Citrus Sinensis ID: 020982

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
cccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccEEccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHccc
cEcHHHHHHHHHHHHHHccHHcHHHccHHHHHHHHHHcEcccccEEccccccEcHHHHHHHHHHHHHHccHHHccHHHHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHcccHHHccHHHHHHHHHccEcccccEcccccccccHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHcccccccccccccccccccccccccccEHHHHHHHHHHccccccccHHHHHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHHHEccccccccccccccEcccccccccccccEEcccHHHHHHHHHHHHcc
MPHLATTYAAVNALISlggekslpsinrsKVYTFLKcmkdpsgafrmhdageiDVRACYTAISVASILNILDDELLQNVGNYILSCqtyeggiagepgseahggytfCGLAAMILINEADRLDLDALIGWVVFRqgveggfqgrtnkLVDGCYSFWQGGVFALLRRFHsiigesptpvdqrgaecsidntqtttasdvsegdgssdeissqgdehchfqhrereplfHSIALQRYLLLCsqdprgglrdklrkprdyyhtcyclsglsicqhswlkdedssplpravlgpysnvlepvhpVFNIVLDRYHEaheffsrs
MPHLATTYAAVNALIslggekslpsiNRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGesptpvdqrgaecsidntqtttasdvsegdgSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAsdvsegdgssdeissqgdeHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
*****TTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIG***************************************************EPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDED**PLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEF****
MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNT**************************HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query319 2.2.26 [Sep-21-2011]
Q04903419 Protein farnesyltransfera N/A no 0.962 0.732 0.659 1e-124
Q38920482 Protein farnesyltransfera yes no 1.0 0.661 0.614 1e-109
Q02293437 Protein farnesyltransfera yes no 0.836 0.610 0.452 6e-69
P49356437 Protein farnesyltransfera yes no 0.836 0.610 0.452 7e-69
P49355437 Protein farnesyltransfera yes no 0.836 0.610 0.452 1e-68
Q8K2I1437 Protein farnesyltransfera yes no 0.836 0.610 0.449 2e-68
Q55D51500 Protein farnesyltransfera yes no 0.811 0.518 0.379 7e-55
P22007431 Protein farnesyltransfera yes no 0.818 0.605 0.342 3e-42
O13782382 Protein farnesyltransfera yes no 0.686 0.573 0.371 9e-40
B0G172339 Probable geranylgeranyl t no no 0.705 0.663 0.282 9e-24
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB PE=2 SV=1 Back     alignment and function desciption
 Score =  446 bits (1146), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/338 (65%), Positives = 256/338 (75%), Gaps = 31/338 (9%)

Query: 1   MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYT 60
           MPHLATTYAAVN LI+LGGEKSL SINR+K+Y F++ MK P+G FRMHD GEIDVRACYT
Sbjct: 92  MPHLATTYAAVNTLITLGGEKSLASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYT 151

Query: 61  AISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD 120
           AISVAS+LNILDDEL++NVG++ILSCQTYEGG+AGEPGSEAHGGYTFCGLAAMILI E +
Sbjct: 152 AISVASVLNILDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVN 211

Query: 121 RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
           RLDL  L+ WVVFRQG E GFQGRTNKLVDGCYSFWQGG  ALL+R HSII       D+
Sbjct: 212 RLDLPRLLDWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSII-------DE 264

Query: 181 RGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHF--------------------QH 220
           + AE S    Q  T SD  E     D  SS    H                       + 
Sbjct: 265 QMAEAS----QFVTVSDAPEEKECLDGTSSHATSHIRHEGMNESCSSDVKNIGYNFISEW 320

Query: 221 REREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDS 280
           R+ EPLFHSIALQ+Y+LLCSQ+  GGLRDK  K RD+YH+CYCLSGLS+CQ+SW K  DS
Sbjct: 321 RQSEPLFHSIALQQYILLCSQEQDGGLRDKPGKRRDHYHSCYCLSGLSLCQYSWSKRPDS 380

