888999999999999999


Q ss_pred             HHHHhC----C-Ccc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CcHHhHHHHHHHHhccCChhHHHHH
Q 020976          139 EQMVTD----G-VQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GFE-CDKYTHTILIDGLCKAGNIKGARLH  207 (319)
Q Consensus       139 ~~~~~~----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~  207 (319)
                      ++....    + ..+ ...+++.+..+|...|++++|.+.+.+..+.    +.. ....++..+...+...|++++|...
T Consensus       165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~  244 (378)
T 3q15_A          165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH  244 (378)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            987753    1 111 2456788999999999999999999988753    111 1234678889999999999999999


Q ss_pred             HHHHHhc----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----C---chhHHHHHHHHHccCC---hhHHHH
Q 020976          208 LEYMNKI----GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----D---SFTYSSMVHNLCKAKR---LPSASK  272 (319)
Q Consensus       208 ~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~l~~~~~~~~~---~~~a~~  272 (319)
                      +++..+.    +.+....++..+..++.+.|++++|...+++....     +   ...+..+...+...++   +++|+.
T Consensus       245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~  324 (378)
T 3q15_A          245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS  324 (378)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            9998862    22334677888999999999999999999876532     2   2245556666777788   777777


Q ss_pred             HHHHHHHcCCcc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          273 LLLSCLKSGVRI-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       273 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      .+++   .+..| ....+..+...|...|++++|.+.|++..+.
T Consensus       325 ~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          325 YFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            7766   23333 3456778889999999999999999987654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.59  E-value=3.7e-12  Score=106.25  Aligned_cols=274  Identities=13%  Similarity=0.048  Sum_probs=175.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 020976           25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR---TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE  101 (319)
Q Consensus        25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  101 (319)
                      ++++|+..|++..+.|..   ..+..|...|...+..+   ++.+.+......|   ++..+..+...|...+.++.+.+
T Consensus        89 ~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~  162 (452)
T 3e4b_A           89 EHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD  162 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred             CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence            455666666665554322   24444444444433322   2333333333322   23444555555555554444443


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHHcC---chHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc----CCHHHHHHHHH
Q 020976          102 ILSAMKRKGYTFDGFGYCTVIAAFVKIG---RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE----GKLEAAYLLLD  174 (319)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~  174 (319)
                      ....+.+.-...++..+..|...|...|   +.++|+..|++..+.|. ++...+..+...|...    +++++|..+|+
T Consensus       163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~  241 (452)
T 3e4b_A          163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLE  241 (452)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            3332222212334447788888888888   88999999999888763 3455446677777554    68899999998


Q ss_pred             HHHHcCCCCcHHhHHHHHHH-H--hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHhh
Q 020976          175 EMEKQGFECDKYTHTILIDG-L--CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-----KIDHAINVFESM  246 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~  246 (319)
                      +.. .|   +...+..+... +  ...+++++|...|++..+.|   +...+..+...|. .|     ++++|...|++.
T Consensus       242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A  313 (452)
T 3e4b_A          242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA  313 (452)
T ss_dssp             HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred             HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence            887 32   44555666665 3  46789999999999988766   5566777777776 45     899999999988


Q ss_pred             ccCCchhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhh
Q 020976          247 EVKDSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       247 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  316 (319)
                      ...++..+..+...|..    ..++++|..+|++..+.|.   +.....+...|..    ..+.++|..+|++..+.|
T Consensus       314 a~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g  388 (452)
T 3e4b_A          314 VGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD  388 (452)
T ss_dssp             TTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred             hCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence            73377777777777766    3488899999999887664   3345556666653    457888888888776654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.58  E-value=2.1e-12  Score=105.15  Aligned_cols=268  Identities=9%  Similarity=-0.025  Sum_probs=194.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----ccc
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI----TYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FD----GFG  117 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~  117 (319)
                      ........+...|++++|...+++........+..    +++.+...+...|++++|.+.+++.....-. .+    ..+
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            44455566778999999999999988754322222    4667778888999999999999987753111 11    223


Q ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHhC----CCc--c-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--cHH
Q 020976          118 YCTVIAAFVKIGRLKEATDYMEQMVTD----GVQ--L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE--C--DKY  186 (319)
Q Consensus       118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~  186 (319)
                      +..+...+...|++++|...+++....    +.+  | ....+..+...+...|++++|...+++.......  +  ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            566778889999999999999987653    221  2 2345677888999999999999999998764322  1  235


Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHhhccCCc-------hh
Q 020976          187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL-EAYN-----CIVDRLGKDGKIDHAINVFESMEVKDS-------FT  253 (319)
Q Consensus       187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~  253 (319)
                      ++..+...+...|++++|...+++.......++. ..+.     ..+..+...|++++|...+++.....+       ..
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            6778888899999999999999988764212211 1121     233447789999999999998876522       13


Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHc----CCccCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          254 YSSMVHNLCKAKRLPSASKLLLSCLKS----GVRILK-SAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      +..+...+...|++++|...+++....    |..++. ..+..+..++...|+.++|...+++...
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            567778899999999999999987653    222233 3667778889999999999999988654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.57  E-value=1.2e-11  Score=105.59  Aligned_cols=303  Identities=13%  Similarity=0.009  Sum_probs=220.0

Q ss_pred             chHhHHHHHHHHhh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-------------HhcCChhHHHH
Q 020976            9 CTATFNIMLNGLCK---------NRYTDNALRMFRGLQKHGFVPELVTYNILIKGL-------------CKAGRLRTARW   66 (319)
Q Consensus         9 ~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~   66 (319)
                      +...|...+....+         .|+++.|..+|++..+....+....|.......             ...+++..|..
T Consensus       120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~  199 (530)
T 2ooe_A          120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARR  199 (530)
T ss_dssp             CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHH
Confidence            45667777776654         789999999999998731111123443322211             12355777777


Q ss_pred             HHHHH------hhCC---CCCC--------hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCCcccHHHH
Q 020976           67 ILKEL------GDSG---HAPN--------AITYTTIMKCCFRN----RKY----KLGLEILSAMKRKGYTFDGFGYCTV  121 (319)
Q Consensus        67 ~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l  121 (319)
                      ++..+      .+..   ++|+        ...|...+......    ++.    +.+..+|++..... +.++..|..+
T Consensus       200 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~  278 (530)
T 2ooe_A          200 VAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEA  278 (530)
T ss_dssp             HHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            77663      2221   2443        24666666543332    232    37788999988763 5577888888


Q ss_pred             HHHHHH-------cCchH-------HHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--H
Q 020976          122 IAAFVK-------IGRLK-------EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--K  185 (319)
Q Consensus       122 l~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~  185 (319)
                      ...+.+       .|+++       +|..+|++....-.+.+...|..++..+.+.|++++|..+|+++.+.  .|+  .
T Consensus       279 ~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~  356 (530)
T 2ooe_A          279 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPT  356 (530)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHH
T ss_pred             HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCch
Confidence            888775       68887       89999999987323456788999999999999999999999999985  443  2


Q ss_pred             HhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHhhccC---CchhHHHHHHHH
Q 020976          186 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR-LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL  261 (319)
Q Consensus       186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~  261 (319)
                      ..|..++..+.+.|+.++|..+|++..+.. +.+...+...... +...|++++|..+|++....   ++..|..++..+
T Consensus       357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~  435 (530)
T 2ooe_A          357 LVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  435 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            578888888889999999999999998753 2233333332222 34689999999999987643   678899999999


Q ss_pred             HccCChhHHHHHHHHHHHcCC-cc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          262 CKAKRLPSASKLLLSCLKSGV-RI--LKSAQKAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       262 ~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      ...|+.++|..+|++.+..+. .|  ....|...+......|+.+.+..+++++.+.
T Consensus       436 ~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          436 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             TTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999998642 23  2457888888888999999999999988654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.56  E-value=8.8e-13  Score=95.99  Aligned_cols=162  Identities=14%  Similarity=0.061  Sum_probs=74.9

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF   91 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (319)
                      .|..+...+...|++++|++.|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            344445555555555555555555444321 244445555555555555555555555554432 123444444444455


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL  171 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  171 (319)
                      ..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|..
T Consensus        88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            5555555555555444432 2333344444444444444444444444444331 2233344444444444444444444


Q ss_pred             HHHHHH
Q 020976          172 LLDEME  177 (319)
Q Consensus       172 ~~~~~~  177 (319)
                      .+++..
T Consensus       166 ~~~~~~  171 (186)
T 3as5_A          166 HFKKAN  171 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.55  E-value=2.2e-12  Score=97.49  Aligned_cols=207  Identities=11%  Similarity=-0.052  Sum_probs=157.0

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      .|+..|......+...|++++|++.|+...+...+++...+..+..++...|++++|.+.|++....... +...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            4568888999999999999999999999998765468888888999999999999999999999986433 677899999


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCcc--ChhhHHHHHH
Q 020976           88 KCCFRNRKYKLGLEILSAMKRKGYTFDG-------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL--DIVSYNTLIN  158 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~  158 (319)
                      .++...|++++|++.+++..+.. +.+.       ..|..+...+...|++++|+..|++..+.. +.  +...+..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence            99999999999999999998874 3344       457778888899999999999999998862 22  3566777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 020976          159 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI  226 (319)
Q Consensus       159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  226 (319)
                      ++...|     ...++++...+.. +...|.....  ...+.+++|...+++..+.. +.+..+...+
T Consensus       162 ~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l  220 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ  220 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence            776554     3344555444322 3344443332  34566899999999998864 3333444433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.55  E-value=5.5e-13  Score=116.56  Aligned_cols=166  Identities=12%  Similarity=-0.016  Sum_probs=144.3

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      ++.+|+.+...+.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|.+.|++..+.... +..+|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            5778999999999999999999999999886443 6888999999999999999999999999886433 6788999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA  168 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  168 (319)
                      ++...|++++|++.|++..+.. +-+...|..+..++...|++++|+..|++..+.. +-+...+..+..++...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence            9999999999999999998875 5567889999999999999999999999998863 3467788999999999999999


Q ss_pred             HHHHHHHHHH
Q 020976          169 AYLLLDEMEK  178 (319)
Q Consensus       169 a~~~~~~~~~  178 (319)
                      |.+.+++..+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988887754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.54  E-value=1.8e-12  Score=94.32  Aligned_cols=166  Identities=13%  Similarity=0.057  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA  124 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  124 (319)
                      ...+..+...+...|++++|.+.++++..... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            45667777888888999999988888876532 367778888888888888888888888887764 4566777778888


Q ss_pred             HHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHH
Q 020976          125 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA  204 (319)
Q Consensus       125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  204 (319)
                      +...|++++|...++++.... +.+...+..+..++...|++++|.+.+++..+.... +...+..+...+...|++++|
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888887752 346677777888888888888888888888776433 566777788888888888888


Q ss_pred             HHHHHHHHhc
Q 020976          205 RLHLEYMNKI  214 (319)
Q Consensus       205 ~~~~~~~~~~  214 (319)
                      ...++...+.
T Consensus       164 ~~~~~~~~~~  173 (186)
T 3as5_A          164 LPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            8888877664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.51  E-value=1.7e-12  Score=113.44  Aligned_cols=166  Identities=10%  Similarity=-0.027  Sum_probs=148.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      +..+|+.+...+.+.|++++|.+.|++..+.... +..+|..+..++.+.|++++|++.|++..+.. +-+...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4678999999999999999999999999986433 68899999999999999999999999999875 556788999999


Q ss_pred             HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG  203 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  203 (319)
                      ++...|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+.... +...+..+..++...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence            9999999999999999998863 346788999999999999999999999999987544 67789999999999999999


Q ss_pred             HHHHHHHHHh
Q 020976          204 ARLHLEYMNK  213 (319)
Q Consensus       204 a~~~~~~~~~  213 (319)
                      |.+.++++.+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.49  E-value=1.1e-11  Score=93.62  Aligned_cols=195  Identities=13%  Similarity=0.022  Sum_probs=151.7

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976           43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI  122 (319)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  122 (319)
                      .|+..+......+...|++++|.+.|++..+...+++...+..+..++...|++++|++.+++..+.. +.+...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            46688888999999999999999999999987654688888889999999999999999999999875 55677888999


Q ss_pred             HHHHHcCchHHHHHHHHHHHhCCCccCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HHhHHHHH
Q 020976          123 AAFVKIGRLKEATDYMEQMVTDGVQLDI-------VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD---KYTHTILI  192 (319)
Q Consensus       123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~  192 (319)
                      .++...|++++|+..+++..... +.+.       ..|..+...+...|++++|.+.|++..+.  .|+   ...+..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            99999999999999999998852 2334       45788888899999999999999999875  454   45666666


Q ss_pred             HHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976          193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK  249 (319)
Q Consensus       193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  249 (319)
                      .++...     +...++.+...+ ..+...+....  ....+.+++|...+++....
T Consensus       161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence            666543     344455555543 23334443333  34456789999999987654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.47  E-value=1.3e-11  Score=100.70  Aligned_cols=229  Identities=12%  Similarity=-0.003  Sum_probs=175.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CC-CCcccH
Q 020976           50 ILIKGLCKAGRLRTARWILKELGDSGH-APN----AITYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YT-FDGFGY  118 (319)
Q Consensus        50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~  118 (319)
                      .....+...|++++|...|++...... .++    ..++..+..++...|+++.|...+++..+..     .. ....++
T Consensus       106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            345566789999999999999876311 122    4578888899999999999999998877531     01 124567


Q ss_pred             HHHHHHHHHcCchHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcHHhH
Q 020976          119 CTVIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-----QGFECDKYTH  188 (319)
Q Consensus       119 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  188 (319)
                      ..+..+|...|++++|...+++....    +.+ ....++..+..+|...|++++|...+++..+     .... ...++
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~  264 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL  264 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence            78888999999999999999987763    111 1235678899999999999999999999876     4333 36778


Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHhcCC----CCChhhHHHHHHHHHhcCC---HHHHHHHHHhhccC--CchhHHHHHH
Q 020976          189 TILIDGLCKAGNIKGARLHLEYMNKIGF----DSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK--DSFTYSSMVH  259 (319)
Q Consensus       189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~l~~  259 (319)
                      ..+...+...|++++|...+++..+...    +.....+..+...+...++   +.+|...+++....  ....+..+..
T Consensus       265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~  344 (378)
T 3q15_A          265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA  344 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            8899999999999999999999887521    2223445666667777888   88888888875432  3456778899


Q ss_pred             HHHccCChhHHHHHHHHHHH
Q 020976          260 NLCKAKRLPSASKLLLSCLK  279 (319)
Q Consensus       260 ~~~~~~~~~~a~~~~~~~~~  279 (319)
                      .|...|++++|...|++..+
T Consensus       345 ~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          345 VFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999998865

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.47  E-value=1.3e-12  Score=101.84  Aligned_cols=159  Identities=14%  Similarity=0.051  Sum_probs=111.5

Q ss_pred             HhhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC------CC-CCChhhHHH
Q 020976           20 LCKNRYTDNALRMFRGLQKH-------GFVPELVTYNILIKGLCKAGRLRTARWILKELGDS------GH-APNAITYTT   85 (319)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~   85 (319)
                      ....|++++|+..|++..+.       ..+....++..+...+...|++++|...+++....      +. +....++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34567788888777776542       22234667888899999999999999999888753      21 223567788


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhC------C-CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC------C-CccChh
Q 020976           86 IMKCCFRNRKYKLGLEILSAMKRK------G-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD------G-VQLDIV  151 (319)
Q Consensus        86 l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~  151 (319)
                      +..++...|++++|.+.+++..+.      . .+....++..+...+...|++++|...+++....      + .+....
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            888888899999998888887654      1 1233556677777788888888888888777653      1 122345


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          152 SYNTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      ++..+..++...|++++|...+++..+
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            667777777788888888888777664

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.47  E-value=2.5e-12  Score=100.21  Aligned_cols=158  Identities=15%  Similarity=0.025  Sum_probs=104.0

Q ss_pred             HhcCChhHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------C-CCCCcccHHHH
Q 020976           56 CKAGRLRTARWILKELGD-------SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK------G-YTFDGFGYCTV  121 (319)
Q Consensus        56 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l  121 (319)
                      ...|++++|...+++..+       ...+....++..+...+...|++++|...+++..+.      + .+....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            345677777777666654       122224567778888888888888888888877653      1 12234567777


Q ss_pred             HHHHHHcCchHHHHHHHHHHHhC------C-CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-cHHh
Q 020976          122 IAAFVKIGRLKEATDYMEQMVTD------G-VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------GFEC-DKYT  187 (319)
Q Consensus       122 l~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~  187 (319)
                      ...+...|++++|...+++....      . .+....++..+...+...|++++|...+++..+.      +-.| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            77888888888888888777653      1 1223556677777777788888888877777653      1112 2345


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHh
Q 020976          188 HTILIDGLCKAGNIKGARLHLEYMNK  213 (319)
Q Consensus       188 ~~~l~~~~~~~~~~~~a~~~~~~~~~  213 (319)
                      +..+...+...|++++|...+++..+
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66666777777777777777766654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.45  E-value=7.5e-11  Score=91.32  Aligned_cols=239  Identities=9%  Similarity=0.019  Sum_probs=150.8

Q ss_pred             HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976           18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK   97 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   97 (319)
                      .-..-.|++..++.-   ..+...........-+.+++...|+++..         ....|....+..+...+ ..+   
T Consensus        21 kn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---   84 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---   84 (310)
T ss_dssp             HHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred             HHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence            445557888777773   33222222233334455777777777642         12234433444443332 222   


Q ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976           98 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEM  176 (319)
Q Consensus        98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  176 (319)
                       ++..++++...+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus        85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             667777776655 45555566777788888888888888888766543 235667777888888888888888888888


Q ss_pred             HHcCCCC-----cHHhHHHHHHHHh--c--cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          177 EKQGFEC-----DKYTHTILIDGLC--K--AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       177 ~~~~~~~-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      .+.  .|     +..+...++.++.  .  .++..+|..+|+++.+.  .|+..+...++.++.+.|++++|.+.++.+.
T Consensus       163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            765  44     3455555655532  2  33788888888887654  3443333444447888888888888887644


Q ss_pred             c------------C-CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          248 V------------K-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       248 ~------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      .            + ++.++..+|......|+  +|.+++.++.+.
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            3            2 56666555555555665  778888888775

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.45  E-value=2.8e-11  Score=94.98  Aligned_cols=190  Identities=12%  Similarity=-0.006  Sum_probs=105.1

Q ss_pred             HHHhcCChhHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHHcCchHHHHHHHHHHHhC----CCcc-ChhhHHHHHH
Q 020976           89 CCFRNRKYKLGLEILSAMKRK----GYTFD-GFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL-DIVSYNTLIN  158 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~  158 (319)
                      .|...|++++|.+.|.+..+.    |-+++ ..+|+.+..+|.+.|++++|+..+++....    |-.. ...+++.+..
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345566666666666655432    21111 345666666666666666666666665542    1100 1235666667


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHcCCCC-c----HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh------hhHHHH
Q 020976          159 LYCKE-GKLEAAYLLLDEMEKQGFEC-D----KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL------EAYNCI  226 (319)
Q Consensus       159 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l  226 (319)
                      +|... |++++|+..|++..+..... +    ..++..+...+...|++++|...+++..+.......      ..+..+
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  205 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            77774 77777777777665431110 1    235666677777777777777777777665322111      134556


Q ss_pred             HHHHHhcCCHHHHHHHHHhhccCCch--------hHHHHHHHHH--ccCChhHHHHHHHHHH
Q 020976          227 VDRLGKDGKIDHAINVFESMEVKDSF--------TYSSMVHNLC--KAKRLPSASKLLLSCL  278 (319)
Q Consensus       227 ~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~--~~~~~~~a~~~~~~~~  278 (319)
                      ..++...|++++|...|++....++.        .+..++..+.  ..+++++|+..|+++.
T Consensus       206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            66677777777777777776644221        2233444443  3455666666665543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.44  E-value=6.7e-11  Score=92.84  Aligned_cols=212  Identities=12%  Similarity=0.009  Sum_probs=151.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCC-hhhHHHHHHHHHhcCChhHH
Q 020976           25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS----GHAPN-AITYTTIMKCCFRNRKYKLG   99 (319)
Q Consensus        25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a   99 (319)
                      ++++|.+.|++.               ...|...|++++|.+.|++....    |.+++ ..+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            366666666655               45677889999999999887652    22222 56788899999999999999


Q ss_pred             HHHHHHHHhCCC---CC--CcccHHHHHHHHHHc-CchHHHHHHHHHHHhCCCcc-C----hhhHHHHHHHHHhcCCHHH
Q 020976          100 LEILSAMKRKGY---TF--DGFGYCTVIAAFVKI-GRLKEATDYMEQMVTDGVQL-D----IVSYNTLINLYCKEGKLEA  168 (319)
Q Consensus       100 ~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~  168 (319)
                      +..+++..+...   .+  -..++..+...|... |++++|+..|++........ +    ..++..+...+...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            999988875421   11  134677888888886 99999999999887641110 1    3467888899999999999


Q ss_pred             HHHHHHHHHHcCCCCcHH------hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh------hhHHHHHHHHH--hcC
Q 020976          169 AYLLLDEMEKQGFECDKY------THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL------EAYNCIVDRLG--KDG  234 (319)
Q Consensus       169 a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~  234 (319)
                      |...|++..+........      .+..+..++...|++++|...+++..+..  |+.      ..+..++.++.  ..+
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~  254 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSE  254 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHH
Confidence            999999998765433221      46777788888999999999999887642  321      12344555554  456


Q ss_pred             CHHHHHHHHHhhccCCchh
Q 020976          235 KIDHAINVFESMEVKDSFT  253 (319)
Q Consensus       235 ~~~~a~~~~~~~~~~~~~~  253 (319)
                      ++++|...|+.+...++..
T Consensus       255 ~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          255 QLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             THHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHhccCCccHHHH
Confidence            7889999998887766644

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.40  E-value=2.7e-10  Score=88.24  Aligned_cols=245  Identities=10%  Similarity=0.025  Sum_probs=170.3

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchH
Q 020976           53 KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK  132 (319)
Q Consensus        53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  132 (319)
                      +-..-.|++..++.-..++.   .........-+.+++...|+++..         ..-.|....+..+. .|...+   
T Consensus        21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~---   84 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK---   84 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT---
T ss_pred             HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc---
Confidence            34456789988887433322   122233444456888888887642         11123322333333 333322   


Q ss_pred             HHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHHhHHHHHHHHhccCChhHHHHHHHHH
Q 020976          133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHTILIDGLCKAGNIKGARLHLEYM  211 (319)
Q Consensus       133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  211 (319)
                       ++..|++....+ +++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.|
T Consensus        85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             778888877664 45566667888999999999999999999877654 226677888899999999999999999999


Q ss_pred             HhcCCCC-----ChhhHHHHHHHHH--hcC--CHHHHHHHHHhhccCCch--hHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          212 NKIGFDS-----NLEAYNCIVDRLG--KDG--KIDHAINVFESMEVKDSF--TYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       212 ~~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      .+.  .|     +..+...+..++.  ..|  ++.+|..+|+++....+.  +-..++.++.+.|++++|.+.++.+.+.
T Consensus       163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            875  46     3566666766633  334  899999999998766443  4445555888999999999999876653


Q ss_pred             C---------CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhccC
Q 020976          281 G---------VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH  319 (319)
Q Consensus       281 ~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i~h  319 (319)
                      -         -+.++.++..+|......|+  +|.+++++++.....|
T Consensus       241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence            1         13366777677777777786  8899999999888776

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.38  E-value=8.9e-11  Score=90.56  Aligned_cols=186  Identities=9%  Similarity=-0.013  Sum_probs=111.6

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-C-ChhhH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKAGRLRTARWILKELGDSGHA-P-NAITY   83 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~   83 (319)
                      +...+-.+...+.+.|++++|+..|+.+.+.... +   ...+..+..++.+.|++++|...|+++.+..+. | ....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            4556666777778888888888888888775322 3   566777778888888888888888888774321 1 23456


Q ss_pred             HHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH
Q 020976           84 TTIMKCCFR--------NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT  155 (319)
Q Consensus        84 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  155 (319)
                      ..+..++..        .|++++|+..|+++.+.. +.+......+...              ..+...    ....+..
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~~~----~~~~~~~  153 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELRAK----LARKQYE  153 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence            666677777        788888888888877653 2222222111100              000000    0011344


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCC--cHHhHHHHHHHHhcc----------CChhHHHHHHHHHHhc
Q 020976          156 LINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKA----------GNIKGARLHLEYMNKI  214 (319)
Q Consensus       156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~  214 (319)
                      +..++...|++++|...|+++.+..+..  ....+..+..++...          |++++|...++.+.+.
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            5666666777777777777766543221  223455555555544          6667777777766664

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.36  E-value=7.6e-11  Score=87.63  Aligned_cols=164  Identities=10%  Similarity=-0.061  Sum_probs=81.5

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHhcCChhHHHHHHHHHhh
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI----------------LIKGLCKAGRLRTARWILKELGD   73 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~   73 (319)
                      +..+-.....+...|++++|+..|++..+..+. +...|..                +..++.+.|++++|...|++..+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344455556677888888888888888775321 3344444                55555555555555555555554


Q ss_pred             CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCc--hHHHHHHHHHHHhCCCccChh
Q 020976           74 SGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR--LKEATDYMEQMVTDGVQLDIV  151 (319)
Q Consensus        74 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~  151 (319)
                      ..+. +...+..+..++...|++++|+..|++..+.. |.+..++..+...|...|+  ...+...++....  ..|...
T Consensus        83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  158 (208)
T 3urz_A           83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY  158 (208)
T ss_dssp             HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred             HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence            3222 44555555555555555555555555555543 3344444444444433332  2223333333221  111122


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          152 SYNTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      .+.....++...|++++|...|++..+
T Consensus       159 a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          159 ARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            222233334444555555555555544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.35  E-value=9.9e-11  Score=80.17  Aligned_cols=129  Identities=13%  Similarity=0.145  Sum_probs=72.2

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF   91 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (319)
                      .|..+...+...|++++|..+|+++.+.+. .+...+..+...+...|++++|...++++...+. .+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence            455566666666666666666666655432 2455556666666666666666666666655422 24445555555556


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  143 (319)
                      ..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++..
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            6666666666665555442 23344444555555555555555555555443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.34  E-value=1.5e-10  Score=79.32  Aligned_cols=129  Identities=15%  Similarity=0.178  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV  126 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  126 (319)
                      .|..+...+...|++++|..+++++..... .+...+..+...+...|++++|.+.++++...+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            344555555566666666666666554322 244455555555555566666666665555443 333444445555555


Q ss_pred             HcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      ..|++++|...++++.... +.+...+..+...+...|++++|...++++..
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            5555555555555554431 22344444555555555555555555555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.33  E-value=1.3e-10  Score=89.68  Aligned_cols=187  Identities=9%  Similarity=-0.018  Sum_probs=127.1

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCccc
Q 020976           43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN---AITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFDGFG  117 (319)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~  117 (319)
                      .+...+..+...+.+.|++++|...|+++....+. +   ...+..+..++.+.|++++|+..|+++.+...  +.....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            35666777777888888888888888888875322 2   56677788888888888888888888887521  112344


Q ss_pred             HHHHHHHHHH--------cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH
Q 020976          118 YCTVIAAFVK--------IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT  189 (319)
Q Consensus       118 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  189 (319)
                      +..+..++..        .|++++|+..|+++.... +.+......+..              +..+...    -...+.
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~  152 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQY  152 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence            5566677777        788888888888877752 112222222111              1111100    011246


Q ss_pred             HHHHHHhccCChhHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhc----------CCHHHHHHHHHhhccC
Q 020976          190 ILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYNCIVDRLGKD----------GKIDHAINVFESMEVK  249 (319)
Q Consensus       190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~  249 (319)
                      .+...+...|++++|...|+.+.+....  .....+..+..+|...          |++++|...|+++...
T Consensus       153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            6788899999999999999999886311  1345777888888766          8999999999988754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.33  E-value=2.9e-09  Score=83.16  Aligned_cols=221  Identities=8%  Similarity=-0.012  Sum_probs=135.4

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHhhCCCCCChhhHHHHHHHH----Hhc--
Q 020976           22 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG--RLRTARWILKELGDSGHAPNAITYTTIMKCC----FRN--   93 (319)
Q Consensus        22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--   93 (319)
                      +....++|+++++.++..++. +..+|+.--..+...+  ++++++++++.+....++ +..+|+.--..+    ...  
T Consensus        45 ~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~  122 (306)
T 3dra_A           45 AEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN  122 (306)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred             cCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence            334446788888888776443 5666777777777777  788888888888775443 555666554444    444  


Q ss_pred             -CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchH--HHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC-----
Q 020976           94 -RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK--EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK-----  165 (319)
Q Consensus        94 -~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----  165 (319)
                       +++++++++++++.+.. +-+..+|+.-...+.+.|.++  ++++.++++.+.. +-+...|+.-...+...+.     
T Consensus       123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~  200 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN  200 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence             56777777777777664 556666766666666777766  7777777777653 2356666666655655555     


Q ss_pred             -HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh-HHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHH
Q 020976          166 -LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK-GARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAIN  241 (319)
Q Consensus       166 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~  241 (319)
                       ++++++.++++....+. |...|+.....+.+.|+.. .+..+...+.+.+  -+.+...+..++.+|.+.|+.++|.+
T Consensus       201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~  279 (306)
T 3dra_A          201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT  279 (306)
T ss_dssp             HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence             66677777666665444 5556665555555555432 2334444443321  12334455555555555555555555


Q ss_pred             HHHhhc
Q 020976          242 VFESME  247 (319)
Q Consensus       242 ~~~~~~  247 (319)
                      +++.+.
T Consensus       280 ~~~~l~  285 (306)
T 3dra_A          280 VYDLLK  285 (306)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.32  E-value=5.5e-11  Score=104.26  Aligned_cols=173  Identities=12%  Similarity=-0.031  Sum_probs=100.0

Q ss_pred             hhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976           21 CKNRYTDNALRMFRGLQ--------KHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR   92 (319)
Q Consensus        21 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (319)
                      ...|++++|++.+++..        +.. +.+...+..+...+...|++++|.+.|+++.+.... +...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            55666666666666665        321 224555666666666666666666666666654322 45566666666666


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 020976           93 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL  172 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  172 (319)
                      .|++++|++.|++..+.. +-+...+..+..++.+.|++++ +..|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666666666553 3345556666666666666666 66666666542 23455566666666666666666666


Q ss_pred             HHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976          173 LDEMEKQGFECDKYTHTILIDGLCKAG  199 (319)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~  199 (319)
                      |++..+.... +...+..+..++...+
T Consensus       557 ~~~al~l~P~-~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          557 LDEVPPTSRH-FTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred             HHhhcccCcc-cHHHHHHHHHHHHccC
Confidence            6665544221 2344455555554433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.31  E-value=2.3e-08  Score=86.75  Aligned_cols=116  Identities=4%  Similarity=-0.055  Sum_probs=82.1