Query: 281 SPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 318
            PLP+ V+GPYSN+LEP+HP+FN+VLDRY EAHEFFS+
Sbjct: 381 PPLPKVVMGPYSNLLEPIHPLFNVVLDRYREAHEFFSQ 418
Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
Pisum sativum (taxid: 3888)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 8
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana GN=FTB PE=1 SV=3 Back     alignment and function description
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus GN=Fntb PE=1 SV=1 Back     alignment and function description
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1 Back     alignment and function description
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2 SV=1 Back     alignment and function description
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb PE=1 SV=1 Back     alignment and function description
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1 Back     alignment and function description
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1 SV=2 Back     alignment and function description
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1 Back     alignment and function description
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
296087672 421 unnamed protein product [Vitis vinifera] 0.993 0.752 0.699 1e-127
225452468 438 PREDICTED: protein farnesyltransferase s 0.993 0.723 0.699 1e-127
255552586 438 protein farnesyltransferase beta subunit 0.965 0.703 0.694 1e-125
417482419 RecName: Full=Protein farnesyltransferas 0.962 0.732 0.659 1e-122
356548601 455 PREDICTED: protein farnesyltransferase s 0.987 0.692 0.671 1e-121
356516702 455 PREDICTED: protein farnesyltransferase s 0.949 0.665 0.650 1e-120
449446662 428 PREDICTED: protein farnesyltransferase s 0.956 0.712 0.658 1e-112
449489564361 PREDICTED: protein farnesyltransferase s 0.956 0.844 0.658 1e-112
350536009 470 farnesyl protein transferase subunit B [ 0.984 0.668 0.621 1e-110
326497671 455 predicted protein [Hordeum vulgare subsp 0.987 0.692 0.599 1e-109
>gi|296087672|emb|CBI34928.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/323 (69%), Positives = 261/323 (80%), Gaps = 6/323 (1%)

Query: 1   MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYT 60
           MPHLATTYAA+NALI+LGG +SL SINR KVYTFL+ MKDPSGAFRMHDAGE+DVRACYT
Sbjct: 101 MPHLATTYAAINALITLGGHRSLSSINRGKVYTFLRRMKDPSGAFRMHDAGEMDVRACYT 160

Query: 61  AISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD 120
           AISVAS+L ILDDEL++ VGN+ILSCQTYEGGI+GEPGSEAHGGYTFCGLA M+LI E +
Sbjct: 161 AISVASVLTILDDELVKGVGNFILSCQTYEGGISGEPGSEAHGGYTFCGLATMVLIGEVN 220

Query: 121 RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
           RLDL +LI WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL+++ HSII E    +D 
Sbjct: 221 RLDLTSLIDWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALIQKLHSIIEEQLRLLDA 280

Query: 181 RGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHF----QHREREPLFHSIALQRYL 236
            G+  +ID+ Q  + S  S   G  D   S    +  F    +  E EPLFHSIALQ+Y+
Sbjct: 281 GGS--AIDSPQLASISCHSGKRGLHDTSGSAKFSNIGFNFLKEPAEMEPLFHSIALQQYI 338

Query: 237 LLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLE 296
           +LCSQ   GG RDK  K RDYYHTCYCLSGLS+ Q+S+ KD DS PLPRAV GPYSN+LE
Sbjct: 339 ILCSQLQEGGFRDKPGKHRDYYHTCYCLSGLSVAQYSYSKDADSPPLPRAVFGPYSNLLE 398