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhCC-CCCChhhH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR---LRTARWILKELGDSG-HAPNAITY   83 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~   83 (319)
                      -|..+|..++..+.+.+.++.+..+|+++... .+.+...|...+..-.+.++   ++.+..+|++..... .+|++..|
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW  142 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW  142 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            47788999999999999999999999999886 45577888888888888888   999999999988753 13788888


Q ss_pred             HHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CCC-cccHHHHHHH
Q 020976           84 TTIMKCCFRNRKY--------KLGLEILSAMKR-KGY-TFD-GFGYCTVIAA  124 (319)
Q Consensus        84 ~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~ll~~  124 (319)
                      ...+....+.++.        +.+.++|+.... .|. .++ ...|...+..
T Consensus       143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f  194 (679)
T 4e6h_A          143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF  194 (679)
T ss_dssp             HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            8887766655543        233466665543 344 333 3455555543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.31  E-value=1.3e-10  Score=101.89  Aligned_cols=186  Identities=10%  Similarity=-0.076  Sum_probs=123.3

Q ss_pred             HhcCChhHHHHHHHHHh--------hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 020976           56 CKAGRLRTARWILKELG--------DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK  127 (319)
Q Consensus        56 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  127 (319)
                      ...|++++|.+.+++..        +.. +.+...+..+..++...|++++|++.+++..+.. +.+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            56677777777777776        322 2345667777777777778888877777777653 4456667777777777


Q ss_pred             cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHH
Q 020976          128 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH  207 (319)
Q Consensus       128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  207 (319)
                      .|++++|+..|++..+.. +.+...+..+..++.+.|++++ .+.|++..+.... +...+..+..++...|++++|...
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            788888888777777652 3355667777777777777777 7777777766443 556677777777777788887777


Q ss_pred             HHHHHhcCCCCChhhHHHHHHHHHhcCC--------HHHHHHHHHhhc
Q 020976          208 LEYMNKIGFDSNLEAYNCIVDRLGKDGK--------IDHAINVFESME  247 (319)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~  247 (319)
                      |++..+.+ +.+...+..+..++...++        +++|.+.+..+.
T Consensus       557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          557 LDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            77776643 2234556666666654333        555566555554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.30  E-value=1.2e-09  Score=82.15  Aligned_cols=187  Identities=8%  Similarity=-0.021  Sum_probs=123.4

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh---hhH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-P-ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA---ITY   83 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~   83 (319)
                      +...+..+...+.+.|++++|+..|+++.+..+. | ....+..+..++.+.|++++|...|+++.+..+. +.   ..+
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence            4456667778899999999999999999875332 1 1357788889999999999999999999875332 22   244


Q ss_pred             HHHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCC
Q 020976           84 TTIMKCCFR------------------NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG  145 (319)
Q Consensus        84 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  145 (319)
                      ..+..++..                  .|++++|...|+++.+.. |-+...+.......          .+...+.   
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~---  147 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA---  147 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH---
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH---
Confidence            444444443                  456677777777766552 22222222111100          0000000   


Q ss_pred             CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976          146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIG  215 (319)
Q Consensus       146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  215 (319)
                           .....+...+.+.|++++|...|+++.+..+...  ...+..+..++.+.|++++|...++.+...+
T Consensus       148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                 0123456778889999999999999887643311  2467788888999999999999999887764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.30  E-value=1.1e-08  Score=88.72  Aligned_cols=201  Identities=9%  Similarity=-0.039  Sum_probs=130.2

Q ss_pred             cccHHHHHHHHHHcCchHHHH-HHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCc
Q 020976          115 GFGYCTVIAAFVKIGRLKEAT-DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF---------ECD  184 (319)
Q Consensus       115 ~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~  184 (319)
                      +..|...+..+...|+.++|. .+|++.... .|.+...|-..+....+.|+++.|.++|+.+.....         .|+
T Consensus       343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~  421 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT  421 (679)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence            333444444455567777775 788777764 344555666677777778888888888887765310         121


Q ss_pred             ------------HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHhhccC--
Q 020976          185 ------------KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD-GKIDHAINVFESMEVK--  249 (319)
Q Consensus       185 ------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~--  249 (319)
                                  ...|...+....+.|+.+.|..+|....+.........|...+..-.+. ++.+.|..+|+...+.  
T Consensus       422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p  501 (679)
T 4e6h_A          422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA  501 (679)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred             chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence                        2356666666677778888888888877651122233444333333333 3478888888876643  


Q ss_pred             -CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCcc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          250 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI--LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       250 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                       ++..|...+......|+.+.|..+|++.+.....+  ....|...+.--.+.|+.+.+.++.+++.+..
T Consensus       502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred             CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence             55666677777777788888888888887653321  34567777777777888888888888877654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.30  E-value=7.3e-10  Score=83.39  Aligned_cols=189  Identities=10%  Similarity=-0.021  Sum_probs=123.3

Q ss_pred             cccHHHHHHHHHHcCchHHHHHHHHHHHhCCCc-c-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH--HhHHH
Q 020976          115 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YTHTI  190 (319)
Q Consensus       115 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~  190 (319)
                      ...+..+...+.+.|++++|+..|+++...... | ....+..+..++.+.|++++|...|+++.+..+....  ..+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            344556677788899999999999998875221 1 1346777888999999999999999999876443221  23444


Q ss_pred             HHHHHhc------------------cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCch
Q 020976          191 LIDGLCK------------------AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF  252 (319)
Q Consensus       191 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  252 (319)
                      +..++..                  .|++++|...|+.+.+.. |-+............    .      ...    ...
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~----~------~~~----~~~  148 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVF----L------KDR----LAK  148 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHH----H------HHH----HHH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHH----H------HHH----HHH
Confidence            4444443                  356666666666666542 112222211111000    0      000    001


Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHcCCcc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 020976          253 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI--LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS  318 (319)
Q Consensus       253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i~  318 (319)
                      ....+...|...|++++|+..|+++++.....  ....+..+..++.+.|++++|.+.++++...+..
T Consensus       149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            11345677889999999999999998863221  1256888899999999999999999998877654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.28  E-value=2.8e-10  Score=84.55  Aligned_cols=165  Identities=12%  Similarity=-0.020  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH----------------HHHHHHhcCChhHHHHHHHHHHh
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT----------------IMKCCFRNRKYKLGLEILSAMKR  108 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~  108 (319)
                      ...+......+...|++++|...|++.....+. +...|..                +..++.+.|++++|+..|++..+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344445556677888999999998888775221 3444544                55566666666666666666665


Q ss_pred             CCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCcHH
Q 020976          109 KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK--LEAAYLLLDEMEKQGFECDKY  186 (319)
Q Consensus       109 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~  186 (319)
                      .. +-+...+..+..++...|++++|...|++..+.. |.+..++..+..++...|+  .+.+...+.....  ..|...
T Consensus        83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  158 (208)
T 3urz_A           83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY  158 (208)
T ss_dssp             HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred             HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence            53 3445556666666666666666666666665542 2244555555555544332  2233333333321  122222


Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHhc
Q 020976          187 THTILIDGLCKAGNIKGARLHLEYMNKI  214 (319)
Q Consensus       187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~  214 (319)
                      .+.....++...|++++|...|++..+.
T Consensus       159 a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          159 ARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            2333334444455666666666665553

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.27  E-value=1.3e-10  Score=83.87  Aligned_cols=162  Identities=12%  Similarity=0.026  Sum_probs=92.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-H
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC-C   90 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~   90 (319)
                      .+......+.+.|++++|+..|++..+..+ .+...+..+...+...|++++|...+++.....  |+...+..+... +
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL   84 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence            344556667777777777777777655422 256667777777777777777777777765542  233322222111 1


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhcCCHHHH
Q 020976           91 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAA  169 (319)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a  169 (319)
                      ...+....+...+++..+.. +.+...+..+...+...|++++|...|+++......+ +...+..+..++...|+.++|
T Consensus        85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            12222334556666665543 3345556666666666666666666666666543221 234556666666666666666


Q ss_pred             HHHHHHHH
Q 020976          170 YLLLDEME  177 (319)
Q Consensus       170 ~~~~~~~~  177 (319)
                      ...|++..
T Consensus       164 ~~~y~~al  171 (176)
T 2r5s_A          164 ASKYRRQL  171 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.25  E-value=4.3e-08  Score=76.62  Aligned_cols=218  Identities=8%  Similarity=-0.087  Sum_probs=159.3

Q ss_pred             hcCC-hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCcccHHHHHHHH----HHc-
Q 020976           57 KAGR-LRTARWILKELGDSGHAPNAITYTTIMKCCFRNR--KYKLGLEILSAMKRKGYTFDGFGYCTVIAAF----VKI-  128 (319)
Q Consensus        57 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~-  128 (319)
                      +.|. .++|+++++.+...++. +..+|+.--.++...+  +++++++.++.+.... +-+..+|+.-...+    ... 
T Consensus        44 ~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~  121 (306)
T 3dra_A           44 KAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN  121 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence            4444 46899999999886433 5667888878888888  8999999999998875 55666777655555    555 


Q ss_pred             --CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC----
Q 020976          129 --GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE--AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN----  200 (319)
Q Consensus       129 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----  200 (319)
                        +++++++.+++.+.+.. +-+..+|+.-..++.+.|.++  ++++.++++.+..+. +...|+.-...+...+.    
T Consensus       122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~  199 (306)
T 3dra_A          122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD  199 (306)
T ss_dssp             TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred             ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence              78889999999988863 447778888877888888888  899999999887655 66677666666666665    


Q ss_pred             --hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHhhcc------CCchhHHHHHHHHHccCChhHHH
Q 020976          201 --IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH-AINVFESMEV------KDSFTYSSMVHNLCKAKRLPSAS  271 (319)
Q Consensus       201 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~  271 (319)
                        ++++.+.++.+.... +-|...|+.+...+.+.|+... +..+..++..      .++..+..++..|.+.|+.++|.
T Consensus       200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~  278 (306)
T 3dra_A          200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR  278 (306)
T ss_dssp             HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence              777888888777765 5566777777777777776333 4455555443      25566777777777778888888


Q ss_pred             HHHHHHHH
Q 020976          272 KLLLSCLK  279 (319)
Q Consensus       272 ~~~~~~~~  279 (319)
                      ++++.+.+
T Consensus       279 ~~~~~l~~  286 (306)
T 3dra_A          279 TVYDLLKS  286 (306)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88888765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.24  E-value=7e-11  Score=82.89  Aligned_cols=143  Identities=8%  Similarity=-0.083  Sum_probs=81.8

Q ss_pred             HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976           18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK   97 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   97 (319)
                      ..+...|++++|++.++....... .+...+..+...|.+.|++++|.+.|++..+..+. +..+|..+..++...|+++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence            344555666677666666554311 13344555666666777777777777776664322 5666666666677777777


Q ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHH-HHHHHhCCCccChhhHHHHHHHHHhcC
Q 020976           98 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY-MEQMVTDGVQLDIVSYNTLINLYCKEG  164 (319)
Q Consensus        98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (319)
                      +|+..|++..+.. +-+...+..+...+.+.|+++++... +++..+.. |-+..+|......+...|
T Consensus        83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            7777776666653 33455666666666666666554433 45555531 224445555555554444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.24  E-value=4.3e-10  Score=96.77  Aligned_cols=156  Identities=10%  Similarity=-0.013  Sum_probs=118.6

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 020976           23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI  102 (319)
Q Consensus        23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  102 (319)
                      .|++++|++.|++..+... .+...+..+...+...|++++|.+.|++..+... .+...+..+..++...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4788999999999887633 3678899999999999999999999999988643 3678899999999999999999999


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 020976          103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE---GKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~  179 (319)
                      +++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..++...   |+.++|.+.+++..+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99998875 5567788899999999999999999999998863 34677888899999999   9999999999999887


Q ss_pred             CCC
Q 020976          180 GFE  182 (319)
Q Consensus       180 ~~~  182 (319)
                      +..
T Consensus       158 ~p~  160 (568)
T 2vsy_A          158 GVG  160 (568)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.24  E-value=1.9e-09  Score=80.24  Aligned_cols=178  Identities=12%  Similarity=0.091  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----ChhHHHHH
Q 020976           27 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR----KYKLGLEI  102 (319)
Q Consensus        27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~  102 (319)
                      .+|++.|++..+.|   ++..+..+...|...+++++|.++|++..+.|   ++..+..+...|.. +    ++++|.++
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            35677777777753   67788888888888899999999999888764   56777777777776 6    78889888


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCCCc-cChhhHHHHHHHHHh----cCCHHHHHHHH
Q 020976          103 LSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQ-LDIVSYNTLINLYCK----EGKLEAAYLLL  173 (319)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~  173 (319)
                      |++..+.|   ++..+..|...|..    .+++++|+.+|++..+.|.. .....+..+...|..    .+++++|..+|
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            88887765   45667777777766    77888888888888876521 125677778888877    77888888888


Q ss_pred             HHHHHcCCCCcHHhHHHHHHHHhcc-C-----ChhHHHHHHHHHHhcCC
Q 020976          174 DEMEKQGFECDKYTHTILIDGLCKA-G-----NIKGARLHLEYMNKIGF  216 (319)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~  216 (319)
                      ++..+.  ..+...+..+...|... |     +.++|...++...+.|.
T Consensus       153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            888776  22344566666666532 2     78888888888887763

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.24  E-value=5.4e-10  Score=87.39  Aligned_cols=168  Identities=13%  Similarity=-0.018  Sum_probs=129.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH
Q 020976           42 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV  121 (319)
Q Consensus        42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  121 (319)
                      +.+...+..+...+...|++++|...|++.....+. +...+..+...+.+.|++++|...++++...  .|+.......
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence            345667778888888999999999999998876433 6778888889999999999999999888765  3444332222


Q ss_pred             -HHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccC
Q 020976          122 -IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAG  199 (319)
Q Consensus       122 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  199 (319)
                       ...+...++.+.|...+++..... +.+...+..+...+...|++++|...|.++.+..+.. +...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence             223566778888888888888763 4567788889999999999999999999998875432 2567888889999999


Q ss_pred             ChhHHHHHHHHHHh
Q 020976          200 NIKGARLHLEYMNK  213 (319)
Q Consensus       200 ~~~~a~~~~~~~~~  213 (319)
                      +.+++...+++...
T Consensus       270 ~~~~a~~~~r~al~  283 (287)
T 3qou_A          270 TGDALASXYRRQLY  283 (287)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHH
Confidence            99988888876543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.23  E-value=7.1e-09  Score=77.17  Aligned_cols=138  Identities=15%  Similarity=0.105  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC----CHHHHHHHHH
Q 020976           99 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG----KLEAAYLLLD  174 (319)
Q Consensus        99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~  174 (319)
                      |.+.|++..+.|   ++..+..+...|...+++++|+.+|++..+.|   +...+..+...|.. +    ++++|.++|+
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            444455544443   34444455555555555555555555555443   33344444444444 3    4555555555


Q ss_pred             HHHHcCCCCcHHhHHHHHHHHhc----cCChhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHh
Q 020976          175 EMEKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFD-SNLEAYNCIVDRLGK----DGKIDHAINVFES  245 (319)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~  245 (319)
                      +..+.|   +...+..+...|..    .+++++|..+|++..+.+.. .+...+..|...|..    .+++++|...|++
T Consensus        78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            554432   33344444444443    44555555555554443310 013344444444444    3444444444444


Q ss_pred             h
Q 020976          246 M  246 (319)
Q Consensus       246 ~  246 (319)
                      .
T Consensus       155 A  155 (212)
T 3rjv_A          155 S  155 (212)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.21  E-value=7.6e-10  Score=95.26  Aligned_cols=154  Identities=10%  Similarity=-0.071  Sum_probs=119.2

Q ss_pred             cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHH
Q 020976           58 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY  137 (319)
Q Consensus        58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  137 (319)
                      .|++++|.+.|++..+... -+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4788999999999887533 267889999999999999999999999999875 55678889999999999999999999


Q ss_pred             HHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc---CChhHHHHHHHHHHhc
Q 020976          138 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA---GNIKGARLHLEYMNKI  214 (319)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~  214 (319)
                      +++..+.. +.+...+..+..++...|++++|.+.+++..+.... +...+..+...+...   |+.++|...+++..+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99998863 346778999999999999999999999999987543 667888899999999   9999999999999887


Q ss_pred             C
Q 020976          215 G  215 (319)
Q Consensus       215 ~  215 (319)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.21  E-value=1e-09  Score=85.84  Aligned_cols=166  Identities=11%  Similarity=0.019  Sum_probs=131.8

Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHH-
Q 020976           77 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT-  155 (319)
Q Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-  155 (319)
                      +.+...+..+...+...|++++|...|++..+.. +-+...+..+...+.+.|++++|...++++...  .|+...... 
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence            3456677788888899999999999999998875 556778888999999999999999999988775  344433322 


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcC
Q 020976          156 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-SNLEAYNCIVDRLGKDG  234 (319)
Q Consensus       156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~  234 (319)
                      ....+...++.++|...+++.....+. +...+..+...+...|++++|...+.++.+.... .+...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            333466778888899999998887544 6778888999999999999999999999987421 12567888999999999


Q ss_pred             CHHHHHHHHHhh
Q 020976          235 KIDHAINVFESM  246 (319)
Q Consensus       235 ~~~~a~~~~~~~  246 (319)
                      +.++|...+++.
T Consensus       270 ~~~~a~~~~r~a  281 (287)
T 3qou_A          270 TGDALASXYRRQ  281 (287)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHH
Confidence            999998888764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.20  E-value=1.9e-10  Score=80.66  Aligned_cols=81  Identities=15%  Similarity=0.055  Sum_probs=33.6

Q ss_pred             HHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccC
Q 020976          120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG  199 (319)
Q Consensus       120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  199 (319)
                      .+...|.+.|++++|+..|++..+.. +-+..+|..+..++...|++++|...|++..+..+. +...+..+...+.+.|
T Consensus        36 ~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~  113 (150)
T 4ga2_A           36 YFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKND  113 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence            34444444444444444444444331 123334444444444444444444444444443222 2333444444444444


Q ss_pred             Chh
Q 020976          200 NIK  202 (319)
Q Consensus       200 ~~~  202 (319)
                      +++
T Consensus       114 ~~~  116 (150)
T 4ga2_A          114 VTD  116 (150)
T ss_dssp             SSS
T ss_pred             ChH
Confidence            443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.19  E-value=3.9e-10  Score=81.38  Aligned_cols=162  Identities=15%  Similarity=0.112  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH-H
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA-F  125 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~  125 (319)
                      .+..+...+...|++++|...|++..+..+ .+...+..+..++...|++++|+..+++.....  |++..+..+... +
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL   84 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence            345566677788888888888888766432 256777888888888888888888888776553  343332222211 1


Q ss_pred             HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccCChhHH
Q 020976          126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGA  204 (319)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a  204 (319)
                      ...++...+...+++..... +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus        85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            12223344677777776642 3356677777777888888888888888777664432 245667777777777887777


Q ss_pred             HHHHHHHH
Q 020976          205 RLHLEYMN  212 (319)
Q Consensus       205 ~~~~~~~~  212 (319)
                      ...|++..
T Consensus       164 ~~~y~~al  171 (176)
T 2r5s_A          164 ASKYRRQL  171 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.16  E-value=6.7e-10  Score=87.80  Aligned_cols=198  Identities=10%  Similarity=-0.050  Sum_probs=112.6

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 020976           23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK-AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE  101 (319)
Q Consensus        23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  101 (319)
                      .|++++|.+++++..+..  +.     .    +.+ .++++.|...|.+.               ...|...|++++|..
T Consensus         4 ~~~~~eA~~~~~~a~k~~--~~-----~----~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL--KT-----S----FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CC-----C----SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc--cc-----c----ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            456666776666665431  11     1    112 45566666665554               345667777888777


Q ss_pred             HHHHHHhCCC---CC--CcccHHHHHHHHHHcCchHHHHHHHHHHHhC----CCcc-ChhhHHHHHHHHHhcCCHHHHHH
Q 020976          102 ILSAMKRKGY---TF--DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL-DIVSYNTLINLYCKEGKLEAAYL  171 (319)
Q Consensus       102 ~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~  171 (319)
                      .|.+..+...   .+  -..+|+.+..+|...|++++|+..|++....    |-+. ...++..+..+|.. |++++|+.
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            7776654310   00  1335666667777777777777777766542    1111 13456666666666 77777777


Q ss_pred             HHHHHHHcCCC---C--cHHhHHHHHHHHhccCChhHHHHHHHHHHhcC----CCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 020976          172 LLDEMEKQGFE---C--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIG----FDSN-LEAYNCIVDRLGKDGKIDHAIN  241 (319)
Q Consensus       172 ~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~  241 (319)
                      .|++..+....   +  ...++..+...+...|++++|...+++..+..    ..+. ...+..+..++...|++++|..
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            77766543111   0  13456666667777777777777777666531    1111 1244455555666677777777


Q ss_pred             HHHhhc
Q 020976          242 VFESME  247 (319)
Q Consensus       242 ~~~~~~  247 (319)
                      .|++..
T Consensus       217 ~~~~al  222 (307)
T 2ifu_A          217 CVRESY  222 (307)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            776655

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.14  E-value=5.6e-08  Score=76.84  Aligned_cols=183  Identities=8%  Similarity=-0.006  Sum_probs=133.1

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCCF   91 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (319)
                      ++.+-....+.+..++|+++++.+...+.. +..+|+.--..+...| .+++++++++.+....++ +..+|+.-..++.
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~  134 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD  134 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence            334444445556667899999999887554 6777888777777778 599999999999987554 7788888777777


Q ss_pred             hc-C-ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchH--------HHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 020976           92 RN-R-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK--------EATDYMEQMVTDGVQLDIVSYNTLINLYC  161 (319)
Q Consensus        92 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (319)
                      +. + ++++++++++++.+.. +.+..+|+.-...+.+.|.++        ++++.++++.+.. +-|...|+.....+.
T Consensus       135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~  212 (349)
T 3q7a_A          135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV  212 (349)
T ss_dssp             HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred             HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            76 6 7889999999998775 557777777666666666666        8888888888764 347777888777777


Q ss_pred             hcCC-------HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC
Q 020976          162 KEGK-------LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN  200 (319)
Q Consensus       162 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  200 (319)
                      +.++       ++++++.+++.....+. |...|+.+-..+.+.|.
T Consensus       213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          213 SRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             TSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             hccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence            7765       67888888887776544 66666655555555444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.13  E-value=5.2e-09  Score=82.70  Aligned_cols=185  Identities=8%  Similarity=-0.049  Sum_probs=126.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CcccHHHH
Q 020976           52 IKGLCKAGRLRTARWILKELGDS----GHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRK----GYTF-DGFGYCTV  121 (319)
Q Consensus        52 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l  121 (319)
                      ...|...|++++|...|.+....    +..+ -..+|+.+..+|...|++++|+..|++..+.    |-+. ...++..+
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  122 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA  122 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45677888999988888877652    1111 1457788888888889999999988877643    2111 13466777


Q ss_pred             HHHHHHcCchHHHHHHHHHHHhC----CCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCc-HHhHHHH
Q 020976          122 IAAFVKIGRLKEATDYMEQMVTD----GVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GFECD-KYTHTIL  191 (319)
Q Consensus       122 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l  191 (319)
                      ...|.. |++++|+..|++....    +..+ ...++..+...+...|++++|+..|++..+.    +..+. ...+..+
T Consensus       123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  201 (307)
T 2ifu_A          123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ  201 (307)
T ss_dssp             HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            778877 9999999999887763    1111 1456788899999999999999999988753    21111 2256666


Q ss_pred             HHHHhccCChhHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhcCCHHHHHH
Q 020976          192 IDGLCKAGNIKGARLHLEYMNKIGFDSNL------EAYNCIVDRLGKDGKIDHAIN  241 (319)
Q Consensus       192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~  241 (319)
                      ..++...|++++|...+++.. ..  |+.      .....++.++ ..|+.+.+.+
T Consensus       202 g~~~~~~g~~~~A~~~~~~al-~~--p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          202 VLVQLHRADYVAAQKCVRESY-SI--PGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHT-TS--TTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHh-CC--CCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            777778899999999999988 42  321      1234444444 5677666655

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.11  E-value=1.4e-08  Score=75.57  Aligned_cols=127  Identities=12%  Similarity=-0.005  Sum_probs=90.7

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF   91 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (319)
                      .+..+...+...|++++|+..|++..    .|+...+..+...+...|++++|.+.|++..... +.+...+..+..++.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            35556667777888888888887663    4577788888888888888888888888877653 235677777788888


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCc----------------ccHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDG----------------FGYCTVIAAFVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  144 (319)
                      ..|++++|++.+++..+.. +.+.                ..+..+..++.+.|++++|...|++....
T Consensus        83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            8888888888888877653 2222                45566666677777777777777776664

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.11  E-value=1.4e-08  Score=75.58  Aligned_cols=132  Identities=8%  Similarity=-0.042  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF  125 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  125 (319)
                      ..+..+...+...|++++|.+.|++..    .|+...+..+..++...|++++|++.+++..+.. +.+...+..+..++
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence            345567778889999999999998874    5688899999999999999999999999998775 55677888899999


Q ss_pred             HHcCchHHHHHHHHHHHhCCCc--------------c-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 020976          126 VKIGRLKEATDYMEQMVTDGVQ--------------L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE  182 (319)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  182 (319)
                      ...|++++|...|++.......              | ....+..+..++...|++++|...|++..+....
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            9999999999999999885211              1 1267888889999999999999999998876443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.09  E-value=5.5e-08  Score=76.25  Aligned_cols=160  Identities=13%  Similarity=0.061  Sum_probs=73.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCC-CCCCc----ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCc-cC----hhhHHHH
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRKG-YTFDG----FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LD----IVSYNTL  156 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l  156 (319)
                      +..+...|++++|.+++++..+.. ..|+.    ..+..+...+...+++++|+..+++....... ++    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            344455555555555555554421 01111    11223444444445555555555555542111 11    1235555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH----c-CCCCc-HHhHHHHHHHHhccCChhHHHHHHHHHHhc----CCCC-ChhhHHH
Q 020976          157 INLYCKEGKLEAAYLLLDEMEK----Q-GFECD-KYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDS-NLEAYNC  225 (319)
Q Consensus       157 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~  225 (319)
                      ..+|...|++++|...+++..+    . +..+. ..++..+...|...|++++|...+++..+.    +..+ -..++..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            5555555555555555555542    1 11111 124555555555566666665555554432    1111 1345555


Q ss_pred             HHHHHHhcC-CHHHHHHHHHhh
Q 020976          226 IVDRLGKDG-KIDHAINVFESM  246 (319)
Q Consensus       226 l~~~~~~~~-~~~~a~~~~~~~  246 (319)
                      +..+|.+.| ++++|.+.+++.
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHH
Confidence            555555555 345555555543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.06  E-value=2.5e-09  Score=83.30  Aligned_cols=195  Identities=9%  Similarity=-0.014  Sum_probs=116.5

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      .+...+..+...+.+.|++++|+..|+...+.... +...|..+..++.+.|++++|...+++..+... .+...+..+.
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg   79 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG   79 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence            35667778888888888888888888888775332 677888888888888888888888888877543 2567788888


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976           88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE  167 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  167 (319)
                      .++...|++++|...|++..+.. +-+...+...+....+..   .+.. +........+.+......+.. + ..|+.+
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~  152 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYLTR-L-IAAERE  152 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence            88888888888888888877542 112112222222222111   1111 112222223334433333322 2 256777


Q ss_pred             HHHHHHHHHHHcCCCCcHH-hHHHHHHHHhcc-CChhHHHHHHHHHHh
Q 020976          168 AAYLLLDEMEKQGFECDKY-THTILIDGLCKA-GNIKGARLHLEYMNK  213 (319)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-~~~~~a~~~~~~~~~  213 (319)
                      +|.+.++...+.  .|+.. ....+...+.+. +.++++..+|..+.+
T Consensus       153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            777777666554  33332 223333333333 456667777766654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.06  E-value=1.2e-07  Score=74.32  Aligned_cols=159  Identities=14%  Similarity=0.094  Sum_probs=105.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC-CCcH----HhHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----hhhHHH
Q 020976          156 LINLYCKEGKLEAAYLLLDEMEKQGF-ECDK----YTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-SN----LEAYNC  225 (319)
Q Consensus       156 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~  225 (319)
                      .+..+...|++++|..++++..+... .|+.    ..+..+...+...+++++|...++...+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35666777778888877777765322 2221    12334555566667788888888777764222 12    125777


Q ss_pred             HHHHHHhcCCHHHHHHHHHhhcc-------C---CchhHHHHHHHHHccCChhHHHHHHHHHHHc----CCccC-HHHHH
Q 020976          226 IVDRLGKDGKIDHAINVFESMEV-------K---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS----GVRIL-KSAQK  290 (319)
Q Consensus       226 l~~~~~~~~~~~~a~~~~~~~~~-------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~  290 (319)
                      +..+|...|++++|...++++..       .   ...++..+...|...|++++|...+++.++.    +..+. ...|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            77778888888888887777652       1   2346777888888888888888888877653    22222 56788


Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHh
Q 020976          291 AVVDGLRHSGC-RREAKKIQSKIRM  314 (319)
Q Consensus       291 ~l~~~~~~~g~-~~~a~~~~~~~~~  314 (319)
                      .+..++.+.|+ +++|.+.+++...
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            88888888884 5888888877543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.03  E-value=1.8e-08  Score=71.61  Aligned_cols=127  Identities=11%  Similarity=0.011  Sum_probs=63.7

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF   91 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (319)
                      .|..+...+...|++++|...|++..+... .+..++..+...+...|++++|...+++...... .+...+..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence            344555555556666666666666555422 2455555555555566666666666655554321 24445555555555


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccHHHH--HHHHHHcCchHHHHHHHHHH
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTV--IAAFVKIGRLKEATDYMEQM  141 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~  141 (319)
                      ..|++++|.+.+++..+.. +.+...+..+  ...+...|++++|...+...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            5555555555555555442 2222222222  22244445555555554443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.03  E-value=1.2e-08  Score=69.07  Aligned_cols=97  Identities=12%  Similarity=-0.016  Sum_probs=53.7

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC   90 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (319)
                      ..+......+.+.|++++|++.|++..+..+ .+..+|..+..++.+.|++++|.+.|++..+.... +...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence            3355555556666666666666666555432 24555555555666666666666666655554222 445555555555


Q ss_pred             HhcCChhHHHHHHHHHHhC
Q 020976           91 FRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~  109 (319)
                      ...|++++|++.|++..+.
T Consensus        92 ~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            5556666666665555554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.03  E-value=7.7e-07  Score=74.85  Aligned_cols=166  Identities=7%  Similarity=-0.104  Sum_probs=93.8