Query: 297 PVHPVFNIVLDRYHEAHEFFSRS 319
           P+HP++N++LD YHEAHEFFS S
Sbjct: 399 PIHPLYNVILDLYHEAHEFFSTS 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225452468|ref|XP_002278403.1| PREDICTED: protein farnesyltransferase subunit beta-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552586|ref|XP_002517336.1| protein farnesyltransferase beta subunit, putative [Ricinus communis] gi|223543347|gb|EEF44878.1| protein farnesyltransferase beta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|417482|sp|Q04903.1|FNTB_PEA RecName: Full=Protein farnesyltransferase subunit beta; Short=FTase-beta; AltName: Full=CAAX farnesyltransferase subunit beta; AltName: Full=Ras proteins prenyltransferase subunit beta gi|169049|gb|AAA33649.1| farnesyl-protein transferase beta-subunit [Pisum sativum] Back     alignment and taxonomy information
>gi|356548601|ref|XP_003542689.1| PREDICTED: protein farnesyltransferase subunit beta [Glycine max] Back     alignment and taxonomy information
>gi|356516702|ref|XP_003527032.1| PREDICTED: protein farnesyltransferase subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|449446662|ref|XP_004141090.1| PREDICTED: protein farnesyltransferase subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449489564|ref|XP_004158349.1| PREDICTED: protein farnesyltransferase subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|350536009|ref|NP_001233969.1| farnesyl protein transferase subunit B [Solanum lycopersicum] gi|1815668|gb|AAC49666.1| farnesyl protein transferase subunit B [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|326497671|dbj|BAK05925.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
TAIR|locus:2173802482 ERA1 "ENHANCED RESPONSE TO ABA 1.0 0.661 0.596 6.2e-101
UNIPROTKB|P49355437 FNTB "Protein farnesyltransfer 0.517 0.377 0.560 2e-69
UNIPROTKB|B4DL54471 CHURC1-FNTB "cDNA FLJ59570, hi 0.517 0.350 0.554 6.8e-69
UNIPROTKB|B4E1A0391 CHURC1-FNTB "cDNA FLJ58825, hi 0.517 0.421 0.554 6.8e-69
UNIPROTKB|H0YHI0472 CHURC1-FNTB "Protein CHURC1-FN 0.517 0.349 0.554 6.8e-69
UNIPROTKB|P49356437 FNTB "Protein farnesyltransfer 0.517 0.377 0.554 6.8e-69
RGD|620119437 Fntb "farnesyltransferase, CAA 0.517 0.377 0.554 1.1e-68
UNIPROTKB|Q02293437 Fntb "Protein farnesyltransfer 0.517 0.377 0.554 1.1e-68
UNIPROTKB|F1Q0W7437 FNTB "Uncharacterized protein" 0.517 0.377 0.554 2.9e-68
MGI|MGI:1861305437 Fntb "farnesyltransferase, CAA 0.517 0.377 0.554 3.7e-68
TAIR|locus:2173802 ERA1 "ENHANCED RESPONSE TO ABA 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 195/327 (59%), Positives = 238/327 (72%)

Query:     1 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYT 60
             +PHLATTYAAVNAL++LGG+K+L SINR K+  FL+ MKD SG FRMHD GE+DVRACYT
Sbjct:   155 LPHLATTYAAVNALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEMDVRACYT 214

Query:    61 AISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD 120
             AISVASILNI+DDEL Q +G+YILSCQTYEGGI GEPGSEAHGGYT+CGLAAMILINE D
Sbjct:   215 AISVASILNIMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVD 274

Query:   121 RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRF-----HSIIGESP 175
             RL+LD+L+ W V RQGVE GFQGRTNKLVDGCY+FWQ     LL+R      H + G S 
Sbjct:   275 RLNLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLYSTNDHDVHGSSH 334

Query:   176 TP--VDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCH-FQHREREPLFHSIAL 232
                  ++       D+ + +                     H   + +R  + +F S+ L
Sbjct:   335 ISEGTNEEHHAHDEDDLEDSDDDDDSDEDNDEDSVNGHRIHHTSTYINRRMQLVFDSLGL 394

Query:   233 QRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYS 292
             QRY+LLCS+ P GG RDK RKPRD+YHTCYCLSGLS+ QH+WLKDED+ PL R ++G YS
Sbjct:   395 QRYVLLCSKIPDGGFRDKPRKPRDFYHTCYCLSGLSVAQHAWLKDEDTPPLTRDIMGGYS 454

Query:   293 NVLEPVHPVFNIVLDRYHEAHEFFSRS 319
             N+LEPV  + NIV+D+Y+EA EFF ++
Sbjct:   455 NLLEPVQLLHNIVMDQYNEAIEFFFKA 481
GO:0003824 "catalytic activity" evidence=IEA
GO:0004660 "protein farnesyltransferase activity" evidence=IMP
GO:0005965 "protein farnesyltransferase complex" evidence=IMP
GO:0018342 "protein prenylation" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009414 "response to water deprivation" evidence=IMP
GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0004311 "farnesyltranstransferase activity" evidence=ISS
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0009934 "regulation of meristem structural organization" evidence=IMP
UNIPROTKB|P49355 FNTB "Protein farnesyltransferase subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B4DL54 CHURC1-FNTB "cDNA FLJ59570, highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4E1A0 CHURC1-FNTB "cDNA FLJ58825, highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0YHI0 CHURC1-FNTB "Protein CHURC1-FNTB" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P49356 FNTB "Protein farnesyltransferase subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|620119 Fntb "farnesyltransferase, CAAX box, beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q02293 Fntb "Protein farnesyltransferase subunit beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q0W7 FNTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1861305 Fntb "farnesyltransferase, CAAX box, beta" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q38920FNTB_ARATH2, ., 5, ., 1, ., 5, 80.61461.00.6618yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.5.10.963
4th Layer2.5.1.580.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVII.722.1
annotation not avaliable (405 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00070186
farnesyltranstransferase (EC-2.5.1.29) (330 aa)
   •• • 0.845