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhh-CCCC-CChhhHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR-LRTARWILKELGD-SGHA-PNAITYT   84 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~-~~~~-~~~~~~~   84 (319)
                      --...|...+..+-. |+++.+..+|++....  .|+...|...+....+.++ .+....+|+.... .|.. .+...|.
T Consensus        13 ~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~   89 (493)
T 2uy1_A           13 SPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK   89 (493)
T ss_dssp             CHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence            334456666666554 6777888888777763  3577777777776666553 3455666666554 2322 2556666


Q ss_pred             HHHHHHH----hcCChhHHHHHHHHHHhCCCCCCc--c------------------------------------------
Q 020976           85 TIMKCCF----RNRKYKLGLEILSAMKRKGYTFDG--F------------------------------------------  116 (319)
Q Consensus        85 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~--~------------------------------------------  116 (319)
                      ..+..+.    ..++.+.+.++|++....  ++..  .                                          
T Consensus        90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~  167 (493)
T 2uy1_A           90 EYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI  167 (493)
T ss_dssp             HHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            6665443    234566677777776653  2110  1                                          


Q ss_pred             ------cHHHHHHHHHHc--Cc-----hHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          117 ------GYCTVIAAFVKI--GR-----LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       117 ------~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                            .|...+..-...  +-     .+.+..+|+++... .+.+...|...+..+.+.|+.+.|..++++....
T Consensus       168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence                  111111110000  00     22345566666654 2445666777777777888888888888888776

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.03  E-value=9.5e-07  Score=69.88  Aligned_cols=176  Identities=9%  Similarity=-0.010  Sum_probs=130.0

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-C-ch
Q 020976           55 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI-G-RL  131 (319)
Q Consensus        55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~  131 (319)
                      ..+.+..++|+++++++...++. +..+|+.--..+...+ .+++++++++.+.... +-+..+|+.-...+.+. + ++
T Consensus        64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred             HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence            33445567899999999886544 6677888777777788 5999999999999875 56777888877777776 7 88


Q ss_pred             HHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC---
Q 020976          132 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE--------AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN---  200 (319)
Q Consensus       132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  200 (319)
                      ++++.+++.+.+.. +-+..+|+.-...+.+.|.++        ++++.++++.+..+. |...|+.....+.+.+.   
T Consensus       142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence            99999999998863 447777777666666666666        888899998887655 77777777777777665   


Q ss_pred             ----hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 020976          201 ----IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK  235 (319)
Q Consensus       201 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  235 (319)
                          ++++...++...... +-|...|+.+-..+.+.|+
T Consensus       220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence                577777777777764 4566666665555555444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.02  E-value=2.9e-09  Score=82.94  Aligned_cols=99  Identities=11%  Similarity=0.023  Sum_probs=70.9

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHH
Q 020976           79 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN  158 (319)
Q Consensus        79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  158 (319)
                      +...+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..... +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            45566677777777788888888887777653 4466667777777777788888887777777652 335566777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHc
Q 020976          159 LYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       159 ~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      ++...|++++|...|++..+.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            777777777777777776654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.00  E-value=2.2e-08  Score=68.19  Aligned_cols=116  Identities=9%  Similarity=-0.086  Sum_probs=64.9

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      .+...|..+...+...|++++|+..|++..+... .+...+..+...+...|++++|.+.+++..+... .+...+..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la   91 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA   91 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence            3455566666666666666666666666655422 2455566666666666666666666666655422 2455555566


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020976           88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV  126 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  126 (319)
                      .++...|++++|.+.+++..+.. +.+...+..+..++.
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~  129 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence            66666666666666666655442 223333444444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.00  E-value=1.4e-08  Score=68.82  Aligned_cols=119  Identities=9%  Similarity=-0.089  Sum_probs=64.8

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +...+..+...+...|++++|+..|++...... .+...+..+...+...|++++|.+.+++...... .+...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence            344555566666666666666666666555422 2455555566666666666666666666555321 23455555555


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCc
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR  130 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  130 (319)
                      ++...|++++|.+.+++..+.. +.+...+..+..++.+.|+
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            5666666666666666555542 2234444444444444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.99  E-value=4.6e-08  Score=76.66  Aligned_cols=203  Identities=9%  Similarity=-0.008  Sum_probs=138.5

Q ss_pred             CCCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-----
Q 020976            5 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-----   79 (319)
Q Consensus         5 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----   79 (319)
                      ...|+..+...+...+.-.  ++.-......-.    +.....+...+..+...|++++|.+.+++..+.....+     
T Consensus        41 ~~~~~~~~l~~l~~~l~~~--~~~l~~~~~~~~----~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~  114 (293)
T 2qfc_A           41 AVYPSMDILQGIAAKLQIP--IIHFYEVLIYSD----IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQF  114 (293)
T ss_dssp             SSCCCHHHHHHHTTTSCCC--THHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCcC--HHHHhccccccc----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHH
Confidence            3467776665554444322  222222111111    12345666778888999999999999988877532211     


Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---CC--cccHHHHHHHHHHcCchHHHHHHHHHHHh---C-CCcc--
Q 020976           80 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT---FD--GFGYCTVIAAFVKIGRLKEATDYMEQMVT---D-GVQL--  148 (319)
Q Consensus        80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~~--  148 (319)
                      ...+..+...+...|++++|+..+++..+....   +.  ..+++.+...|...|++++|...+++...   . +..+  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~  194 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence            123445666778889999999999988754211   11  34788899999999999999999998873   2 1111  


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-cHHhHHHHHHHHhccCChhHH-HHHHHHHHh
Q 020976          149 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG----FEC-DKYTHTILIDGLCKAGNIKGA-RLHLEYMNK  213 (319)
Q Consensus       149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~  213 (319)
                      ...++..+..+|...|++++|...+++..+..    ... -..+|..+...+...|++++| ...++....
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            12578899999999999999999999876531    111 156788899999999999999 777777654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.99  E-value=2.9e-08  Score=66.63  Aligned_cols=98  Identities=12%  Similarity=0.108  Sum_probs=59.0

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC   89 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   89 (319)
                      ...|..+...+...|++++|++.|+++.+... .+..++..+...+...|++++|..+++++.... +.+..++..+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            34566666666666666666666666655422 245566666666666666666666666665542 2245555666666


Q ss_pred             HHhcCChhHHHHHHHHHHhC
Q 020976           90 CFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~  109 (319)
                      +...|++++|...++++.+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence            66666666666666666554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.98  E-value=3.6e-08  Score=69.94  Aligned_cols=128  Identities=17%  Similarity=0.062  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF  125 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  125 (319)
                      ..+..+...+...|++++|...|++...... .+..++..+..++...|++++|.+.+++..+.. +.+...+..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            4556666666777777777777777666432 256666666667777777777777777666653 34455566666666


Q ss_pred             HHcCchHHHHHHHHHHHhCCCccChhhHH--HHHHHHHhcCCHHHHHHHHHHH
Q 020976          126 VKIGRLKEATDYMEQMVTDGVQLDIVSYN--TLINLYCKEGKLEAAYLLLDEM  176 (319)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~  176 (319)
                      ...|++++|...+++..... +.+...+.  ..+..+...|++++|...+...
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            66677777777766666542 12333332  2223355556666666666554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.96  E-value=9.9e-09  Score=71.64  Aligned_cols=98  Identities=9%  Similarity=0.039  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA  124 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  124 (319)
                      ...+..+...+.+.|++++|...|+++....+. +...|..+..++...|++++|+..|++..+.. |.++..|..+..+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~  113 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            334555555555566666666666665554322 45555555555556666666666665555543 3345555555555


Q ss_pred             HHHcCchHHHHHHHHHHHhC
Q 020976          125 FVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus       125 ~~~~~~~~~a~~~~~~~~~~  144 (319)
                      +.+.|++++|...|++....
T Consensus       114 ~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            55556666666665555553

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.96  E-value=1.4e-08  Score=74.80  Aligned_cols=156  Identities=14%  Similarity=0.002  Sum_probs=90.7

Q ss_pred             hhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh----CCCC-CChhhHHHHHHHHHhcCC
Q 020976           21 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD----SGHA-PNAITYTTIMKCCFRNRK   95 (319)
Q Consensus        21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~   95 (319)
                      ...|++++|.++++.+... ......++..+...+...|++++|...+++...    .+.. ....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4567888888855555432 223566777777778888888888888777655    1111 123456666677777777


Q ss_pred             hhHHHHHHHHHHhC----CCC--CCcccHHHHHHHHHHcCchHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcC
Q 020976           96 YKLGLEILSAMKRK----GYT--FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEG  164 (319)
Q Consensus        96 ~~~a~~~~~~~~~~----~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~  164 (319)
                      +++|.+.+++..+.    +-.  .....+..+...+...|++++|...+++....    +.+ ....++..+..++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            77777777766543    101  11234555666666777777777777665532    111 01223455666666667


Q ss_pred             CHHHHHHHHHHHH
Q 020976          165 KLEAAYLLLDEME  177 (319)
Q Consensus       165 ~~~~a~~~~~~~~  177 (319)
                      ++++|...+++..
T Consensus       162 ~~~~A~~~~~~al  174 (203)
T 3gw4_A          162 NLLEAQQHWLRAR  174 (203)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            7777666666554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.96  E-value=3.9e-08  Score=66.48  Aligned_cols=91  Identities=11%  Similarity=0.086  Sum_probs=35.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976           86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK  165 (319)
Q Consensus        86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (319)
                      ....+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..++...|+
T Consensus        19 ~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~   96 (126)
T 4gco_A           19 KGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMRE   96 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCC
Confidence            3333444444444444444433332 2233333334444444444444444444433321 1223333444444444444


Q ss_pred             HHHHHHHHHHHHH
Q 020976          166 LEAAYLLLDEMEK  178 (319)
Q Consensus       166 ~~~a~~~~~~~~~  178 (319)
                      +++|.+.|++..+
T Consensus        97 ~~~A~~~~~~al~  109 (126)
T 4gco_A           97 WSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.96  E-value=9.4e-08  Score=74.92  Aligned_cols=159  Identities=12%  Similarity=0.013  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHhCCCccC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---Cc--HHh
Q 020976          118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-----IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE---CD--KYT  187 (319)
Q Consensus       118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~  187 (319)
                      +...+..+...|++++|...+++........+     ...+..+...+...|++++|...+.+..+....   +.  ..+
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            34445555566666666666655554321100     011223334445555666666666555532111   11  224


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHhc-CCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhhccC---------Cch
Q 020976          188 HTILIDGLCKAGNIKGARLHLEYMNKI-GFDSN-----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSF  252 (319)
Q Consensus       188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~  252 (319)
                      ++.+...|...|++++|...+++..+. ...|+     ..++..+..+|...|++++|...+++....         -..
T Consensus       158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~  237 (293)
T 2qfc_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            555555555566666666666555421 00111     134455555555555555555555543321         023


Q ss_pred             hHHHHHHHHHccCChhHH-HHHHHH
Q 020976          253 TYSSMVHNLCKAKRLPSA-SKLLLS  276 (319)
Q Consensus       253 ~~~~l~~~~~~~~~~~~a-~~~~~~  276 (319)
                      +|..+...|...|++++| ...+++
T Consensus       238 ~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          238 LYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            344445555555555555 333433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.95  E-value=1.1e-08  Score=73.67  Aligned_cols=122  Identities=5%  Similarity=0.019  Sum_probs=82.0

Q ss_pred             HhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCCh--
Q 020976           20 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC-CFRNRKY--   96 (319)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--   96 (319)
                      +...|++++|+..++...+... .+...+..+...+...|++++|...|++...... .+...+..+..+ +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence            3456777777777777766533 3667777777777788888888888877776432 256666666666 6677776  


Q ss_pred             hHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976           97 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus        97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  144 (319)
                      ++|...+++..+.. +.+...+..+...+...|++++|...|+++...
T Consensus        98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            77777777777664 445566667777777777777777777777765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.94  E-value=1.7e-08  Score=70.46  Aligned_cols=103  Identities=11%  Similarity=-0.010  Sum_probs=90.7

Q ss_pred             CCc-chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976            6 LTP-CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT   84 (319)
Q Consensus         6 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (319)
                      +.| +...+..+...+.+.|++++|+..|+...+..+. +...|..+..++...|++++|...|++.....+. ++..|.
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~  108 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVF  108 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHH
Confidence            444 4556888889999999999999999999987543 7889999999999999999999999999986533 688899


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCC
Q 020976           85 TIMKCCFRNRKYKLGLEILSAMKRKG  110 (319)
Q Consensus        85 ~l~~~~~~~~~~~~a~~~~~~~~~~~  110 (319)
                      .+..++...|++++|...|++..+..
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999873

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.93  E-value=5.1e-08  Score=66.31  Aligned_cols=117  Identities=12%  Similarity=0.010  Sum_probs=70.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      +...+..+...+...|++++|...|++...... .+...+..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            455666666777777777777777777665432 255666666666666777777777776666553 334555666666


Q ss_pred             HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE  163 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  163 (319)
                      ++.+.|++++|...|++..... +.+...+..+..++...
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence            6666666666666666665542 22334444444444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.92  E-value=6e-08  Score=65.02  Aligned_cols=97  Identities=14%  Similarity=0.183  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA  124 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  124 (319)
                      ...+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            3455555566666666666666666665532 1244555555555556666666666665555443 3344445555555


Q ss_pred             HHHcCchHHHHHHHHHHHh
Q 020976          125 FVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus       125 ~~~~~~~~~a~~~~~~~~~  143 (319)
                      +...|++++|...++++..
T Consensus        87 ~~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHH
Confidence            5555555555555555544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.92  E-value=4.8e-08  Score=78.10  Aligned_cols=151  Identities=9%  Similarity=0.010  Sum_probs=102.9

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--------------hhhHHHHHHH
Q 020976           24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN--------------AITYTTIMKC   89 (319)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~   89 (319)
                      +++++|++.|+...+... -+...+..+...+.+.|++++|...|++.........              ..+|..+..+
T Consensus       127 ~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            444555555444332211 1456777777777777888888888877776432211              4677778888


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976           90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA  169 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  169 (319)
                      +.+.|++++|+..+++..+.. +.+...+..+..++...|++++|+..|++..... +.+...+..+..++...|+.+++
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888887764 4566777777888888888888888888877752 33566777777788888887777


Q ss_pred             -HHHHHHHH
Q 020976          170 -YLLLDEME  177 (319)
Q Consensus       170 -~~~~~~~~  177 (319)
                       ...+..|.
T Consensus       284 ~~~~~~~~~  292 (336)
T 1p5q_A          284 EKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence             44555554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.92  E-value=2.5e-08  Score=73.43  Aligned_cols=157  Identities=11%  Similarity=-0.062  Sum_probs=91.7

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCcccHHHHHHHHHHcCc
Q 020976           56 CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK----GY-TFDGFGYCTVIAAFVKIGR  130 (319)
Q Consensus        56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~  130 (319)
                      ...|++++|.+.++.+... ......++..+...+...|++++|...+++....    +. +....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            3567788888755544332 2234566777777777888888888877776651    11 1223456666667777777


Q ss_pred             hHHHHHHHHHHHhC----CCc--cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCc--HHhHHHHHHHHhccC
Q 020976          131 LKEATDYMEQMVTD----GVQ--LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---FECD--KYTHTILIDGLCKAG  199 (319)
Q Consensus       131 ~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~  199 (319)
                      +++|...+++....    +..  .....+..+...+...|++++|...+++.....   ..+.  ..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            77777777766542    111  123345666677777777777777777665321   1111  123455666666677


Q ss_pred             ChhHHHHHHHHHHh
Q 020976          200 NIKGARLHLEYMNK  213 (319)
Q Consensus       200 ~~~~a~~~~~~~~~  213 (319)
                      ++++|...+++..+
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            77777666665543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.89  E-value=6.9e-08  Score=65.31  Aligned_cols=119  Identities=11%  Similarity=-0.017  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      +...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            34455556666666666666666666665542 2245556666666666666666666666665543 334445555555


Q ss_pred             HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK  165 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (319)
                      .+...|++++|...+++..... +.+...+..+..++...|+
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            6666666666666666655542 2234444455555544443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.87  E-value=2e-08  Score=70.09  Aligned_cols=97  Identities=14%  Similarity=0.090  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA  124 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  124 (319)
                      ...+..+...+...|++++|...|++.....+ .+...|..+..++...|++++|++.|++..... +.++..+..+..+
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~   98 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence            34455555555666666666666666555422 245555555566666666666666666655543 3344555555556


Q ss_pred             HHHcCchHHHHHHHHHHHh
Q 020976          125 FVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus       125 ~~~~~~~~~a~~~~~~~~~  143 (319)
                      +...|++++|...|++...
T Consensus        99 ~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            6666666666666665554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.86  E-value=5.7e-08  Score=69.95  Aligned_cols=118  Identities=8%  Similarity=0.048  Sum_probs=51.2

Q ss_pred             cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH-HHHcCch--HHH
Q 020976           58 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA-FVKIGRL--KEA  134 (319)
Q Consensus        58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~~a  134 (319)
                      .|++++|...+++...... .+...+..+..++...|++++|...|++..+.. +.+...+..+..+ +...|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            3444555555554444321 234444455555555555555555555544432 2233334444444 3444444  455


Q ss_pred             HHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      ...+++..... +.+...+..+..++...|++++|...+++..+
T Consensus       101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            55554444431 12233444444444444555555444444444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.85  E-value=6.8e-08  Score=66.81  Aligned_cols=96  Identities=8%  Similarity=-0.105  Sum_probs=51.8

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF   91 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (319)
                      .+..+...+.+.|++++|+..|+.....++ .+...|..+..++...|++++|...|++.....+. +...+..+..++.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence            344445555555666666666655555422 24555555555555566666666666555554322 4445555555555


Q ss_pred             hcCChhHHHHHHHHHHhC
Q 020976           92 RNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~  109 (319)
                      ..|++++|.+.|++..+.
T Consensus        98 ~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            556666665555555543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.85  E-value=9.3e-08  Score=76.46  Aligned_cols=152  Identities=9%  Similarity=-0.026  Sum_probs=115.0

Q ss_pred             cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------cccHHHHH
Q 020976           58 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD---------------GFGYCTVI  122 (319)
Q Consensus        58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~ll  122 (319)
                      .+++++|.+.++...... +-+...+..+...+.+.|++++|+..|++..+.. +.+               ...|..+.
T Consensus       126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla  203 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLA  203 (336)
T ss_dssp             EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHH
Confidence            355566665555443321 1156778888888999999999999999888764 222               37888888


Q ss_pred             HHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChh
Q 020976          123 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK  202 (319)
Q Consensus       123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  202 (319)
                      .++.+.|++++|+..+++..... +.+...+..+..++...|++++|...|++..+..+. +...+..+..++...|+.+
T Consensus       204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999988863 446778888899999999999999999998887543 5667888888888888888


Q ss_pred             HH-HHHHHHHHh
Q 020976          203 GA-RLHLEYMNK  213 (319)
Q Consensus       203 ~a-~~~~~~~~~  213 (319)
                      ++ ...+..|..
T Consensus       282 ~a~~~~~~~~~~  293 (336)
T 1p5q_A          282 AREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            87 445555543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.84  E-value=3e-07  Score=70.35  Aligned_cols=188  Identities=12%  Similarity=-0.050  Sum_probs=112.8

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHhhCCCCCC---------------
Q 020976           22 KNRYTDNALRMFRGLQKHGFVPELVTYNIL-------IKGLCKAGRLRTARWILKELGDSGHAPN---------------   79 (319)
Q Consensus        22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------   79 (319)
                      ..++...|.+.|.++.+..+. ....|..+       ...+...++..++...+..-..  +.|+               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence            577888888888888776433 55666665       3444444444444444444333  2221               


Q ss_pred             -------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC--h
Q 020976           80 -------AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD--I  150 (319)
Q Consensus        80 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~  150 (319)
                             ....-.+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                   1122334556667778888888877776543  322244455556777788888887777544321 111  2


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976          151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIG  215 (319)
Q Consensus       151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  215 (319)
                      ..+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|...|+++....
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3566677777778888888888877764332143  2344556666677777788887777777653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.84  E-value=1.2e-07  Score=72.47  Aligned_cols=183  Identities=8%  Similarity=-0.073  Sum_probs=124.7

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccHHHH-------HHHHHHcCchHHHHHHHHHHHhCCCccC---------------
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTV-------IAAFVKIGRLKEATDYMEQMVTDGVQLD---------------  149 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------  149 (319)
                      ..++...|.+.|.++.+.. +-....|..+       ...+.+.++..+++..+.....  +.|+               
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence            5788999999999998875 4456667766       4555555555555555555443  1221               


Q ss_pred             -------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--h
Q 020976          150 -------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN--L  220 (319)
Q Consensus       150 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~  220 (319)
                             ....-.+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                   1123446677888899999999988877654  333355556667788889999988887554421 111  2


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHhhccCC--c----hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          221 EAYNCIVDRLGKDGKIDHAINVFESMEVKD--S----FTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      ..+..+..++...|++++|+..|++....+  +    ........++.+.|+.++|..+|+++...
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            366777888888888888888888875332  2    24556667778888888888888888876

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.84  E-value=2.4e-07  Score=61.35  Aligned_cols=99  Identities=12%  Similarity=-0.048  Sum_probs=63.9

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      ++..+..+...+...|++++|...|+....... .+...+..+...+...|++++|...+++...... .+...+..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence            345566666677777777777777777665432 2556666666667777777777777776665432 24556666666


Q ss_pred             HHHhcCChhHHHHHHHHHHhC
Q 020976           89 CCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      ++...|++++|.+.+++..+.
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHhhHHHHHHHHHHHHHc
Confidence            666677777777777666654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.83  E-value=3.7e-06  Score=66.21  Aligned_cols=131  Identities=9%  Similarity=-0.044  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--C
Q 020976           28 NALRMFRGLQKHGFVPELVTYNILIKGLCKAGR----------LRTARWILKELGDSGHAPNAITYTTIMKCCFRNR--K   95 (319)
Q Consensus        28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~   95 (319)
                      +|+++++.+...++. +..+|+.--..+...+.          +++++.+++.+....++ +..+|+.-..++...+  .
T Consensus        48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCccc
Confidence            566666666654332 33444433333322222          45555566665554332 5555555555555555  2


Q ss_pred             hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCc-hHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 020976           96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR-LKEATDYMEQMVTDGVQLDIVSYNTLINLYCK  162 (319)
Q Consensus        96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (319)
                      +++++++++++.+.. +-|..+|+.-...+...|. ++++++.++.+.... +-|..+|+.....+..
T Consensus       126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~  191 (331)
T 3dss_A          126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ  191 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence            556666666666554 4455555555555555555 355666666655543 2344555544444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.83  E-value=1.4e-07  Score=65.70  Aligned_cols=99  Identities=8%  Similarity=-0.087  Sum_probs=87.3

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +...+..+...+.+.|++++|+..|+....... .+...|..+..++...|++++|...|++.....+. +...+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence            456678888899999999999999999988644 37889999999999999999999999999886433 6788999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhC
Q 020976           89 CCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      ++...|++++|.+.|++..+.
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999998876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.81  E-value=2.2e-07  Score=62.65  Aligned_cols=98  Identities=14%  Similarity=0.075  Sum_probs=63.3

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC   89 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   89 (319)
                      ...|..+...+.+.|++++|+..|++..+... .+...|..+..++.+.|++++|...+++..+.... +...|..+..+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence            44566666667777777777777777666532 25666666677777777777777777776664322 45566666666


Q ss_pred             HHhcCChhHHHHHHHHHHhC
Q 020976           90 CFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~  109 (319)
                      +...|++++|.+.|++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHh
Confidence            66677777777666666544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.81  E-value=8.4e-09  Score=75.88  Aligned_cols=123  Identities=13%  Similarity=0.079  Sum_probs=58.2

Q ss_pred             HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh----------------h
Q 020976           18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA----------------I   81 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~   81 (319)
                      ......|+++++.+.|+.-.... ......+..+...+...|++++|...|++....... +.                .
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHH
Confidence            33444555555555554322210 113455666677777777777777777777663221 11                3


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976           82 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus        82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  143 (319)
                      .+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++...
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            44444455555555555555555554442 23344444444455555555555555555444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.78  E-value=1.1e-05  Score=67.83  Aligned_cols=289  Identities=8%  Similarity=-0.062  Sum_probs=152.5

Q ss_pred             cchHhHHHHHHHHh----hcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH-------------hcCChhHHHHHHH
Q 020976            8 PCTATFNIMLNGLC----KNRYTDNALRMFRGLQKHGFVPEL-VTYNILIKGLC-------------KAGRLRTARWILK   69 (319)
Q Consensus         8 p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~-------------~~~~~~~a~~~~~   69 (319)
                      ++...|...+..+.    .+++.+.+.++|++..... ..+. ..|......-.             ..+.+..|..+++
T Consensus        83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~  161 (493)
T 2uy1_A           83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQ  161 (493)
T ss_dssp             TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHH
Confidence            36677888877765    3567889999999998731 1121 22222111100             0112233344444


Q ss_pred             HHhhCCCCCChhhHHHHHHHHHhcC--C-----hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHH
Q 020976           70 ELGDSGHAPNAITYTTIMKCCFRNR--K-----YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV  142 (319)
Q Consensus        70 ~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  142 (319)
                      .+...-...+...|...+..-...+  -     .+.+..+|+++.... +.++..|...+..+.+.|+.+.|..++++..
T Consensus       162 ~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi  240 (493)
T 2uy1_A          162 QIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGI  240 (493)
T ss_dssp             HHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4332100013335555544322211  0     234566777776653 5556667777777777788888888888877


Q ss_pred             hCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------CCCcHHhHHHHHHHHhccCChhHHHHHHHH
Q 020976          143 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG------------FECDKYTHTILIDGLCKAGNIKGARLHLEY  210 (319)
Q Consensus       143 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  210 (319)
                      ..  |.+...+..    |....+.++.   ++.+.+.-            .......|...+....+.++.+.|..+|+.
T Consensus       241 ~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~  311 (493)
T 2uy1_A          241 EM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE  311 (493)
T ss_dssp             HH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            76  333322221    2221111111   22222110            001123455556655566677778878777


Q ss_pred             HHhcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCH
Q 020976          211 MNKIGFDSNLEAYNCIVDRLGKD-GKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK  286 (319)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  286 (319)
                      . +.. ..+...|...+..-... ++++.|..+|+.....   ++..|...+......|+.+.|..+|+++.     ...
T Consensus       312 A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~  384 (493)
T 2uy1_A          312 L-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTS  384 (493)
T ss_dssp             H-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBH
T ss_pred             h-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHH
Confidence            7 321 12333443222222222 3577777777765532   44455566666667777777777777752     245


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          287 SAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       287 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      ..|...+.--...|+.+.+.+++++...
T Consensus       385 ~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          385 RMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6677777666667777777777766553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.78  E-value=3.4e-07  Score=64.92  Aligned_cols=100  Identities=9%  Similarity=-0.008  Sum_probs=77.1

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      .+...|..+...+.+.|++++|++.|++..+.... +...|..+..+|...|++++|...|++....... +...|..+.
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg   86 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            45666777888888888888888888888775432 6777888888888888888888888888775432 577778888


Q ss_pred             HHHHhcCChhHHHHHHHHHHhC
Q 020976           88 KCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      .++...|++++|.+.|++..+.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh
Confidence            8888888888888888887765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.77  E-value=2.3e-07  Score=63.45  Aligned_cols=100  Identities=12%  Similarity=-0.013  Sum_probs=66.3

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      .+...|..+...+...|++++|+..|+...+... .+...|..+..++...|++++|...+++....... +...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence            3456666677777777777777777777666532 25666677777777777777777777777664322 556666677


Q ss_pred             HHHHhcCChhHHHHHHHHHHhC
Q 020976           88 KCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      .++...|++++|...|++..+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            7777777777777777666544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.77  E-value=1.9e-07  Score=63.20  Aligned_cols=97  Identities=8%  Similarity=0.025  Sum_probs=54.3

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CC----hhhHH
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA--PN----AITYT   84 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~   84 (319)
                      .++..+...+.+.|++++|++.|++..+..+. +...|..+..+|...|++++|++.+++..+....  ++    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            34555666666666666666666666654322 4556666666666666666666666665542111  01    12344


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHh
Q 020976           85 TIMKCCFRNRKYKLGLEILSAMKR  108 (319)
Q Consensus        85 ~l~~~~~~~~~~~~a~~~~~~~~~  108 (319)
                      .+..++...|++++|++.|++...
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455555555566666666555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.76  E-value=2.6e-07  Score=62.32  Aligned_cols=96  Identities=10%  Similarity=-0.014  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF  125 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  125 (319)
                      ..+..+...+.+.|++++|...|++..+... .+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            4455555556666666666666666655422 245555556666666666666666666655543 33444555555555


Q ss_pred             HHcCchHHHHHHHHHHHh
Q 020976          126 VKIGRLKEATDYMEQMVT  143 (319)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~  143 (319)
                      ...|++++|...|++...
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            556666666665555554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.75  E-value=6.1e-07  Score=59.31  Aligned_cols=59  Identities=12%  Similarity=0.005  Sum_probs=22.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976           48 YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK  107 (319)
Q Consensus        48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  107 (319)
                      +..+...+...|++++|...|++...... .+...+..+..++...|++++|...+++..
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~   65 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTV   65 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            33334444444444444444444433211 123333333333444444444444444333

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.75  E-value=2.3e-07  Score=64.09  Aligned_cols=99  Identities=16%  Similarity=0.047  Sum_probs=69.6

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      +...+..+...+...|++++|...|++.....+ .+...|..+..++...|++++|+..|++..... +.++..+..+..
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   94 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence            344555666677777778888777777776533 256677777777777777777777777777664 445666777777


Q ss_pred             HHHHcCchHHHHHHHHHHHhC
Q 020976          124 AFVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~  144 (319)
                      ++...|++++|...|+.....
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            777777777777777777654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.74  E-value=1.8e-05  Score=62.39  Aligned_cols=175  Identities=8%  Similarity=-0.006  Sum_probs=106.3

Q ss_pred             HHHHHHHHHH---HHhcCChh-HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCC
Q 020976           45 LVTYNILIKG---LCKAGRLR-TARWILKELGDSGHAPNAITYTTIMKCCFRNRK----------YKLGLEILSAMKRKG  110 (319)
Q Consensus        45 ~~~~~~l~~~---~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~  110 (319)
                      ...|..+...   ..+.|.+. +|+++++.+...++. +..+|+.--..+...+.          +++++.+++.+....
T Consensus        26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~  104 (331)
T 3dss_A           26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  104 (331)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence            3445444433   33456654 788888888875433 45556654444433332          567777777777654


Q ss_pred             CCCCcccHHHHHHHHHHcCc--hHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCcHHh
Q 020976          111 YTFDGFGYCTVIAAFVKIGR--LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK-LEAAYLLLDEMEKQGFECDKYT  187 (319)
Q Consensus       111 ~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~  187 (319)
                       +-+..+|+.-...+.+.++  +++++.+++.+.+.. +-+..+|+.-...+...|. ++++++.++.+.+..+. |...
T Consensus       105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SA  181 (331)
T 3dss_A          105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS  181 (331)
T ss_dssp             -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHH
T ss_pred             -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHH
Confidence             5566777776666666663  678888888877753 3466777776666777777 47788888877776544 5556


Q ss_pred             HHHHHHHHhcc--------------CChhHHHHHHHHHHhcCCCCChhhHH
Q 020976          188 HTILIDGLCKA--------------GNIKGARLHLEYMNKIGFDSNLEAYN  224 (319)
Q Consensus       188 ~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~  224 (319)
                      |+.....+...              +.++++...+....... |-|...|+
T Consensus       182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~  231 (331)
T 3dss_A          182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWF  231 (331)
T ss_dssp             HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            65555444433              23455566665555543 33444444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.73  E-value=3.5e-07  Score=67.08  Aligned_cols=132  Identities=9%  Similarity=-0.114  Sum_probs=99.6

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---------------LVTYNILIKGLCKAGRLRTARWILKELGDS   74 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   74 (319)
                      ...+..+...+...|++++|+..|++..+......               ..++..+..++...|++++|...+++....
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            44577788889999999999999999987532211               278888999999999999999999999886


Q ss_pred             CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHH-HHHHHHHh
Q 020976           75 GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT-DYMEQMVT  143 (319)
Q Consensus        75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~  143 (319)
                      . +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...++..++. ..+..+..
T Consensus       118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4 3368889999999999999999999999998774 446667777777777766666555 44444433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.72  E-value=1.6e-07  Score=63.44  Aligned_cols=99  Identities=15%  Similarity=0.179  Sum_probs=65.7

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCC----hhhH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH--APN----AITY   83 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~   83 (319)
                      ...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++......  .++    ..++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            4556667777777777777777777776653 23566677777777777777777777777665321  111    4556


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           84 TTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        84 ~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      ..+..++...|++++|.+.+++..+.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            66666667777777777777766654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.70  E-value=1.8e-06  Score=71.52  Aligned_cols=193  Identities=7%  Similarity=-0.012  Sum_probs=108.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCc----------------ccHHHHHHHHHHcCchHHHHHHHHHHHhC-CCccC
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRKGYTFDG----------------FGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLD  149 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~  149 (319)
                      .+.+.+.|++++|++.|..+.+..-....                ..+..+...|...|++++|.+.+..+... +..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            45567778888888888888765311110                12455667777777777777777766542 00111


Q ss_pred             h----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhc--CC--
Q 020976          150 I----VSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--GF--  216 (319)
Q Consensus       150 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--  216 (319)
                      .    .+.+.+...+...|+++++.+++......    +..+ -..++..+...+...|++++|..+++.+...  +.  
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            1    11222333334456677777777665431    2222 1345566667777777777777777666543  11  


Q ss_pred             -CCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----C-----chhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020976          217 -DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----D-----SFTYSSMVHNLCKAKRLPSASKLLLSCLK  279 (319)
Q Consensus       217 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  279 (319)
                       +....++..++..|...|++++|..++++....     +     ...+..+...+...+++++|...|.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             111345566666677777777777766654422     1     12344455555666666666666666544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.70  E-value=5e-07  Score=61.04  Aligned_cols=59  Identities=12%  Similarity=0.071  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976           48 YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK  107 (319)
Q Consensus        48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  107 (319)
                      +..+...+.+.|++++|++.|++..+..+. +..+|..+..+|...|++++|++.+++..
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            333444444444444444444444432211 23334444444444444444444444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.70  E-value=3e-07  Score=60.26  Aligned_cols=25  Identities=8%  Similarity=-0.121  Sum_probs=10.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEME  177 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~  177 (319)
                      +..+..++...|++++|...+++..
T Consensus        43 ~~~~a~~~~~~~~~~~A~~~~~~a~   67 (112)
T 2kck_A           43 WLMKGKALYNLERYEEAVDCYNYVI   67 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3333344444444444444444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.70  E-value=4.8e-07  Score=59.21  Aligned_cols=99  Identities=9%  Similarity=-0.115  Sum_probs=68.2

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--ChhhHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP--NAITYTTI   86 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l   86 (319)
                      +...|..+...+...|++++|+..|++..+... .+...+..+...+...|++++|.+.+++..+.. +.  +...+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l   82 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK   82 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence            445566677777777777777777777766532 256667777777777777777777777776642 22  45666777


Q ss_pred             HHHHHhc-CChhHHHHHHHHHHhC
Q 020976           87 MKCCFRN-RKYKLGLEILSAMKRK  109 (319)
Q Consensus        87 ~~~~~~~-~~~~~a~~~~~~~~~~  109 (319)
                      ..++... |++++|.+.++.....
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhc
Confidence            7777777 7777777777777665

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=8.8e-07  Score=61.29  Aligned_cols=98  Identities=9%  Similarity=-0.126  Sum_probs=57.1

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT   84 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (319)
                      +...+..+...+...|++++|++.|++..+.  .|+    ...+..+...+...|++++|...+++...... .+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence            4455566666666666666666666666553  233    45555566666666666666666666555321 1445555


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           85 TIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        85 ~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      .+..++...|++++|.+.+++..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            5556666666666666666665554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.68  E-value=5.6e-07  Score=61.50  Aligned_cols=98  Identities=9%  Similarity=-0.037  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      +...+..+...+...|++++|...|++...... .+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence            556666677777777777777777777666432 245666667777777777777777777766654 345556666666


Q ss_pred             HHHHcCchHHHHHHHHHHHh
Q 020976          124 AFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~  143 (319)
                      ++...|++++|...|++...
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            67777777777777766655

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.66  E-value=3.9e-07  Score=61.00  Aligned_cols=95  Identities=9%  Similarity=-0.112  Sum_probs=56.4

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR   92 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (319)
                      +..+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|...|++..+..+. +...+..+..++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            444555566666666666666666654322 5556666666666666666666666666654322 45556666666666


Q ss_pred             cCChhHHHHHHHHHHhC
Q 020976           93 NRKYKLGLEILSAMKRK  109 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~~  109 (319)
                      .|++++|+..+++..+.
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           98 EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            66666666666665543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.66  E-value=1.1e-06  Score=72.89  Aligned_cols=199  Identities=9%  Similarity=-0.049  Sum_probs=142.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCCCh----------------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC
Q 020976           51 LIKGLCKAGRLRTARWILKELGDSGHAPNA----------------ITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-TF  113 (319)
Q Consensus        51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~  113 (319)
                      -...+.+.|++++|.+.|.++.+.......                .++..+...|...|++++|.+.+..+...-- .+
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            355678899999999999999886433221                1377889999999999999999988765310 11


Q ss_pred             Cc----ccHHHHHHHHHHcCchHHHHHHHHHHHhC----CCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-
Q 020976          114 DG----FGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GF-  181 (319)
Q Consensus       114 ~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-  181 (319)
                      +.    .+.+.+-..+...|+++.+..+++.....    +..+ -..++..+...+...|++++|..++.+....  +. 
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            11    12222333344568899999999887652    2222 2456788999999999999999999988643  11 


Q ss_pred             -CC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhc--CCC-C-C--hhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 020976          182 -EC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--GFD-S-N--LEAYNCIVDRLGKDGKIDHAINVFESMEVK  249 (319)
Q Consensus       182 -~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  249 (319)
                       .+ ...++..++..|...|++++|..+++.....  .+. | .  ...+..+...+...|++++|...|.+....
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence             11 2357888899999999999999999987653  111 1 1  245566677788899999999998876654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.65  E-value=7.7e-07  Score=63.06  Aligned_cols=99  Identities=10%  Similarity=-0.071  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      +...+..+...+...|++++|.+.|++..+.... +...|..+..++...|++++|+..+++..+.. +.+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4556677777777777777777777777765322 56677777777777777777777777777664 445666777777


Q ss_pred             HHHHcCchHHHHHHHHHHHhC
Q 020976          124 AFVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~  144 (319)
                      ++...|++++|...|++....
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            777777777777777777664

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.63  E-value=4.4e-07  Score=61.25  Aligned_cols=96  Identities=15%  Similarity=0.143  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-------cccH
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD-------GFGY  118 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~  118 (319)
                      ..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..... +.+       ..++
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~   82 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHH
Confidence            445555556666666666666666665542 2245555555556666666666666666555432 111       3344


Q ss_pred             HHHHHHHHHcCchHHHHHHHHHHHh
Q 020976          119 CTVIAAFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus       119 ~~ll~~~~~~~~~~~a~~~~~~~~~  143 (319)
                      ..+..++...|++++|...|++...
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4444555555555555555555544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=3e-06  Score=58.54  Aligned_cols=60  Identities=17%  Similarity=0.118  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      +..+..++...|++++|+..+++..... +.+...+..+..++...|++++|...|++..+
T Consensus        68 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A           68 HRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3333344444444444444444443321 11233344444444444444444444444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.60  E-value=6.1e-08  Score=81.28  Aligned_cols=125  Identities=11%  Similarity=0.009  Sum_probs=99.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF   91 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (319)
                      .|..+...+.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|.+.+++..+... .+..++..+..++.
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~   85 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM   85 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            3444555677899999999999999886433 688999999999999999999999999998743 36788999999999


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH--HHHcCchHHHHHHHH
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA--FVKIGRLKEATDYME  139 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~  139 (319)
                      ..|++++|.+.+++..+.. +.+...+..+..+  +.+.|++++|++.++
T Consensus        86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999998874 4455566666666  788899999999988

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.59  E-value=1.4e-06  Score=72.75  Aligned_cols=125  Identities=10%  Similarity=0.021  Sum_probs=75.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--------------hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN--------------AITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      ....|..+...+.+.|++++|...|++..+......              ..+|..+..++.+.|++++|+..+++..+.
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            345556666666666666666666666655321111              356666667777777777777777776665


Q ss_pred             CCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHH
Q 020976          110 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY  170 (319)
Q Consensus       110 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  170 (319)
                      . +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.++.+++.
T Consensus       347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4 4455666666677777777777777777766642 234455666666666666666554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.55  E-value=9.4e-07  Score=59.10  Aligned_cols=93  Identities=10%  Similarity=-0.026  Sum_probs=49.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc
Q 020976           49 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI  128 (319)
Q Consensus        49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  128 (319)
                      ..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..+++..+.. +.+...+..+..++...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            33444555555555555555555553221 45555555555555555555555555555543 33444555555555555


Q ss_pred             CchHHHHHHHHHHHh
Q 020976          129 GRLKEATDYMEQMVT  143 (319)
Q Consensus       129 ~~~~~a~~~~~~~~~  143 (319)
                      |++++|+..+++..+
T Consensus        99 g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           99 HNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.54  E-value=3.7e-06  Score=56.64  Aligned_cols=94  Identities=12%  Similarity=0.002  Sum_probs=59.3

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---hhhHHHHH
Q 020976           14 NIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL---VTYNILIKGLCKAGRLRTARWILKELGDSGHAPN---AITYTTIM   87 (319)
Q Consensus        14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~   87 (319)
                      ..+...+...|++++|++.|+.+.+.... +.   ..+..+..++...|++++|...|+++...... +   ...+..+.
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la   83 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence            34555666777777777777776664322 22   35666666777777777777777776664322 2   44566666


Q ss_pred             HHHHhcCChhHHHHHHHHHHhC
Q 020976           88 KCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      .++...|++++|...|+++.+.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            6667777777777777766655

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.54  E-value=8.3e-07  Score=62.33  Aligned_cols=60  Identities=13%  Similarity=0.096  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          118 YCTVIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEME  177 (319)
Q Consensus       118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  177 (319)
                      +..+...+...|++++|...+++....    +.+ .....+..+...+...|++++|.+.+++..
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            333444444555555555555444321    100 012234444445555555555555555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.53  E-value=1.5e-06  Score=72.82  Aligned_cols=122  Identities=16%  Similarity=0.082  Sum_probs=85.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC
Q 020976           85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG  164 (319)
Q Consensus        85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (319)
                      .+...+.+.|++++|++.+++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|
T Consensus        11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1           11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   88 (477)
T ss_dssp             SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            33445667788888888888887764 4457778888888888888888888888888763 345677778888888888


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHhHHHHHHH--HhccCChhHHHHHHH
Q 020976          165 KLEAAYLLLDEMEKQGFECDKYTHTILIDG--LCKAGNIKGARLHLE  209 (319)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~  209 (319)
                      ++++|.+.+++..+.... +...+..+..+  +.+.|++++|...++
T Consensus        89 ~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           89 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             CHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            888888888888775432 33344444444  667788888888777

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.53  E-value=1.2e-06  Score=61.56  Aligned_cols=137  Identities=14%  Similarity=0.033  Sum_probs=71.5

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CChhhHH
Q 020976          151 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CD----KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-SNLEAYN  224 (319)
Q Consensus       151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~  224 (319)
                      .++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|...++...+.... ++...  
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--   87 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV--   87 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH--
Confidence            34556666666677777777777665543111 01    124455555555666666666655554432100 00000  


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHc----CCcc-CHHHHHHHHHHHHhc
Q 020976          225 CIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKS----GVRI-LKSAQKAVVDGLRHS  299 (319)
Q Consensus       225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~  299 (319)
                                               ....+..+...+...|++++|...+++..+.    +..+ ....+..+...+...
T Consensus        88 -------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  142 (164)
T 3ro3_A           88 -------------------------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL  142 (164)
T ss_dssp             -------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence                                     1223444555555566666666655555432    1111 234566667777777


Q ss_pred             CCHHHHHHHHHHHHh
Q 020976          300 GCRREAKKIQSKIRM  314 (319)
Q Consensus       300 g~~~~a~~~~~~~~~  314 (319)
                      |++++|.+.+++..+
T Consensus       143 g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          143 GNHDQAMHFAEKHLE  157 (164)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH
Confidence            888888777776554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.51  E-value=1.5e-05  Score=68.19  Aligned_cols=175  Identities=10%  Similarity=-0.065  Sum_probs=137.4

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 020976           24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR----------LRTARWILKELGDSGHAPNAITYTTIMKCCFRN   93 (319)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   93 (319)
                      ...++|++.++.+...++. +..+|+.--.++...|+          ++++.+.++.+.....+ +..+|+.-..++.+.
T Consensus        43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL  120 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            3456889999999987554 67778777777777776          89999999999987554 788898888888888


Q ss_pred             C--ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC-chHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc-------
Q 020976           94 R--KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE-------  163 (319)
Q Consensus        94 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------  163 (319)
                      +  +++++++.++++.+.. +-+..+|+.-...+.+.| .++++++.++++.+.. +-+..+|+.....+.+.       
T Consensus       121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence            8  6799999999999886 667888888888888888 8899999999988864 44778888877776663       


Q ss_pred             -------CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhH
Q 020976          164 -------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG  203 (319)
Q Consensus       164 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  203 (319)
                             +.++++++.+++.....+. +...|...-..+...+..++
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence                   4578899999888876544 66677777777766666443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.51  E-value=1.8e-06  Score=69.83  Aligned_cols=97  Identities=11%  Similarity=-0.047  Sum_probs=51.4

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKH---------------GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH   76 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   76 (319)
                      .|..+...+.+.|++++|++.|++..+.               ..+.+..+|..+..+|.+.|++++|.+.+++..+...
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            3566666777777777777777776651               0011234444555555555555555555555554321


Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           77 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                       .+...+..+..++...|++++|++.|++..+.
T Consensus       305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence             13444455555555555555555555554444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.51  E-value=8.2e-06  Score=54.89  Aligned_cols=26  Identities=23%  Similarity=0.061  Sum_probs=11.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          153 YNTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       153 ~~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      +..+..++...|++++|...|+++.+
T Consensus        79 ~~~la~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           79 LLKLGLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33334444444444444444444443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.48  E-value=4.8e-07  Score=60.12  Aligned_cols=87  Identities=14%  Similarity=0.052  Sum_probs=56.5

Q ss_pred             hcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 020976           22 KNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG   99 (319)
Q Consensus        22 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   99 (319)
                      ..|++++|+..|++..+.+  -+.+...+..+..++...|++++|...|++..+..+. +...+..+..++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence            3567777777777777653  1224556677777777777777777777777765433 566677777777777777777


Q ss_pred             HHHHHHHHhC
Q 020976          100 LEILSAMKRK  109 (319)
Q Consensus       100 ~~~~~~~~~~  109 (319)
                      +..+++....
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777776654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.46  E-value=3.1e-06  Score=70.63  Aligned_cols=151  Identities=9%  Similarity=-0.019  Sum_probs=100.6

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------cccHHHH
Q 020976           57 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD---------------GFGYCTV  121 (319)
Q Consensus        57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l  121 (319)
                      ..+++++|.+.|+....... -....+..+...+.+.|++++|+..|++..+.. +.+               ...|..+
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nl  323 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKL-EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNL  323 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHH
Confidence            33455555555443332211 146677777888888888888888888877652 222               3677778


Q ss_pred             HHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCCh
Q 020976          122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI  201 (319)
Q Consensus       122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  201 (319)
                      ..++.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|++..+..+. +...+..+..++...++.
T Consensus       324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence            888888888888888888887753 345677778888888888888888888888775432 445667777777777777


Q ss_pred             hHHHH-HHHHH
Q 020976          202 KGARL-HLEYM  211 (319)
Q Consensus       202 ~~a~~-~~~~~  211 (319)
                      +++.. .+..|
T Consensus       402 ~~a~~~~~~~~  412 (457)
T 1kt0_A          402 NERDRRIYANM  412 (457)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            66643 34433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.44  E-value=4.9e-06  Score=58.73  Aligned_cols=100  Identities=15%  Similarity=0.071  Sum_probs=68.6

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKH--------GF---------VPELVTYNILIKGLCKAGRLRTARWILKEL   71 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   71 (319)
                      ....+......+.+.|++++|+..|+...+.        ..         +.+...|..+..+|.+.|++++|...+++.
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3456777888889999999999999887664        00         112345666667777777777777777777


Q ss_pred             hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           72 GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        72 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      ....+ .+...|..+..++...|++++|...|++....
T Consensus        90 l~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           90 LKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            66432 25666667777777777777777777776655

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.41  E-value=5.1e-06  Score=57.54  Aligned_cols=95  Identities=7%  Similarity=-0.133  Sum_probs=46.6

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFV-P-----EL-----VTYNILIKGLCKAGRLRTARWILKELGDS-----GH   76 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~   76 (319)
                      +......+.+.|++++|+..|++..+.... |     +.     ..|..+..++.+.|++++|+..+++..+.     .+
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            445555566667777777777766653222 0     11     14555555555555555555555555442     00


Q ss_pred             CC-ChhhH----HHHHHHHHhcCChhHHHHHHHHHH
Q 020976           77 AP-NAITY----TTIMKCCFRNRKYKLGLEILSAMK  107 (319)
Q Consensus        77 ~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~  107 (319)
                      .| +...|    .....++...|++++|+..|++..
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            12 22334    444444444444444444444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.40  E-value=1.6e-06  Score=72.50  Aligned_cols=123  Identities=11%  Similarity=-0.038  Sum_probs=90.0

Q ss_pred             HHhccCChhHHHHHHHHHHhcC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-----------CchhHH
Q 020976          194 GLCKAGNIKGARLHLEYMNKIG---FDS----NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYS  255 (319)
Q Consensus       194 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~  255 (319)
                      .+...|++++|..++++..+..   +.+    ...+++.+..+|...|++++|..++++....           ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3557788999988888776541   112    2467788888889999999988888765422           335688


Q ss_pred             HHHHHHHccCChhHHHHHHHHHHHc-----CCc-c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 020976          256 SMVHNLCKAKRLPSASKLLLSCLKS-----GVR-I-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK  316 (319)
Q Consensus       256 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (319)
                      .|...|...|++++|..++++.++-     |.. | ...+...+..++...|.+++|...+.+++++-
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999988887642     322 2 33455666677888999999999999988754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.39  E-value=3.7e-06  Score=68.05  Aligned_cols=137  Identities=10%  Similarity=-0.069  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF  125 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  125 (319)
                      ..+..+...+.+.|++++|.+.|++..+.-  ++.          .....       .+...... +.+...|..+..++
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~~-~~~~~~~~nla~~~  283 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKLQ-PVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGGH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHHH-HHHHHHHHHHHHHH
Confidence            346667777777888888888877776510  000          00000       00000010 22334455555555


Q ss_pred             HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHH
Q 020976          126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA  204 (319)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  204 (319)
                      .+.|++++|+..+++..+.. +.+...+..+..+|...|++++|.+.|++..+.... +...+..+...+...++.+++
T Consensus       284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555532 223445555555555666666666666555554322 334444444444444444444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.39  E-value=1.7e-06  Score=57.44  Aligned_cols=84  Identities=12%  Similarity=-0.001  Sum_probs=38.5

Q ss_pred             CChhHHHHHHHHHHhCC--CCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH
Q 020976           94 RKYKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL  171 (319)
Q Consensus        94 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  171 (319)
                      |++++|+..|++..+.+  -+.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence            44555555555555432  12233344444455555555555555555554432 2234444445555555555555555


Q ss_pred             HHHHHHH
Q 020976          172 LLDEMEK  178 (319)
Q Consensus       172 ~~~~~~~  178 (319)
                      .+++...
T Consensus        83 ~~~~al~   89 (117)
T 3k9i_A           83 LLLKIIA   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.37  E-value=1.9e-06  Score=68.84  Aligned_cols=148  Identities=11%  Similarity=0.059  Sum_probs=68.5

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC   90 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (319)
                      ..+..+...+.+.|++++|+..|++..+.  .|+...       +...++.+++...+   .       ..+|..+..++
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence            44556666677777777777777776653  233221       11112222222111   0       12566677777


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHH-HHhcCCHHHH
Q 020976           91 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL-YCKEGKLEAA  169 (319)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a  169 (319)
                      .+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..... +.+...+..+... ....+..+++
T Consensus       241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777654 4456667777777777777777777777776542 2233444444444 2334556667


Q ss_pred             HHHHHHHHHc
Q 020976          170 YLLLDEMEKQ  179 (319)
Q Consensus       170 ~~~~~~~~~~  179 (319)
                      ...|..+...
T Consensus       319 ~~~~~~~l~~  328 (338)
T 2if4_A          319 KEMYKGIFKG  328 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHhhCC
Confidence            7777776654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.36  E-value=9.3e-06  Score=57.25  Aligned_cols=63  Identities=16%  Similarity=0.140  Sum_probs=33.5

Q ss_pred             ccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          116 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      ..|..+..++.+.|++++|+..+++..... +.+...|..+..++...|++++|...|++..+.
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            344455555555555555555555555432 223445555555555555555555555555544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.29  E-value=5.8e-06  Score=66.07  Aligned_cols=93  Identities=14%  Similarity=0.031  Sum_probs=40.2

Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHH-HH
Q 020976          187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN-LC  262 (319)
Q Consensus       187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~-~~  262 (319)
                      .|..+..++.+.|++++|...++...+.. +.+...+..+..+|...|++++|...|++....   +...+..+... ..
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            55666666667777777777777666653 344566666666777777777777777666543   33334443333 22


Q ss_pred             ccCChhHHHHHHHHHHHc
Q 020976          263 KAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       263 ~~~~~~~a~~~~~~~~~~  280 (319)
                      ..+..+++...|.++...
T Consensus       311 ~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHhhCC
Confidence            234445556666665543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.28  E-value=9.4e-06  Score=56.23  Aligned_cols=109  Identities=13%  Similarity=-0.029  Sum_probs=58.6

Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCC
Q 020976          187 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKR  266 (319)
Q Consensus       187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~  266 (319)
                      .+......+...|++++|...|++.++..  |+...-        ..-+.          ...+...|..+..++...|+
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~--------~a~~~----------~~~~a~a~~n~g~al~~Lgr   72 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPE--------EAFDH----------AGFDAFCHAGLAEALAGLRS   72 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTT--------SCCCH----------HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcch--------hhhhh----------ccchHHHHHHHHHHHHHCCC
Confidence            34455555666777777777777766642  220000        00000          00011255666666666666


Q ss_pred             hhHHHHHHHHHHHc-----CCcc-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 020976          267 LPSASKLLLSCLKS-----GVRI-LKSAQ----KAVVDGLRHSGCRREAKKIQSKIRMA  315 (319)
Q Consensus       267 ~~~a~~~~~~~~~~-----~~~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (319)
                      +++|+..+++.++.     .+.| +...|    .....++...|++++|+..|++..+.
T Consensus        73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            66666666666553     1133 34555    66667777777777777777765443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.24  E-value=3.8e-05  Score=52.47  Aligned_cols=111  Identities=9%  Similarity=-0.085  Sum_probs=58.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHH
Q 020976           24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLG   99 (319)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a   99 (319)
                      +++++|++.|++..+.|. |+..    +...|...+.+++|.++|++..+.|   +...+..+...|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            345566666666655542 1222    4444545555555666666655542   44555555555555    4555666


Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCC
Q 020976          100 LEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDG  145 (319)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~  145 (319)
                      .++|++..+.|   ++..+..|...|..    .+++++|..+|++..+.|
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            66665555544   33444555555555    455555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.24  E-value=0.00013  Score=62.53  Aligned_cols=177  Identities=8%  Similarity=-0.024  Sum_probs=137.3

Q ss_pred             hcCC-hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976           57 KAGR-LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK----------YKLGLEILSAMKRKGYTFDGFGYCTVIAAF  125 (319)
Q Consensus        57 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  125 (319)
                      +.|. -++|.+.++++....+. +..+|+.--.++...++          ++++++.++.+.+.. +-+..+|..-...+
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l  117 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL  117 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3444 46789999999986544 56778777666766666          899999999999876 66778888888888


Q ss_pred             HHcC--chHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc----
Q 020976          126 VKIG--RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG-KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA----  198 (319)
Q Consensus       126 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  198 (319)
                      .+.+  ++++++..++++.+.. +-+..+|+.-..++.+.| .++++++.++++.+..+. +...|+.....+...    
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred             HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence            8889  6699999999999874 447888988888888888 899999999999887655 667777666665542    


Q ss_pred             ----------CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 020976          199 ----------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH  238 (319)
Q Consensus       199 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  238 (319)
                                +.++++.+.+....... +-+...|...-..+.+.++.++
T Consensus       196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                      45688888898888765 5567788877777777666433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.24  E-value=6.6e-06  Score=68.77  Aligned_cols=87  Identities=10%  Similarity=0.075  Sum_probs=43.0

Q ss_pred             hhcCChHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCC-CC-ChhhHHHH
Q 020976           21 CKNRYTDNALRMFRGLQKH---GFVP----ELVTYNILIKGLCKAGRLRTARWILKELGD-----SGH-AP-NAITYTTI   86 (319)
Q Consensus        21 ~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l   86 (319)
                      ..+|++++|+.++++.++.   -+.|    ...+++.|..+|...|++++|..++++..+     .|. .| ...+++.|
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3456666666666554431   0111    134555566666666666666655555433     111 11 13345555


Q ss_pred             HHHHHhcCChhHHHHHHHHHH
Q 020976           87 MKCCFRNRKYKLGLEILSAMK  107 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~  107 (319)
                      ...|...|++++|+.++++..
T Consensus       400 a~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          400 GLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            555555555555555555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.23  E-value=4.8e-05  Score=51.99  Aligned_cols=110  Identities=12%  Similarity=-0.007  Sum_probs=57.9

Q ss_pred             ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHH
Q 020976           60 RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEAT  135 (319)
Q Consensus        60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~  135 (319)
                      ++++|.++|++..+.|. |+..    +...|...+.+++|.+.|++..+.|   ++..+..|...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            45566666666655541 2222    4444444455555666666655554   34445555555555    45556666


Q ss_pred             HHHHHHHhCCCccChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 020976          136 DYMEQMVTDGVQLDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQG  180 (319)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  180 (319)
                      .+|++..+.|   +...+..+...|..    .++.++|..+|++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            6666555543   34444555555555    555555555555555543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.17  E-value=1.8e-05  Score=51.54  Aligned_cols=92  Identities=12%  Similarity=-0.053  Sum_probs=62.9

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-------h
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-------A   80 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~   80 (319)
                      ++...|..+...+...|++++|++.|++..+... .+...+..+..++...|++++|.+.+++.....  |+       .
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~   78 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS   78 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence            4566777788888888888888888888777533 367777788888888888888888888887643  33       3


Q ss_pred             hhHHHHHHHHHhcCChhHHHHH
Q 020976           81 ITYTTIMKCCFRNRKYKLGLEI  102 (319)
Q Consensus        81 ~~~~~l~~~~~~~~~~~~a~~~  102 (319)
                      ..+..+..++...|+.+.+...
T Consensus        79 ~~~~~~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           79 KLQYRLELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHHHHHHhHhhhHhH
Confidence            3444455555555555444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.11  E-value=5.3e-05  Score=47.19  Aligned_cols=79  Identities=13%  Similarity=0.036  Sum_probs=45.2

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC   89 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   89 (319)
                      ...+..+...+...|++++|+..|++..+... .+...+..+...+...|++++|...+++.....+ .+...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence            44556666666666666666666666655432 2455566666666666666666666666655422 134444444444


Q ss_pred             H
Q 020976           90 C   90 (319)
Q Consensus        90 ~   90 (319)
                      +
T Consensus        87 ~   87 (91)
T 1na3_A           87 K   87 (91)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.05  E-value=3.4e-05  Score=50.72  Aligned_cols=77  Identities=9%  Similarity=-0.026  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976           29 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK  107 (319)
Q Consensus        29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  107 (319)
                      |++.|++..+... .+...+..+...+...|++++|...|++...... .+...|..+..++...|++++|...|++..
T Consensus         4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444444444322 2344455555555555555555555555544321 134444444455555555555555554444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.04  E-value=2.3e-05  Score=50.96  Aligned_cols=65  Identities=15%  Similarity=0.148  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      +...+..+...+...|++++|.+.|++...... .+...+..+..++...|++++|++.+++..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            455666677777777777777777777766432 25666777777777777777777777777655

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.03  E-value=6.1e-05  Score=46.89  Aligned_cols=79  Identities=11%  Similarity=0.035  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA  124 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  124 (319)
                      ...+..+...+...|++++|...|++...... .+...+..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            44555566666666666666666666655422 245556666666666666666666666665543 2233444444433


Q ss_pred             H
Q 020976          125 F  125 (319)
Q Consensus       125 ~  125 (319)
                      +
T Consensus        87 ~   87 (91)
T 1na3_A           87 K   87 (91)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.02  E-value=6.2e-05  Score=49.43  Aligned_cols=81  Identities=14%  Similarity=0.042  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHH
Q 020976           62 RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM  141 (319)
Q Consensus        62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  141 (319)
                      +.|.+.|++..+... .+...+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++.
T Consensus         2 ~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            357778888877543 367888889999999999999999999988775 556778888889999999999999999988