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
PLN02710439 PLN02710, PLN02710, farnesyltranstransferase subun 0.0
cd02893299 cd02893, FTase, Protein farnesyltransferase (FTase 1e-124
cd02890286 cd02890, PTase, Protein prenyltransferase (PTase) 4e-88
COG5029342 COG5029, CAL1, Prenyltransferase, beta subunit [Po 5e-59
cd02895307 cd02895, GGTase-I, Geranylgeranyltransferase types 4e-40
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 8e-36
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 2e-33
PLN03201316 PLN03201, PLN03201, RAB geranylgeranyl transferase 1e-26
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 9e-12
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 9e-11
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 6e-10
cd02890286 cd02890, PTase, Protein prenyltransferase (PTase) 7e-09
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 2e-07
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 2e-07
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 7e-07
PLN03201316 PLN03201, PLN03201, RAB geranylgeranyl transferase 6e-06
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 2e-05
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 3e-05
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 6e-05
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 1e-04
cd02893299 cd02893, FTase, Protein farnesyltransferase (FTase 6e-04
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 8e-04
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 0.002
COG5029342 COG5029, CAL1, Prenyltransferase, beta subunit [Po 0.003
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta Back     alignment and domain information 
 Score =  537 bits (1386), Expect = 0.0
 Identities = 219/323 (67%), Positives = 258/323 (79%), Gaps = 6/323 (1%)

Query: 1   MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYT 60
           +PHLATTYAAVN L+++GGE++L SINR K+YTFL  MKDPSG FRMHD GE+DVRACYT
Sbjct: 118 LPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYT 177

Query: 61  AISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD 120
           AISVAS+LNILDDEL++ VG+YILSCQTYEGGI GEPG+EAHGGYTFCGLAAMILINE D
Sbjct: 178 AISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVD 237

Query: 121 RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGE----SPT 176
           RLDL +LI WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL++  +I+ E      +
Sbjct: 238 RLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGS 297

Query: 177 PVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYL 236
            +     E   D  +T+++     GD  S + S  G +     +++  PLFHSIALQ+Y+
Sbjct: 298 SIMFEELED--DACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYI 355

Query: 237 LLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLE 296
           LLCSQ   GGLRDK  K RDYYHTCYCLSGLS+ Q+S  KDEDS PLPR VLGPYSN+LE
Sbjct: 356 LLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYSASKDEDSPPLPRHVLGPYSNLLE 415

Query: 297 PVHPVFNIVLDRYHEAHEFFSRS 319
           P+HP++N+VLD+YHEA EFFS  
Sbjct: 416 PIHPLYNVVLDKYHEAIEFFSSK 438

Length = 439
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 319
PLN02710439 farnesyltranstransferase subunit beta 100.0
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 100.0
PLN02710439 farnesyltranstransferase subunit beta 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
KOG0366329 consensus Protein geranylgeranyltransferase type I 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
KOG0366329 consensus Protein geranylgeranyltransferase type I 100.0
KOG0367347 consensus Protein geranylgeranyltransferase Type I 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
KOG0367347 consensus Protein geranylgeranyltransferase Type I 100.0
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.92
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.91
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.8
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.69
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.64
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.59
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.59
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.57
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.56
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.53
COG1689274 Uncharacterized protein conserved in archaea [Func 99.52
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.52
COG1689274 Uncharacterized protein conserved in archaea [Func 99.51
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.45
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.45
PLN02993763 lupeol synthase 99.42
PLN02993763 lupeol synthase 99.42
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.41
PLN03012759 Camelliol C synthase 99.39
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.39
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.39
PLN03012759 Camelliol C synthase 99.32
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.02
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.02
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 98.92
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 98.7
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 98.52
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 98.5
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 98.49
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 98.41
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 98.2
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 97.84
PF07678246 A2M_comp: A-macroglobulin complement component; In 97.48
PF07678246 A2M_comp: A-macroglobulin complement component; In 97.39
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 97.06
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 96.27
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 90.97
PF05817 636 Ribophorin_II: Oligosaccharyltransferase subunit R 90.77
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 86.66
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 85.48
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information 
Probab=100.00  E-value=2.3e-65  Score=495.94  Aligned_cols=307  Identities=69%  Similarity=1.168  Sum_probs=256.6