Q ss_pred             HhC
Q 020976          142 VTD  144 (319)
Q Consensus       142 ~~~  144 (319)
                      ...
T Consensus        80 l~~   82 (115)
T 2kat_A           80 LAA   82 (115)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.98  E-value=3.1e-05  Score=53.51  Aligned_cols=87  Identities=7%  Similarity=-0.103  Sum_probs=57.1

Q ss_pred             hhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh----------HHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 020976           21 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR----------TARWILKELGDSGHAPNAITYTTIMKCC   90 (319)
Q Consensus        21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (319)
                      .+.+.+++|++.++...+.... +...|..+..++...++++          +|+..|++..+..+. +..+|..+..+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence            3456678888888887776443 7777777777777776653          777777777665332 456666677766


Q ss_pred             HhcC-----------ChhHHHHHHHHHHhC
Q 020976           91 FRNR-----------KYKLGLEILSAMKRK  109 (319)
Q Consensus        91 ~~~~-----------~~~~a~~~~~~~~~~  109 (319)
                      ...|           ++++|++.|++..+.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            6553           566666666666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.93  E-value=4e-05  Score=52.95  Aligned_cols=93  Identities=13%  Similarity=0.070  Sum_probs=57.1

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh----------hHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020976           57 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY----------KLGLEILSAMKRKGYTFDGFGYCTVIAAFV  126 (319)
Q Consensus        57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  126 (319)
                      +.+.+++|.+.++...+..+. +...|..+..++...+++          ++|+..|++..+.. +-+..+|..+..+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence            445577777777777765433 677777777777766654          36666666666654 334556666666666


Q ss_pred             HcC-----------chHHHHHHHHHHHhCCCccChhhH
Q 020976          127 KIG-----------RLKEATDYMEQMVTDGVQLDIVSY  153 (319)
Q Consensus       127 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~  153 (319)
                      ..|           ++++|++.|++..+.  .|+...|
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y  127 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY  127 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence            553           566666666666553  3444444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.88  E-value=8.4e-05  Score=47.49  Aligned_cols=64  Identities=19%  Similarity=-0.009  Sum_probs=44.4

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD   73 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   73 (319)
                      +...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4556667777777777777777777777665432 456677777777777777777777776654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.76  E-value=0.00016  Score=46.13  Aligned_cols=61  Identities=16%  Similarity=0.047  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM  106 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  106 (319)
                      ...+..+...+...|++++|...|++..+.... +...|..+..++...|++++|.+.+++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334444444444444444444444444433211 2334444444444444444444444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.63  E-value=0.0016  Score=51.65  Aligned_cols=73  Identities=10%  Similarity=-0.056  Sum_probs=40.4

Q ss_pred             cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH
Q 020976          148 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN  224 (319)
Q Consensus       148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  224 (319)
                      .+..+|..+...+...|++++|...+++....+  |+...|..+...+...|++++|...+++....  .|...+|.
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~  347 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY  347 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence            344555555555555566666666666666553  45555555555555666666666666665554  34444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.60  E-value=0.0034  Score=49.88  Aligned_cols=63  Identities=8%  Similarity=-0.064  Sum_probs=34.7

Q ss_pred             cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 020976          184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV  248 (319)
Q Consensus       184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  248 (319)
                      +..++..+...+...|++++|...+++....+  |+...|..+...+.-.|++++|.+.+++...
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            44455555444444566666666666665553  4544555555555556666666666655443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.56  E-value=0.021  Score=51.22  Aligned_cols=153  Identities=16%  Similarity=0.120  Sum_probs=93.9

Q ss_pred             HHHhcCChhHHHH-HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchH
Q 020976           54 GLCKAGRLRTARW-ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK  132 (319)
Q Consensus        54 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  132 (319)
                      .....+++++|.+ ++..+      |+......++..+.+.|.++.|+++.+.         +   ..-.......|+++
T Consensus       608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~  669 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLT  669 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHH
T ss_pred             HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHH
Confidence            3445677777766 44211      1122336666777777887777765521         1   11133456678888


Q ss_pred             HHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHH
Q 020976          133 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN  212 (319)
Q Consensus       133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  212 (319)
                      .|.++.+.+      .+...|..+...+.+.++++.|.+.|..+..         |..+...+...|+.+....+-+...
T Consensus       670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~  734 (814)
T 3mkq_A          670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE  734 (814)
T ss_dssp             HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence            888775432      3567888888888888888888888887642         3344445555677776666555555


Q ss_pred             hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976          213 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES  245 (319)
Q Consensus       213 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  245 (319)
                      ..|      -++....+|.+.|++++|.+++.+
T Consensus       735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          735 TTG------KFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence            433      223344456667777777766654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.49  E-value=0.00085  Score=55.22  Aligned_cols=61  Identities=8%  Similarity=-0.119  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCC-CCC-hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGD-----SGH-APN-AITYTTIMKCCFRNRKYKLGLEILSAM  106 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~  106 (319)
                      .+++.|..+|...|++++|..++++...     .|. .|+ ..+++.|...|...|++++|+.++++.
T Consensus       341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3444555555555555555555544432     111 111 233444444444555555554444443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.46  E-value=0.00075  Score=55.58  Aligned_cols=92  Identities=11%  Similarity=0.018  Sum_probs=56.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCC---CCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCCCccc
Q 020976           52 IKGLCKAGRLRTARWILKELGDSG---HAP----NAITYTTIMKCCFRNRKYKLGLEILSAMKRK-----G--YTFDGFG  117 (319)
Q Consensus        52 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~  117 (319)
                      +..+.+.|++++|..++++..+..   +.|    ...+++.+..+|...|++++|+.++++....     |  .+....+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            334456677777777777765421   112    2456677777777777777777777766531     1  1122345


Q ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHh
Q 020976          118 YCTVIAAFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus       118 ~~~ll~~~~~~~~~~~a~~~~~~~~~  143 (319)
                      ++.|...|...|++++|+.++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            66677777777777777777776654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.44  E-value=0.0004  Score=57.14  Aligned_cols=82  Identities=11%  Similarity=-0.072  Sum_probs=53.0

Q ss_pred             cCCHHHHHHHHHhhccC-----------CchhHHHHHHHHHccCChhHHHHHHHHHHHc-----CC-cc-CHHHHHHHHH
Q 020976          233 DGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-----GV-RI-LKSAQKAVVD  294 (319)
Q Consensus       233 ~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~  294 (319)
                      .|++++|..++++....           ...+++.+...|...|++++|..++++.+.-     |. .| ...+++.+..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            45667777666654321           2245677777777777777777777776542     21 22 3356777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHh
Q 020976          295 GLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       295 ~~~~~g~~~~a~~~~~~~~~  314 (319)
                      .|...|++++|..++++..+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            78888888888877776543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.44  E-value=0.00072  Score=55.69  Aligned_cols=60  Identities=12%  Similarity=-0.107  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHc-----C-Ccc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976          253 TYSSMVHNLCKAKRLPSASKLLLSCLKS-----G-VRI-LKSAQKAVVDGLRHSGCRREAKKIQSKI  312 (319)
Q Consensus       253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (319)
                      +++.+...|...|++++|+.++++.+.-     | ..| ...+++.+...|...|++++|..++++.
T Consensus       331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4455555555555555555555544431     1 111 2234555555555555555555555544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.32  E-value=0.0017  Score=40.94  Aligned_cols=55  Identities=16%  Similarity=0.225  Sum_probs=25.8

Q ss_pred             HHHHcCchHHHHHHHHHHHhCCCccChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGVQLDIV-SYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      .+.+.|++++|...+++..+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3444455555555555544431 12233 4444444555555555555555554443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.23  E-value=0.0053  Score=38.56  Aligned_cols=59  Identities=15%  Similarity=0.111  Sum_probs=47.8

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELV-TYNILIKGLCKAGRLRTARWILKELGDSG   75 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   75 (319)
                      ....+.+.|++++|++.|+...+.... +.. .+..+..++...|++++|.+.|++..+..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            455677889999999999998876432 566 88888888999999999999999988753

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.22  E-value=0.0045  Score=38.66  Aligned_cols=65  Identities=12%  Similarity=-0.025  Sum_probs=31.3

Q ss_pred             chHhHHHHHHHHhhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976            9 CTATFNIMLNGLCKNRY---TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS   74 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   74 (319)
                      |+..+..+..++...++   .++|..++++..+.... ++.....+...+.+.|++++|...|+++.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            44444444444433322   45555555555544322 4444455555555555555555555555543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.21  E-value=1.9e-06  Score=69.85  Aligned_cols=148  Identities=7%  Similarity=0.006  Sum_probs=85.1

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC   89 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   89 (319)
                      +..|..|..+..+.+++.+|++-|-+.      -|+..|..++.+..+.|.+++-.+.+...++..-  ++..=+.|+-+
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a  125 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA  125 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence            345666777777777777776654211      2556677777777778888887777766665422  44444567777


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC--------------------CCccC
Q 020976           90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD--------------------GVQLD  149 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~  149 (319)
                      |++.++..+..+++.       .|+......+..-|...|.++.|.-+|..+..-                    .-.-+
T Consensus       126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns  198 (624)
T 3lvg_A          126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS  198 (624)
T ss_dssp             HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred             HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            777777655433331       344444555555555555555554444333110                    00124


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHH
Q 020976          150 IVSYNTLINLYCKEGKLEAAYLL  172 (319)
Q Consensus       150 ~~~~~~l~~~~~~~~~~~~a~~~  172 (319)
                      +.||..+-.+|...+.+.-|.-.
T Consensus       199 ~ktWKeV~~ACvd~~EfrLAqic  221 (624)
T 3lvg_A          199 TRTWKEVCFACVDGKEFRLAQMC  221 (624)
T ss_dssp             SCSHHHHTHHHHHSCTTTTTTHH
T ss_pred             hhHHHHHHHHHhCchHHHHHHHh
Confidence            55666666666666655554433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.20  E-value=0.011  Score=36.87  Aligned_cols=67  Identities=7%  Similarity=0.029  Sum_probs=42.7

Q ss_pred             CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 020976           43 PELVTYNILIKGLCKAGR---LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG  110 (319)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  110 (319)
                      .|+..+..+..++...++   .++|..++++..+.... ++.....+...+.+.|++++|+..|+++.+..
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            455666666666654443   56777777777665332 55666666667777777777777777776653

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.15  E-value=0.023  Score=37.63  Aligned_cols=148  Identities=14%  Similarity=0.102  Sum_probs=95.6

Q ss_pred             HHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 020976          153 YNTLINL--YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL  230 (319)
Q Consensus       153 ~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  230 (319)
                      ...|+.+  +.-.|..++..++..+.....   +..-++.+|--....-+-+-..++++.+-+.   .|.          
T Consensus         8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------   71 (172)
T 1wy6_A            8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------   71 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------
Confidence            3444444  344677888888887777642   3344555555444555555555555544332   221          


Q ss_pred             HhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 020976          231 GKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQS  310 (319)
Q Consensus       231 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  310 (319)
                      ..+|++......+-.+. .+.......+..+...|+-++..+++..++. +.+|++.....+..+|.+.|+..+|.+++.
T Consensus        72 s~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~  149 (172)
T 1wy6_A           72 DKCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI  149 (172)
T ss_dssp             GGCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence            22344444444443332 2455566777888889999999999888654 457788899999999999999999999999


Q ss_pred             HHHhhhcc
Q 020976          311 KIRMAKIS  318 (319)
Q Consensus       311 ~~~~~~i~  318 (319)
                      +.=+.|+.
T Consensus       150 ~AC~kG~k  157 (172)
T 1wy6_A          150 EACKKGEK  157 (172)
T ss_dssp             HHHHTTCH
T ss_pred             HHHHhhhH
Confidence            98877763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.04  E-value=0.034  Score=49.90  Aligned_cols=102  Identities=10%  Similarity=0.047  Sum_probs=65.1

Q ss_pred             HHHHhhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976           17 LNGLCKNRYTDNALR-MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK   95 (319)
Q Consensus        17 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   95 (319)
                      .......+++++|.+ ++..+      |+......++..+.+.|.++.|.++.+.         .   ..-.......|+
T Consensus       606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~  667 (814)
T 3mkq_A          606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQ  667 (814)
T ss_dssp             HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTC
T ss_pred             HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCC
Confidence            344556788888877 54221      1122336677777788888888765521         1   111233456788


Q ss_pred             hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHH
Q 020976           96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV  142 (319)
Q Consensus        96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  142 (319)
                      +++|.++.+.+      .+...|..+...+.+.++++.|.+.|.++.
T Consensus       668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            88887775432      356678888888888888888888887764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.98  E-value=0.011  Score=37.66  Aligned_cols=65  Identities=9%  Similarity=-0.004  Sum_probs=36.6

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHG------FVPELVTYNILIKGLCKAGRLRTARWILKELGD   73 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   73 (319)
                      +...+-.+...+.+.|+++.|...|+...+.-      -.+....+..+..++.+.|+++.|...++++.+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            44445556666666666666666666654420      112345555666666666666666666666654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.98  E-value=0.0065  Score=38.85  Aligned_cols=63  Identities=11%  Similarity=-0.069  Sum_probs=48.1

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHhhccC----------CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          218 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      .+..-+..+...+...|++..|...|+.....          ...++..+..++.+.|+++.|...++++.+.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            34455667888888889999888888765432          3456778888888888888888888888775

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.95  E-value=0.01  Score=45.29  Aligned_cols=84  Identities=13%  Similarity=0.042  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHhCCCCCC---cccHHHHHHHHHHc-----CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhc-CCHH
Q 020976           97 KLGLEILSAMKRKGYTFD---GFGYCTVIAAFVKI-----GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE-GKLE  167 (319)
Q Consensus        97 ~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~  167 (319)
                      ..|...+++..+.  .|+   ...|..+...|.+.     |+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus       180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            3444444444443  222   33455555555552     56666666666655542111244455555555553 5566


Q ss_pred             HHHHHHHHHHHcCCC
Q 020976          168 AAYLLLDEMEKQGFE  182 (319)
Q Consensus       168 ~a~~~~~~~~~~~~~  182 (319)
                      ++.+.+++.....+.
T Consensus       258 ~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          258 GFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHcCCCC
Confidence            666666666554443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.90  E-value=0.011  Score=40.48  Aligned_cols=83  Identities=14%  Similarity=0.095  Sum_probs=55.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHH
Q 020976           25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG---RLRTARWILKELGDSGHAP--NAITYTTIMKCCFRNRKYKLG   99 (319)
Q Consensus        25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a   99 (319)
                      ....+.+-|.+..+.|. ++..+.-.+..++++.+   +++++..+|+++.+.. .|  +...+-.+.-++.+.+++++|
T Consensus        13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence            34455666666555544 56777777777777776   5557777777777653 23  345555666677778888888


Q ss_pred             HHHHHHHHhC
Q 020976          100 LEILSAMKRK  109 (319)
Q Consensus       100 ~~~~~~~~~~  109 (319)
                      .+.++.+.+.
T Consensus        91 ~~y~~~lL~i  100 (152)
T 1pc2_A           91 LKYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            8888777766

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.083  Score=37.10  Aligned_cols=97  Identities=11%  Similarity=0.154  Sum_probs=42.5

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHH
Q 020976           56 CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT  135 (319)
Q Consensus        56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  135 (319)
                      ...|+++.|.++.+.+      -+...|..|.......|+++-|.+.|.+..         .+..+.-.|.-.|+.+...
T Consensus        16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHHHH
T ss_pred             HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCCHHHHH
Confidence            3445555555544433      134445555555555555555555554432         1233333444444444444


Q ss_pred             HHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 020976          136 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL  173 (319)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  173 (319)
                      ++-+.....|      -++....++...|+++++.++|
T Consensus        81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL  112 (177)
T 3mkq_B           81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF  112 (177)
T ss_dssp             HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence            3333333322      1233333444455555555554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.088  Score=36.99  Aligned_cols=130  Identities=16%  Similarity=0.160  Sum_probs=87.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 020976          157 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI  236 (319)
Q Consensus       157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  236 (319)
                      .....+.|+++.|.++.+++      -+...|..+.......|+++-|+..|.....         +..+.-.|...|+.
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence            34556789999999887765      3678899999999999999999988876543         44555566778887


Q ss_pred             HHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 020976          237 DHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI  312 (319)
Q Consensus       237 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (319)
                      +...++-+.....+  -++.....+...|+++++.++|.+.   |-.|..      +-.....|-.+.|.++.+++
T Consensus        77 e~L~kla~iA~~~g--~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           77 NKLSKMQNIAQTRE--DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCc--cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence            77666655433221  3455556677789999999988653   322221      11223367777888877654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.68  E-value=0.044  Score=37.11  Aligned_cols=100  Identities=12%  Similarity=0.078  Sum_probs=49.8

Q ss_pred             chHhHHHHHHHHhhcCCh------HHHHHHHHHHHhCCCCCCHH-HHHHHHHH------HHhcCChhHHHHHHHHHhhCC
Q 020976            9 CTATFNIMLNGLCKNRYT------DNALRMFRGLQKHGFVPELV-TYNILIKG------LCKAGRLRTARWILKELGDSG   75 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~   75 (319)
                      |.++|-..+...-+.|+.      ++..++|++.... ++|+.. .|...+..      +...+++++|.++|+.+...+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            556666666666666666      6666666666554 444321 01100000      112255556666665554431


Q ss_pred             CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 020976           76 HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG  110 (319)
Q Consensus        76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  110 (319)
                      -.- ...|......-.+.|+...|.+++.+....+
T Consensus        91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            111 4444444444555555666666665555544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.65  E-value=0.027  Score=38.47  Aligned_cols=65  Identities=9%  Similarity=0.016  Sum_probs=26.7

Q ss_pred             CCcccHHHHHHHHHHcC---chHHHHHHHHHHHhCCCcc--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          113 FDGFGYCTVIAAFVKIG---RLKEATDYMEQMVTDGVQL--DIVSYNTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       113 ~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      ++..+.-.+..++++++   +.++++.+|++..+.. .|  ....+..+.-++.+.|++++|.+.++.+.+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            33344444444444444   3334444444444432 11  122233333344444444444444444444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.38  E-value=0.12  Score=35.01  Aligned_cols=102  Identities=12%  Similarity=0.107  Sum_probs=48.8

Q ss_pred             ChhhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCcc-cHHHHHHH------HHHcCchHHHHHHHHHHHhCC
Q 020976           79 NAITYTTIMKCCFRNRKY------KLGLEILSAMKRKGYTFDGF-GYCTVIAA------FVKIGRLKEATDYMEQMVTDG  145 (319)
Q Consensus        79 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~  145 (319)
                      |..+|-..+...-+.|+.      ++..++|++.... ++|+.. .|...+..      +...+|.++|.++|+.+....
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            444555555555545555      5555555555543 243321 11111111      112356666666666665432


Q ss_pred             CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 020976          146 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE  182 (319)
Q Consensus       146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  182 (319)
                      -.. ...|....+.-.+.|+...|.+++......+.+
T Consensus        91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            122 344444444455566666666666666665544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.33  E-value=0.057  Score=41.31  Aligned_cols=92  Identities=18%  Similarity=0.197  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHHhCCCccC---hhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhcc-CCh
Q 020976          131 LKEATDYMEQMVTDGVQLD---IVSYNTLINLYCK-----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA-GNI  201 (319)
Q Consensus       131 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~  201 (319)
                      ...|...+++..+.  .|+   ...|..+...|.+     -|+.++|.+.|++..+.++.-+..++......++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            45677777877774  344   5678888888888     499999999999999875543466777788888874 899


Q ss_pred             hHHHHHHHHHHhcCCC--CChhhHH
Q 020976          202 KGARLHLEYMNKIGFD--SNLEAYN  224 (319)
Q Consensus       202 ~~a~~~~~~~~~~~~~--~~~~~~~  224 (319)
                      +++.+.+++.......  |+....+
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHH
Confidence            9999999999887544  5444333

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.07  E-value=0.048  Score=35.86  Aligned_cols=84  Identities=13%  Similarity=0.037  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHH
Q 020976           25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT---ARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGL  100 (319)
Q Consensus        25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~  100 (319)
                      .+..+.+-|......|. |+..+--.+..++++.++...   ++.+++.+...+.+ -.....-.+.-++.+.|++++|.
T Consensus        16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            34444444444444333 455554455555555554443   55555555554210 12333334444555666666666


Q ss_pred             HHHHHHHhC
Q 020976          101 EILSAMKRK  109 (319)
Q Consensus       101 ~~~~~~~~~  109 (319)
                      +.++.+.+.
T Consensus        95 ~~~~~lL~~  103 (126)
T 1nzn_A           95 KYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666665554

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.84  E-value=2.1e-05  Score=63.94  Aligned_cols=242  Identities=12%  Similarity=0.077  Sum_probs=163.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      .+..|..|..+....+.+.+|++-|-+.      -|+..|..++.+..+.|.+++-.+++....+.  ..++..=+.|+-
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~  124 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF  124 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence            4567888999988888888887655322      26778899999999999999999988777665  345556678999


Q ss_pred             HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------CCCC
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--------------------GFEC  183 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~  183 (319)
                      +|++.++..+..+++.       .|+..-...+..-|...|.++.|.-+|..+...                    .-.-
T Consensus       125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn  197 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN  197 (624)
T ss_dssp             HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred             HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999998766544332       355555666677777777777776666543211                    1123


Q ss_pred             cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHH
Q 020976          184 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN  260 (319)
Q Consensus       184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~  260 (319)
                      +..||..+-.+|...+.+.-|...--.++-     ...-...++..|...|.+++.+.+++.-...   ....|+.|.-.
T Consensus       198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL  272 (624)
T 3lvg_A          198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL  272 (624)
T ss_dssp             SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            667898888999999888877655444442     2233455777888999999999988876533   66788888888


Q ss_pred             HHccCChhHHHHHHHHHHHc-CCc------cCHHHHHHHHHHHHhcCCHHHHH
Q 020976          261 LCKAKRLPSASKLLLSCLKS-GVR------ILKSAQKAVVDGLRHSGCRREAK  306 (319)
Q Consensus       261 ~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a~  306 (319)
                      |++- ++++..+.++....+ +++      -....|.-++-.|.+-.++|.|.
T Consensus       273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            8765 566666665543322 111      02234556666666666666553

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.54  E-value=0.13  Score=33.81  Aligned_cols=21  Identities=10%  Similarity=-0.042  Sum_probs=9.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 020976          158 NLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      -++.+.|++++|.+.++.+.+
T Consensus        82 vg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           82 VGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHH
Confidence            334444444444444444443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.085  Score=46.45  Aligned_cols=126  Identities=16%  Similarity=0.116  Sum_probs=80.9

Q ss_pred             HHHHHHHhhcCC-hHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCC-hhHHHHHHHHHhhC------CCCC-Ch--
Q 020976           14 NIMLNGLCKNRY-TDNALRMFRGLQKHGFVPELVTY--NILIKGLCKAGR-LRTARWILKELGDS------GHAP-NA--   80 (319)
Q Consensus        14 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~--   80 (319)
                      ..++..+...++ .+.|+.+|+++....  |...++  ..++..+...++ --+|.+++.+..+.      ..++ +.  
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            445555666666 588999999998763  333332  233333323222 22455555444321      1111 11  


Q ss_pred             --------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHH
Q 020976           81 --------ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV  142 (319)
Q Consensus        81 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  142 (319)
                              ...+.-...+...|+++-|+++-++..... |.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                    122223455677899999999999998774 5567899999999999999999999988773

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.51  E-value=0.3  Score=32.47  Aligned_cols=149  Identities=15%  Similarity=0.142  Sum_probs=92.0

Q ss_pred             hHHHHHHH--HhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976           12 TFNIMLNG--LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC   89 (319)
Q Consensus        12 ~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   89 (319)
                      +...||.+  ..-.|..++..++..+....   .+..-||.++--....-+-+-..++++..-..   .|..        
T Consensus         7 l~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis--------   72 (172)
T 1wy6_A            7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD--------   72 (172)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG--------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH--------
Confidence            34445544  44467777777777776653   25556666666666666666666666655431   1211        


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHH
Q 020976           90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAA  169 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  169 (319)
                        ..|+.......+-.+     ..+....+..+..+...|..++..+++..+... .+|++...-.+..+|.+.|+..++
T Consensus        73 --~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a  144 (172)
T 1wy6_A           73 --KCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDA  144 (172)
T ss_dssp             --GCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             --hhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhH
Confidence              233333333333322     124455666677777888888888888875443 466777777888888888888888


Q ss_pred             HHHHHHHHHcCCC
Q 020976          170 YLLLDEMEKQGFE  182 (319)
Q Consensus       170 ~~~~~~~~~~~~~  182 (319)
                      .+++.+.-+.|++
T Consensus       145 ~eLl~~AC~kG~k  157 (172)
T 1wy6_A          145 TTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhhhH
Confidence            8888888877764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.23  E-value=1.1  Score=37.10  Aligned_cols=92  Identities=13%  Similarity=0.099  Sum_probs=39.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHHcCchHHHHHHHHHHHh----CCCccC--hhhH
Q 020976           85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFD-----GFGYCTVIAAFVKIGRLKEATDYMEQMVT----DGVQLD--IVSY  153 (319)
Q Consensus        85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~  153 (319)
                      .|...+...|++.+|.+++..+...-...+     ...+...++.|...+++..|..++.++..    ...+|+  ...+
T Consensus       142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~  221 (445)
T 4b4t_P          142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY  221 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence            344445555555555555555542211111     12333344455555555555555554421    111111  1223


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHH
Q 020976          154 NTLINLYCKEGKLEAAYLLLDEM  176 (319)
Q Consensus       154 ~~l~~~~~~~~~~~~a~~~~~~~  176 (319)
                      ...+..+...+++.+|...|.++
T Consensus       222 ~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          222 NLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHH
Confidence            34444444555555555555444

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.13  E-value=1.2  Score=40.37  Aligned_cols=50  Identities=14%  Similarity=-0.031  Sum_probs=23.3

Q ss_pred             ccCChhHHHHHHHHHHhcCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          197 KAGNIKGARLHLEYMNKIGFDSNLEAY--NCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      ..|+.+.+..+.+.+.... .|....-  ..+.-+|+..|+.....+++..+.
T Consensus       536 ~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~  587 (963)
T 4ady_A          536 NYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV  587 (963)
T ss_dssp             TTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence            4556666666655555421 1222111  122334555566555555555544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.86  E-value=1.4  Score=36.44  Aligned_cols=186  Identities=12%  Similarity=0.052  Sum_probs=83.8

Q ss_pred             CChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH----hcC
Q 020976           24 RYTDNALRMFRGLQKH-----GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF----RNR   94 (319)
Q Consensus        24 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~   94 (319)
                      |+++.|++.+-.+.+.     +..........++..|...|+++...+.+..+....-. .......+++.+.    ...
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence            5677777666555431     22234556677777777777777776666655442211 1222223332221    122


Q ss_pred             ChhHHHHHHHHHHh--CCCCCCc--------ccHHHHHHHHHHcCchHHHHHHHHHHHhC--CCccC---hhhHHHHHHH
Q 020976           95 KYKLGLEILSAMKR--KGYTFDG--------FGYCTVIAAFVKIGRLKEATDYMEQMVTD--GVQLD---IVSYNTLINL  159 (319)
Q Consensus        95 ~~~~a~~~~~~~~~--~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~  159 (319)
                      ..+...+  ..+..  ..+....        .....|...+...|++.+|..++.++...  |..+.   ...+...++.
T Consensus       109 ~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl  186 (445)
T 4b4t_P          109 SLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL  186 (445)
T ss_dssp             TTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             chhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            2111111  11111  0111111        01133455555666666666666665432  11111   2234445555


Q ss_pred             HHhcCCHHHHHHHHHHHHH----cCCCCc--HHhHHHHHHHHhccCChhHHHHHHHHHH
Q 020976          160 YCKEGKLEAAYLLLDEMEK----QGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMN  212 (319)
Q Consensus       160 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~  212 (319)
                      |...+++..|..++.++..    ....|+  ...+...+..+...+++.+|...|.++.
T Consensus       187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            6666666666666655431    111111  1233444444555555655555554443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.79  E-value=0.37  Score=42.56  Aligned_cols=55  Identities=15%  Similarity=0.088  Sum_probs=39.0

Q ss_pred             HHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          192 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      ...|...|+++-|..+-++....- +.+-.+|..|..+|...|+++.|+-.+..++
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            344556777888887777777653 4445777888888888888888877777664

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.67  E-value=2.5  Score=38.41  Aligned_cols=270  Identities=11%  Similarity=-0.041  Sum_probs=139.9

Q ss_pred             HhhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-------CCChhhHHHHHHHH
Q 020976           20 LCKNRYTDNALRMFRGLQKHG--FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH-------APNAITYTTIMKCC   90 (319)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~   90 (319)
                      ....|+.++++.+++.....+  -.+....=..+.-+.+..|..+++..++.......-       .+....-..+.-+.
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            445677777777766544321  111222333344455566666677777766554211       01111122333333


Q ss_pred             HhcCC-hhHHHHHHHHHHhCCCCCCcccHH--HHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976           91 FRNRK-YKLGLEILSAMKRKGYTFDGFGYC--TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE  167 (319)
Q Consensus        91 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  167 (319)
                      +-.|. -+++.+.+..+.... .+......  .+...+.-.|+.+....++..+.+.. ..+..-+..+.-++...|+.+
T Consensus       464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e  541 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE  541 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred             HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence            33343 245566666555432 11111112  22333445677777777777776642 112222233333445788999


Q ss_pred             HHHHHHHHHHHcCCCCcHHhH--HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976          168 AAYLLLDEMEKQGFECDKYTH--TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES  245 (319)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  245 (319)
                      .+..+++.+... ..|....-  ..+.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.+++..
T Consensus       542 ~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~  619 (963)
T 4ady_A          542 LADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL  619 (963)
T ss_dssp             GGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred             HHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence            998888888764 22222222  234556788899888888999888642 22333333333344456776667777765


Q ss_pred             hccC-CchhHHH--HHHHHHccCCh-hHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 020976          246 MEVK-DSFTYSS--MVHNLCKAKRL-PSASKLLLSCLKSGVRILKSAQKAVVDGL  296 (319)
Q Consensus       246 ~~~~-~~~~~~~--l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  296 (319)
                      +... ++.+-..  +.-+....|.. .++..++..+..   .+|..+-...+.++
T Consensus       620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL  671 (963)
T 4ady_A          620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL  671 (963)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence            5433 4444333  33333444443 578888888864   23444443333333

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.47  E-value=0.74  Score=31.83  Aligned_cols=129  Identities=6%  Similarity=-0.041  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHhC-CCccCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC-cHHh
Q 020976          118 YCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDI-------VSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FEC-DKYT  187 (319)
Q Consensus       118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~  187 (319)
                      +-.-+..+...+.++.|+-+.+.+... +..|+.       .++..+..++...+++..|...|++.++.. .-+ +..+
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            334455666677777777666665442 112221       134556667777777777777777754321 111 1111


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--CchhHHHHHH
Q 020976          188 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVH  259 (319)
Q Consensus       188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~  259 (319)
                      ...+.    .......         ......+.+.--.+..||.+.+++++|+.+++.++..  ++.+-..|.+
T Consensus       103 ~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~Lak  163 (167)
T 3ffl_A          103 RPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLAN  163 (167)
T ss_dssp             ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHH
T ss_pred             ccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHH
Confidence            11110    0000000         0011233445555777888888888888888887644  5554444443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.43  E-value=0.28  Score=39.76  Aligned_cols=77  Identities=13%  Similarity=0.090  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcHHhHHHHH
Q 020976          118 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-----QGFECDKYTHTILI  192 (319)
Q Consensus       118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~  192 (319)
                      ...++..+...|+++++...+..+... -+.+...+..++.++.+.|+..+|++.|+.+.+     .|+.|+..+-...-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~  252 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE  252 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            455677778889999998888888765 355778889999999999999999998887653     58888877654443


Q ss_pred             HHH
Q 020976          193 DGL  195 (319)
Q Consensus       193 ~~~  195 (319)
                      ...
T Consensus       253 ~il  255 (388)
T 2ff4_A          253 RIL  255 (388)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.42  E-value=0.25  Score=40.05  Aligned_cols=73  Identities=11%  Similarity=0.015  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCcccHH
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR-----KGYTFDGFGYC  119 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  119 (319)
                      .+...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+     .|+.|++.+-.
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            355667788888999999998888887653 34777899999999999999999999888754     48888876543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.41  E-value=3.4  Score=38.89  Aligned_cols=83  Identities=18%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             cHHHHHHHHHHcCchHHHHHHHHHHHhCCCccC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHH
Q 020976          117 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD----IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI  192 (319)
Q Consensus       117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  192 (319)
                      -|..++..+.+.+.++.+.++-....+...+.+    ...|..+.+++...|++++|...+..+.....+  ......++
T Consensus       901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV  978 (1139)
T 4fhn_B          901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV  978 (1139)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence            456666666666777766666655544311111    124666677777777777777777666544322  33455555


Q ss_pred             HHHhccCCh
Q 020976          193 DGLCKAGNI  201 (319)
Q Consensus       193 ~~~~~~~~~  201 (319)
                      ...|..|..
T Consensus       979 ~~lce~~~~  987 (1139)
T 4fhn_B          979 NQLTKQGKI  987 (1139)
T ss_dssp             HHHHHHCCH
T ss_pred             HHHHhCCCh
Confidence            555555443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.69  E-value=4.7  Score=37.95  Aligned_cols=187  Identities=14%  Similarity=0.124  Sum_probs=114.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCc-----------------
Q 020976           85 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-----------------  147 (319)
Q Consensus        85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------  147 (319)
                      .++..+...+..+.+.++....     +.++...-.+..++...|++++|..+|.+.... +.                 
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccc
Confidence            3444555566666555443322     233333345566788899999999999765321 10                 


Q ss_pred             ------cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----HhHHHHHHHHhccCChhHHHHHHHHHHhcCCC
Q 020976          148 ------LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK----YTHTILIDGLCKAGNIKGARLHLEYMNKIGFD  217 (319)
Q Consensus       148 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  217 (319)
                            .-..-|..++..+.+.+.++.+.++-....+....-+.    ..|..+.+.+...|++++|...+-.+....  
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--  968 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--  968 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--
Confidence                  01123677888888999999999888777654322121    257888899999999999999888776543  


Q ss_pred             CChhhHHHHHHHHHhcCCHHHH------------HHHHHhh-c-----cCCchhHHHHHHHHHccCChhHHHHH-HHHHH
Q 020976          218 SNLEAYNCIVDRLGKDGKIDHA------------INVFESM-E-----VKDSFTYSSMVHNLCKAKRLPSASKL-LLSCL  278 (319)
Q Consensus       218 ~~~~~~~~l~~~~~~~~~~~~a------------~~~~~~~-~-----~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~  278 (319)
                      .-...+..++...+..|..+.-            .+++..- .     ...+.-|..|=..+...|++.+|..+ |+.+.
T Consensus       969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B          969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp             SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence            2345677777777766655443            3333211 1     11223355555556677887666554 55544


Q ss_pred             H
Q 020976          279 K  279 (319)
Q Consensus       279 ~  279 (319)
                      +
T Consensus      1049 R 1049 (1139)
T 4fhn_B         1049 R 1049 (1139)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=93.64  E-value=0.76  Score=28.66  Aligned_cols=47  Identities=19%  Similarity=0.281  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           63 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      +..+-++.+....+.|++......+++|-+.+++..|.++++.++.+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34444455554455555555555555555555555555555555433

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=93.46  E-value=0.82  Score=28.51  Aligned_cols=63  Identities=16%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976           25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus        25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++..- .+...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            556778888888888899999999999999999999999999999998642 333456766654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.09  E-value=0.72  Score=31.91  Aligned_cols=69  Identities=13%  Similarity=-0.019  Sum_probs=38.9

Q ss_pred             CCCCcchHh--HHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 020976            4 GDLTPCTAT--FNIMLNGLCKNRYTDNALRMFRGLQKH-GFVPE-------LVTYNILIKGLCKAGRLRTARWILKELG   72 (319)
Q Consensus         4 ~g~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~   72 (319)
                      .|+-|--..  +-.-+..+...|.++.|+-+.+.+... +..|+       ..++..+..++...|++.+|...|++..
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            344453333  444566677778888888777765432 11222       1255667777778888888888888754

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=92.13  E-value=1.7  Score=28.78  Aligned_cols=59  Identities=20%  Similarity=0.206  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976           63 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI  122 (319)
Q Consensus        63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  122 (319)
                      +..+-++.+....+.|++......+++|-+.+|+..|.++++-++.+. .+...+|..++
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l  129 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI  129 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence            444455555555555666666666666666666666666666555442 22233454444

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=92.02  E-value=1.8  Score=28.71  Aligned_cols=63  Identities=16%  Similarity=0.199  Sum_probs=49.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976           25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus        25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +.-+..+-++.+...++.|++....+.+++|.+.+|+..|.++|+-++.. ..+...+|..+++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence            33455666667777788899999999999999999999999999999864 2334556776654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.85  E-value=1.9  Score=28.59  Aligned_cols=67  Identities=12%  Similarity=0.151  Sum_probs=33.9

Q ss_pred             CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           43 PELVTYNILIKGLCKAGR---LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      |+..+--.+..++++..+   ..+++.+++++.+.+..-....+-.+.-++.+.|+++.|.+..+.+.+.
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            444444444445555443   2345555555555432112344444555566666666666666666554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.63  E-value=2  Score=28.46  Aligned_cols=68  Identities=12%  Similarity=0.171  Sum_probs=33.2

Q ss_pred             CCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976           77 APNAITYTTIMKCCFRNRK---YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus        77 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  144 (319)
                      .|+..+--.+..++++..+   ..+++.+++.+.+.+..-....+-.|.-++.+.|+++.|.+..+.+.+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3455554455555555443   3345555555554431112233334444555566666666666655553

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.93  E-value=3.4  Score=33.98  Aligned_cols=61  Identities=16%  Similarity=0.021  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDS--GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK  107 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  107 (319)
                      +...+...|.+.|+++.|.+.|.++...  +..--...+-..++.+...+++..+...+.++.
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~  195 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN  195 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3445555555666666666666655542  112223445555555555566666555555543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.84  E-value=3.4  Score=33.98  Aligned_cols=97  Identities=8%  Similarity=-0.062  Sum_probs=67.0

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCChhhHHHH--
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKH--GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG-HAPNAITYTTI--   86 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l--   86 (319)
                      ++..+...|.+.|+++.|.+.|.++...  +...-...+-..++.+...+++..+...+++....- -.++....+.+  
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            4567889999999999999999999874  333446788889999999999999999999886421 11222222211  


Q ss_pred             --HHHHHhcCChhHHHHHHHHHHh
Q 020976           87 --MKCCFRNRKYKLGLEILSAMKR  108 (319)
Q Consensus        87 --~~~~~~~~~~~~a~~~~~~~~~  108 (319)
                        ...+...+++..|.+.|-+...
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence              1123345677777777665543

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=90.78  E-value=3.8  Score=32.59  Aligned_cols=72  Identities=18%  Similarity=0.221  Sum_probs=38.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhhccCC---chhHHHHHHHHHccCC--hhHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 020976          224 NCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKR--LPSASKLLLSCLKSGVRILKSAQKAVVDG  295 (319)
Q Consensus       224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  295 (319)
                      ..++.-|...|+.++|.+.++++..+.   ..+...+..++-+.++  .+....++..+...|+-+.......+.+.
T Consensus       221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v  297 (358)
T 3eiq_C          221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI  297 (358)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            456666667777777777777776552   1223333334433322  24456666666666655444443333333

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=90.73  E-value=1.8  Score=26.93  Aligned_cols=80  Identities=11%  Similarity=0.001  Sum_probs=54.4

Q ss_pred             CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976          199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL  278 (319)
Q Consensus       199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  278 (319)
                      ...++|..+-+-+...+.  ...+-..-+..+.+.|++++|..+.+....||...|.++-.  .+.|-.+++...+.++.
T Consensus        21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la   96 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA   96 (116)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence            356788888777776542  22222233445678899999999998888888888876644  45677777777776766


Q ss_pred             HcCC
Q 020976          279 KSGV  282 (319)
Q Consensus       279 ~~~~  282 (319)
                      ..|-
T Consensus        97 ~sg~  100 (116)
T 2p58_C           97 RSQD  100 (116)
T ss_dssp             TCCC
T ss_pred             hCCC
Confidence            6543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=90.48  E-value=2.1  Score=26.62  Aligned_cols=79  Identities=15%  Similarity=0.071  Sum_probs=46.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 020976           24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL  103 (319)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  103 (319)
                      .+.++|..+-+.+...+.  ....--+-+..+...|++++|..+.+.+.    .||...|..|.  -.+.|..+++...+
T Consensus        20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL   91 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRL   91 (115)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence            356777777776666532  11111222334566777777776654443    56777666653  34666666666666


Q ss_pred             HHHHhCC
Q 020976          104 SAMKRKG  110 (319)
Q Consensus       104 ~~~~~~~  110 (319)
                      ..+...|
T Consensus        92 ~~la~sg   98 (115)
T 2uwj_G           92 AGLGGSS   98 (115)
T ss_dssp             HHHHTCS
T ss_pred             HHHHhCC
Confidence            6666665

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=90.27  E-value=2.2  Score=26.56  Aligned_cols=79  Identities=18%  Similarity=0.117  Sum_probs=45.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 020976           24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL  103 (319)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  103 (319)
                      .+.++|..+-+.+...+.  ....--+-+..+...|++++|..+.+.+.    .||...|..|.  -.+.|..+++...+
T Consensus        21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL   92 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRL   92 (116)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence            356677777666665532  11111222334556777777776665543    56776666653  34566666666666


Q ss_pred             HHHHhCC
Q 020976          104 SAMKRKG  110 (319)
Q Consensus       104 ~~~~~~~  110 (319)
                      ..+...|
T Consensus        93 ~~la~sg   99 (116)
T 2p58_C           93 NRLARSQ   99 (116)
T ss_dssp             HHHTTCC
T ss_pred             HHHHhCC
Confidence            6666655

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=89.76  E-value=1.7  Score=26.98  Aligned_cols=80  Identities=11%  Similarity=0.040  Sum_probs=54.0

Q ss_pred             CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976          199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL  278 (319)
Q Consensus       199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  278 (319)
                      ...++|..+-+-+...+.  ...+-..-+..+.+.|++++|..+.+....||...|.++-.  .+.|-.+++...+.++.
T Consensus        20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la   95 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG   95 (115)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence            356778877777776542  22222223445678899999998888888778888776643  46677777777776776


Q ss_pred             HcCC
Q 020976          279 KSGV  282 (319)
Q Consensus       279 ~~~~  282 (319)
                      ..|-
T Consensus        96 ~sg~   99 (115)
T 2uwj_G           96 GSSD   99 (115)
T ss_dssp             TCSS
T ss_pred             hCCC
Confidence            6543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.32  E-value=7.6  Score=31.43  Aligned_cols=167  Identities=9%  Similarity=-0.035  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCC---ChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccH-
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDS-GHAP---NAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGY-  118 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-  118 (319)
                      ......|...|.+.|+.++..+++.....- +.-|   .......++..+.... ..+.-.++..+..+.. .-+..+| 
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl   97 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            456778999999999999999998887541 1111   2344566777776643 3444444444444321 1122333 


Q ss_pred             -----HHHHHHHHHcCchHHHHHHHHHHHhC--CCccC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcHH
Q 020976          119 -----CTVIAAFVKIGRLKEATDYMEQMVTD--GVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GFECDKY  186 (319)
Q Consensus       119 -----~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~  186 (319)
                           ..++..|...|++.+|.+++.++...  .....   ...+-.-++.|...+++.++...+......  .+.+++.
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~  177 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK  177 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence                 15677888889999998888887763  11111   233555667788888888888888777532  2223333


Q ss_pred             hHH----HHHHHHh-ccCChhHHHHHHHHHH
Q 020976          187 THT----ILIDGLC-KAGNIKGARLHLEYMN  212 (319)
Q Consensus       187 ~~~----~l~~~~~-~~~~~~~a~~~~~~~~  212 (319)
                      ...    .-...+. ..+++..|...|-+..
T Consensus       178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          178 VQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            221    1222344 6788888877776654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=88.94  E-value=6  Score=29.77  Aligned_cols=209  Identities=15%  Similarity=0.100  Sum_probs=100.0

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh---hHHHHHH
Q 020976           15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELV---TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI---TYTTIMK   88 (319)
Q Consensus        15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~   88 (319)
                      ..+...++.|+.+....+    .+.|..++..   .-.+.+...+..|+.+-+.    .+.+.|..++..   -.+ .+.
T Consensus         7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t-~L~   77 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVE----LLLRHGADPVLRKKNGAT-PFL   77 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCC-HHH
T ss_pred             hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCC-HHH
Confidence            455667778887655544    4445443322   1123444555677765444    444455544422   222 233


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCccc--HHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhh------------HH
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFG--YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS------------YN  154 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~  154 (319)
                      ..+..|+.+    +++.+.+.|..++...  -.+.+...+..|+.+-+.    .+.+.|..++...            -.
T Consensus        78 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~~~~~~~~~~~g~  149 (285)
T 1wdy_A           78 LAAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK----FLYKRGANVNLRRKTKEDQERLRKGGA  149 (285)
T ss_dssp             HHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHH----HHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred             HHHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHH----HHHHhCCCcccccccHHHHHhhccCCC
Confidence            344556654    4445555554444221  112344555667655443    4444443333210            01


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhh--HHHHHHH
Q 020976          155 TLINLYCKEGKLEAAYLLLDEMEKQGFECD---KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA--YNCIVDR  229 (319)
Q Consensus       155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~  229 (319)
                      ..+...+..|+.+-+..+++.   .|..++   ....+.+. ..+..+.......+.+.+.+.|..++...  -...+..
T Consensus       150 t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~  225 (285)
T 1wdy_A          150 TALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL  225 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            233344456665544443332   133332   22222232 23345665556677777777776554321  1233445


Q ss_pred             HHhcCCHHHHHHHHH
Q 020976          230 LGKDGKIDHAINVFE  244 (319)
Q Consensus       230 ~~~~~~~~~a~~~~~  244 (319)
                      .+..|+.+-+..+++
T Consensus       226 A~~~~~~~~v~~Ll~  240 (285)
T 1wdy_A          226 AVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HHHTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHh
Confidence            566788877777776

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=88.67  E-value=4  Score=27.41  Aligned_cols=68  Identities=12%  Similarity=0.149  Sum_probs=38.9

Q ss_pred             CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           42 VPELVTYNILIKGLCKAGR---LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        42 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      .|+..+--.+..++++..+   ..+++.+++++...+..-.....-.+.-++.+.|++++|.++.+.+.+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            3555555555556666554   3456666666665432223444445555666777777777777666665

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=87.08  E-value=2.7  Score=31.73  Aligned_cols=56  Identities=16%  Similarity=0.077  Sum_probs=42.9

Q ss_pred             HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976           18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS   74 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   74 (319)
                      ....+.|++++|++....-.+..+. |...-..++..+|-.|++++|.+-++...+.
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            4567788888888888777766443 7777777888888888888888888777664

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.81  E-value=2.4  Score=32.06  Aligned_cols=52  Identities=23%  Similarity=0.347  Sum_probs=25.2

Q ss_pred             HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      .+.|++++++.....-++.. |.|...-..+++.+|-.|+++.|.+-++...+
T Consensus         8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~   59 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK   59 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34455555555544444432 33444444555555555555555555554444

>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A

Probab=83.88  E-value=13  Score=28.80  Aligned_cols=74  Identities=16%  Similarity=0.206  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCC--hhHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 020976          223 YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKR--LPSASKLLLSCLKSGVRILKSAQKAVVDGL  296 (319)
Q Consensus       223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  296 (319)
                      ...++.-|...|+.++|.+.++++..|   ...+...+..++-+.++  .+....++..+.+.|+-+.......+.+.+
T Consensus       169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl  247 (307)
T 2zu6_B          169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY  247 (307)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            356788888999999999999999876   22333444444444333  355667888888777665554444443333

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=83.25  E-value=16  Score=29.13  Aligned_cols=24  Identities=17%  Similarity=0.302  Sum_probs=16.0

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHH
Q 020976           14 NIMLNGLCKNRYTDNALRMFRGLQ   37 (319)
Q Consensus        14 ~~l~~~~~~~~~~~~a~~~~~~~~   37 (319)
                      ..++.-|...++.++|...++++.
T Consensus        58 ~~ii~EYf~~~d~~Ea~~~l~eL~   81 (358)
T 3eiq_C           58 TPIIQEYFEHGDTNEVAEMLRDLN   81 (358)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHhC
Confidence            455666667777777777766654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=82.65  E-value=15  Score=28.56  Aligned_cols=130  Identities=14%  Similarity=0.087  Sum_probs=67.6

Q ss_pred             HHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCcHHhHHHHHHHH
Q 020976          120 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL----LLDEMEKQGFECDKYTHTILIDGL  195 (319)
Q Consensus       120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~  195 (319)
                      ++..-|.+.+++++|++++..-.               ..+.+.|+...|.+    +++...+.+.+++......++..+
T Consensus        38 tl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~  102 (312)
T 2wpv_A           38 TIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI  102 (312)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            33444555666666666554322               12233344443333    334444556666666666666665


Q ss_pred             hccCChh-HHHHHHHHHH----hcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCchhHHHHHHHHHcc
Q 020976          196 CKAGNIK-GARLHLEYMN----KIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKA  264 (319)
Q Consensus       196 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~  264 (319)
                      ......+ .-.++++.+.    +.|  ...++.....+...|.+.|++.+|...|-.-...++..+..++.-+...
T Consensus       103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~  178 (312)
T 2wpv_A          103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ  178 (312)
T ss_dssp             TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence            4432111 1223333332    222  1235567777888888888888888877633323555665555555443

>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A

Probab=82.27  E-value=8.5  Score=26.24  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=16.2

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHH
Q 020976          188 HTILIDGLCKAGNIKGARLHLEYMN  212 (319)
Q Consensus       188 ~~~l~~~~~~~~~~~~a~~~~~~~~  212 (319)
                      ...++.-|...|+.++|...++++.
T Consensus        12 i~~lL~EY~~~~D~~EA~~cl~EL~   36 (152)
T 2ion_A           12 IDMLLKEYLLSGDISEAEHCLKELE   36 (152)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence            4556666666677777776666654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=82.26  E-value=16  Score=28.67  Aligned_cols=190  Identities=14%  Similarity=0.039  Sum_probs=104.4

Q ss_pred             ChhHHHHHHHHHHhCCCC----CCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHH
Q 020976           95 KYKLGLEILSAMKRKGYT----FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY  170 (319)
Q Consensus        95 ~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  170 (319)
                      .+++.++-++.-.+.|--    --...|.++..-|.+.+++++|++++..-               ...+.+.|+...+.
T Consensus        11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~   75 (336)
T 3lpz_A           11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGG   75 (336)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHH
Confidence            344444444444444410    01134455556666667777766665432               23455667776655


Q ss_pred             HHH----HHHHHcCCCCcHHhHHHHHHHHhccCChh-HHHHHHHHHH----hcC--CCCChhhHHHHHHHHHhcCCHHHH
Q 020976          171 LLL----DEMEKQGFECDKYTHTILIDGLCKAGNIK-GARLHLEYMN----KIG--FDSNLEAYNCIVDRLGKDGKIDHA  239 (319)
Q Consensus       171 ~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a  239 (319)
                      ++-    +-..+.++++|......++..+.....-+ .-..+.+.++    +.|  ...++.....+...|.+.+++.+|
T Consensus        76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A  155 (336)
T 3lpz_A           76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA  155 (336)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence            554    55556788889888888888877665322 1222333332    222  234556677788888888999888


Q ss_pred             HHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          240 INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      ...|-.-..+.+..+..++..+...+...+              ++...-. .+--|.-.++...|..+++...+
T Consensus       156 e~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaR-aVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          156 EKHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCAR-AVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             HHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence            888742121123566555544444332111              1222222 23345567788888777666543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=81.69  E-value=14  Score=27.60  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=56.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc--HHHHHHH
Q 020976           50 ILIKGLCKAGRLRTARWILKELGDSGHAPNAI---TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG--YCTVIAA  124 (319)
Q Consensus        50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~  124 (319)
                      ..+...++.|+.+....++    +.|..++..   .-...+...+..|+.+    +++.+.+.|..++...  -.+.+..
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~   78 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence            3455567788877665555    444444322   1123444455667654    4445555565444321  1233445


Q ss_pred             HHHcCchHHHHHHHHHHHhCCCccCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 020976          125 FVKIGRLKEATDYMEQMVTDGVQLDI---VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD  184 (319)
Q Consensus       125 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  184 (319)
                      .+..|+.+-+    +.+.+.|..++.   ..++. +...+..|+.+    +++.+.+.|..++
T Consensus        79 A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~  132 (285)
T 1wdy_A           79 AAIAGSVKLL----KLFLSKGADVNECDFYGFTA-FMEAAVYGKVK----ALKFLYKRGANVN  132 (285)
T ss_dssp             HHHHTCHHHH----HHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred             HHHcCCHHHH----HHHHHcCCCCCccCcccCCH-HHHHHHhCCHH----HHHHHHHhCCCcc
Confidence            5556665544    444445544332   12222 33344556654    3444455555443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=81.61  E-value=26  Score=30.44  Aligned_cols=111  Identities=10%  Similarity=-0.038  Sum_probs=58.8

Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHh----HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 020976          165 KLEAAYLLLDEMEKQGFECDKYT----HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI  240 (319)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  240 (319)
                      +.+.|...+....+.... +...    ...+.......+...++...+......  .++.......+....+.|+++.|.
T Consensus       229 d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~  305 (618)
T 1qsa_A          229 DAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN  305 (618)
T ss_dssp             CHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence            567777777776543221 2222    222222333334234444455544332  233333444555555678888888


Q ss_pred             HHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976          241 NVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL  278 (319)
Q Consensus       241 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  278 (319)
                      ..|..+...   .....--+..++...|+.++|..+|+.+.
T Consensus       306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            888777654   22223334556666777777777776654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=81.35  E-value=7.5  Score=28.31  Aligned_cols=16  Identities=6%  Similarity=-0.024  Sum_probs=7.3

Q ss_pred             HhcCCHHHHHHHHHHH
Q 020976          297 RHSGCRREAKKIQSKI  312 (319)
Q Consensus       297 ~~~g~~~~a~~~~~~~  312 (319)
                      .+.|+.+-+..+++.-
T Consensus       218 ~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          218 KQRKNVWMINHLQEAR  233 (240)
T ss_dssp             HHTTCHHHHHHHHHHC
T ss_pred             HHcCcHHHHHHHHHhh
Confidence            4445554444444433

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=81.21  E-value=9.4  Score=25.15  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=13.3

Q ss_pred             HHHHHHHhccCChhHHHHHHHHHH
Q 020976          189 TILIDGLCKAGNIKGARLHLEYMN  212 (319)
Q Consensus       189 ~~l~~~~~~~~~~~~a~~~~~~~~  212 (319)
                      ..++.-|...|+.++|...++++.
T Consensus        11 ~~ll~EY~~~~D~~Ea~~cl~eL~   34 (129)
T 2nsz_A           11 DMLLKEYLLSGDISEAEHCLKELE   34 (129)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhC
Confidence            445555555566666655555543

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=80.50  E-value=14  Score=26.59  Aligned_cols=57  Identities=14%  Similarity=0.174  Sum_probs=39.0

Q ss_pred             CchHHHHHHHHHHHhCCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 020976          129 GRLKEATDYMEQMVTDGVQLD-IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK  185 (319)
Q Consensus       129 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  185 (319)
                      +...++..+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus        93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~  150 (202)
T 3esl_A           93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN  150 (202)
T ss_dssp             TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred             cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence            335677778877777655433 344666777777788888888888887777666643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	319
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 21/166 (12%), Positives = 50/166 (30%), Gaps = 4/166 (2%)

Query: 79  NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 138
               Y  +       R +   +                 +  +   + + G +  A D  
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV-HGNLACVYYEQGLIDLAIDTY 260

Query: 139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 198
            + +         +Y  L N   ++G +  A         +       +   L +   + 
Sbjct: 261 RRAIELQPH-FPDAYCNLANALKEKGSVAEA-EDCYNTALRLCPTHADSLNNLANIKREQ 318

Query: 199 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 244
           GNI+ A        ++ F     A++ +   L + GK+  A+  ++
Sbjct: 319 GNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.78
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.77
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.55
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.49
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.49
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.48
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.45
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.44
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.41
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.38
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.35
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.28
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.06
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.0
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.97
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.93
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.91
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.89
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.86
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.79
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.78
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.76
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.69
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.67
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.63
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.61
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.54
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.53
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.42
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.37
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.37
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.35
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.29
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.24
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.21
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.16
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.13
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.12
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.11
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.05
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.03
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.99
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.98
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.76
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.52
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.52
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.44
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.1
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.08
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.77
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.44
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.15
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.02
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.96
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.68
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.07
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	85.17
d1bpoa1	157	Clathrin heavy-chain linker domain {Rat (Rattus no	82.27
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	81.69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.6e-22  Score=160.30  Aligned_cols=296  Identities=13%  Similarity=0.021  Sum_probs=233.9

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK   95 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   95 (319)
                      +...+.+.|++++|++.|+++.+..+ -+...+..+...+.+.|++++|...|++..+..+. +..++..+..++.+.|+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence            34556677888888888888776533 25677777888888888888888888888775432 56777888888888888


Q ss_pred             hhHHHHHHHHHHhCCC----------------------------------------------------------------
Q 020976           96 YKLGLEILSAMKRKGY----------------------------------------------------------------  111 (319)
Q Consensus        96 ~~~a~~~~~~~~~~~~----------------------------------------------------------------  111 (319)
                      +++|++.+....+...                                                                
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence            8888877776644321                                                                


Q ss_pred             ---CCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhH
Q 020976          112 ---TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH  188 (319)
Q Consensus       112 ---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  188 (319)
                         +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+......... +...+
T Consensus       163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~  240 (388)
T d1w3ba_         163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVH  240 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHH
T ss_pred             ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHH
Confidence               1123344555566777889999999999887753 335677888999999999999999999998876544 66677


Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccC
Q 020976          189 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAK  265 (319)
Q Consensus       189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~  265 (319)
                      ..+...+.+.|++++|...+++..+.. +.+..++..+..++...|++++|.+.++.....   +...+..+...+...|
T Consensus       241 ~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  319 (388)
T d1w3ba_         241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence            888899999999999999999998864 456678889999999999999999999876643   6678888899999999


Q ss_pred             ChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976          266 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI  317 (319)
Q Consensus       266 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i  317 (319)
                      ++++|+..+++.++... -+..++..+..+|.+.|++++|.+.|++..+...
T Consensus       320 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P  370 (388)
T d1w3ba_         320 NIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             CHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999987532 2577888999999999999999999999876554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-20  Score=152.31  Aligned_cols=286  Identities=11%  Similarity=0.027  Sum_probs=242.4

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-----------
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA-----------   77 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------   77 (319)
                      ++.++..+...+.+.|++++|+..|++..+..+. +..+|..+...+.+.|++++|.+.+.........           
T Consensus        32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  110 (388)
T d1w3ba_          32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA  110 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccccccccccccccccccccccccccccc
Confidence            5778899999999999999999999999886443 6789999999999999999999998776553211           


Q ss_pred             --------------------------------------------------------CChhhHHHHHHHHHhcCChhHHHH
Q 020976           78 --------------------------------------------------------PNAITYTTIMKCCFRNRKYKLGLE  101 (319)
Q Consensus        78 --------------------------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~  101 (319)
                                                                              -+...+..+...+...|++++|..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  190 (388)
T d1w3ba_         111 LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH  190 (388)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHH
Confidence                                                                    123445556667778899999999


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 020976          102 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF  181 (319)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  181 (319)
                      .+++..+.. +-+...+..+...+...|++++|...+++....+ +.+...+..+...+.+.|++++|...|++..+..+
T Consensus       191 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  268 (388)
T d1w3ba_         191 HFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP  268 (388)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            999988764 4566788889999999999999999999988863 34667788899999999999999999999988754


Q ss_pred             CCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHH
Q 020976          182 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMV  258 (319)
Q Consensus       182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~  258 (319)
                      . +..++..+...+...|++++|...++...... +.+...+..+..++...|++++|...|++....   ++.++..+.
T Consensus       269 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  346 (388)
T d1w3ba_         269 H-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA  346 (388)
T ss_dssp             S-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3 56788899999999999999999999988764 667788899999999999999999999997754   566888899


Q ss_pred             HHHHccCChhHHHHHHHHHHHcCCcc-CHHHHHHHHHHHHhcCC
Q 020976          259 HNLCKAKRLPSASKLLLSCLKSGVRI-LKSAQKAVVDGLRHSGC  301 (319)
Q Consensus       259 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~  301 (319)
                      ..|...|++++|...|++.++.  .| +...|..+..+|.+.||
T Consensus       347 ~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         347 SVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999875  44 57789999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.4e-16  Score=120.86  Aligned_cols=227  Identities=11%  Similarity=-0.030  Sum_probs=144.9

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 020976           15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR   94 (319)
Q Consensus        15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (319)
                      .....+.+.|++++|+..|+++.+..+. +..+|..+..++...|++++|...|++..+..+. +...+..+..++...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence            3566788999999999999999887543 6888999999999999999999999998876433 6788888889999999