Q ss_pred             CCcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHH
Q 020982            1 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVG   80 (319)
Q Consensus         1 ~~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~   80 (319)
                      .+|++.||+||++|.+||+++.++.+||+++++||++||++||||+..+++|+|+|+||||++++.+|+..+.++.++++
T Consensus       118 ~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~  197 (439)
T PLN02710        118 LPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVG  197 (439)
T ss_pred             CccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHH
Confidence            47999999999999999987667889999999999999999999999999999999999999999999998888999999


Q ss_pred             HHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHH
Q 020982           81 NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV  160 (319)
Q Consensus        81 ~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~as  160 (319)
                      +||.+||++||||++.|+.|+|+++||||+++|.+||+.+.+|.+++++||++||..+|||+|||||.+|+|||||++|+
T Consensus       198 ~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~  277 (439)
T PLN02710        198 DYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV  277 (439)
T ss_pred             HHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHH
Confidence            99999999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccCCCC---Cccc-----c--CCcccCCCCcccCcCCCccCCCCCCccccccCCccccccc---ccCCccc
Q 020982          161 FALLRRFHSIIGESP---TPVD-----Q--RGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQH---REREPLF  227 (319)
Q Consensus       161 L~lL~~~~~~~~~~~---~~~~-----~--~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~  227 (319)
                      |+||++++.++.+.+   .+.+     .  .|.....         ++......  ...++-+.++.+..   .....++
T Consensus       278 L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  346 (439)
T PLN02710        278 FALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSS---------GKDDAGDT--DSADYSKVGFDFIKASNQQMGPLF  346 (439)
T ss_pred             HHHHHHHhhcccccccccccccccccccccccccccc---------cccccccc--cccccccccccccccccccccccc
Confidence            999998865422111   0000     0  0111100         00000000  00001111112211   0223578


Q ss_pred             CHHHHHHHHHhccCCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCccccCCCCCCCcccccccccCHH
Q 020982          228 HSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLD  307 (319)
Q Consensus       228 ~~~~l~~~il~~~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~~~~~~~~~~~h~~~~i~~~  307 (319)
                      |.++|++|||.|+|.+.|||+++|+|.||+|||||++++||++|+....+.+.+++.+.+++.+.|.+.++||+|||+.+
T Consensus       347 d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~~~~~~~~~~~~~~~~~g~~~n~l~~~~p~~ni~~~  426 (439)
T PLN02710        347 HSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYSASKDEDSPPLPRHVLGPYSNLLEPIHPLYNVVLD  426 (439)
T ss_pred             CHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhhcccccCCCCCccccccCCCccccCCCCCccCCCHH
Confidence            99999999999999999999999999999999999999999999998877777777777889888999999999999999


Q ss_pred             HHHHHHhhhcc
Q 020982          308 RYHEAHEFFSR  318 (319)
Q Consensus       308 ~~~~~~~~~~~  318 (319)
                      ++++|++||+.
T Consensus       427 ~~~~~~~~f~~  437 (439)
T PLN02710        427 KYHEAIEFFSS  437 (439)
T ss_pred             HHHHHHHHHhh
Confidence            99999999986

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
1jcq_B437 Crystal Structure Of Human Protein Farnesyltransfer 4e-68
1ft1_B437 Crystal Structure Of Protein Farnesyltransferase At 4e-68
3pz4_B426 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 4e-68
2h6g_B437 W102t Protein Farnesyltransferase Mutant Complexed 5e-68
1o1r_B427 Structure Of Fpt Bound To Ggpp Length = 427 5e-68
2zir_B440 Crystal Structure Of Rat Protein Farnesyltransferas 5e-68
1n94_B397 Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf 5e-68
1ft2_B401 Co-Crystal Structure Of Protein Farnesyltransferase 5e-68
1nl4_B401 Crystal Structure Of Rat Farnesyl Transferase In Co 6e-68
1n95_B402 Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf 6e-68
2h6h_B437 Y365f Protein Farnesyltransferase Mutant Complexed 1e-67
2h6i_B437 W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN 1e-67
3euv_B427 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 4e-67
3q73_B520 Cryptococcus Neoformans Protein Farnesyltransferase 5e-39
1dce_B331 Crystal Structure Of Rab Geranylgeranyltransferase 2e-21
3pz1_B330 Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) 2e-21
1n4p_B377 Protein Geranylgeranyltransferase Type-I Complexed 2e-20
3dra_B390 Candida Albicans Protein Geranylgeranyltransferase- 7e-10
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437 Back     alignment and structure 
Iteration: 1