Q ss_pred             ChhHHHHHHHHHHhCCCCCCcccH----------------HHHHHHHHHcCchHHHHHHHHHHHhCC-CccChhhHHHHH
Q 020976           95 KYKLGLEILSAMKRKGYTFDGFGY----------------CTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTLI  157 (319)
Q Consensus        95 ~~~~a~~~~~~~~~~~~~~~~~~~----------------~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~  157 (319)
                      ++++|.+.+++.....  |+....                ...+..+...+.+.++...+.+..... ..++..++..+.
T Consensus       102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~  179 (323)
T d1fcha_         102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG  179 (323)
T ss_dssp             CHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             cccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            9999999999887653  221110                011112233344555555555544421 112334455555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 020976          158 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID  237 (319)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  237 (319)
                      ..+...|++++|...+++.....+. +...+..+...+...|++++|...+++..+.. +-+..++..+..+|.+.|+++
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~  257 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHR  257 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHH
Confidence            5566666666666666665554322 34455555556666666666666666655542 233445555555555666666


Q ss_pred             HHHHHHHhhc
Q 020976          238 HAINVFESME  247 (319)
Q Consensus       238 ~a~~~~~~~~  247 (319)
                      +|.+.|++..
T Consensus       258 ~A~~~~~~al  267 (323)
T d1fcha_         258 EAVEHFLEAL  267 (323)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6655555443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.8e-16  Score=122.29  Aligned_cols=253  Identities=8%  Similarity=-0.024  Sum_probs=199.1

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC
Q 020976           50 ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG  129 (319)
Q Consensus        50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  129 (319)
                      .....+.+.|++++|...|+++.+..+. +..+|..+..++...|++++|...+.+..+.. +-+...+..+..++...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            4566788999999999999999987533 68899999999999999999999999998875 556778888999999999


Q ss_pred             chHHHHHHHHHHHhCCCccChh----------------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHHhHHHHH
Q 020976          130 RLKEATDYMEQMVTDGVQLDIV----------------SYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHTILI  192 (319)
Q Consensus       130 ~~~~a~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~  192 (319)
                      ++++|.+.+++.....  |+..                .....+..+...+.+.++.+.+.+..+..+ .++...+..+.
T Consensus       102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~  179 (323)
T d1fcha_         102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG  179 (323)
T ss_dssp             CHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             cccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            9999999999987742  2211                111223334455678889999988876543 33566788888


Q ss_pred             HHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhH
Q 020976          193 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPS  269 (319)
Q Consensus       193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~  269 (319)
                      ..+...|++++|...++...... +-+..++..+..++...|++++|.+.|++....   ++.+|..+..+|...|++++
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  258 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE  258 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHH
Confidence            89999999999999999998764 456788899999999999999999999987643   67789999999999999999


Q ss_pred             HHHHHHHHHHcC----------CccCHHHHHHHHHHHHhcCCHHHHHH
Q 020976          270 ASKLLLSCLKSG----------VRILKSAQKAVVDGLRHSGCRREAKK  307 (319)
Q Consensus       270 a~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~~  307 (319)
                      |+..|++.++..          .......|..+-.++...|+.+.+..
T Consensus       259 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         259 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999987631          11122355666667777777765543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=6.1e-12  Score=99.51  Aligned_cols=297  Identities=15%  Similarity=0.045  Sum_probs=210.4

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC----hhh
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDSGHA-PN----AIT   82 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~   82 (319)
                      ........+...|++++|++++++..+.....+    ..++..+...+...|++++|...|++....... ++    ...
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            344455667899999999999999887532211    346777888999999999999999988652111 11    345


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC---cccHHHHHHHHHHcCchHHHHHHHHHHHhC----CCccChh
Q 020976           83 YTTIMKCCFRNRKYKLGLEILSAMKRK----GYTFD---GFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQLDIV  151 (319)
Q Consensus        83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~  151 (319)
                      +..+...+...|++..+...+......    +....   ...+..+...+...|+++.+...+......    +......
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            566777888999999999988876542    11111   124455667888999999999999888763    2223344


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCC---Chhh
Q 020976          152 SYNTLINLYCKEGKLEAAYLLLDEMEKQ----GFEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEA  222 (319)
Q Consensus       152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~  222 (319)
                      .+......+...++...+...+.+....    +..+  ....+......+...|+++.|...+....+.....   ....
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            5666777788899999999888876542    1111  12345666777888999999999998876653222   2234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhccC---------CchhHHHHHHHHHccCChhHHHHHHHHHHHc----CCcc----C
Q 020976          223 YNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS----GVRI----L  285 (319)
Q Consensus       223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~----~  285 (319)
                      +..+..++...|++++|...+++....         ....+..+...|...|++++|.+.+++.++.    |...    .
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~  333 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE  333 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHH
Confidence            556788899999999999999876521         3456788889999999999999999987653    2211    2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHH
Q 020976          286 KSAQKAVVDGLRHSGCRREAKKI  308 (319)
Q Consensus       286 ~~~~~~l~~~~~~~g~~~~a~~~  308 (319)
                      ...+..++..+...+..+++.+-
T Consensus       334 ~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         334 GEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCChHHHHH
Confidence            23455666777788887777654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.7e-11  Score=95.24  Aligned_cols=215  Identities=10%  Similarity=0.030  Sum_probs=163.7

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      ...|+.+-..+.+.+++++|+++++.+.+.++. +...|+....++...| ++++|...+++.....+. +..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence            456777778888899999999999999987544 6778888888888766 589999999999886544 7889999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCC---
Q 020976           89 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK---  165 (319)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  165 (319)
                      .+.+.|++++|++.++++.+.. +.+...|..+...+.+.|++++|+..++++.+.+ +.+...|+.+..++.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence            9999999999999999999875 6678889999999999999999999999998863 3466778877777766655   


Q ss_pred             ---HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHH
Q 020976          166 ---LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-NLEAYNCIVDRL  230 (319)
Q Consensus       166 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~  230 (319)
                         +++|++.+....+..+. +...|..+...+.. ...+++...++...+....+ +...+..++..|
T Consensus       199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence               57888888888876443 56666666555544 44577777777776653222 233344444444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=4.1e-11  Score=94.60  Aligned_cols=269  Identities=10%  Similarity=-0.001  Sum_probs=194.2

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----CCcc
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPN----AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-----FDGF  116 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~  116 (319)
                      .........+...|++++|.+++++..+.....+    ..++..+..++...|++++|.+.+++..+....     ....
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            3344456677899999999999999987532211    246777888999999999999999988753211     1123


Q ss_pred             cHHHHHHHHHHcCchHHHHHHHHHHHhC----CCccC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCcH
Q 020976          117 GYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF----ECDK  185 (319)
Q Consensus       117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~  185 (319)
                      .+..+...+...|++..+...+.+....    +....   ...+..+...+...|+++.+...+........    ....
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            4555667788899999999998876542    11111   23456677888999999999999998875422    2233


Q ss_pred             HhHHHHHHHHhccCChhHHHHHHHHHHhc----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC-------Cch
Q 020976          186 YTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDS--NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-------DSF  252 (319)
Q Consensus       186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~  252 (319)
                      ..+......+...++...+...+......    +..+  ....+......+...|+++.|...++.....       ...
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  252 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  252 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence            45566667778889999998888776543    1111  1234556667788999999999999987644       223


Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHH----cCCccC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020976          253 TYSSMVHNLCKAKRLPSASKLLLSCLK----SGVRIL-KSAQKAVVDGLRHSGCRREAKKIQSKIRM  314 (319)
Q Consensus       253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (319)
                      .+..+...+...|++++|...+++++.    .+..|+ ...+..+..+|.+.|++++|.+.+++..+
T Consensus       253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            455678889999999999999998764    244443 45778888999999999999999987643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.6e-11  Score=95.34  Aligned_cols=225  Identities=8%  Similarity=0.031  Sum_probs=169.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIA  123 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  123 (319)
                      ...|+.+...+.+.+.+++|+++++++.+..+. +..+|+....++...| ++++|+..+++..+.. +-+..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            456677777888899999999999999997543 6778888888888876 5899999999998875 667888999999


Q ss_pred             HHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCC---
Q 020976          124 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN---  200 (319)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  200 (319)
                      .+.+.|++++|+..++++.+.. +.+...|..+..++...|++++|++.++++.+..+. +...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence            9999999999999999999863 457889999999999999999999999999987654 66677776666655554   


Q ss_pred             ---hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc--C---CchhHHHHHHHHHcc--CChhHH
Q 020976          201 ---IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV--K---DSFTYSSMVHNLCKA--KRLPSA  270 (319)
Q Consensus       201 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~--~~~~~a  270 (319)
                         +++|...+....+.. +.+...+..+...+...| .+++.+.++....  +   ++..+..++..|...  +..+.+
T Consensus       199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~  276 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  276 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence               567888888888764 446667776666555443 4566666655432  1   444555666665432  333444


Q ss_pred             HHHHH
Q 020976          271 SKLLL  275 (319)
Q Consensus       271 ~~~~~  275 (319)
                      ...++
T Consensus       277 ~~~~~  281 (315)
T d2h6fa1         277 EDILN  281 (315)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            43333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=5.1e-11  Score=92.37  Aligned_cols=216  Identities=7%  Similarity=-0.060  Sum_probs=106.7

Q ss_pred             hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--------------hhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020976           61 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK--------------YKLGLEILSAMKRKGYTFDGFGYCTVIAAFV  126 (319)
Q Consensus        61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  126 (319)
                      .+++..+|+++...- +.+...|...+..+...+.              .++|..+|++..+...+.+...|...+....
T Consensus        32 ~~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          32 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345666677666542 2345556555554443221              2445555555554332333344455555555


Q ss_pred             HcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHH-HhccCChhHHH
Q 020976          127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG-LCKAGNIKGAR  205 (319)
Q Consensus       127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~  205 (319)
                      +.|+++.|..+|+++..........+|...+..+.+.|+.+.|.++|..+.+.++. +...|...... +...|+.+.|.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence            55666666666665555322222234555555555556666666666655544322 22222222221 22345555566


Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---C----chhHHHHHHHHHccCChhHHHHHHHHHH
Q 020976          206 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D----SFTYSSMVHNLCKAKRLPSASKLLLSCL  278 (319)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~  278 (319)
                      .+|+.+.+.. +.+...+...+..+.+.|+++.|+.+|++....   +    ...|...+..-...|+.+.+.++.+++.
T Consensus       190 ~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6665555542 334455555555555555555555555554322   1    1245555554455555555555555554


Q ss_pred             H
Q 020976          279 K  279 (319)
Q Consensus       279 ~  279 (319)
                      +
T Consensus       269 ~  269 (308)
T d2onda1         269 T  269 (308)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=8.8e-11  Score=91.02  Aligned_cols=220  Identities=12%  Similarity=-0.006  Sum_probs=167.4

Q ss_pred             hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--------------cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 020976           26 TDNALRMFRGLQKHGFVPELVTYNILIKGLCK--------------AGRLRTARWILKELGDSGHAPNAITYTTIMKCCF   91 (319)
Q Consensus        26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (319)
                      .+++..+|+++... .+.++..|...+..+-.              .+..++|..+|++..+...+.+...|...+....
T Consensus        32 ~~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          32 TKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45677889888775 33466777665554432              2345788999999887655556778888889999


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHH-HHhcCCHHHHH
Q 020976           92 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL-YCKEGKLEAAY  170 (319)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~  170 (319)
                      +.|+++.|..+|+++.+.........|...+....+.|+.+.|.++|+++...+ +.+...|...... +...|+.+.|.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHH
Confidence            999999999999999876422223468889999999999999999999998864 3344455444443 34568999999


Q ss_pred             HHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 020976          171 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG-FDSN--LEAYNCIVDRLGKDGKIDHAINVFESME  247 (319)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~  247 (319)
                      .+|+.+.+..+. +...+...+......|+++.|..+|++..+.. ..|.  ...|...+..-...|+.+.+..+++++.
T Consensus       190 ~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999986333 67788999999999999999999999988763 2332  3467777877788999999999998775


Q ss_pred             c
Q 020976          248 V  248 (319)
Q Consensus       248 ~  248 (319)
                      +
T Consensus       269 ~  269 (308)
T d2onda1         269 T  269 (308)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=6.6e-12  Score=98.73  Aligned_cols=272  Identities=8%  Similarity=-0.077  Sum_probs=194.1

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----------hcCChhHHHHHHHHHhhCCCCCChhhH
Q 020976           14 NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC----------KAGRLRTARWILKELGDSGHAPNAITY   83 (319)
Q Consensus        14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (319)
                      ..++......+..++|+++++...+.++. +...|+..-..+.          ..|++++|+.+++......+. +...|
T Consensus        33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~  110 (334)
T d1dcea1          33 QAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTW  110 (334)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHH
Confidence            33444444444558999999999886433 4445544333322          334578899999998876433 77788


Q ss_pred             HHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCcccHHH-HHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 020976           84 TTIMKCCFRNRK--YKLGLEILSAMKRKGYTFDGFGYCT-VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY  160 (319)
Q Consensus        84 ~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (319)
                      ..+..++...+.  ++++...+.++.+.. +++...+.. ....+...+.++.|+..++.+.... +-+...|+.+..++
T Consensus       111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~  188 (334)
T d1dcea1         111 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL  188 (334)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            888777777664  789999999998774 445555544 4456677899999999999988874 34778899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 020976          161 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI  240 (319)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  240 (319)
                      ...|++++|...+....+.  .|+.   ..+...+...+..+++...+....... +++...+..+...+...++.++|.
T Consensus       189 ~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~  262 (334)
T d1dcea1         189 PQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESC  262 (334)
T ss_dssp             HHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHH
Confidence            9999998887666554432  1111   123334455677778888888877664 455667777788888899999999


Q ss_pred             HHHHhhccCCc---hhHHHHHHHHHccCChhHHHHHHHHHHHcCCccC-HHHHHHHHHHHH
Q 020976          241 NVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL-KSAQKAVVDGLR  297 (319)
Q Consensus       241 ~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~  297 (319)
                      ..+.+....++   ..+..+...+...|++++|...++++.+.  .|+ ...|..+...+.
T Consensus       263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence            99999887754   56777888999999999999999999886  454 445565555444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=3.9e-10  Score=84.91  Aligned_cols=95  Identities=11%  Similarity=-0.092  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV  126 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  126 (319)
                      +|..+...|.+.|++++|.+.|++.....+. ++.+|..+..++.+.|++++|++.|++..+.. +-+..++..+..++.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence            4444445555555555555555555543222 34445555555555555555555555555442 223334444444455


Q ss_pred             HcCchHHHHHHHHHHHh
Q 020976          127 KIGRLKEATDYMEQMVT  143 (319)
Q Consensus       127 ~~~~~~~a~~~~~~~~~  143 (319)
                      ..|++++|...|+...+
T Consensus       117 ~~g~~~~A~~~~~~al~  133 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQ  133 (259)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHh
Confidence            55555555555554444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=2.6e-11  Score=91.56  Aligned_cols=198  Identities=12%  Similarity=-0.048  Sum_probs=135.4

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC   89 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   89 (319)
                      ..+|..+...|.+.|++++|++.|++..+..+. ++.+|..+..++.+.|++++|.+.|+++.+..+. +..++..+..+
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~  114 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHH
Confidence            346777888999999999999999999986543 7889999999999999999999999999986433 57788899999


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCH---
Q 020976           90 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL---  166 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---  166 (319)
                      +...|++++|.+.+++..+.. +.+......+..++.+.+..+.+..+........  ++...++ ++..+......   
T Consensus       115 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~  190 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTL  190 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHH
Confidence            999999999999999998874 4444444444455556666665655555555532  2222222 22222222111   


Q ss_pred             -HHHHHHHHHHHHcCCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 020976          167 -EAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIG  215 (319)
Q Consensus       167 -~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  215 (319)
                       +.+...+......  .| ...++..+...+...|++++|...|+.....+
T Consensus       191 ~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         191 MERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             HHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence             1222111111111  11 22356667778888888888888888887653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=1.2e-11  Score=97.12  Aligned_cols=259  Identities=7%  Similarity=-0.075  Sum_probs=181.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH----------HhcCChhHHHHHHHHHHhCCCCCCcccH
Q 020976           49 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC----------FRNRKYKLGLEILSAMKRKGYTFDGFGY  118 (319)
Q Consensus        49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~  118 (319)
                      ..++......+..++|.++++++....+. +...|+..-..+          ...|++++|+.+++...+.. +-+...|
T Consensus        33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~  110 (334)
T d1dcea1          33 QAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW  110 (334)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence            33433333344458999999999875322 344554433222          23345788999999988774 5567777


Q ss_pred             HHHHHHHHHcC--chHHHHHHHHHHHhCCCccChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 020976          119 CTVIAAFVKIG--RLKEATDYMEQMVTDGVQLDIVSYN-TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL  195 (319)
Q Consensus       119 ~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (319)
                      ..+..++...+  ++++|...++++.... +++...+. .....+...+.+++|+..++...+..+. +...|..+...+
T Consensus       111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~  188 (334)
T d1dcea1         111 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL  188 (334)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence            77777777765  4789999999988863 33455554 4456777889999999999999887654 677888899999


Q ss_pred             hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHH
Q 020976          196 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASK  272 (319)
Q Consensus       196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~  272 (319)
                      ...|++++|...+....+..  |.   .......+...+..+++...+......   +...+..+...+...++.++|..
T Consensus       189 ~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~  263 (334)
T d1dcea1         189 PQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK  263 (334)
T ss_dssp             HHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence            99999888765554443321  11   122333445556666677666655433   55566677777888899999999


Q ss_pred             HHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976          273 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI  317 (319)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i  317 (319)
                      .+.+.....+ .+...+..+..++...|+.++|.+.+++..+.+.
T Consensus       264 ~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         264 ELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             HHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            9998876532 2567888899999999999999999999877654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=1.2e-08  Score=77.96  Aligned_cols=60  Identities=15%  Similarity=0.036  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976           48 YNILIKGLCKAGRLRTARWILKELGDS----GHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMK  107 (319)
Q Consensus        48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  107 (319)
                      |......|...|++++|.+.|.+..+.    +.++ -..+|..+..+|.+.|++++|.+.+++..
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~  104 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI  104 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence            333444555555566665555555431    1111 12345555555555555555555555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.9e-08  Score=69.45  Aligned_cols=139  Identities=14%  Similarity=0.044  Sum_probs=69.8

Q ss_pred             HHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 020976           18 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK   97 (319)
Q Consensus        18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   97 (319)
                      ..+...|+++.|++.|+++    .+|+..+|..+..+|...|++++|.+.|++..+.... +...|..+..++.+.|+++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence            3445555566665555442    1244555555555555666666666666655554322 4555555555555556666


Q ss_pred             HHHHHHHHHHhCCCCCCcc-cHHHHHHHHHHcCchHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020976           98 LGLEILSAMKRKGYTFDGF-GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDE  175 (319)
Q Consensus        98 ~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~  175 (319)
                      +|++.|++..... +.+.. .|..       .|.              ...+ ...++..+..++.+.|++++|.+.+..
T Consensus        88 ~A~~~~~kAl~~~-~~n~~~~~~~-------~~~--------------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~  145 (192)
T d1hh8a_          88 LAIKDLKEALIQL-RGNQLIDYKI-------LGL--------------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  145 (192)
T ss_dssp             HHHHHHHHHHHTT-TTCSEEECGG-------GTB--------------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-ccCchHHHHH-------hhh--------------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            6655555554321 11110 0000       000              0000 112344566677777777777777777


Q ss_pred             HHHcCCCC
Q 020976          176 MEKQGFEC  183 (319)
Q Consensus       176 ~~~~~~~~  183 (319)
                      ..+..+.+
T Consensus       146 A~~~~~~~  153 (192)
T d1hh8a_         146 ATSMKSEP  153 (192)
T ss_dssp             HHTTCCSG
T ss_pred             HHhcCCCc
Confidence            76654443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=6.5e-08  Score=68.82  Aligned_cols=68  Identities=13%  Similarity=-0.128  Sum_probs=61.0

Q ss_pred             CCcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976            6 LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS   74 (319)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   74 (319)
                      .+|+..+|..+..++...|++++|++.|++..+.+.. +...|..+..++.+.|++++|.+.|++....
T Consensus        32 ~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~   99 (192)
T d1hh8a_          32 QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ   99 (192)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            3577888999999999999999999999999987544 7889999999999999999999999998764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=8.9e-09  Score=74.11  Aligned_cols=101  Identities=12%  Similarity=0.005  Sum_probs=79.2

Q ss_pred             CcchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 020976            7 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI   86 (319)
Q Consensus         7 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   86 (319)
                      .|++..+......+.+.|++++|+..|++..+..+. ++..|..+..+|.+.|++++|...|++..+..+. +..+|..+
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~l   78 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL   78 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHH
Confidence            377777778888888888888888888887776443 7778888888888888888888888888765322 56778888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhC
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      ..++...|++++|+..|++..+.
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh
Confidence            88888888888888888877654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.5e-08  Score=63.50  Aligned_cols=92  Identities=13%  Similarity=-0.046  Sum_probs=58.5

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK   95 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   95 (319)
                      -...+.+.|++++|+..|++..+..+. +...|..+..++...|++++|...+++....++ .+...|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccC
Confidence            345566666677777777666665332 556666666666666666666666666666533 256666666666666666


Q ss_pred             hhHHHHHHHHHHhC
Q 020976           96 YKLGLEILSAMKRK  109 (319)
Q Consensus        96 ~~~a~~~~~~~~~~  109 (319)
                      +++|+..|++..+.
T Consensus        87 ~~~A~~~~~~a~~~  100 (117)
T d1elwa_          87 FEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666666666654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=1.1e-07  Score=72.61  Aligned_cols=233  Identities=12%  Similarity=0.033  Sum_probs=148.8

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976           28 NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK  107 (319)
Q Consensus        28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  107 (319)
                      ++.+++.+..+.+ +|....+. ++. -...+++++|.++|.+.               ...|...+++++|.+.|.+..
T Consensus         3 ~~~~~l~~aek~~-~~~~~~~~-~~~-~~~~~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~   64 (290)
T d1qqea_           3 DPVELLKRAEKKG-VPSSGFMK-LFS-GSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAA   64 (290)
T ss_dssp             CHHHHHHHHHHHS-SCCCTHHH-HHS-CCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhc-CcchhHHH-Hhc-CCccccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHH
Confidence            4556666655542 22332222 111 01223467777666554               557888999999999998886


Q ss_pred             hC----CCCC-CcccHHHHHHHHHHcCchHHHHHHHHHHHhC----C-CccChhhHHHHHHHHHh-cCCHHHHHHHHHHH
Q 020976          108 RK----GYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----G-VQLDIVSYNTLINLYCK-EGKLEAAYLLLDEM  176 (319)
Q Consensus       108 ~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~  176 (319)
                      +.    +-++ -..+|..+..+|.+.|++++|...+++....    | ......++..+...|.. .|++++|.+.+.+.
T Consensus        65 ~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A  144 (290)
T d1qqea_          65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA  144 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            53    1111 2357888889999999999999999877653    1 11123456666666744 69999999999887


Q ss_pred             HHc----CCCC-cHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHh
Q 020976          177 EKQ----GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL------EAYNCIVDRLGKDGKIDHAINVFES  245 (319)
Q Consensus       177 ~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~  245 (319)
                      .+.    +..+ -..++..+...+...|++++|...++++.........      ..+...+.++...|+++.|...+++
T Consensus       145 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~  224 (290)
T d1qqea_         145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE  224 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred             HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            542    2111 1345777889999999999999999998875322111      1234455567788999999999998


Q ss_pred             hccCCc--------hhHHHHHHHHHc--cCChhHHHHHHHHHH
Q 020976          246 MEVKDS--------FTYSSMVHNLCK--AKRLPSASKLLLSCL  278 (319)
Q Consensus       246 ~~~~~~--------~~~~~l~~~~~~--~~~~~~a~~~~~~~~  278 (319)
                      ....++        .....++.++..  .+.+++|+..|+++.
T Consensus       225 ~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            876532        234455555544  234667777665543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.89  E-value=4.3e-06  Score=62.47  Aligned_cols=226  Identities=9%  Similarity=-0.019  Sum_probs=134.6

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccHH
Q 020976           44 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYC  119 (319)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  119 (319)
                      |+..+..|...+...+++++|.++|++..+.|   +...+..|...|..    ..+...+...+......+   ++....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            45566677777778888888888888887765   55566666666665    456777888877777665   233334


Q ss_pred             HHHHHHHH----cCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHH
Q 020976          120 TVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTIL  191 (319)
Q Consensus       120 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  191 (319)
                      .+...+..    ..+.+.|...++.....|..   .....+...+..    ......+...+......   .+...+..+
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L  148 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL  148 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence            44444433    35667777788777776532   222223333332    34455666666665543   244555556


Q ss_pred             HHHHhc----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhccC-CchhHHHHHHHHH
Q 020976          192 IDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK-DSFTYSSMVHNLC  262 (319)
Q Consensus       192 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~  262 (319)
                      ...+..    ..+...+...++...+.|   +......+...|..    ..+++.|...|.+..+. ++..+..|...|.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~  225 (265)
T d1ouva_         149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY  225 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHH
Confidence            666554    345556666666666543   34444455544543    45677777777765544 5556666666665


Q ss_pred             c----cCChhHHHHHHHHHHHcCCcc
Q 020976          263 K----AKRLPSASKLLLSCLKSGVRI  284 (319)
Q Consensus       263 ~----~~~~~~a~~~~~~~~~~~~~~  284 (319)
                      .    ..+.++|.++|++..+.|..+
T Consensus       226 ~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         226 NGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             cCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            4    335667777777776666543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=8.7e-08  Score=65.97  Aligned_cols=93  Identities=10%  Similarity=0.006  Sum_probs=56.2

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 020976           15 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR   94 (319)
Q Consensus        15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (319)
                      .....|.+.|++++|+..|++..+.+.. +...|..+..+|...|++++|.+.|++..+.... +..+|..+..++...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence            3444556666666666666666655332 5556666666666666666666666666654322 4556666666666666


Q ss_pred             ChhHHHHHHHHHHhC
Q 020976           95 KYKLGLEILSAMKRK  109 (319)
Q Consensus        95 ~~~~a~~~~~~~~~~  109 (319)
                      ++++|...+++....
T Consensus        93 ~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          93 KFRAALRDYETVVKV  107 (159)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc
Confidence            666666666666654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.4e-07  Score=61.12  Aligned_cols=91  Identities=18%  Similarity=0.102  Sum_probs=48.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCch
Q 020976           52 IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL  131 (319)
Q Consensus        52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  131 (319)
                      ...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..+.+..+.+ +.++..|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            34445555555555555555544322 44555555555555555555555555555543 44455555555555555555


Q ss_pred             HHHHHHHHHHHhC
Q 020976          132 KEATDYMEQMVTD  144 (319)
Q Consensus       132 ~~a~~~~~~~~~~  144 (319)
                      ++|+..|++..+.
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            5555555555543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.79  E-value=1e-05  Score=60.31  Aligned_cols=221  Identities=14%  Similarity=0.001  Sum_probs=113.6

Q ss_pred             chHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHH
Q 020976            9 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITYT   84 (319)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (319)
                      |+..+..|-..+.+.+++++|++.|++..+.|   +...+..|...|..    ..+...|..++......+   +.....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            34455556666666677777777777666554   34444445555554    446666666666666543   233333


Q ss_pred             HHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCCCccChhhHHHH
Q 020976           85 TIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTL  156 (319)
Q Consensus        85 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  156 (319)
                      .+...+..    ..+.+.|...++.....|.   ......+...+..    ......+...+......   .+...+..+
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L  148 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL  148 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence            33333332    2345666666666665542   1122222222222    23344555555554443   244455555


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhc----cCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 020976          157 INLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVD  228 (319)
Q Consensus       157 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  228 (319)
                      ...+..    ..+...+..+++...+.|   +......+...+..    ..+.+.|...|....+.|   +...+..|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~  222 (265)
T d1ouva_         149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  222 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence            555554    344555666666655543   33344444444433    346666777776666654   2334445555


Q ss_pred             HHHh----cCCHHHHHHHHHhhc
Q 020976          229 RLGK----DGKIDHAINVFESME  247 (319)
Q Consensus       229 ~~~~----~~~~~~a~~~~~~~~  247 (319)
                      .|..    ..+.++|.+.|++..
T Consensus       223 ~y~~G~g~~~n~~~A~~~~~kAa  245 (265)
T d1ouva_         223 MQYNGEGVTRNEKQAIENFKKGC  245 (265)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHH
Confidence            5543    235666666666543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.1e-07  Score=63.99  Aligned_cols=93  Identities=18%  Similarity=0.118  Sum_probs=60.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC
Q 020976           50 ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG  129 (319)
Q Consensus        50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  129 (319)
                      .....|.+.|++++|...|++..+..+. +...|..+..++...|++++|.+.|++..+.. +-+..+|..+..++...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence            3445566677777777777777665432 56666666677777777777777777766654 445566666666777777


Q ss_pred             chHHHHHHHHHHHhC
Q 020976          130 RLKEATDYMEQMVTD  144 (319)
Q Consensus       130 ~~~~a~~~~~~~~~~  144 (319)
                      ++++|...+++....
T Consensus        93 ~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          93 KFRAALRDYETVVKV  107 (159)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc
Confidence            777777777766664

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=9.2e-08  Score=68.60  Aligned_cols=99  Identities=10%  Similarity=-0.011  Sum_probs=57.3

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020976           43 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVI  122 (319)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  122 (319)
                      |+...+......+.+.|++++|+..|++.....+ .+...|..+..+|.+.|++++|+..|++..+.. +-+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            4555555556666666666666666666555432 245556666666666666666666666665543 33444555566


Q ss_pred             HHHHHcCchHHHHHHHHHHHh
Q 020976          123 AAFVKIGRLKEATDYMEQMVT  143 (319)
Q Consensus       123 ~~~~~~~~~~~a~~~~~~~~~  143 (319)
                      .+|.+.|++++|+..|++...
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            666666666666666665543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.69  E-value=2.6e-05  Score=59.69  Aligned_cols=272  Identities=12%  Similarity=0.103  Sum_probs=149.9

Q ss_pred             cchHhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976            8 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus         8 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      ||..--..+...|.+.|.++.|..+|..+.         -|..++..+.+.++++.|.+++.+..      +..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence            344444566677888888888888887543         34556777788888888887776542      566788888


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHH
Q 020976           88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE  167 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  167 (319)
                      ..+.+......+     .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.+ .+
T Consensus        77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~  149 (336)
T d1b89a_          77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQ  149 (336)
T ss_dssp             HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HH
T ss_pred             HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hH
Confidence            888776655432     2223333445555677888888888888888888877643 2456667888888887754 34


Q ss_pred             HHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhc--------CCCCChhhHHHHHHHHHhcCCHHHH
Q 020976          168 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI--------GFDSNLEAYNCIVDRLGKDGKIDHA  239 (319)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a  239 (319)
                      +..+.+....  + .   .....++..|.+.+-++++.-++..+...        ..+++..-....+..+.+..+++..
T Consensus       150 kl~e~l~~~s--~-~---y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~  223 (336)
T d1b89a_         150 KMREHLELFW--S-R---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELY  223 (336)
T ss_dssp             HHHHHHHHHS--T-T---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHH
T ss_pred             HHHHHHHhcc--c-c---CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHH
Confidence            4444433221  1 1   11223334444444444444443332110        0133444445556666777776666


Q ss_pred             HHHHHhhccCCchhHHHHHHHHH-------------ccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHH
Q 020976          240 INVFESMEVKDSFTYSSMVHNLC-------------KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK  306 (319)
Q Consensus       240 ~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  306 (319)
                      .++.......+|...+.++....             +.++..-....++.....|   +....+++...|...++++.-+
T Consensus       224 ~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~  300 (336)
T d1b89a_         224 YRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALR  300 (336)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHH
Confidence            65555444334444444444444             4444444445555544433   3467888888999998876655


Q ss_pred             HHHH
Q 020976          307 KIQS  310 (319)
Q Consensus       307 ~~~~  310 (319)
                      +..+
T Consensus       301 ~~i~  304 (336)
T d1b89a_         301 TSID  304 (336)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.67  E-value=1.5e-07  Score=60.39  Aligned_cols=87  Identities=10%  Similarity=-0.062  Sum_probs=44.6

Q ss_pred             HHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 020976           17 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY   96 (319)
Q Consensus        17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   96 (319)
                      ...+.+.|++++|+..|++..+..+. +..+|..+..++.+.|++++|...|++..+..+. +..++..+..+|...|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence            34445555555555555555544322 4555555555555555555555555555543221 345555555555555555


Q ss_pred             hHHHHHHHH
Q 020976           97 KLGLEILSA  105 (319)
Q Consensus        97 ~~a~~~~~~  105 (319)
                      ++|++.+++
T Consensus       101 ~~A~~~l~~  109 (112)
T d1hxia_         101 NAALASLRA  109 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.63  E-value=2.4e-07  Score=59.39  Aligned_cols=89  Identities=10%  Similarity=-0.011  Sum_probs=52.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCc
Q 020976           51 LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR  130 (319)
Q Consensus        51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  130 (319)
                      +...+.+.|++++|...|++.....+. +..+|..+..++.+.|++++|+..+++..+.. |.+...+..+..+|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence            344455666666666666666554322 45566666666666666666666666665553 4445556666666666666


Q ss_pred             hHHHHHHHHHH
Q 020976          131 LKEATDYMEQM  141 (319)
Q Consensus       131 ~~~a~~~~~~~  141 (319)
                      +++|++.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.5e-07  Score=60.11  Aligned_cols=95  Identities=17%  Similarity=0.128  Sum_probs=61.9

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhCCCCCC-hhhHHHHHHH
Q 020976           14 NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR---LRTARWILKELGDSGHAPN-AITYTTIMKC   89 (319)
Q Consensus        14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~   89 (319)
                      ..+++.+...+++++|.+.|+.....++. ++.++..+..++.+.++   +++|.++|+++......|+ ..++..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            34666677777777777777777765433 66677777777765443   3457777777766443333 2356667777


Q ss_pred             HHhcCChhHHHHHHHHHHhC
Q 020976           90 CFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~  109 (319)
                      |.+.|++++|++.|+++.+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHh
Confidence            77777777777777777765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=5.3e-07  Score=58.57  Aligned_cols=25  Identities=12%  Similarity=-0.059  Sum_probs=10.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 020976          154 NTLINLYCKEGKLEAAYLLLDEMEK  178 (319)
Q Consensus       154 ~~l~~~~~~~~~~~~a~~~~~~~~~  178 (319)
                      ..+..+|.+.|++++|.+.|+++.+
T Consensus        76 ~~Lg~~y~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          76 FYLAVGNYRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3334444444444444444444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.3e-06  Score=58.45  Aligned_cols=96  Identities=9%  Similarity=-0.068  Sum_probs=46.3

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-CC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFV-PE-------------LVTYNILIKGLCKAGRLRTARWILKELGDSGHA   77 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   77 (319)
                      .+......+.+.|++++|+..|++..+.... +.             ..+|+.+..+|.+.|++++|...++......+.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~   94 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN   94 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence            3444556677788888888888777653111 00             122333344444444444444444444443211


Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 020976           78 PNAITYTTIMKCCFRNRKYKLGLEILSAMKR  108 (319)
Q Consensus        78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  108 (319)
                       ++.++..+..++...|++++|+..|++..+
T Consensus        95 -~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          95 -NEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence             344444444444444444444444444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8.8e-06  Score=56.22  Aligned_cols=113  Identities=8%  Similarity=-0.070  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976           46 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAF  125 (319)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  125 (319)
                      ..+......+.+.|++++|...|++..........              ....-......+.       ..+|+.+..+|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~nla~~y   72 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQALR-------LASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchhH-------HHHHHHHHHHH
Confidence            44555667788889999999999887753111000              0000000111110       12345566666


Q ss_pred             HHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 020976          126 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG  180 (319)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  180 (319)
                      .+.|++++|+..++..+... |.++.++..+..++...|++++|...|+...+..
T Consensus        73 ~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             Hhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            67777777777776666642 3356666666677777777777777777766653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4.2e-06  Score=54.82  Aligned_cols=96  Identities=16%  Similarity=0.175  Sum_probs=61.0

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC-----hhhHHHH
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA-PN-----AITYTTI   86 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l   86 (319)
                      +..+...+.+.|++++|++.|++.++.++. +...+..+..+|.+.|++++|.+.++++.+.... +.     ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            445566677777777777777777765433 5677777777777777777777777776652111 01     1244455


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhC
Q 020976           87 MKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      ...+...+++++|++.|++....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc
Confidence            55566666777777777665543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.37  E-value=8.2e-06  Score=55.27  Aligned_cols=108  Identities=11%  Similarity=0.095  Sum_probs=58.4

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 020976           12 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFV----PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM   87 (319)
Q Consensus        12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   87 (319)
                      .+..-...+.+.|++.+|+..|.+....-..    ++.....                    ...    .....+|..+.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~Nla   74 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD--------------------KKK----NIEISCNLNLA   74 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH--------------------HHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH--------------------hhh----hHHHHHHhhHH
Confidence            3444556677788888888888777653110    1110000                    000    00122445555


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976           88 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  144 (319)
                      .+|.+.|++++|++.+++..+.. |.+..+|..+..++...|++++|+..|+...+.
T Consensus        75 ~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          75 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56666666666666666665553 445556666666666666666666666666554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.35  E-value=6.5e-06  Score=56.88  Aligned_cols=64  Identities=5%  Similarity=-0.009  Sum_probs=37.6

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhC
Q 020976           80 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD  144 (319)
Q Consensus        80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  144 (319)
                      ...|..+..++.+.|++++|+..+++..+.. +.++.+|..+..++.+.|++++|+..|+...+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3345555555666666666666666666553 444555666666666666666666666666554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=7.2e-06  Score=53.67  Aligned_cols=56  Identities=9%  Similarity=0.181  Sum_probs=24.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHH
Q 020976           86 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV  142 (319)
Q Consensus        86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  142 (319)
                      +...+.+.|++++|++.|.+..+.+ +.+...+..+..+|.+.|++++|+..+++++
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            3334444444444444444444432 2334444444444444444444444444443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.29  E-value=1.4e-05  Score=55.11  Aligned_cols=98  Identities=8%  Similarity=-0.097  Sum_probs=50.9

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHHHhC---CCCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 020976           11 ATFNIMLNGLCKNRYTDNALRMFRGLQKH---GFVPE-----------LVTYNILIKGLCKAGRLRTARWILKELGDSGH   76 (319)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   76 (319)
                      ..+.-....+.+.|++++|+..|+.....   ...++           ..+|+.+..+|.+.|++++|+..+++.....+
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p   95 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS   95 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence            44556677788899999999999886542   11111           11233344444444555555555444444321


Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           77 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                       .+..+|..+..++...|++++|...|+++.+.
T Consensus        96 -~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          96 -ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             -chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             23444444444444444455554444444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.24  E-value=2.2e-05  Score=53.11  Aligned_cols=123  Identities=13%  Similarity=-0.078  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020976           47 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV  126 (319)
Q Consensus        47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  126 (319)
                      .+..-...+.+.|++++|...|.+....-..  ...           . .+....  ....    .....+|..+..+|.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~--~~~-----------~-~~~~~~--~~~~----~~~~~~~~Nla~~~~   78 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEE-----------W-DDQILL--DKKK----NIEISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTT-----------C-CCHHHH--HHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--hhh-----------h-hhHHHH--Hhhh----hHHHHHHhhHHHHHH
Confidence            4445556777889999999988887753111  000           0 000000  0000    112246778899999


Q ss_pred             HcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHH
Q 020976          127 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL  191 (319)
Q Consensus       127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  191 (319)
                      +.|++++|+..++...... |.+..+|..+..++...|++++|...|++..+..+. +......+
T Consensus        79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l  141 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY  141 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred             Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            9999999999999998863 557889999999999999999999999999987433 34444333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.21  E-value=2.4e-05  Score=53.93  Aligned_cols=78  Identities=9%  Similarity=-0.092  Sum_probs=52.1

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 020976          150 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR  229 (319)
Q Consensus       150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  229 (319)
                      ...|..+..++.+.|++++|+..+.+.++..+. +...|..+..++...|++++|...|+...+.. +.+......+..+
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~  154 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV  154 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            445666677777778888888877777765433 56677777777777788888877777777754 3344444444433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=6.5e-07  Score=73.55  Aligned_cols=224  Identities=6%  Similarity=-0.091  Sum_probs=123.3

Q ss_pred             HHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHHcCchHHHHHHHHH
Q 020976           63 TARWILKELGDSGHAPN-AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG-FGYCTVIAAFVKIGRLKEATDYMEQ  140 (319)
Q Consensus        63 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~  140 (319)
                      +|.+.|++..+.  +|+ ...+..+..++...+++++|   |+++...+  |+. ..++.  ....-...+..+.+.++.
T Consensus         4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~--e~~Lw~~~y~~~ie~~r~   74 (497)
T d1ya0a1           4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV--EQDLWNHAFKNQITTLQG   74 (497)
T ss_dssp             HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH--HHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH--HHHHHHHHHHHHHHHHHH
Confidence            677888888763  344 45666677777777877765   66665442  211 11111  111111234556677777


Q ss_pred             HHhCCCccChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 020976          141 MVTDGVQLDIVSYNTLINLY--CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS  218 (319)
Q Consensus       141 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  218 (319)
                      ..+....++..-.......+  ...+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+.......   
T Consensus        75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---  150 (497)
T d1ya0a1          75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---  150 (497)
T ss_dssp             HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred             hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence            66543333333222222222  22344555554444433322 2245566777778888899999988877766532   


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC---CchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 020976          219 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG  295 (319)
Q Consensus       219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  295 (319)
                      ...++..+...+...|++++|...|++....   +..+|+.+...+...|+..+|+..|.+.+... +|-+..+..+...
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~  229 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence            2357778889999999999999999987643   67899999999999999999999999998763 4677888888888


Q ss_pred             HHhcC
Q 020976          296 LRHSG  300 (319)
Q Consensus       296 ~~~~g  300 (319)
                      +.+..
T Consensus       230 ~~~~~  234 (497)
T d1ya0a1         230 LSKAL  234 (497)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            76644

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.8e-06  Score=70.92  Aligned_cols=166  Identities=8%  Similarity=-0.120  Sum_probs=87.0

Q ss_pred             hhHHHHHHHHHhhCCCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHH
Q 020976           61 LRTARWILKELGDSGHAPNAITYTTIMKCC--FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM  138 (319)
Q Consensus        61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  138 (319)
                      +..+.+.++...+....++..-....+..+  ...+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~  143 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ  143 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence            445666666665543334433322222222  22344555555444443332 344556667777777888888887777


Q ss_pred             HHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 020976          139 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS  218 (319)
Q Consensus       139 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  218 (319)
                      ......  . ...++..+...+...|++++|...|.+..+..+. +...|+.+...+...|+..+|...|.+..... +|
T Consensus       144 ~~al~~--~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~  218 (497)
T d1ya0a1         144 SSSCSY--I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FP  218 (497)
T ss_dssp             CHHHHH--H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BC
T ss_pred             HHHhCC--C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CC
Confidence            665542  1 2345667788888888899999988888877544 56788888888888888888888888888765 56


Q ss_pred             ChhhHHHHHHHHHh
Q 020976          219 NLEAYNCIVDRLGK  232 (319)
Q Consensus       219 ~~~~~~~l~~~~~~  232 (319)
                      ...++..|...+.+
T Consensus       219 ~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         219 FPAASTNLQKALSK  232 (497)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            66777777766654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.16  E-value=0.00014  Score=49.87  Aligned_cols=110  Identities=6%  Similarity=-0.057  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHH
Q 020976           45 LVTYNILIKGLCKAGRLRTARWILKELGDS---GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV  121 (319)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  121 (319)
                      ...+......+.+.|++++|...|++....   ...++...                 ......+       ....|..+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~~Nl   70 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF-------LLAAFLNL   70 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh-------HHHHHHhH
Confidence            345566677788888888888888776541   11111000                 0000000       11234445


Q ss_pred             HHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          122 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      ..+|.+.|++++|+..++...... +.+..+|..+..++...|++++|...|.+..+.
T Consensus        71 a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          71 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            556666666666666666666542 345555666666666666666666666666654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.13  E-value=3.8e-05  Score=53.29  Aligned_cols=122  Identities=11%  Similarity=0.019  Sum_probs=77.3

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 020976           16 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK   95 (319)
Q Consensus        16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   95 (319)
                      ........|++++|.+.|.........+  ..        .......-+...-..+..    .....+..+..++...|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~--~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGP--VL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSS--TT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCccc--cc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence            3356788999999999999988742111  00        000111111111111211    123456677777888888


Q ss_pred             hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHh-----CCCccChhh
Q 020976           96 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT-----DGVQLDIVS  152 (319)
Q Consensus        96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  152 (319)
                      +++|+..++++.+.. +.+...|..++.++.+.|+..+|++.|+++..     .|+.|+..+
T Consensus        83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            888888888887765 66777788888888888888888888877643     377777654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.12  E-value=0.00085  Score=51.14  Aligned_cols=237  Identities=12%  Similarity=0.096  Sum_probs=149.9

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 020976           13 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR   92 (319)
Q Consensus        13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (319)
                      |..++..+.+.++++.|.+++.+.      -+..+|..+...+.+......+     .+.......++.....++..|-.
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~  111 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQD  111 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHH
Confidence            556777888888888887776543      2667888888888887766543     22233344566777889999999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCcc--------ChhhHHHHHHHHHhcC
Q 020976           93 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL--------DIVSYNTLINLYCKEG  164 (319)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~  164 (319)
                      .|.+++...+++...... ..+...++.++..|++.+ .++..+.+...... ..+        ....|..++-.|.+.|
T Consensus       112 ~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~-y~~~k~~~~c~~~~l~~elv~Ly~~~~  188 (336)
T d1b89a_         112 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYE  188 (336)
T ss_dssp             TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             cCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHHHHHhcccc-CCHHHHHHHHHHcCChHHHHHHHHhcC
Confidence            999999999999877543 556777888999888864 34444444332111 111        1112344555555555


Q ss_pred             CHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 020976          165 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE  244 (319)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  244 (319)
                      +++.|..++   .+.  .++..-...++..+.+..+.+...++.....+.  .|  ...+.++......-++.+..+.++
T Consensus       189 ~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~  259 (336)
T d1b89a_         189 EYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFS  259 (336)
T ss_dssp             CHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred             CHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHH
Confidence            555554433   222  334444556677777888888777777766653  23  344555666666666666666665


Q ss_pred             hh-------------ccC-CchhHHHHHHHHHccCChhHHHH
Q 020976          245 SM-------------EVK-DSFTYSSMVHNLCKAKRLPSASK  272 (319)
Q Consensus       245 ~~-------------~~~-~~~~~~~l~~~~~~~~~~~~a~~  272 (319)
                      +.             ... +..+.+++...|...++++.-..
T Consensus       260 k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~~l~~  301 (336)
T d1b89a_         260 KVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRT  301 (336)
T ss_dssp             HTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchhHHHHH
Confidence            43             222 55678888888888888655333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=7.5e-05  Score=51.74  Aligned_cols=129  Identities=12%  Similarity=0.074  Sum_probs=90.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc
Q 020976           49 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI  128 (319)
Q Consensus        49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  128 (319)
                      ..........|++++|.+.|.+.....  +....        ......+.+...-..+...    ....+..+...+...
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~   80 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIAC   80 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence            344456778899999999999988731  11100        0011111122222222211    235677889999999


Q ss_pred             CchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCcHHhHHHHH
Q 020976          129 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME-----KQGFECDKYTHTILI  192 (319)
Q Consensus       129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l~  192 (319)
                      |++++|+..++++.... +-+...|..++.++...|+.++|++.|+++.     +.|+.|+..+-...-
T Consensus        81 g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~  148 (179)
T d2ff4a2          81 GRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE  148 (179)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence            99999999999999863 5688999999999999999999999999974     469999887644333

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.05  E-value=5.2e-06  Score=61.64  Aligned_cols=54  Identities=17%  Similarity=0.073  Sum_probs=39.1

Q ss_pred             HhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976           20 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS   74 (319)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   74 (319)
                      ..+.|++++|+..+++..+..+. |...+..+...++..|++++|.+.|+...+.
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            44567777777777777776443 6777777777777777777777777777664

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.03  E-value=7.8e-06  Score=60.69  Aligned_cols=123  Identities=13%  Similarity=-0.013  Sum_probs=69.5

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHH
Q 020976           55 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA  134 (319)
Q Consensus        55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  134 (319)
                      ..+.|++++|...+++..+..+. |...+..+...++..|++++|.+.++...+.. +-+...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence            34567888888888888776433 67778888888888888888888888877663 22333333333333322222222


Q ss_pred             HHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          135 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      ..-.......+-+++...+......+...|+.++|.+.+.++.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            111111011111222333344455566777777777777777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.99  E-value=3.6e-05  Score=51.39  Aligned_cols=72  Identities=7%  Similarity=-0.164  Sum_probs=44.1

Q ss_pred             HhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 020976           20 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR----------LRTARWILKELGDSGHAPNAITYTTIMKC   89 (319)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   89 (319)
                      |-+.+.+++|+..|+...+..+. ++.++..+..++...++          +++|...|++..+..+. +..+|..+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence            34556688888888888776433 67777777777765433          35566666666554322 45555555555


Q ss_pred             HHhc
Q 020976           90 CFRN   93 (319)
Q Consensus        90 ~~~~   93 (319)
                      |...
T Consensus        85 y~~~   88 (145)
T d1zu2a1          85 YTSF   88 (145)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            5443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.98  E-value=3.3e-05  Score=51.57  Aligned_cols=71  Identities=7%  Similarity=-0.117  Sum_probs=42.4

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----------ChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020976           56 CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR----------KYKLGLEILSAMKRKGYTFDGFGYCTVIAAF  125 (319)
Q Consensus        56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  125 (319)
                      -+.+.+++|.+.|+...+..+. +..++..+..++...+          .+++|+..|++..+.. |.+..+|..+..+|
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence            3445678888888888775432 6667777776666433          3455666666666553 44455555555555


Q ss_pred             HHc
Q 020976          126 VKI  128 (319)
Q Consensus       126 ~~~  128 (319)
                      ...
T Consensus        86 ~~~   88 (145)
T d1zu2a1          86 TSF   88 (145)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.76  E-value=0.0005  Score=46.25  Aligned_cols=98  Identities=7%  Similarity=-0.096  Sum_probs=53.7

Q ss_pred             hHhHHHH--HHHHhhcCChHHHHHHHHHHHhCCCC-CC----------HHHHHHHHHHHHhcCChhHHHHHHHHHhhC--
Q 020976           10 TATFNIM--LNGLCKNRYTDNALRMFRGLQKHGFV-PE----------LVTYNILIKGLCKAGRLRTARWILKELGDS--   74 (319)
Q Consensus        10 ~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--   74 (319)
                      ..+|..+  ...+.+.|++++|+..|++..+.... |+          ..+|+.+..+|.+.|++++|...+++....  
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3456655  44555667788888888777652111 11          245666666677777777776666665431  


Q ss_pred             ---CCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976           75 ---GHAPN-----AITYTTIMKCCFRNRKYKLGLEILSAMK  107 (319)
Q Consensus        75 ---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~  107 (319)
                         ...++     ...++.+..+|...|++++|+..|++..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence               11111     1134444555555555555555555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00042  Score=42.13  Aligned_cols=65  Identities=9%  Similarity=-0.043  Sum_probs=37.5

Q ss_pred             hHhHHHHHHHHhhcCChHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 020976           10 TATFNIMLNGLCKNRYTDNALRMFRGLQKHG-----FVPE-LVTYNILIKGLCKAGRLRTARWILKELGDS   74 (319)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   74 (319)
                      ...+-.+...+.+.|++++|+..|++..+..     ..++ ..++..+..++.+.|++++|.+.++++.+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3344455666666677777776666654321     0111 345666666666666666666666666654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.52  E-value=0.00048  Score=46.38  Aligned_cols=56  Identities=14%  Similarity=0.084  Sum_probs=28.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCC-CC----------hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 020976           52 IKGLCKAGRLRTARWILKELGDSGHA-PN----------AITYTTIMKCCFRNRKYKLGLEILSAMK  107 (319)
Q Consensus        52 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~  107 (319)
                      ...+...|++++|++.|++..+.... |+          ..+|+.+..+|...|++++|...+++..
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            34445566777777777666542110 11          2344455555555555555555554443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00054  Score=41.63  Aligned_cols=60  Identities=12%  Similarity=-0.065  Sum_probs=42.9

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHhhccC----------CchhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          221 EAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      ..+-.+...+.+.|++++|...|++....          ...++..+..++.+.|++++|+..++++++.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            34446677777888888888888765422          1345777788888888888888888888775

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.10  E-value=0.013  Score=37.67  Aligned_cols=13  Identities=23%  Similarity=0.496  Sum_probs=5.3

Q ss_pred             hHHHHHHHHHHHh
Q 020976          131 LKEATDYMEQMVT  143 (319)
Q Consensus       131 ~~~a~~~~~~~~~  143 (319)
                      .++|.++|++..+
T Consensus        75 ~~~A~~~~~~aa~   87 (133)
T d1klxa_          75 LRKAAQYYSKACG   87 (133)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhhhc
Confidence            3344444444433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.08  E-value=0.011  Score=38.15  Aligned_cols=112  Identities=9%  Similarity=-0.032  Sum_probs=80.4

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHH
Q 020976           24 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLG   99 (319)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a   99 (319)
                      .++++|+++|++..+.|..   .....|..  ....+.++|.+++++..+.|   ++.....|...|..    ..+.++|
T Consensus         7 kd~~~A~~~~~kaa~~g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEM---FGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCT---THHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCh---hhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence            4688999999998887633   33333332  34567899999999998865   45566666666654    4568999


Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHH----cCchHHHHHHHHHHHhCCC
Q 020976          100 LEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGV  146 (319)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~  146 (319)
                      .++|++..+.|   ++.....|...|..    ..+.++|..+|+...+.|.
T Consensus        79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            99999999887   34455666666665    4578889999988887764

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.77  E-value=0.024  Score=35.41  Aligned_cols=140  Identities=14%  Similarity=0.090  Sum_probs=92.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 020976          160 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA  239 (319)
Q Consensus       160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  239 (319)
                      +...|..++..+++.+...+.   +..-|+.++--....-+-+...++++.+-+.   .|.          ..+++....
T Consensus        12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~v   75 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV   75 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred             HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHH
Confidence            445678888888888777642   3445566665555555666666666555432   111          122333333


Q ss_pred             HHHHHhhccCCchhHHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 020976          240 INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI  317 (319)
Q Consensus       240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~i  317 (319)
                      ...+-.+. .+...++..+..+..+|+-+...++.+.+.+ +-+|++.....+..+|.+.|...++-+++.+.=+.|+
T Consensus        76 v~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          76 VECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            33332222 2445566677888889999999999988776 4567888899999999999999999999998877775

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.44  E-value=0.14  Score=31.92  Aligned_cols=141  Identities=16%  Similarity=0.134  Sum_probs=83.2

Q ss_pred             HhhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 020976           20 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG   99 (319)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   99 (319)
                      +.-.|..++..++..+....   .+..-||.++--....-+-+...++++..-..   .|..          ..++....
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls----------~C~Nlk~v   75 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSV   75 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCch----------hhhcHHHH
Confidence            44457777777777776653   24556666666666666666666666655431   1111          12222222


Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHHHHHHhCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 020976          100 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ  179 (319)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  179 (319)
                      ...+-.+     ..+...++..+..+...|.-+...++++.+.+. -++++...-.+..+|.+.|...++-+++.+.-+.
T Consensus        76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            2222111     123344556667777777777777777776664 3566666777778888888888888888877777


Q ss_pred             CCC
Q 020976          180 GFE  182 (319)
Q Consensus       180 ~~~  182 (319)
                      |.+
T Consensus       150 G~K  152 (161)
T d1wy6a1         150 GEK  152 (161)
T ss_dssp             TCH
T ss_pred             hHH
Confidence            654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.075  Score=33.25  Aligned_cols=63  Identities=6%  Similarity=-0.010  Sum_probs=37.3

Q ss_pred             CChhhHHHHHHHHHhcC---CHHHHHHHHHhhccCCc----hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020976          218 SNLEAYNCIVDRLGKDG---KIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKS  280 (319)
Q Consensus       218 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  280 (319)
                      ++..+--...-++.+..   +.++++.+++.+...++    ..+-.+.-+|.+.|++++|.+.++.+++.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            44444444555555443   35567777766654322    34455666677777777777777777764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.02  E-value=0.36  Score=30.03  Aligned_cols=48  Identities=10%  Similarity=0.205  Sum_probs=21.3

Q ss_pred             hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 020976           62 RTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK  109 (319)
Q Consensus        62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  109 (319)
                      ++++.+|+++.+.+..-....+-.|.-+|.+.|++++|.+.++.+.+.
T Consensus        55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            345555555444221101233344444455555555555555555544

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.96  E-value=0.29  Score=28.76  Aligned_cols=46  Identities=17%  Similarity=0.264  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 020976           63 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR  108 (319)
Q Consensus        63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  108 (319)
                      ++.+-++.+....+.|++....+.+++|-+.+++..|.++++.++.
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444444444444555555555555555555555555555555443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=1.2  Score=34.88  Aligned_cols=75  Identities=5%  Similarity=-0.011  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC
Q 020976           50 ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG  129 (319)
Q Consensus        50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  129 (319)
                      ..+..+.+.++++.....+    . ..+++...-..+..+....|+.+.|.+.+..+-..| ...+..+..+...+...|
T Consensus        77 ~~l~~L~~~~~w~~~~~~~----~-~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~  150 (450)
T d1qsaa1          77 RFVNELARREDWRGLLAFS----P-EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG  150 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHC----C-SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred             HHHHHHHhccCHHHHHHhc----c-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcC
Confidence            3455666777766544333    1 123345555566677777777777777776666554 334445555555554444


Q ss_pred             c
Q 020976          130 R  130 (319)
Q Consensus       130 ~  130 (319)
                      .
T Consensus       151 ~  151 (450)
T d1qsaa1         151 K  151 (450)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.07  E-value=0.44  Score=28.01  Aligned_cols=63  Identities=16%  Similarity=0.199  Sum_probs=51.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 020976           25 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK   88 (319)
Q Consensus        25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   88 (319)
                      +.-++.+-++.+......|++....+.+++|.+.+++..|.++|+-.+.. ..++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence            55567788888888889999999999999999999999999999998864 2234556666554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=85.17  E-value=6.9  Score=30.32  Aligned_cols=178  Identities=11%  Similarity=-0.037  Sum_probs=107.7

Q ss_pred             CchHHHHHHHHHHHhCCCccChhhHHHHH----HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHhccCChhHH
Q 020976          129 GRLKEATDYMEQMVTDGVQLDIVSYNTLI----NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA  204 (319)
Q Consensus       129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  204 (319)
                      .+.+.+...+....... ..+...+..+-    ......+..+.+...+......+.  +.......+......+++..+
T Consensus       228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence            46667777777665532 11222222222    222334556777777766665433  333334444455566788888


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC--------------------------Cch-----h
Q 020976          205 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--------------------------DSF-----T  253 (319)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~-----~  253 (319)
                      ...+..+... ........-.+..++...|+.+.|...|..+...                          ...     .
T Consensus       305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~  383 (450)
T d1qsaa1         305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP  383 (450)
T ss_dssp             HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred             HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcCh
Confidence            7777766432 1222344456777778888888888888765432                          000     0


Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020976          254 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR  313 (319)
Q Consensus       254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (319)
                      -..-+..+...|....|...|..+...   .+......+.....+.|.++.|+....+.+
T Consensus       384 ~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         384 EMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence            112345677889999999988888754   245566777888889999999988776653

>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy-chain linker domain
domain: Clathrin heavy-chain linker domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.27  E-value=4.5  Score=25.93  Aligned_cols=111  Identities=13%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 020976           23 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI  102 (319)
Q Consensus        23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  102 (319)
                      .++.+-|.++   ..+.|++-....|..-.+.+...|++.+|-++-....+ |+-.+..|.+.+-..-...|+..-.+.+
T Consensus        12 l~n~~la~~l---A~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~pGq~spLL~Y   87 (157)
T d1bpoa1          12 LQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY   87 (157)
T ss_dssp             TCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred             cCCHHHHHHH---HHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCCCCCCHHHHH
Confidence            3455555443   34455555556677777777778888887777655443 3444666666655444445666666777


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHHcCchHHHHHHH
Q 020976          103 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM  138 (319)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  138 (319)
                      |..+.+.| +.+..--.-+++.....|+.+-..+++
T Consensus        88 F~~Ll~~~-~LN~~ESlEl~r~vL~q~r~~lve~Wl  122 (157)
T d1bpoa1          88 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWL  122 (157)
T ss_dssp             HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhcC-CCchHHhHHHHHHHHhcCcHHHHHHHH
Confidence            77777665 444443344555555566655555543

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.69  E-value=4.2  Score=25.25  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=15.1

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHH
Q 020976          188 HTILIDGLCKAGNIKGARLHLEYMN  212 (319)
Q Consensus       188 ~~~l~~~~~~~~~~~~a~~~~~~~~  212 (319)
                      ...++.-|...|+.++|...++++.
T Consensus        10 ~~~ll~EY~~~~D~~Ea~~~l~eL~   34 (129)
T d2nsza1          10 IDMLLKEYLLSGDISEAEHCLKELE   34 (129)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            3455666666666666666666553