 Score =  254 bits (650), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 140/316 (44%), Positives = 175/316 (55%), Gaps = 49/316 (15%)
Query: 2   PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
           PHLA TYAAVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A
Sbjct: 148 PHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 207
Query: 62  ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
            SVAS+ NI+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++     
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERS 267
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
           L+L +L+ WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R     G+    +  
Sbjct: 268 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 327
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
                                                        +FH  ALQ Y+L+C 
Sbjct: 328 W--------------------------------------------MFHQQALQEYILMCC 343
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
           Q P GGL DK  K RD+YHTCYCLSGLSI QH        + L   VLG   N L+P HP
Sbjct: 344 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVLGVPENALQPTHP 399
Query: 301 VFNIVLDRYHEAHEFF 316
           V+NI  D+  +A  +F
Sbjct: 400 VYNIGPDKVIQATTYF 415
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437 Back     alignment and structure
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426 Back     alignment and structure
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437 Back     alignment and structure
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427 Back     alignment and structure
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440 Back     alignment and structure
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397 Back     alignment and structure
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401 Back     alignment and structure
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401 Back     alignment and structure
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402 Back     alignment and structure
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437 Back     alignment and structure
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437 Back     alignment and structure
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427 Back     alignment and structure
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 520 Back     alignment and structure
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331 Back     alignment and structure
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330 Back     alignment and structure
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377 Back     alignment and structure
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 390 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 1e-87
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 2e-15
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 2e-79
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 5e-11
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 4e-68
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 2e-56
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 3e-56
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 4e-09
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
 Score =  268 bits (686), Expect = 1e-87
 Identities = 139/319 (43%), Positives = 174/319 (54%), Gaps = 49/319 (15%)

Query: 1   MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYT 60
            PHLA TYAAVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y 
Sbjct: 147 YPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYC 206

Query: 61  AISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD 120
           A SVAS+ NI+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++    
Sbjct: 207 AASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRER 266

Query: 121 RLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVD 179
            L+L +L+ WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R     G+    + 
Sbjct: 267 SLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMS 326

Query: 180 QRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLC 239
                                                         +FH  ALQ Y+L+C
Sbjct: 327 --------------------------------------------HWMFHQQALQEYILMC 342

Query: 240 SQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVH 299
            Q P GGL DK  K RD+YHTCYCLSGLSI QH              VLG   N L+P H
Sbjct: 343 CQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDV----VLGVPENALQPTH 398

Query: 300 PVFNIVLDRYHEAHEFFSR 318
           PV+NI  D+  +A  +F +
Sbjct: 399 PVYNIGPDKVIQATTYFLQ 417
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 100.0
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 100.0
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.75
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.74
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.68
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.67
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.37
2wy7_A310 Complement C3D fragment; immune system, immune res 99.29
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 98.98
2wy7_A310 Complement C3D fragment; immune system, immune res 98.9
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.81
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 98.45
2hr0_B 915 Complement C3 alpha' chain; complement component C 98.45
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.08
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.06
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 97.89
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 97.64
2hr0_B 915 Complement C3 alpha' chain; complement component C 97.61
4fxk_B767 Complement C4-A alpha chain; immune system, proteo 97.6
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 97.35
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 97.35
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 97.17
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 97.16
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 97.12
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 96.92
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 96.66
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 96.65
3prx_B 1642 Cobra venom factor; immune system, complement, imm 96.61
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 96.42
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 96.18
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 95.23
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 94.96
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 94.87
3prx_B 1642 Cobra venom factor; immune system, complement, imm 94.33
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 80.81
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
Probab=100.00  E-value=2.1e-60  Score=467.76  Aligned_cols=292  Identities=38%  Similarity=0.644  Sum_probs=235.8

Q ss_pred             CCcHHHHHHHHHHHHHhCCC---CCCCccc--HHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHH
Q 020982            1 MPHLATTYAAVNALISLGGE---KSLPSIN--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDEL   75 (319)
Q Consensus         1 ~~~l~~ty~al~~L~lLg~~---~~~~~~d--r~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~   75 (319)
                      .||+++||+||++|.+|+.+   +.++.+|  |+++++||+++|++||+|.+..+++.|+++||||++++.+||..+..+
T Consensus       137 ~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~  216 (520)
T 3q7a_B          137 IPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPEL  216 (520)
T ss_dssp             CCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHH
T ss_pred             CCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHH
Confidence            48999999999999999975   2366788  999999999999999999998788999999999999999999988889


Q ss_pred             HHHHHHHHHhccCCCCcccC-----------------------CCCCCCchhHHHHHHHHHHHhcCC------CcccHHH
Q 020982           76 LQNVGNYILSCQTYEGGIAG-----------------------EPGSEAHGGYTFCGLAAMILINEA------DRLDLDA  126 (319)
Q Consensus        76 ~~~~~~~i~s~Q~~DGGF~~-----------------------~pg~es~~~~Ty~Al~~L~llg~~------~~~d~~~  126 (319)
                      ++++++||++||++|||||.                       .|+.|+|+++|||||++|.+|++.      +.+|.++
T Consensus       217 v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~  296 (520)
T 3q7a_B          217 LHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANA  296 (520)
T ss_dssp             HTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHH
T ss_pred             HHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHH
Confidence            99999999999999999999                       689999999999999999999986      3689999


Q ss_pred             HHHHHHhcCC---CCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccC-CCCCccccCCcccCCCCcccCcCCCccCCC
Q 020982          127 LIGWVVFRQG---VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIG-ESPTPVDQRGAECSIDNTQTTTASDVSEGD  202 (319)
Q Consensus       127 l~~~l~~~Q~---~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~-~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~  202 (319)
                      +++||.+||.   ++|||+||+||.+|+||+||++++|.||+.+..... .++..      ....+..+...+       
T Consensus       297 l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~------~~~~~~~~~~~~-------  363 (520)
T 3q7a_B          297 ALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKK------SRIEVFEEEKEG-------  363 (520)
T ss_dssp             HHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC---------------------------
T ss_pred             HHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhccccccccc------cccccccccccc-------
Confidence            9999999997   469999999999999999999999999998621100 00000      000000000000       


Q ss_pred             CCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCC---CccCCCCCCCcchHHhHHHHHHHHhcCcCCCCC--
Q 020982          203 GSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPR---GGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKD--  277 (319)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~---GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~--  277 (319)
                          ++-   +.      .....++|+++|++|||.|+|.+.   |||+++|+|.||+|||||++++||++++....+  
T Consensus       364 ----~w~---~~------~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~~~~~~  430 (520)
T 3q7a_B          364 ----DWE---DV------PPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSHSPS  430 (520)
T ss_dssp             --------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCEEECHH
T ss_pred             ----ccc---cc------cccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCChh
Confidence                000   00      001247899999999998889886   999999999999999999999999999865321  


Q ss_pred             --------CCC----C-------CC---------------------------CccccCCCCCCCcccccccccCHHHHHH
Q 020982          278 --------EDS----S-------PL---------------------------PRAVLGPYSNVLEPVHPVFNIVLDRYHE  311 (319)
Q Consensus       278 --------~~~----~-------~~---------------------------~~~i~~~~~~~~~~~h~~~~i~~~~~~~  311 (319)
                              .+.    +       .+                           .+.|.|.|+|.+.++||+|||+..++++
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~g~~~n~~~~~hp~~ni~~~~~~~  510 (520)
T 3q7a_B          431 TVSSNRLKFDASKGLPAVKPVAPGGGWKNEDERQNARREIWANALGWIEEEGGEIIVGGKDNRINTTTPVFNILGLRLKP  510 (520)
T ss_dssp             HHHHHHHHCCTTCCCCCCCCSSTTCSCSSHHHHHHHHHHHHHHHTCEEECTTCCCCTTCGGGCCCCBCTTTCSBHHHHHH
T ss_pred             hHHHhhhccccccccccccccccccccccchhhHHHHHHHHhhhhccccccCCceeecCccccccCCCCcccCCHHHHHH
Confidence                    011    1       00                           1235677899999999999999999999


Q ss_pred             HHhhhcc
Q 020982          312 AHEFFSR  318 (319)
Q Consensus       312 ~~~~~~~  318 (319)
                      |.+||..
T Consensus       511 ~~~~f~~  517 (520)
T 3q7a_B          511 FINYFYC  517 (520)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9999964
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 319
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 4e-96
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 8e-14
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 4e-59
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 4e-05
d1n4qb_346 a.102.4.3 (B:) Protein farnesyltransferase, beta-s 2e-58
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  288 bits (737), Expect = 4e-96
 Identities = 140/319 (43%), Positives = 176/319 (55%), Gaps = 49/319 (15%)

Query: 1   MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYT 60
            PHLA TYAAVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y 
Sbjct: 127 YPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYC 186

Query: 61  AISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD 120
           A SVAS+ NI+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++    
Sbjct: 187 AASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRER 246

Query: 121 RLDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVD 179
            L+L +L+ WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R     G+    + 
Sbjct: 247 SLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMS 306

Query: 180 QRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLC 239
                                                         +FH  ALQ Y+L+C
Sbjct: 307 H--------------------------------------------WMFHQQALQEYILMC 322

Query: 240 SQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVH 299
            Q P GGL DK  K RD+YHTCYCLSGLSI QH        + L   VLG   N L+P H
Sbjct: 323 CQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFG----SGAMLHDVVLGVPENALQPTH 378

Query: 300 PVFNIVLDRYHEAHEFFSR 318
           PV+NI  D+  +A  +F +
Sbjct: 379 PVYNIGPDKVIQATTYFLQ 397
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.58
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.56
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.45
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.43
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.05
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 98.45
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.03
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 97.96
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 97.73
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 97.18
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 97.04
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 96.98
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 96.62
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 96.27
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 95.98
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 95.67
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-64  Score=484.36  Aligned_cols=270  Identities=52%  Similarity=0.903  Sum_probs=241.6

Q ss_pred             CCcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHH
Q 020982            1 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVG   80 (319)
Q Consensus         1 ~~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~   80 (319)
                      +||+++||+||++|.+||.++.++.+||+++++||.++|++||+|....++++|+|+||||++++.+||..+++++++++
T Consensus       127 ~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~  206 (401)
T d2h6fb1         127 YPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTA  206 (401)
T ss_dssp             CBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHH
T ss_pred             CcchHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHHHHHHHhCCCCHHHHHHHH
Confidence            48999999999999999986556789999999999999999999999989999999999999999999998888999999


Q ss_pred             HHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC-CccccCCCCCCCchhhhhHHHH
Q 020982           81 NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGV-EGGFQGRTNKLVDGCYSFWQGG  159 (319)
Q Consensus        81 ~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~-dGGF~gr~~~~~D~~yt~~~~a  159 (319)
                      +||.+||++||||++.|+.|+|+++||||+++|.+||+.+.+|++++++||++||.. +|||+||+||.+|+|||||++|
T Consensus       207 ~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga  286 (401)
T d2h6fb1         207 EWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAG  286 (401)
T ss_dssp             HHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTT
T ss_pred             HHHHHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHHHHHHHHHHcCCCCCCccCCCCCCCcchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999974 8999999999999999999999


Q ss_pred             HHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhc
Q 020982          160 VFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLC  239 (319)
Q Consensus       160 sL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~  239 (319)
                      +|.||+.......+..                            +                ....+++|.+++++|||.|
T Consensus       287 ~l~lL~~~~~~~~~~~----------------------------~----------------~~~~~l~d~~~l~~yiL~~  322 (401)
T d2h6fb1         287 LLPLLHRALHAQGDPA----------------------------L----------------SMSHWMFHQQALQEYILMC  322 (401)
T ss_dssp             HHHHHHHHHHHTTCTT----------------------------C----------------CSSCCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccc----------------------------c----------------cccccccCHHHHHHHHHHH
Confidence            9999998654321100                            0                0012578999999999999


Q ss_pred             cCCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCccccCCCCCCCcccccccccCHHHHHHHHhhhcc
Q 020982          240 SQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR  318 (319)
Q Consensus       240 ~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~~~~~~~~~~~h~~~~i~~~~~~~~~~~~~~  318 (319)
                      +|.+.|||+++|+|.||+|||||++++||++++......    ....+.+.+++.+.++||+|||+.+++++|++||++
T Consensus       323 ~Q~~~GGf~d~Pg~~pD~yHT~y~L~gLSl~~~~~~~~~----~~~~~~~~~~~~l~~~~P~~~i~~~~~~~~~~~f~~  397 (401)
T d2h6fb1         323 CQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAM----LHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQ  397 (401)
T ss_dssp             SBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEETTE----EEECCCSSGGGCCCCCCTTTSSCHHHHHHHHHHHHT
T ss_pred             cCCCCCCcCCCCCCCCCccHHHHHHHHHHhcCCcCccCc----ccccccCCcccccccCCCcccCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998653221    122355667788999999999999999999999986
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure